Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	bcgsc.ca	37	17	67218021	67218021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ABCA10	NM_080282	exon6	c.T215C	p.M72T	.	.	163	5	129	0	.	93
ACTR1B	10120	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98275456	98275456	+	Missense_Mutation	SNP	A	A	C	rs148249069	alternate_allele	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ACTR1B	NM_005735	exon5	c.T326G	p.L109R	.	.	36	6	46	0	A|1.000;T|0.000	91
ADAMTS6	11174	bcgsc.ca	37	5	64520162	64520162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ADAMTS6	NM_197941	exon18	c.T2257C	p.S753P	.	.	97	4	107	0	.	226
ADCY8	114	broad.mit.edu;bcgsc.ca	37	8	131848681	131848681	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ADCY8	NM_001115	exon12	c.G2517T	p.T839T	.	.	56	25	45	1	.	157
ALKBH7	84266	ucsc.edu;bcgsc.ca	37	19	6374235	6374235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ALKBH7	NM_032306	exon2	c.A226G	p.T76A	.	.	22	4	22	0	.	90
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56247067	56247067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ALPK2	NM_052947	exon4	c.T941C	p.I314T	.	.	171	28	139	0	.	765
ANKFY1	51479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4098292	4098292	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ANKFY1	NM_001257999	exon10	c.C1479T	p.D493D	.	.	60	11	51	0	.	93
ANKRD30BL	554226	broad.mit.edu	37	2	132919171	132919171	+	RNA	SNP	A	A	G	rs199695856		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	.	.	.	.	.	.	87	6	93	1	.	.
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	.	.	.	.	.	.	83	6	97	1	.	.
AP2A2	161	ucsc.edu	37	11	986787	986787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	AP2A2	NM_001242837	exon9	c.A968G	p.E323G	.	.	39	4	46	0	.	90
AP4E1	23431	broad.mit.edu	37	15	51250744	51250744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	AP4E1	NM_007347	exon14	c.C1604T	p.A535V	.	.	99	3	89	0	.	90
AP4E1	23431	mdanderson.org	37	15	51200995	51200995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	AP4E1	NM_007347	exon1	c.A20G	p.K7R	.	.	8	2	8	0	.	90
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36230363	36230363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARAP2	NM_015230	exon2	c.A746G	p.Q249R	.	.	193	39	170	0	.	93
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131797718	131797718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARHGEF4	NM_032995	exon7	c.C877T	p.L293F	.	.	26	6	31	0	.	292
ARID5B	84159	bcgsc.ca	37	10	63845541	63845541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARID5B	NM_032199	exon9	c.A1280G	p.N427S	.	.	75	4	68	1	.	94
ARNTL2	56938	bcgsc.ca	37	12	27555595	27555595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ARNTL2	NM_020183	exon13	c.T1462C	p.S488P	.	.	45	4	39	0	.	92
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	197094016	197094016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ASPM	NM_001206846	exon12	c.T3152C	p.I1051T	.	.	201	15	127	0	.	615
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980355	23980355	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ATAD2B	NM_017552	exon25	c.T4011C	p.C1337C	.	.	160	39	167	0	.	68
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117075032	117075032	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ATRNL1	NM_207303	exon18	c.A2823T	p.Q941H	.	.	71	14	63	0	.	96
BATF2	116071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64757247	64757247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BATF2	NM_138456	exon3	c.G179T	p.R60L	.	.	59	10	61	0	.	91
BCR	613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	23656199	23656199	+	Missense_Mutation	SNP	C	C	G	rs200185744	alternate_allele	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BCR	NM_004327	exon21	c.C3502G	p.L1168V	.	.	25	7	36	0	C|0.999;T|0.000	1349
BPNT1	10380	ucsc.edu	37	1	220231275	220231275	+	RNA	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BPNT1	.	.	.	.	.	.	142	1	97	0	.	91
BRPF1	7862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9776140	9776140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BRPF1	NM_001003694	exon2	c.C316T	p.R106C	.	.	68	7	59	0	.	92
BSCL2	26580	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62458597	62458597	+	Missense_Mutation	SNP	C	C	T	rs144725547		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	BSCL2	NM_001122955	exon8	c.G1022A	p.R341K	.	.	76	16	100	0	C|1.000;T|0.000	514
C1orf173	127254	bcgsc.ca	37	1	75037869	75037869	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	C1orf173	NM_001002912	exon14	c.A3525G	p.K1175K	.	.	73	4	94	0	.	94
C1orf173	127254	bcgsc.ca	37	1	75078388	75078388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	C1orf173	NM_001002912	exon9	c.A1106G	p.K369R	.	.	58	4	67	0	.	94
C9orf64	84267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86571248	86571248	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	C9orf64	NM_032307	exon1	c.C168T	p.N56N	.	.	55	8	54	0	.	90
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37098516	37098516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CACNG2	NM_006078	exon1	c.T106A	p.S36T	.	.	162	32	174	0	.	90
CALU	813	bcgsc.ca	37	7	128399881	128399881	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CALU	NM_001199671	exon6	c.T642C	p.G214G	.	.	79	4	82	0	.	90
CBFB	865	bcgsc.ca	37	16	67070601	67070601	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CBFB	NM_022845	exon3	c.A225G	p.G75G	.	.	62	5	48	0	.	721
CCDC150	284992	broad.mit.edu	37	2	197521765	197521765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001080539	exon4	c.C481T	p.R161C	.	.	88	3	74	0	.	.
CCSER2	54462	broad.mit.edu	37	10	86131833	86131833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_018999	exon2	c.C1025T	p.S342L	.	.	163	4	133	0	.	.
CD5	921	mdanderson.org	37	11	60891407	60891407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CD5	NM_014207	exon8	c.A1277G	p.N426S	.	.	18	3	14	0	.	91
CDC16	8881	broad.mit.edu	37	13	115007650	115007650	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CDC16	NM_003903	exon6	c.C436T	p.R146X	.	.	82	3	93	0	.	226
CENPJ	55835	bcgsc.ca	37	13	25484035	25484035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CENPJ	NM_018451	exon4	c.T758C	p.V253A	.	.	47	4	64	0	.	92
CEP135	9662	bcgsc.ca	37	4	56874503	56874503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CEP135	NM_025009	exon18	c.T2291C	p.V764A	.	.	57	4	59	0	.	94
CFHR5	81494	broad.mit.edu	37	1	196973792	196973792	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CFHR5	NM_030787	exon9	c.G1332C	p.E444D	.	.	136	4	99	0	.	154
CHML	1122	broad.mit.edu;ucsc.edu	37	1	241798393	241798393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CHML	NM_001821	exon1	c.G676A	p.G226S	.	.	153	22	99	1	.	96
CHRNE	1145	broad.mit.edu;mdanderson.org	37	17	4802334	4802334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CHRNE	NM_000080	exon11	c.G1288T	p.V430L	.	.	26	4	19	0	.	90
CKAP2L	150468	broad.mit.edu;bcgsc.ca	37	2	113513757	113513757	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CKAP2L	NM_152515	exon4	c.A1191G	p.R397R	.	.	248	6	223	0	.	90
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51287547	51287547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	COBL	NM_015198	exon2	c.G136A	p.G46R	.	.	62	10	74	0	.	95
COL11A1	1301	broad.mit.edu	37	1	103379951	103379951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	COL11A1	NM_080629	exon52	c.G3971A	p.G1324D	.	.	112	4	121	0	.	586
CTNNB1	1499	broad.mit.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	T	rs28931588	bycluster	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94T	p.D32Y	.	.	176	4	188	0	G|1.000;T|0.000	24361
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	A	rs28931589	bycluster	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101A	p.G34E	.	.	174	30	192	0	G|1.000;T|0.000	24361
CYP2E1	1571	broad.mit.edu	37	10	135351315	135351315	+	Missense_Mutation	SNP	C	C	T	rs200177135	alternate_allele	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	CYP2E1	NM_000773	exon8	c.C1216T	p.P406S	.	.	85	3	83	0	C|0.999;G|0.001	514
DALRD3	55152	mdanderson.org	37	3	49055948	49055948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DALRD3	NM_001009996	exon1	c.C50T	p.A17V	.	.	16	3	12	0	.	90
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134152221	134152221	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DDX46	NM_014829	exon19	c.T2538A	p.A846A	.	.	67	12	69	0	.	227
DGUOK	1716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74185303	74185303	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DGUOK	NM_080916	exon6	c.A738G	p.P246P	.	.	174	36	147	0	.	115
DIXDC1	85458	bcgsc.ca	37	11	111887498	111887498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DIXDC1	.	.	.	.	.	.	73	4	84	0	.	91
DLC1	10395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	13259101	13259101	+	Missense_Mutation	SNP	G	G	A	rs144283917	byfrequency	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DLC1	NM_182643	exon3	c.C1051T	p.R351W	.	.	55	9	95	0	G|1.000;A|0.000	657
DLG3	1741	broad.mit.edu	37	X	69719817	69719817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DLG3	NM_021120	exon16	c.A2063G	p.D688G	.	.	94	4	80	0	.	219
DPF1	8193	bcgsc.ca	37	19	38709265	38709265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	DPF1	NM_001135155	exon5	c.T545C	p.V182A	.	.	78	4	79	0	.	90
ECT2L	345930	bcgsc.ca	37	6	139207998	139207998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ECT2L	NM_001195037	exon18	c.A2264G	p.K755R	.	.	45	4	57	0	.	22
EPSTI1	94240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	43566129	43566129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	EPSTI1	NM_001002264	exon1	c.A173G	p.H58R	.	.	41	4	53	1	.	91
EYS	346007	broad.mit.edu	37	6	65532587	65532587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	EYS	NM_001142800	exon20	c.A3121G	p.T1041A	.	.	113	4	126	0	.	660
FAM186A	121006	broad.mit.edu	37	12	50746022	50746022	+	Silent	SNP	C	C	G	rs7304692	bycluster;byfrequency;by1000genomes	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FAM186A	NM_001145475	exon4	c.G4593C	p.L1531L	.	.	107	11	89	0	C|0.942;G|0.058	68
FAM90A1	55138	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8375287	8375287	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FAM90A1	NM_018088	exon7	c.A526G	p.R176G	.	.	36	5	23	0	.	91
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89844660	89844660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FANCI	NM_001113378	exon27	c.C2993T	p.P998L	.	.	94	27	88	0	.	92
FBL	2091	broad.mit.edu	37	19	40325385	40325385	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FBL	NM_001436	exon8	c.G864A	p.Q288Q	.	.	70	3	79	0	.	91
FCHSD2	9873	bcgsc.ca	37	11	72598587	72598587	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FCHSD2	NM_014824	exon12	c.T1074C	p.A358A	.	.	104	4	78	0	.	228
FGA	2243	broad.mit.edu	37	4	155505364	155505364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	FGA	NM_000508	exon6	c.A2513G	p.E838G	.	.	130	4	109	0	.	93
GLIS1	148979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53974802	53974802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GLIS1	NM_147193	exon9	c.C1696T	p.P566S	.	.	56	9	39	0	.	91
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19745495	19745495	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GMIP	NM_016573	exon18	c.C1905G	p.I635M	.	.	79	8	81	0	.	91
GPR17	2840	ucsc.edu;bcgsc.ca	37	2	128408409	128408409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GPR17	NM_005291	exon3	c.T184C	p.F62L	.	.	35	4	60	0	.	514
GPR173	54328	bcgsc.ca	37	X	53106333	53106333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GPR173	NM_018969	exon2	c.A530G	p.E177G	.	.	62	5	32	0	.	130
GPR89A	653519	broad.mit.edu	37	1	145816727	145816727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GPR89A	NM_001097612	exon3	c.T116C	p.V39A	.	.	1379	6	1092	1	.	90
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11738862	11738862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	GREB1	NM_014668	exon15	c.C2209G	p.Q737E	.	.	87	25	85	0	.	91
HERC6	55008	hgsc.bcm.edu	37	4	89300268	89300268	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	HERC6	NM_017912	exon1	c.G195A	p.L65L	.	.	9	9	0	0	.	658
HEY1	23462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	80679323	80679323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	HEY1	NM_012258	exon3	c.T170G	p.I57S	.	.	79	16	74	0	.	658
HHLA1	10086	bcgsc.ca	37	8	133092116	133092116	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001145095	exon10	c.A774G	p.T258T	.	.	201	8	195	2	.	.
HLA-DMA	3108	bcgsc.ca	37	6	32917125	32917125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	HLA-DMA	NM_006120	exon4	c.T704C	p.V235A	.	.	53	4	48	0	.	90
HNRNPH1	3187	bcgsc.ca	37	5	179048376	179048376	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	HNRNPH1	NM_001257293	exon3	c.T120C	p.A40A	.	.	166	6	162	0	.	22
IGFL1	374918	broad.mit.edu	37	19	46733653	46733653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_198541	exon3	c.A202G	p.T68A	.	.	53	4	71	0	.	.
IL18RAP	8807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	103039738	103039738	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	IL18RAP	NM_003853	exon3	c.A1T	p.M1L	.	.	185	44	195	0	.	95
IL2RB	3560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37524431	37524431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	IL2RB	NM_000878	exon10	c.G1361A	p.R454K	.	.	32	8	25	0	.	90
ITPR1	3708	broad.mit.edu	37	3	4847814	4847814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ITPR1	NM_001168272	exon54	c.A7090G	p.S2364G	.	.	207	5	155	0	.	710
KCNH5	27133	broad.mit.edu	37	14	63174701	63174701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KCNH5	NM_139318	exon11	c.T2492C	p.V831A	.	.	194	5	248	1	.	98
KCNMA1	3778	bcgsc.ca	37	10	78799360	78799360	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KCNMA1	NM_002247	exon15	c.A1785G	p.E595E	.	.	102	5	128	0	.	93
KCP	375616	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	128517710	128517710	+	RNA	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KCP	.	.	.	.	.	.	103	30	117	0	.	68
KIF1C	10749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4923807	4923807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KIF1C	NM_006612	exon20	c.A1771G	p.K591E	.	.	61	10	50	0	.	92
KRT19P2	160313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	95228694	95228694	+	RNA	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	.	.	.	.	.	.	37	10	32	0	.	.
KRTAP17-1	83902	mdanderson.org	37	17	39471774	39471774	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	KRTAP17-1	NM_031964	exon1	c.C129T	p.C43C	.	.	20	3	10	0	.	68
L3MBTL3	84456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	130455007	130455007	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	L3MBTL3	NM_032438	exon22	c.G2156C	p.S719T	.	.	30	6	62	0	.	96
LRP1B	53353	broad.mit.edu;bcgsc.ca	37	2	141143523	141143523	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	LRP1B	NM_018557	exon67	c.C10470T	p.P3490P	.	.	163	5	139	0	.	311
MAML2	84441	broad.mit.edu	37	11	95826434	95826434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MAML2	NM_032427	exon2	c.G761A	p.G254D	.	.	222	4	206	0	.	850
METTL10	399818	broad.mit.edu;bcgsc.ca	37	10	126454118	126454118	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	METTL10	NM_212554	exon5	c.A459G	p.K153K	.	.	113	5	102	0	.	22
MMP2	4313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55517934	55517934	+	Silent	SNP	T	T	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MMP2	NM_004530	exon3	c.T387A	p.I129I	.	.	80	21	72	0	.	1149
MPHOSPH10	10199	bcgsc.ca	37	2	71368372	71368372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MPHOSPH10	NM_005791	exon7	c.A1319G	p.D440G	.	.	164	5	139	0	.	93
MRPS24	64951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43906467	43906467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MRPS24	NM_032014	exon4	c.G335A	p.R112H	.	.	52	11	41	0	.	90
MS4A12	54860	bcgsc.ca	37	11	60265008	60265008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MS4A12	NM_017716	exon2	c.A217G	p.I73V	.	.	111	5	105	0	.	90
MYBPC3	4607	broad.mit.edu;bcgsc.ca	37	11	47368980	47368980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	MYBPC3	NM_000256	exon9	c.A902G	p.K301R	.	.	51	4	57	0	.	92
N4BP2L2	10443	broad.mit.edu;bcgsc.ca	37	13	33110778	33110778	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	N4BP2L2	NM_014887	exon2	c.A387G	p.K129K	.	.	110	5	139	0	.	68
NABP2	79035	bcgsc.ca	37	12	56620184	56620184	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_024068	exon6	c.A417G	p.G139G	.	.	81	6	91	0	.	.
NAGA	4668	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42456385	42456385	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NAGA	NM_000262	exon9	c.T1134A	p.S378R	.	.	32	5	45	0	.	90
NCOR1	9611	bcgsc.ca	37	17	16040658	16040658	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NCOR1	NM_001190440	exon13	c.A1476G	p.R492R	.	.	57	4	67	0	.	229
NFATC4	4776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24843036	24843036	+	Silent	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NFATC4	NM_001198967	exon6	c.C1884A	p.V628V	.	.	59	12	70	1	.	92
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119044251	119044251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NLRX1	NM_024618	exon5	c.G293A	p.R98H	.	.	40	9	41	0	.	92
NOMO2	283820	broad.mit.edu	37	16	18554991	18554991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NOMO2	NM_173614	exon7	c.A683G	p.E228G	.	.	500	7	564	3	.	23
NPY2R	4887	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156135479	156135479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NPY2R	NM_000910	exon2	c.C388A	p.Q130K	.	.	47	6	42	1	.	523
NUDT11	55190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51238814	51238814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	NUDT11	NM_018159	exon1	c.T483G	p.D161E	.	.	234	134	173	1	.	130
PALMD	54873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	100154970	100154970	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PALMD	NM_017734	exon7	c.C1154G	p.S385X	.	.	77	19	88	0	.	71
PARD6B	84612	bcgsc.ca	37	20	49366589	49366589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PARD6B	NM_032521	exon3	c.T683C	p.L228P	.	.	85	4	101	0	.	91
PCNX	22990	broad.mit.edu;bcgsc.ca	37	14	71443876	71443876	+	Silent	SNP	T	T	C	rs141883113		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PCNX	NM_014982	exon6	c.T822C	p.Y274Y	.	.	123	5	140	0	T|0.998;C|0.002	91
PDE6A	5145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149324082	149324082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PDE6A	NM_000440	exon1	c.C155T	p.P52L	.	.	48	9	59	0	.	92
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	239161713	239161713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PER2	NM_022817	exon19	c.G2951T	p.R984L	.	.	56	14	61	0	.	154
PKHD1L1	93035	broad.mit.edu	37	8	110519933	110519933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PKHD1L1	NM_177531	exon69	c.C11036T	p.A3679V	.	.	323	4	194	0	.	145
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186880477	186880477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PLA2G4A	NM_024420	exon7	c.C514T	p.L172F	.	.	133	24	124	0	.	721
POM121L9P	29774	broad.mit.edu	37	22	24659809	24659809	+	RNA	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	.	.	.	.	.	.	29	6	18	0	.	.
POM121L9P	29774	broad.mit.edu	37	22	24659813	24659813	+	RNA	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	.	.	.	.	.	.	27	5	20	0	.	.
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63195713	63195713	+	Silent	SNP	G	G	A	rs201542231		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PPM1H	NM_020700	exon3	c.C639T	p.R213R	.	.	14	7	21	0	G|0.999;A|0.000	637
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46890688	46890688	+	Silent	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PPP5C	NM_006247	exon9	c.G1113A	p.R371R	.	.	47	13	44	0	.	227
PPWD1	23398	broad.mit.edu	37	5	64859260	64859260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PPWD1	NM_015342	exon1	c.G123T	p.E41D	.	.	76	4	97	0	.	91
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47307560	47307560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PREX1	NM_020820	exon9	c.G1111T	p.V371F	.	.	132	30	131	0	.	231
PSMD10	5716	broad.mit.edu	37	X	107328349	107328349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PSMD10	NM_002814	exon5	c.C536T	p.A179V	.	.	213	4	134	0	.	227
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40944364	40944364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PTPRT	NM_007050	exon12	c.G2138A	p.G713E	.	.	86	13	110	0	.	664
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64522286	64522286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	PYGM	NM_005609	exon8	c.G878A	p.R293Q	.	.	29	8	38	0	.	92
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	53536345	53536345	+	Silent	SNP	T	T	C	rs145350535		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RB1CC1	NM_014781	exon24	c.A4782G	p.V1594V	.	.	99	19	72	0	T|1.000;C|0.000	170
RETSAT	54884	broad.mit.edu	37	2	85570798	85570798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RETSAT	NM_017750	exon10	c.A1657G	p.R553G	.	.	194	5	195	0	.	70
REXO4	57109	broad.mit.edu	37	9	136276104	136276104	+	Splice_Site	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	REXO4	NM_020385	exon6	c.999+1G>A	.	.	.	67	3	87	0	.	90
RPA3	6119	broad.mit.edu	37	7	7677548	7677548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RPA3	NM_002947	exon7	c.C230T	p.A77V	.	.	110	3	111	0	.	153
RPP30	10556	broad.mit.edu;bcgsc.ca	37	10	92635370	92635370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RPP30	NM_006413	exon3	c.A194G	p.Q65R	.	.	109	5	111	0	.	226
RUNDC3B	154661	broad.mit.edu	37	7	87407168	87407168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	RUNDC3B	NM_138290	exon9	c.T904C	p.S302P	.	.	138	4	134	0	.	69
SARS2	54938	broad.mit.edu	37	19	39406698	39406698	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SARS2	NM_001145901	exon15	c.G1332A	p.G444G	.	.	39	4	25	0	.	93
SCG2	7857	broad.mit.edu	37	2	224462240	224462240	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SCG2	NM_003469	exon2	c.A1761G	p.E587E	.	.	179	5	173	1	.	69
SCN5A	6331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38597244	38597244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SCN5A	NM_198056	exon26	c.G4445T	p.G1482V	.	.	116	14	122	0	.	98
SCN7A	6332	broad.mit.edu;bcgsc.ca	37	2	167300087	167300087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SCN7A	NM_002976	exon13	c.A1726G	p.I576V	.	.	158	5	142	0	.	67
SDS	10993	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113834987	113834988	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SDS	NM_006843	exon6	c.636_637insA	p.S212fs	.	.	69	12	84	0	.	91
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83592651	83592651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SEMA3A	NM_006080	exon16	c.G1730A	p.G577D	.	.	62	10	75	0	.	156
SERPINA3	12	broad.mit.edu	37	14	95080847	95080847	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SERPINA3	NM_001085	exon2	c.C69T	p.C23C	.	.	35	3	51	0	.	653
SIN3B	23309	broad.mit.edu	37	19	16976267	16976267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SIN3B	NM_015260	exon12	c.A1526G	p.E509G	.	.	92	6	86	0	.	228
SLC22A4	6583	ucsc.edu	37	5	131679562	131679562	+	RNA	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SLC22A4	.	.	.	.	.	.	176	41	138	0	.	90
SLC2A6	11182	bcgsc.ca;mdanderson.org	37	9	136340664	136340664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SLC2A6	NM_017585	exon5	c.T632C	p.L211P	.	.	13	3	20	0	.	90
SLIT1	6585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98761962	98761962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SLIT1	NM_003061	exon36	c.C4319T	p.A1440V	.	.	35	9	43	0	.	94
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24798144	24798144	+	Silent	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPATA13	NM_001166271	exon2	c.C1077T	p.D359D	.	.	34	11	29	0	.	229
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220326612	220326612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPEG	NM_005876	exon7	c.A2449G	p.T817A	.	.	75	15	76	0	.	383
SPTAN1	6709	broad.mit.edu;mdanderson.org	37	9	131386761	131386761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPTAN1	NM_001130438	exon46	c.G5987T	p.W1996L	.	.	27	7	25	0	.	158
SPTY2D1	144108	bcgsc.ca	37	11	18638439	18638439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	SPTY2D1	NM_194285	exon2	c.A158G	p.E53G	.	.	148	5	162	0	.	90
SYNE4	163183	bcgsc.ca	37	19	36494534	36494534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001039876	exon7	c.A1012G	p.R338G	.	.	76	4	71	0	.	.
TBC1D7	51256	broad.mit.edu;mdanderson.org	37	6	13321159	13321159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TBC1D7	NM_001143965	exon4	c.G362T	p.R121L	.	.	41	7	37	0	.	91
TBCCD1	55171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186269064	186269064	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TBCCD1	NM_001134415	exon7	c.C1549A	p.Q517K	.	.	108	19	94	0	.	108
TFR2	7036	mdanderson.org	37	7	100226987	100226987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TFR2	NM_003227	exon10	c.G1279A	p.V427I	.	.	19	3	15	0	.	92
THAP3	90326	broad.mit.edu;bcgsc.ca	37	1	6692557	6692557	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	THAP3	NM_001195753	exon5	c.438+2T>C	.	.	.	60	4	72	1	.	514
TM9SF4	9777	broad.mit.edu	37	20	30720895	30720895	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TM9SF4	NM_014742	exon2	c.T95C	p.I32T	.	.	80	4	75	0	.	514
TMED7-TICAM2	100302736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114952130	114952130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001164468	exon3	c.T451C	p.C151R	.	.	121	25	87	0	.	.
TMEM259	91304	broad.mit.edu	37	19	1014474	1014474	+	Splice_Site	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_033420	exon3	c.226-2A>G	.	.	.	53	4	37	0	.	.
TNIK	23043	broad.mit.edu	37	3	170884979	170884979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TNIK	NM_001161562	exon10	c.A854G	p.K285R	.	.	156	4	170	1	.	550
TPRX1	284355	broad.mit.edu	37	19	48305670	48305670	+	Missense_Mutation	SNP	A	A	G	rs201483839		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TPRX1	NM_198479	exon2	c.T598C	p.S200P	.	.	43	8	37	2	.	90
TSC2	7249	broad.mit.edu	37	16	2098752	2098752	+	Nonsense_Mutation	SNP	A	A	T	rs137854266		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	TSC2	NM_001114382	exon2	c.A136T	p.R46X	.	.	77	5	102	0	.	1908
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42612241	42612241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	UBR2	NM_015255	exon20	c.G2251A	p.E751K	.	.	96	22	64	0	.	94
UNC80	285175	bcgsc.ca	37	2	210769487	210769487	+	Splice_Site	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	UNC80	NM_032504	exon28	c.4384-2A>G	.	.	.	74	4	79	0	.	90
VPS13C	54832	bcgsc.ca	37	15	62232942	62232942	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	VPS13C	NM_020821	exon47	c.A5505G	p.P1835P	.	.	62	4	61	0	.	92
WDHD1	11169	broad.mit.edu	37	14	55462526	55462526	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	WDHD1	NM_007086	exon11	c.T948C	p.S316S	.	.	75	3	87	0	.	91
XPC	7508	broad.mit.edu	37	3	14200223	14200223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	XPC,NS,carcinoma,0	XPC	NM_004628	exon9	c.A1160G	p.K387R	.	.	159	4	132	0	.	662
ZC3H13	23091	bcgsc.ca	37	13	46539455	46539455	+	Silent	SNP	T	T	C	rs116386585	byfrequency	TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZC3H13	NM_015070	exon16	c.A4434G	p.A1478A	.	.	137	5	201	0	T|0.999;C|0.001	92
ZNF547	284306	broad.mit.edu	37	19	57889059	57889059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZNF547	NM_173631	exon4	c.C715T	p.P239S	.	.	87	4	100	0	.	91
ZNF629	23361	ucsc.edu;bcgsc.ca	37	16	30793870	30793870	+	Silent	SNP	T	T	C	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	.	NM_001080417	exon3	c.A1779G	p.G593G	.	.	42	4	60	0	.	.
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53669326	53669326	+	Silent	SNP	A	A	G	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZNF665	NM_024733	exon4	c.T417C	p.N139N	.	.	162	42	138	0	.	70
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53747007	53747007	+	Silent	SNP	A	A	T	novel		TCGA-EP-A3RK-01A-11D-A22F-10	TCGA-EP-A3RK-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d259ac2-03d1-4814-9b0b-d05e3a6029b7	f4ebcdb4-5fcb-4fbc-bb8c-d961ef98312b	.	ZNF677	NM_182609	exon4	c.T159A	p.P53P	.	.	82	21	71	0	.	91
