Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS	16	bcgsc.ca	37	16	70304195	70304195	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AARS	NM_001605	exon6	c.A720G	p.T240T	.	.	147	5	296	1	.	91
AARS	16	hgsc.bcm.edu;bcgsc.ca	37	16	70292100	70292100	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AARS	NM_001605	exon15	c.C2013T	p.C671C	.	.	70	4	117	0	.	91
ABCA2	20	hgsc.bcm.edu	37	9	139910924	139910924	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCA2	NM_212533	exon22	c.3014-1G>T	.	.	.	95	4	144	0	.	90
ABCB1	5243	hgsc.bcm.edu;bcgsc.ca	37	7	87214929	87214929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCB1	NM_000927	exon5	c.G185T	p.G62V	.	.	116	6	106	0	.	582
ABCC9	10060	bcgsc.ca	37	12	21981919	21981919	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABCC9	NM_005691	exon29	c.T3642C	p.A1214A	.	.	132	5	182	0	.	96
ABI1	10006	hgsc.bcm.edu	37	10	27044647	27044647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABI1	NM_005470	exon10	c.C1102A	p.P368T	.	.	84	4	85	0	.	1082
ABP1	26	hgsc.bcm.edu	37	7	150553813	150553813	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ABP1	NM_001091	exon2	c.T255C	p.F85F	.	.	92	4	121	0	.	139
ACACB	32	bcgsc.ca	37	12	109654670	109654670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACACB	NM_001093	exon23	c.G3509A	p.C1170Y	.	.	135	5	199	0	.	98
ACHE	43	hgsc.bcm.edu;bcgsc.ca	37	7	100487872	100487872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACHE	NM_000665	exon5	c.A1808G	p.D603G	.	.	141	6	207	0	.	92
ACOX1	51	hgsc.bcm.edu;bcgsc.ca	37	17	73944528	73944528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACOX1	NM_007292	exon13	c.T1739C	p.M580T	.	.	69	4	53	0	.	91
ACTL8	81569	hgsc.bcm.edu	37	1	18152877	18152877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ACTL8	NM_030812	exon3	c.T964C	p.S322P	.	.	100	4	199	0	.	72
ADAMTS19	171019	bcgsc.ca	37	5	128994351	128994351	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS19	NM_133638	exon15	c.A2328G	p.E776E	.	.	149	5	222	0	.	295
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847742	43847742	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADAMTS20,brain,glioma,-1	ADAMTS20	NM_025003	exon12	c.C1728T	p.I576I	.	.	76	46	105	0	.	795
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43847776	43847776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS20	NM_025003	exon12	c.A1694G	p.Y565C	.	.	87	47	114	0	.	795
ADAMTS5	11096	hgsc.bcm.edu	37	21	28296469	28296469	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ADAMTS5,NS,NS,0	ADAMTS5	NM_007038	exon8	c.C2696T	p.T899M	.	.	47	2	45	0	.	229
ADAMTS9	56999	hgsc.bcm.edu	37	3	64599079	64599079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTS9	NM_182920	exon22	c.C3296A	p.S1099Y	.	.	94	4	111	0	.	230
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18829938	18829938	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL1	NM_001040272	exon23	c.A4212G	p.T1404T	.	.	96	4	139	0	.	230
ADAMTSL3	57188	hgsc.bcm.edu;bcgsc.ca	37	15	84694002	84694002	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAMTSL3	NM_207517	exon27	c.T4470C	p.S1490S	.	.	54	5	106	0	.	1153
ADARB2	105	hgsc.bcm.edu	37	10	1229197	1229197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADARB2	NM_018702	exon10	c.A2156G	p.K719R	.	.	125	5	176	0	.	153
ADAT2	134637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	143755117	143755117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADAT2	NM_182503	exon3	c.C203T	p.A68V	.	.	25	17	37	0	.	90
ADCY7	113	bcgsc.ca	37	16	50326666	50326666	+	Missense_Mutation	SNP	G	G	T	rs138459146	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCY7	NM_001114	exon4	c.G617T	p.R206L	.	.	53	4	112	0	G|0.999;A|0.001	91
ADCY8	114	hgsc.bcm.edu;bcgsc.ca	37	8	131795974	131795974	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCY8	NM_001115	exon17	c.C3231A	p.I1077I	.	.	110	6	115	0	.	157
ADCYAP1R1	117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	31125006	31125006	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADCYAP1R1	NM_001118	exon9	c.A618G	p.K206K	.	.	39	4	39	0	.	91
ADRA2C	152	hgsc.bcm.edu	37	4	3768868	3768868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ADRA2C	NM_000683	exon1	c.T535C	p.S179P	.	.	91	5	157	0	.	522
AFF1	4299	hgsc.bcm.edu	37	4	87967360	87967360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AFF1	NM_001166693	exon3	c.G81T	p.K27N	.	.	99	4	148	0	.	289
AFF2	2334	hgsc.bcm.edu	37	X	148062276	148062276	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AFF2	NM_002025	exon19	c.T3579C	p.A1193A	.	.	73	4	48	0	.	135
AGBL1	123624	hgsc.bcm.edu;bcgsc.ca	37	15	87097688	87097688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152336	exon20	c.G2776T	p.V926L	.	.	103	5	133	0	.	.
AGPAT9	84803	hgsc.bcm.edu	37	4	84519219	84519219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AGPAT9	NM_001256421	exon11	c.G1012T	p.G338C	.	.	45	4	44	0	.	91
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	11	62300901	62300901	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AHNAK	NM_001620	exon5	c.A988G	p.R330G	.	.	76	4	106	0	.	109
AIM1	202	hgsc.bcm.edu;bcgsc.ca	37	6	106999726	106999726	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AIM1	NM_001624	exon12	c.4089-1G>T	.	.	.	98	4	161	0	.	139
AKAP4	8852	hgsc.bcm.edu	37	X	49955744	49955744	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKAP4	NM_003886	exon6	c.A2424G	p.S808S	.	.	83	4	132	0	.	540
AKT2	208	hgsc.bcm.edu;bcgsc.ca	37	19	40761108	40761108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AKT2	NM_001626	exon4	c.A244G	p.T82A	.	.	121	6	138	0	.	978
ALB	213	hgsc.bcm.edu;bcgsc.ca	37	4	74275126	74275126	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.T537C	p.L179L	.	.	294	173	388	0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74275125	74275126	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.536_537insC	p.L179fs	.	.	297	155	388	0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74275205	74275205	+	Splice_Site	SNP	G	G	A	rs75828235	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALB	NM_000477	exon5	c.615+1G>A	.	.	.	144	41	198	0	.	96
ALDH1L2	160428	hgsc.bcm.edu	37	12	105428158	105428158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALDH1L2	NM_001034173	exon19	c.T2164C	p.F722L	.	.	122	5	162	0	.	91
ALDH3B1	221	hgsc.bcm.edu	37	11	67787182	67787182	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001161473	exon6	c.480-2A>G	.	.	.	98	4	211	0	.	.
ALS2	57679	hgsc.bcm.edu	37	2	202568849	202568849	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ALS2	NM_020919	exon33	c.T4931C	p.L1644S	.	.	112	6	123	0	.	275
AMBRA1	55626	hgsc.bcm.edu;bcgsc.ca	37	11	46569854	46569854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMBRA1	NM_001267783	exon2	c.A77G	p.Q26R	.	.	97	5	160	0	.	136
AMDHD2	51005	hgsc.bcm.edu	37	16	2580390	2580390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMDHD2	NM_001145815	exon11	c.T1415C	p.M472T	.	.	78	4	167	0	.	155
AMMECR1L	83607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128628438	128628438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMMECR1L	NM_031445	exon5	c.G583A	p.V195I	.	.	125	70	157	0	.	90
AMOTL1	154810	hgsc.bcm.edu;bcgsc.ca	37	11	94602390	94602390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AMOTL1	NM_130847	exon12	c.A2516G	p.E839G	.	.	93	5	108	0	.	91
ANKRD29	147463	hgsc.bcm.edu	37	18	21214039	21214039	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD29	NM_173505	exon5	c.A405G	p.G135G	.	.	104	5	169	0	.	156
ANKRD44	91526	hgsc.bcm.edu;bcgsc.ca	37	2	197954757	197954757	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ANKRD44	NM_001195144	exon12	c.1101-1G>T	.	.	.	105	5	95	0	.	230
AP3B2	8120	hgsc.bcm.edu	37	15	83358199	83358199	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AP3B2	NM_004644	exon2	c.T120C	p.D40D	.	.	95	4	136	0	.	94
AP4M1	9179	hgsc.bcm.edu	37	7	99703069	99703069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AP4M1	NM_004722	exon11	c.T836C	p.L279P	.	.	90	4	117	0	.	90
APBA3	9546	hgsc.bcm.edu;bcgsc.ca	37	19	3754233	3754233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	APBA3	NM_004886	exon4	c.C722T	p.T241M	.	.	69	4	76	0	.	90
AQP1	358	bcgsc.ca	37	7	30962229	30962229	+	Silent	SNP	G	G	T	rs147503533	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AQP1	NM_198098	exon3	c.G600T	p.A200A	.	.	160	6	190	0	G|1.000;A|0.000	514
ARHGAP18	93663	hgsc.bcm.edu	37	6	129950526	129950526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP18	NM_033515	exon5	c.A758G	p.K253R	.	.	89	4	158	0	.	230
ARHGAP22	58504	hgsc.bcm.edu	37	10	49667827	49667827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP22	NM_001256024	exon5	c.G607A	p.G203R	.	.	97	4	120	0	.	228
ARHGAP25	9938	hgsc.bcm.edu;bcgsc.ca	37	2	69043419	69043419	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP25	NM_001166277	exon6	c.688-2A>G	.	.	.	78	4	88	0	.	274
ARHGAP31	57514	hgsc.bcm.edu	37	3	119109740	119109740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP31	NM_020754	exon7	c.C791T	p.A264V	.	.	94	4	118	0	.	92
ARHGAP35	2909	hgsc.bcm.edu	37	19	47423542	47423542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_004491	exon1	c.A1610G	p.Q537R	.	.	92	5	68	0	.	.
ARHGAP42	143872	hgsc.bcm.edu	37	11	100843960	100843960	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152432	exon18	c.A1605G	p.I535M	.	.	75	5	123	0	.	.
ARHGAP6	395	bcgsc.ca	37	X	11162322	11162322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGAP6	NM_006125	exon11	c.A1954G	p.R652G	.	.	55	4	64	0	.	227
ARHGEF28	64283	hgsc.bcm.edu	37	5	73189069	73189069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080479	exon28	c.A3614G	p.K1205R	.	.	97	4	152	0	.	.
ARHGEF2	9181	hgsc.bcm.edu;bcgsc.ca	37	1	155927648	155927648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARHGEF2	NM_001162383	exon13	c.A1571G	p.Q524R	.	.	101	5	131	0	.	228
ARIH1	25820	hgsc.bcm.edu	37	15	72859489	72859489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARIH1	NM_005744	exon9	c.A997G	p.T333A	.	.	149	6	196	0	.	226
ARL15	54622	bcgsc.ca	37	5	53182406	53182406	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARL15	NM_019087	exon5	c.A600G	p.E200E	.	.	153	5	310	1	.	91
ARTN	9048	hgsc.bcm.edu;bcgsc.ca	37	1	44401362	44401362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ARTN	NM_001136215	exon2	c.T34C	p.S12P	.	.	103	5	192	0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131130888	131130888	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP1	NM_018482	exon19	c.T1641C	p.Y547Y	.	.	263	72	177	0	.	95
ASAP3	55616	hgsc.bcm.edu	37	1	23762411	23762411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASAP3	NM_017707	exon17	c.T1682C	p.L561P	.	.	79	4	159	0	.	155
ASB16	92591	hgsc.bcm.edu;bcgsc.ca	37	17	42255627	42255627	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASB16	NM_080863	exon5	c.C1231T	p.L411L	.	.	54	4	77	0	.	227
ASPM	259266	broad.mit.edu	37	1	197093268	197093268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ASPM	NM_001206846	exon13	c.A3362G	p.N1121S	.	.	458	6	529	1	.	615
ATAD2	29028	broad.mit.edu	37	8	124340694	124340694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATAD2	NM_014109	exon25	c.A3604G	p.T1202A	.	.	1029	7	829	0	.	92
ATF6B	1388	hgsc.bcm.edu	37	6	32085736	32085736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATF6B	NM_004381	exon12	c.T1324C	p.F442L	.	.	91	4	137	0	.	90
ATG2A	23130	hgsc.bcm.edu;bcgsc.ca	37	11	64681337	64681337	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATG2A	NM_015104	exon4	c.G546A	p.P182P	.	.	79	4	143	0	.	69
ATP2B1	490	hgsc.bcm.edu	37	12	89997695	89997695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP2B1	NM_001001323	exon16	c.C2642A	p.P881Q	.	.	131	7	168	0	.	516
ATP2B3	492	hgsc.bcm.edu	37	X	152821529	152821529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP2B3	NM_001001344	exon12	c.G2081T	p.C694F	.	.	95	4	72	0	.	109
ATP5F1	515	hgsc.bcm.edu	37	1	111998810	111998810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP5F1	NM_001688	exon4	c.T326C	p.M109T	.	.	90	4	113	0	.	90
ATP8B2	57198	hgsc.bcm.edu	37	1	154317184	154317184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B2	NM_020452	exon21	c.C2308A	p.L770I	.	.	76	4	100	0	.	92
ATP8B4	79895	hgsc.bcm.edu;bcgsc.ca	37	15	50190396	50190396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATP8B4	NM_024837	exon22	c.T2342C	p.M781T	.	.	150	6	129	0	.	140
ATXN7L2	127002	hgsc.bcm.edu	37	1	110031709	110031709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ATXN7L2	NM_153340	exon7	c.T1024C	p.C342R	.	.	91	4	128	0	.	92
AURKB	9212	hgsc.bcm.edu	37	17	8110166	8110166	+	Silent	SNP	G	G	T	rs148133660	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AURKB	NM_004217	exon6	c.C439A	p.R147R	.	.	48	4	147	0	G|1.000;A|0.000	1508
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	364562	364563	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon3	c.999_1000del	p.333_334del	.	.	53	23	135	0	.	684
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	396448	396448	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXIN1	NM_181050	exon2	c.T578A	p.M193K	.	.	114	20	192	0	.	684
AXL	558	bcgsc.ca	37	19	41758269	41758269	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	AXL	NM_021913	exon15	c.G1725T	p.T575T	.	.	155	5	149	0	.	1403
B4GALNT4	338707	hgsc.bcm.edu	37	11	377213	377213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	B4GALNT4	NM_178537	exon14	c.G2090T	p.R697L	.	.	90	4	148	0	.	91
BABAM1	29086	hgsc.bcm.edu	37	19	17384927	17384927	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_014173	exon5	c.G477A	p.L159L	.	.	82	4	90	0	.	.
BAG5	9529	hgsc.bcm.edu	37	14	104026834	104026834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAG5	NM_001015049	exon2	c.T791C	p.L264P	.	.	98	4	146	0	.	229
BAZ2A	11176	hgsc.bcm.edu	37	12	56998905	56998905	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon14	c.G2706A	p.R902R	.	.	83	5	122	0	.	22
BAZ2A	11176	hgsc.bcm.edu;bcgsc.ca	37	12	56993526	56993526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BAZ2A	NM_013449	exon26	c.T5138C	p.V1713A	.	.	55	4	105	0	.	22
BBS4	585	hgsc.bcm.edu	37	15	73028183	73028183	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BBS4	NM_033028	exon14	c.A1124C	p.N375T	.	.	92	4	115	0	.	90
BCAS3	54828	hgsc.bcm.edu	37	17	59152380	59152380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCAS3	NM_001099432	exon21	c.A2174G	p.Q725R	.	.	93	4	84	0	.	495
BCMO1	53630	bcgsc.ca	37	16	81272545	81272545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCMO1	NM_017429	exon1	c.A32G	p.E11G	.	.	140	6	240	2	.	90
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	X	39913172	39913172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BCOR	NM_001123385	exon14	c.C4943A	p.P1648Q	.	.	86	4	135	0	.	229
BEST2	54831	hgsc.bcm.edu	37	19	12866497	12866497	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BEST2	NM_017682	exon6	c.T783C	p.A261A	.	.	150	7	168	0	.	92
BMP3	651	hgsc.bcm.edu	37	4	81967507	81967507	+	Missense_Mutation	SNP	A	A	G	rs138325448		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BMP3	NM_001201	exon2	c.A932G	p.K311R	.	.	92	4	155	0	A|1.000;G|0.000	518
BMPR2	659	hgsc.bcm.edu	37	2	203420956	203420956	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BMPR2	NM_001204	exon12	c.C2568A	p.T856T	.	.	90	5	85	0	.	1003
BOC	91653	hgsc.bcm.edu	37	3	112989741	112989741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BOC	NM_033254	exon6	c.T617C	p.V206A	.	.	89	4	130	0	.	157
BPIFB3	359710	hgsc.bcm.edu	37	20	31657761	31657761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_182658	exon11	c.G1217T	p.R406L	.	.	98	4	80	0	.	.
BPTF	2186	hgsc.bcm.edu	37	17	65960451	65960451	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BPTF	NM_182641	exon25	c.C8385T	p.A2795A	.	.	175	7	179	0	.	94
BRAP	8315	hgsc.bcm.edu;bcgsc.ca	37	12	112098444	112098444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRAP	NM_006768	exon7	c.C932T	p.P311L	.	.	121	5	172	0	.	710
BRPF3	27154	hgsc.bcm.edu	37	6	36175193	36175193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRPF3	NM_015695	exon4	c.G1709T	p.R570L	.	.	136	7	181	0	.	92
BRWD1	54014	hgsc.bcm.edu	37	21	40568902	40568902	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BRWD1	NM_018963	exon41	c.G6093A	p.R2031R	.	.	113	5	139	0	.	94
BSDC1	55108	hgsc.bcm.edu	37	1	32834115	32834115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BSDC1	NM_001143888	exon10	c.A1244G	p.D415G	.	.	94	3	151	0	.	92
BSG	682	hgsc.bcm.edu	37	19	582316	582316	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BSG	NM_001728	exon7	c.C1080A	p.A360A	.	.	74	4	118	0	.	90
BTBD18	643376	hgsc.bcm.edu	37	11	57511709	57511709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001145101	exon3	c.T2036C	p.V679A	.	.	90	4	153	0	.	.
BTG1	694	hgsc.bcm.edu	37	12	92538064	92538064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BTG1	NM_001731	exon2	c.C308T	p.T103I	.	.	83	4	127	0	.	683
BTN2A1	11120	hgsc.bcm.edu	37	6	26463600	26463600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	BTN2A1	NM_001197234	exon4	c.C559T	p.P187S	.	.	67	4	79	0	.	92
C10orf54	64115	hgsc.bcm.edu	37	10	73511594	73511594	+	Silent	SNP	G	G	T	rs201880754	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C10orf54	NM_022153	exon6	c.C729A	p.P243P	.	.	110	5	125	0	G|0.999;A|0.000	515
C10orf71	118461	bcgsc.ca	37	10	50533850	50533850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C10orf71	NM_001135196	exon3	c.A3260G	p.E1087G	.	.	83	5	106	0	.	90
C10orf90	118611	hgsc.bcm.edu	37	10	128114440	128114440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C10orf90	NM_001004298	exon9	c.C2093A	p.A698E	.	.	73	4	80	0	.	92
C12orf42	374470	hgsc.bcm.edu	37	12	103699815	103699815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf42	NM_001099336	exon5	c.A568G	p.I190V	.	.	93	4	132	0	.	91
C12orf4	57102	hgsc.bcm.edu;bcgsc.ca	37	12	4600397	4600397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf4	NM_020374	exon12	c.A1444G	p.M482V	.	.	100	6	119	0	.	226
C12orf66	144577	bcgsc.ca	37	12	64588266	64588266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C12orf66	NM_152440	exon3	c.A694G	p.K232E	.	.	146	5	211	0	.	515
C16orf62	57020	bcgsc.ca	37	16	19620342	19620342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C16orf62	NM_020314	exon11	c.A1195G	p.T399A	.	.	96	4	130	1	.	69
C16orf96	342346	hgsc.bcm.edu;bcgsc.ca	37	16	4626475	4626475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001145011	exon5	c.A1994G	p.Q665R	.	.	93	5	143	0	.	.
C17orf78	284099	hgsc.bcm.edu;bcgsc.ca	37	17	35736083	35736083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173625	exon3	c.A154G	p.T52A	.	.	85	4	99	0	.	.
C18orf8	29919	hgsc.bcm.edu	37	18	21109173	21109173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C18orf8	NM_013326	exon15	c.C1327T	p.P443S	.	.	34	4	60	0	.	91
C19orf47	126526	hgsc.bcm.edu	37	19	40832372	40832372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C19orf47	NM_001256440	exon7	c.A572G	p.E191G	.	.	76	4	93	0	.	92
C1GALT1C1	29071	hgsc.bcm.edu	37	X	119760344	119760344	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1GALT1C1	NM_152692	exon3	c.C678T	p.C226C	.	.	107	6	93	0	.	130
C1orf101	257044	broad.mit.edu	37	1	244755013	244755013	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1orf101	NM_173807	exon15	c.T2169C	p.D723D	.	.	767	9	887	2	.	154
C1orf111	284680	hgsc.bcm.edu	37	1	162344320	162344320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1orf111	NM_182581	exon3	c.T304C	p.F102L	.	.	83	4	142	0	.	69
C1orf114	57821	hgsc.bcm.edu	37	1	169388397	169388397	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C1orf114	NM_021179	exon4	c.G1069T	p.E357X	.	.	59	4	91	0	.	68
C2CD2	25966	bcgsc.ca	37	21	43329606	43329606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C2CD2	NM_015500	exon8	c.T980C	p.L327S	.	.	100	6	154	0	.	91
C2orf42	54980	hgsc.bcm.edu	37	2	70408789	70408789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C2orf42	NM_017880	exon3	c.T329C	p.L110P	.	.	100	4	120	0	.	90
C3orf30	152405	hgsc.bcm.edu	37	3	118870130	118870130	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C3orf30	NM_152539	exon3	c.C1602T	p.C534C	.	.	88	4	100	0	.	92
C5orf34	375444	hgsc.bcm.edu	37	5	43490731	43490731	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C5orf34	NM_198566	exon12	c.1679+2T>C	.	.	.	82	4	128	0	.	153
C6	729	hgsc.bcm.edu;bcgsc.ca	37	5	41186295	41186295	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6	NM_001115131	exon6	c.A603G	p.A201A	.	.	97	4	174	0	.	95
C6orf165	154313	hgsc.bcm.edu	37	6	88128042	88128042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf165	NM_001031743	exon7	c.G748A	p.D250N	.	.	81	4	140	0	.	90
C6orf58	352999	hgsc.bcm.edu;bcgsc.ca	37	6	127902353	127902353	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf58	NM_001010905	exon4	c.T600C	p.F200F	.	.	89	4	128	0	.	90
C6orf70	55780	hgsc.bcm.edu	37	6	170154032	170154032	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C6orf70	NM_018341	exon2	c.C79T	p.Q27X	.	.	62	4	124	0	.	91
C8orf58	541565	hgsc.bcm.edu;bcgsc.ca	37	8	22458617	22458617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C8orf58	NM_001013842	exon2	c.A263G	p.Q88R	.	.	36	4	93	0	.	91
C9orf84	158401	hgsc.bcm.edu	37	9	114454021	114454021	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	C9orf84	NM_173521	exon25	c.T4044C	p.S1348S	.	.	90	4	118	0	.	92
CACNG5	27091	hgsc.bcm.edu	37	17	64875093	64875093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CACNG5	NM_145811	exon2	c.A200G	p.E67G	.	.	84	4	83	0	.	92
CALB1	793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	91072909	91072909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CALB1	NM_004929	exon10	c.A620C	p.D207A	.	.	137	40	105	0	.	91
CAPG	822	hgsc.bcm.edu	37	2	85628289	85628289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CAPG	NM_001256140	exon5	c.A515G	p.Q172R	.	.	144	6	159	0	.	204
CAPN12	147968	bcgsc.ca	37	19	39228000	39228000	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CAPN12	NM_144691	exon10	c.T1158C	p.R386R	.	.	223	6	239	0	.	91
CAPN1	823	hgsc.bcm.edu	37	11	64977828	64977828	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CAPN1	NM_001198869	exon20	c.T1964C	p.L655P	.	.	108	5	116	0	.	91
CARD6	84674	hgsc.bcm.edu	37	5	40853234	40853234	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CARD6	NM_032587	exon3	c.G1800A	p.L600L	.	.	93	4	193	0	.	230
CASD1	64921	bcgsc.ca	37	7	94167056	94167056	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CASD1	NM_022900	exon9	c.C1116T	p.C372C	.	.	167	6	184	0	.	70
CBX3	11335	bcgsc.ca	37	7	26246118	26246118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CBX3	NM_016587	exon3	c.A155G	p.K52R	.	.	179	6	215	0	.	227
CC2D1A	54862	hgsc.bcm.edu	37	19	14024289	14024289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CC2D1A	NM_017721	exon6	c.G586A	p.A196T	.	.	120	6	139	0	.	90
CCDC141	285025	hgsc.bcm.edu	37	2	179742806	179742806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC141	NM_173648	exon12	c.A1784G	p.D595G	.	.	75	4	95	0	.	78
CCDC25	55246	hgsc.bcm.edu;bcgsc.ca	37	8	27605739	27605739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC25	NM_018246	exon7	c.A406G	p.T136A	.	.	110	5	249	0	.	90
CCDC33	80125	hgsc.bcm.edu	37	15	74573035	74573035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC33	NM_025055	exon9	c.A916G	p.N306D	.	.	87	4	97	0	.	95
CCDC88C	440193	broad.mit.edu;bcgsc.ca	37	14	91739338	91739338	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCDC88C	NM_001080414	exon30	c.C5718A	p.P1906P	.	.	31	4	80	1	.	25
CCHCR1	54535	hgsc.bcm.edu	37	6	31113070	31113070	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CCHCR1	NM_001105564	exon13	c.A1749G	p.L583L	.	.	66	4	69	0	.	91
CD101	9398	bcgsc.ca	37	1	117561003	117561003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD101	NM_001256109	exon6	c.A1838G	p.K613R	.	.	150	5	215	0	.	94
CD22	933	hgsc.bcm.edu	37	19	35835730	35835730	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD22	NM_001185100	exon10	c.2036-2A>G	.	.	.	78	4	82	0	.	526
CD248	57124	mdanderson.org	37	11	66083937	66083937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD248	NM_020404	exon1	c.A562G	p.T188A	.	.	13	3	12	0	.	154
CD55	1604	bcgsc.ca	37	1	207504536	207504536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD55	NM_001114752	exon6	c.A748G	p.T250A	.	.	167	5	189	1	.	187
CD58	965	bcgsc.ca	37	1	117078626	117078626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD58	NM_001144822	exon3	c.A589G	p.T197A	.	.	44	4	58	0	.	90
CD6	923	hgsc.bcm.edu;bcgsc.ca	37	11	60785418	60785418	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD6	NM_006725	exon11	c.A1770G	p.S590S	.	.	58	4	81	0	.	227
CD82	3732	hgsc.bcm.edu	37	11	44639811	44639811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CD82	NM_002231	exon8	c.G538T	p.G180W	.	.	91	4	115	0	.	227
CDC42BPA	8476	hgsc.bcm.edu	37	1	227216408	227216408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC42BPA	NM_003607	exon29	c.G4277A	p.R1426Q	.	.	85	4	166	0	.	549
CDC42EP4	23580	hgsc.bcm.edu	37	17	71281766	71281766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC42EP4	NM_012121	exon2	c.A874G	p.S292G	.	.	78	4	98	0	.	90
CDC5L	988	hgsc.bcm.edu	37	6	44371614	44371614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDC5L	NM_001253	exon6	c.A608G	p.K203R	.	.	99	4	118	0	.	229
CDCP1	64866	hgsc.bcm.edu	37	3	45135024	45135024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP1	NM_022842	exon6	c.A1372G	p.S458G	.	.	78	4	84	0	.	117
CDCP2	200008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	54618517	54618517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDCP2	NM_201546	exon1	c.G79A	p.G27S	.	.	125	26	216	0	.	69
CDH23	64072	hgsc.bcm.edu	37	10	73375297	73375297	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDH23	NM_052836	exon10	c.G869T	p.S290I	.	.	79	4	130	0	.	563
CDH3	1001	bcgsc.ca	37	16	68712466	68712466	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CDH3	NM_001793	exon5	c.C453T	p.D151D	.	.	86	6	152	0	.	950
CELSR1	9620	hgsc.bcm.edu	37	22	46930936	46930936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CELSR1	NM_014246	exon1	c.C2132A	p.A711D	.	.	50	4	98	0	.	525
CEND1	51286	bcgsc.ca	37	11	788538	788538	+	Silent	SNP	G	G	T	rs144365138		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEND1	NM_016564	exon2	c.C39A	p.P13P	.	.	151	7	294	1	A|0.000;C|0.000;G|1.000	90
CEP164	22897	hgsc.bcm.edu	37	11	117214976	117214976	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP164	NM_001271933	exon3	c.T177C	p.P59P	.	.	106	5	134	0	.	69
CEP55	55165	hgsc.bcm.edu	37	10	95279490	95279490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP55	NM_001127182	exon8	c.G1117A	p.V373M	.	.	84	4	93	0	.	90
CEP89	84902	hgsc.bcm.edu	37	19	33370210	33370210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CEP89	NM_032816	exon19	c.A2210G	p.Q737R	.	.	149	6	126	0	.	94
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57754012	57754012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CGNL1	NM_001252335	exon9	c.T2325G	p.D775E	.	.	89	21	136	0	.	100
CHCHD3	54927	bcgsc.ca	37	7	132754968	132754968	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHCHD3	NM_017812	exon2	c.C103A	p.R35R	.	.	178	6	191	0	.	90
CHD1	1105	bcgsc.ca	37	5	98232146	98232146	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD1	NM_001270	exon11	c.A1494G	p.K498K	.	.	96	5	183	0	.	274
CHD1	1105	hgsc.bcm.edu	37	5	98204197	98204197	+	Splice_Site	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD1	NM_001270	exon31	c.4248+2T>A	.	.	.	52	3	90	0	.	274
CHD2	1106	hgsc.bcm.edu;bcgsc.ca	37	15	93522390	93522390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD2	NM_001271	exon22	c.A2753G	p.K918R	.	.	71	4	90	0	.	229
CHD9	80205	bcgsc.ca	37	16	53352252	53352252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHD9	NM_025134	exon37	c.G7665T	p.K2555N	.	.	232	6	426	2	.	272
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	36156116	36156116	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173695	exon9	c.G1087C	p.D363H	.	.	176	10	244	0	.	.
CHIA	27159	hgsc.bcm.edu	37	1	111862847	111862847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHIA	NM_201653	exon12	c.C1190T	p.P397L	.	.	82	4	104	0	.	91
CHIT1	1118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	203186123	203186123	+	Missense_Mutation	SNP	C	C	T	rs202003206		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHIT1	NM_003465	exon11	c.G1295A	p.R432Q	.	.	28	9	42	0	C|0.999;T|0.000	90
CHST12	55501	hgsc.bcm.edu	37	7	2472863	2472863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CHST12	NM_018641	exon2	c.C589A	p.R197S	.	.	94	4	145	0	.	226
CLASP2	23122	hgsc.bcm.edu;bcgsc.ca	37	3	33759302	33759302	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLASP2	NM_015097	exon1	c.C193A	p.R65R	.	.	86	5	113	0	.	93
CLCN5	1184	bcgsc.ca	37	X	49845298	49845298	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLCN5	NM_001127898	exon8	c.T651C	p.A217A	.	.	209	8	281	0	.	132
CLCN5	1184	hgsc.bcm.edu	37	X	49855056	49855056	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLCN5	NM_001127898	exon13	c.A2028G	p.E676E	.	.	96	4	116	0	.	132
CLCNKA	1187	hgsc.bcm.edu	37	1	16351303	16351303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLCNKA	NM_004070	exon4	c.G275T	p.R92L	.	.	124	6	241	0	.	91
CLEC10A	10462	bcgsc.ca	37	17	6979156	6979156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLEC10A	NM_182906	exon7	c.A569G	p.D190G	.	.	50	4	138	0	.	91
CLHC1	130162	hgsc.bcm.edu	37	2	55433452	55433452	+	Silent	SNP	A	A	G	rs151168260		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152385	exon9	c.T960C	p.S320S	.	.	97	4	97	0	A|1.000;G|0.000	.
CLN6	54982	hgsc.bcm.edu	37	15	68504132	68504132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CLN6	NM_017882	exon4	c.G367A	p.G123S	.	.	98	4	136	0	.	91
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66651253	66651253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CMTM4	NM_178818	exon5	c.A632T	p.Y211F	.	.	287	98	405	1	.	227
CNBD1	168975	hgsc.bcm.edu	37	8	88218349	88218349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNBD1	NM_173538	exon5	c.G560T	p.W187L	.	.	98	4	72	0	.	3
CNBD2	140894	bcgsc.ca	37	20	34556699	34556699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_080834	exon1	c.G15T	p.M5I	.	.	61	4	87	0	.	.
CNST	163882	hgsc.bcm.edu	37	1	246810803	246810803	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNST	NM_152609	exon9	c.T1300C	p.L434L	.	.	94	4	121	0	.	90
CNTD2	79935	hgsc.bcm.edu	37	19	40732473	40732473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CNTD2	NM_024877	exon1	c.T76C	p.S26P	.	.	112	7	121	0	.	90
COG6	57511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	40293426	40293426	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COG6	NM_001145079	exon14	c.C1338T	p.L446L	.	.	151	25	230	1	.	227
COL11A1	1301	hgsc.bcm.edu;bcgsc.ca	37	1	103491374	103491374	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL11A1	NM_080629	exon6	c.A915G	p.K305K	.	.	138	5	214	0	.	586
COL28A1	340267	hgsc.bcm.edu	37	7	7572478	7572478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL28A1	NM_001037763	exon2	c.T29C	p.L10P	.	.	81	4	81	0	.	93
COL2A1	1280	hgsc.bcm.edu	37	12	48374364	48374364	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL2A1	NM_001844	exon39	c.G2598A	p.Q866Q	.	.	57	4	70	0	.	92
COL2A1	1280	hgsc.bcm.edu	37	12	48381091	48381091	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL2A1	NM_001844	exon20	c.C1227T	p.N409N	.	.	100	4	172	0	.	92
COL4A1	1282	hgsc.bcm.edu	37	13	110822983	110822983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL4A1	NM_001845	exon42	c.A3653G	p.Q1218R	.	.	50	4	86	0	.	654
COL4A1	1282	hgsc.bcm.edu	37	13	110833649	110833649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL4A1	NM_001845	exon29	c.A2183G	p.Q728R	.	.	85	5	172	0	.	654
COL5A1	1289	hgsc.bcm.edu;bcgsc.ca	37	9	137716488	137716488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL5A1	NM_000093	exon62	c.T4741C	p.S1581P	.	.	96	6	168	0	.	524
COL6A3	1293	hgsc.bcm.edu	37	2	238289710	238289710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL6A3	NM_004369	exon5	c.T1745C	p.I582T	.	.	66	4	84	0	.	526
COL7A1	1294	broad.mit.edu	37	3	48613707	48613707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL7A1	NM_000094	exon70	c.T5795C	p.L1932P	.	.	171	6	197	0	.	160
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	3	48609831	48609831	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COL7A1	NM_000094	exon89	c.A6960G	p.G2320G	.	.	153	7	184	0	.	160
COMP	1311	hgsc.bcm.edu	37	19	18896349	18896349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	COMP	NM_000095	exon15	c.A1676G	p.E559G	.	.	156	7	136	0	.	90
CORIN	10699	hgsc.bcm.edu	37	4	47628491	47628491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CORIN	NM_006587	exon17	c.G2246T	p.R749L	.	.	122	5	156	0	.	91
CPM	1368	hgsc.bcm.edu	37	12	69279594	69279594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPM	NM_001005502	exon3	c.T236C	p.V79A	.	.	98	4	134	0	.	650
CPSF2	53981	hgsc.bcm.edu	37	14	92624221	92624221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPSF2	NM_017437	exon13	c.T1814C	p.I605T	.	.	87	4	99	0	.	92
CPT1A	1374	hgsc.bcm.edu	37	11	68580046	68580046	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CPT1A	NM_001031847	exon4	c.142-2A>T	.	.	.	98	4	126	0	.	149
CRBN	51185	hgsc.bcm.edu	37	3	3221342	3221342	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CRBN	NM_001173482	exon1	c.T30C	p.A10A	.	.	161	8	234	0	.	91
CREB3L4	148327	hgsc.bcm.edu	37	1	153945673	153945673	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CREB3L4	NM_001255978	exon7	c.T746C	p.V249A	.	.	100	4	124	0	.	91
CREBBP	1387	hgsc.bcm.edu	37	16	3778015	3778015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CREBBP	NM_004380	exon31	c.T7033C	p.S2345P	.	.	108	5	223	0	.	1807
CSMD1	64478	hgsc.bcm.edu;bcgsc.ca	37	8	2823315	2823315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CSMD1	NM_033225	exon59	c.A9262G	p.S3088G	.	.	75	4	145	0	.	86
CSMD3	114788	bcgsc.ca	37	8	113301618	113301618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CSMD3	NM_198123	exon57	c.A9124G	p.S3042G	.	.	157	5	94	0	.	1132
CST11	140880	bcgsc.ca	37	20	23433303	23433303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CST11	NM_130794	exon1	c.A146G	p.Q49R	.	.	211	7	224	0	.	90
CTC1	80169	hgsc.bcm.edu	37	17	8131843	8131843	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTC1	NM_025099	exon22	c.A3492G	p.K1164K	.	.	60	5	128	0	.	93
CTC1	80169	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	8133211	8133211	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTC1	NM_025099	exon18	c.C3009A	p.I1003I	.	.	43	4	97	0	.	93
CTNNA2	1496	hgsc.bcm.edu	37	2	80101205	80101205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CTNNA2	NM_001164883	exon6	c.C589A	p.L197M	.	.	72	4	60	0	.	368
CUBN	8029	hgsc.bcm.edu	37	10	17157511	17157511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUBN	NM_001081	exon7	c.C679A	p.H227N	.	.	92	4	91	0	.	166
CUL1	8454	hgsc.bcm.edu;bcgsc.ca	37	7	148451110	148451110	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUL1	NM_003592	exon3	c.A183G	p.Q61Q	.	.	93	5	100	0	.	226
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101840082	101840082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CUX1	NM_001202543	exon15	c.C1424A	p.S475Y	.	.	138	44	174	0	.	160
CX3CL1	6376	hgsc.bcm.edu	37	16	57416825	57416825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CX3CL1	NM_002996	exon3	c.A1075G	p.M359V	.	.	44	4	93	0	.	226
CYP46A1	10858	hgsc.bcm.edu	37	14	100192567	100192567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	CYP46A1	NM_006668	exon14	c.T1306C	p.S436P	.	.	74	4	125	0	.	90
DAB2	1601	hgsc.bcm.edu	37	5	39390554	39390554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DAB2	NM_001343	exon5	c.G454T	p.G152W	.	.	58	4	91	0	.	227
DBNL	28988	hgsc.bcm.edu	37	7	44098959	44098959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DBNL	NM_001122956	exon10	c.T869C	p.L290P	.	.	58	4	86	0	.	91
DBT	1629	hgsc.bcm.edu	37	1	100672056	100672056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DBT	NM_001918	exon9	c.A1154G	p.Q385R	.	.	92	4	140	0	.	91
DCP1B	196513	hgsc.bcm.edu	37	12	2062133	2062133	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCP1B	NM_152640	exon7	c.G973T	p.G325X	.	.	94	4	98	0	.	91
DCST2	127579	hgsc.bcm.edu	37	1	155005955	155005955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCST2	NM_144622	exon1	c.C223A	p.Q75K	.	.	88	5	173	0	.	92
DCT	1638	hgsc.bcm.edu	37	13	95131305	95131305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCT	NM_001129889	exon1	c.A205G	p.R69G	.	.	97	4	147	0	.	94
DCTN1	1639	hgsc.bcm.edu;bcgsc.ca	37	2	74590545	74590545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCTN1	NM_004082	exon28	c.C3221T	p.P1074L	.	.	50	4	64	0	.	95
DCUN1D3	123879	bcgsc.ca	37	16	20871573	20871573	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCUN1D3	NM_173475	exon3	c.C550A	p.R184R	.	.	73	4	121	1	.	92
DCUN1D5	84259	bcgsc.ca	37	11	102954038	102954038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DCUN1D5	NM_032299	exon3	c.G196T	p.G66W	.	.	209	7	295	0	.	90
DDX21	9188	hgsc.bcm.edu	37	10	70723119	70723119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX21	NM_004728	exon4	c.T680C	p.I227T	.	.	100	4	95	0	.	228
DDX25	29118	bcgsc.ca	37	11	125788608	125788608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX25	NM_013264	exon10	c.A1124G	p.E375G	.	.	319	14	426	1	.	227
DDX25	29118	bcgsc.ca	37	11	125788611	125788611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX25	NM_013264	exon10	c.A1127C	p.Q376P	.	.	322	15	435	1	.	227
DDX27	55661	bcgsc.ca	37	20	47852768	47852768	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX27	NM_017895	exon13	c.G1602T	p.T534T	.	.	169	6	167	0	.	537
DDX49	54555	hgsc.bcm.edu	37	19	19035101	19035101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX49	NM_019070	exon7	c.A836G	p.H279R	.	.	145	6	188	0	.	227
DDX54	79039	hgsc.bcm.edu	37	12	113607596	113607596	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DDX54	NM_024072	exon12	c.C1393A	p.R465R	.	.	81	4	123	0	.	227
DENND1C	79958	hgsc.bcm.edu	37	19	6470311	6470311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND1C	NM_024898	exon18	c.C1357A	p.R453S	.	.	123	5	143	0	.	67
DENND4B	9909	hgsc.bcm.edu	37	1	153903522	153903522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND4B	NM_014856	exon25	c.A4015G	p.T1339A	.	.	70	4	110	0	.	69
DENND4C	55667	hgsc.bcm.edu	37	9	19346681	19346681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DENND4C	NM_017925	exon22	c.A3767G	p.H1256R	.	.	103	5	146	0	.	92
DET1	55070	hgsc.bcm.edu	37	15	89056197	89056197	+	Silent	SNP	T	T	C	rs199619310		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DET1	NM_017996	exon6	c.A1671G	p.R557R	.	.	97	4	131	0	T|0.999;C|0.000	227
DGKD	8527	hgsc.bcm.edu	37	2	234363511	234363511	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DGKD,NS,NS,+2	DGKD	NM_152879	exon19	c.G2367T	p.E789D	.	.	73	3	90	0	.	676
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24507078	24507078	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001082488	exon2	c.C255T	p.G85G	.	.	306	129	415	0	.	.
DHX33	56919	hgsc.bcm.edu	37	17	5365718	5365718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DHX33	NM_020162	exon3	c.C599A	p.T200N	.	.	69	4	138	0	.	228
DIDO1	11083	hgsc.bcm.edu	37	20	61511261	61511261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIDO1	NM_001193369	exon16	c.C6047A	p.P2016Q	.	.	74	4	72	0	.	96
DIP2A	23181	hgsc.bcm.edu	37	21	47983806	47983806	+	Silent	SNP	C	C	A	rs201790767	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIP2A	NM_015151	exon35	c.C4125A	p.T1375T	.	.	85	4	105	0	C|0.996;G|0.004	24
DIP2B	57609	hgsc.bcm.edu	37	12	51069149	51069149	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DIP2B	NM_173602	exon7	c.G834T	p.Q278H	.	.	102	5	164	0	.	95
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38080908	38080908	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DLEC1	NM_007337	exon1	c.C192T	p.R64R	.	.	138	46	176	0	.	161
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	32328324	32328324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMD	NM_004006	exon42	c.T5992C	p.S1998P	.	.	140	6	223	0	.	265
DMPK	1760	hgsc.bcm.edu	37	19	46280628	46280628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DMPK	NM_001081563	exon7	c.A1133G	p.D378G	.	.	87	4	101	0	.	546
DMXL1	1657	hgsc.bcm.edu	37	5	118576151	118576151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	DMXL1,NS,carcinoma,-2	DMXL1	NM_005509	exon41	c.A8626G	p.N2876D	.	.	40	2	101	0	.	92
DNAH3	55567	hgsc.bcm.edu	37	16	20975318	20975318	+	Silent	SNP	T	T	C	rs150973698	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNAH3	NM_017539	exon53	c.A9888G	p.P3296P	.	.	85	4	135	0	T|0.999;C|0.001	167
DNAJC6	9829	hgsc.bcm.edu;bcgsc.ca	37	1	65867511	65867511	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNAJC6	NM_001256864	exon15	c.C2175A	p.T725T	.	.	73	4	110	0	.	272
DNASE1L1	1774	hgsc.bcm.edu	37	X	153631431	153631431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNASE1L1	NM_006730	exon7	c.T626C	p.V209A	.	.	84	5	73	0	.	554
DNHD1	144132	hgsc.bcm.edu	37	11	6561171	6561171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNHD1	NM_144666	exon18	c.G3486T	p.W1162C	.	.	87	4	122	0	.	24
DNM1L	10059	hgsc.bcm.edu	37	12	32890048	32890048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNM1L	NM_012062	exon14	c.A1549G	p.R517G	.	.	78	4	127	0	.	92
DNM3	26052	hgsc.bcm.edu	37	1	171958288	171958288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNM3	NM_001136127	exon4	c.G589T	p.G197C	.	.	76	4	131	0	.	90
DNPEP	23549	hgsc.bcm.edu	37	2	220251502	220251502	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DNPEP	NM_012100	exon5	c.220-2A>G	.	.	.	63	4	68	0	.	90
DOCK7	85440	hgsc.bcm.edu	37	1	63099217	63099217	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK7	NM_001271999	exon10	c.A1068G	p.G356G	.	.	95	4	161	0	.	92
DOCK9	23348	hgsc.bcm.edu;bcgsc.ca	37	13	99519792	99519792	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DOCK9	NM_015296	exon31	c.3178-2A>G	.	.	.	38	4	45	0	.	90
DPF2	5977	hgsc.bcm.edu;bcgsc.ca	37	11	65113180	65113180	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPF2	NM_006268	exon7	c.C681G	p.H227Q	.	.	57	4	79	0	.	91
DPYD	1806	hgsc.bcm.edu	37	1	97770913	97770913	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPYD	NM_000110	exon18	c.C2201A	p.A734D	.	.	97	5	156	0	.	278
DPYSL5	56896	hgsc.bcm.edu	37	2	27147810	27147810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DPYSL5	NM_001253724	exon3	c.A317G	p.E106G	.	.	81	4	101	0	.	92
DQX1	165545	bcgsc.ca	37	2	74746737	74746737	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DQX1	NM_133637	exon10	c.T1752C	p.S584S	.	.	182	6	224	0	.	92
DSEL	92126	hgsc.bcm.edu;bcgsc.ca	37	18	65178261	65178261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DSEL	NM_032160	exon2	c.A3615G	p.E1205E	.	.	120	6	242	0	.	157
DSG1	1828	bcgsc.ca	37	18	28926001	28926001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DSG1	NM_001942	exon14	c.G1940A	p.G647E	.	.	132	5	219	1	.	519
DUSP6	1848	hgsc.bcm.edu	37	12	89744396	89744396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DUSP6	NM_001946	exon2	c.C807A	p.S269S	.	.	68	4	105	0	.	846
DYNC1H1	1778	hgsc.bcm.edu	37	14	102452814	102452814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC1H1	NM_001376	exon8	c.G2252T	p.R751L	.	.	92	4	93	0	.	98
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103058312	103058312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC2H1	NM_001377	exon43	c.A7137G	p.Q2379Q	.	.	88	4	106	0	.	68
DYNC2LI1	51626	bcgsc.ca	37	2	44023893	44023893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYNC2LI1	NM_001193464	exon8	c.A616G	p.T206A	.	.	159	6	165	0	.	91
DYSF	8291	hgsc.bcm.edu	37	2	71892352	71892352	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	DYSF	NM_001130987	exon47	c.C5235T	p.C1745C	.	.	57	4	83	0	.	158
EDARADD	128178	hgsc.bcm.edu;bcgsc.ca	37	1	236645629	236645629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDARADD	NM_145861	exon6	c.C328T	p.P110S	.	.	73	4	143	0	.	90
EDDM3A	10876	bcgsc.ca	37	14	21215746	21215746	+	Missense_Mutation	SNP	T	T	C	rs140958213	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDDM3A	NM_006683	exon2	c.T7C	p.S3P	.	.	132	5	149	0	T|1.000;A|0.000	90
EDDM3B	64184	hgsc.bcm.edu	37	14	21238598	21238598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EDDM3B	NM_022360	exon2	c.C289A	p.Q97K	.	.	95	4	109	0	.	91
EEF1A1	1915	broad.mit.edu	37	6	74229722	74229722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EEF1A1	NM_001402	exon2	c.A28T	p.I10F	.	.	6	3	19	0	.	226
EFHC1	114327	hgsc.bcm.edu	37	6	52329890	52329890	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFHC1	NM_018100	exon6	c.C1114A	p.R372R	.	.	99	4	121	0	.	93
EFNA5	1946	hgsc.bcm.edu;bcgsc.ca	37	5	106723416	106723416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EFNA5	NM_001962	exon3	c.A475G	p.R159G	.	.	66	4	168	0	.	90
EIF2AK1	27102	hgsc.bcm.edu	37	7	6078226	6078226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EIF2AK1	NM_014413	exon10	c.A1196G	p.N399S	.	.	86	4	83	0	.	408
ELAVL4	1996	hgsc.bcm.edu	37	1	50610679	50610679	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELAVL4	NM_001144775	exon2	c.A111G	p.T37T	.	.	79	5	132	0	.	516
ELOVL3	83401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103988767	103988767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ELOVL3	NM_152310	exon4	c.A571T	p.N191Y	.	.	122	5	149	0	.	92
ELP6	54859	hgsc.bcm.edu	37	3	47552681	47552681	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001031703	exon2	c.T90C	p.D30D	.	.	98	4	96	0	.	.
EPHA3	2042	hgsc.bcm.edu;bcgsc.ca	37	3	89390186	89390186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHA3	NM_005233	exon4	c.G935T	p.R312L	.	.	94	4	74	0	.	1500
EPHA7	2045	hgsc.bcm.edu	37	6	93967190	93967190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHA7	NM_004440	exon12	c.C2162T	p.A721V	.	.	100	4	173	0	.	1453
EPHB3	2049	hgsc.bcm.edu	37	3	184290572	184290572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHB3	NM_004443	exon3	c.T464C	p.V155A	.	.	60	4	91	0	.	1455
EPHX4	253152	hgsc.bcm.edu	37	1	92528663	92528663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G909T	p.W303C	.	.	94	4	207	0	.	90
EPHX4	253152	hgsc.bcm.edu;bcgsc.ca	37	1	92528734	92528734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPHX4	NM_173567	exon7	c.G980T	p.R327M	.	.	80	4	93	0	.	90
EPRS	2058	hgsc.bcm.edu	37	1	220203778	220203778	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPRS	NM_004446	exon6	c.A573G	p.P191P	.	.	62	4	92	0	.	92
EPS8L3	79574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	110294654	110294654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPS8L3	NM_139053	exon15	c.C1400T	p.P467L	.	.	186	75	236	0	.	93
EPX	8288	hgsc.bcm.edu;bcgsc.ca	37	17	56280606	56280606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EPX	NM_000502	exon11	c.C1873T	p.P625S	.	.	84	5	120	0	.	92
ERBB3	2065	hgsc.bcm.edu;bcgsc.ca	37	12	56493513	56493513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERBB3	NM_001982	exon24	c.G2921T	p.R974L	.	.	91	4	164	0	.	1403
ERLIN1	10613	hgsc.bcm.edu	37	10	101937926	101937926	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_006459	exon4	c.C268A	p.R90R	.	.	72	4	62	0	.	.
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23707249	23707249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERN2	NM_033266	exon14	c.C1720T	p.L574L	.	.	75	22	96	0	.	322
ERO1LB	56605	bcgsc.ca	37	1	236384243	236384243	+	Missense_Mutation	SNP	A	A	G	rs146544268	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ERO1LB	NM_019891	exon15	c.T1232C	p.L411P	.	.	162	6	184	0	A|0.999;T|0.001	90
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152382169	152382169	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ESR1	NM_000125	exon6	c.A1279G	p.M427V	.	.	74	4	147	0	.	1042
ESR2	2100	bcgsc.ca	37	14	64727249	64727249	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ESR2	NM_001214902	exon4	c.C870A	p.T290T	.	.	195	7	265	0	.	611
ETHE1	23474	hgsc.bcm.edu	37	19	44012185	44012185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ETHE1	NM_014297	exon6	c.A623G	p.E208G	.	.	79	4	85	0	.	90
EXD2	55218	hgsc.bcm.edu	37	14	69704317	69704317	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001193361	exon8	c.C1318A	p.R440R	.	.	99	4	92	0	.	.
EXOC7	23265	bcgsc.ca	37	17	74081795	74081795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EXOC7	NM_001145297	exon15	c.C1732T	p.H578Y	.	.	116	5	138	1	.	90
EYS	346007	bcgsc.ca	37	6	66045008	66045008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	EYS	NM_001142801	exon11	c.A1631G	p.E544G	.	.	147	5	206	0	.	660
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	169512354	169512354	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	F5	NM_000130	exon14	c.1976-2A>G	.	.	.	73	23	103	0	.	157
FAM124A	220108	hgsc.bcm.edu	37	13	51855022	51855022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM124A	NM_145019	exon5	c.A1379G	p.D460G	.	.	68	4	77	0	.	90
FAM13A	10144	bcgsc.ca	37	4	89708959	89708959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM13A	NM_014883	exon10	c.A1216G	p.R406G	.	.	51	4	77	0	.	70
FAM178B	51252	hgsc.bcm.edu	37	2	97586981	97586981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM178B	NM_001122646	exon12	c.A1483G	p.T495A	.	.	59	4	94	0	.	90
FAM35BP	414241	bcgsc.ca	37	10	46918233	46918233	+	RNA	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	112	27	121	0	.	.
FAM83H	286077	hgsc.bcm.edu	37	8	144812417	144812417	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAM83H	NM_198488	exon2	c.T336C	p.P112P	.	.	72	4	84	0	.	92
FANCD2	2177	bcgsc.ca	37	3	10123051	10123051	+	Missense_Mutation	SNP	G	G	T	rs142238966	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FANCD2	NM_001018115	exon32	c.G3127T	p.G1043C	.	.	225	6	265	0	G|1.000;A|0.000	229
FANCM	57697	hgsc.bcm.edu	37	14	45644488	45644488	+	Missense_Mutation	SNP	A	A	G	rs113630826		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FANCM	NM_020937	exon14	c.A2531G	p.H844R	.	.	97	4	113	0	A|0.500;G|0.500	569
FASTK	10922	hgsc.bcm.edu;bcgsc.ca	37	7	150774997	150774997	+	Silent	SNP	A	A	G	rs189454687		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FASTK	NM_006712	exon5	c.T1008C	p.V336V	.	.	116	5	223	0	A|0.999;G|0.000	359
FAT2	2196	hgsc.bcm.edu	37	5	150905386	150905386	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAT2	NM_001447	exon17	c.G10449T	p.L3483L	.	.	64	4	87	0	.	96
FAT2	2196	hgsc.bcm.edu	37	5	150908752	150908752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FAT2	NM_001447	exon14	c.A10013G	p.D3338G	.	.	90	4	134	0	.	96
FATE1	89885	hgsc.bcm.edu	37	X	150889973	150889973	+	Missense_Mutation	SNP	G	G	T	rs149441058	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FATE1	NM_033085	exon3	c.G341T	p.R114L	.	.	90	4	66	0	G|1.000;A|0.000	131
FBF1	85302	hgsc.bcm.edu	37	17	73914288	73914288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBF1	NM_001080542	exon20	c.A2156G	p.K719R	.	.	98	4	101	0	.	205
FBLN7	129804	hgsc.bcm.edu	37	2	112933383	112933383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBLN7	NM_153214	exon4	c.A499G	p.T167A	.	.	72	4	91	0	.	69
FBN1	2200	hgsc.bcm.edu	37	15	48756205	48756205	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBN1	NM_000138	exon41	c.T4956A	p.C1652X	.	.	98	4	103	0	.	92
FBN3	84467	hgsc.bcm.edu	37	19	8161405	8161405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBN3	NM_032447	exon43	c.G5462A	p.C1821Y	.	.	88	4	77	0	.	100
FBN3	84467	hgsc.bcm.edu	37	19	8203200	8203200	+	Silent	SNP	G	G	A	rs146076390		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBN3	NM_032447	exon9	c.C1026T	p.F342F	.	.	117	5	137	0	G|1.000;A|0.000	100
FBP2	8789	hgsc.bcm.edu	37	9	97346891	97346891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBP2	NM_003837	exon3	c.T394C	p.S132P	.	.	115	5	151	0	.	226
FBXL14	144699	hgsc.bcm.edu	37	12	1702401	1702401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXL14	NM_152441	exon1	c.A832G	p.S278G	.	.	60	4	72	0	.	227
FBXO11	80204	hgsc.bcm.edu	37	2	48132835	48132835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO11	NM_001190274	exon1	c.C25T	p.R9W	.	.	86	4	111	0	.	659
FBXO3	26273	hgsc.bcm.edu	37	11	33763518	33763518	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO3	NM_012175	exon11	c.A1352G	p.E451G	.	.	78	4	113	0	.	227
FBXO45	200933	hgsc.bcm.edu;bcgsc.ca	37	3	196304623	196304623	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FBXO45	NM_001105573	exon2	c.A618T	p.L206L	.	.	49	4	94	0	.	614
FCGBP	8857	hgsc.bcm.edu	37	19	40433822	40433822	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FCGBP	NM_003890	exon2	c.C447T	p.P149P	.	.	60	4	82	0	.	98
FEM1A	55527	hgsc.bcm.edu;bcgsc.ca	37	19	4792908	4792908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FEM1A	NM_018708	exon1	c.T1042C	p.Y348H	.	.	72	5	81	0	.	90
FEZ2	9637	bcgsc.ca	37	2	36808537	36808537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FEZ2	NM_001042548	exon4	c.C530A	p.P177Q	.	.	290	8	335	0	.	23
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	1	60019838	60019838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FGGY	NM_001113411	exon8	c.A842G	p.E281G	.	.	93	5	153	0	.	69
FGL2	10875	hgsc.bcm.edu;bcgsc.ca	37	7	76829024	76829024	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	FGL2,nipple,malignant_melanoma,-2	FGL2	NM_006682	exon1	c.A87G	p.E29E	.	.	78	4	79	0	.	92
FIBP	9158	hgsc.bcm.edu	37	11	65652450	65652450	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FIBP	NM_198897	exon7	c.C796A	p.R266R	.	.	89	4	132	0	.	91
FIG4	9896	bcgsc.ca	37	6	110083342	110083342	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FIG4	NM_014845	exon12	c.G1320T	p.V440V	.	.	93	6	121	1	.	69
FKBP9	11328	hgsc.bcm.edu	37	7	33028263	33028263	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FKBP9	NM_007270	exon6	c.A1038G	p.R346R	.	.	70	4	106	0	.	651
FKTN	2218	hgsc.bcm.edu	37	9	108363469	108363469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FKTN	NM_006731	exon4	c.T209C	p.V70A	.	.	91	5	108	0	.	155
FLNC	2318	hgsc.bcm.edu	37	7	128494663	128494663	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FLNC	NM_001458	exon41	c.G6924A	p.P2308P	.	.	107	5	160	0	.	141
FMN2	56776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240370660	240370660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FMN2	NM_020066	exon5	c.A2548G	p.K850E	.	.	116	54	147	0	.	145
FNBP4	23360	hgsc.bcm.edu	37	11	47755663	47755663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FNBP4	NM_015308	exon10	c.G1600A	p.A534T	.	.	74	4	73	0	.	91
FOXO1	2308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41239792	41239792	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXO1	NM_002015	exon1	c.C558T	p.I186I	.	.	182	65	333	1	.	1295
FOXP1	27086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	71096149	71096149	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXP1	NM_001244815	exon5	c.G614A	p.G205D	.	.	158	19	235	2	.	415
FOXRED1	55572	hgsc.bcm.edu	37	11	126146997	126146997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FOXRED1	NM_017547	exon10	c.T1133C	p.V378A	.	.	108	5	189	0	.	90
FRAS1	80144	bcgsc.ca	37	4	79399047	79399047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FRAS1	NM_025074	exon55	c.A7930G	p.S2644G	.	.	180	6	238	0	.	68
FRAS1	80144	hgsc.bcm.edu	37	4	79418004	79418004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FRAS1	NM_025074	exon60	c.C9004T	p.P3002S	.	.	91	4	120	0	.	68
FTSJD1	55783	hgsc.bcm.edu	37	16	71319522	71319522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FTSJD1	NM_018348	exon3	c.A302G	p.H101R	.	.	79	6	131	0	.	91
FURIN	5045	hgsc.bcm.edu	37	15	91420416	91420416	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FURIN	NM_002569	exon6	c.C553A	p.R185R	.	.	82	4	133	0	.	1083
FUT10	84750	hgsc.bcm.edu	37	8	33230192	33230192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FUT10	NM_032664	exon5	c.A1343G	p.E448G	.	.	94	4	174	0	.	92
FXR1	8087	bcgsc.ca	37	3	180669246	180669246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FXR1	NM_001013438	exon8	c.T791C	p.I264T	.	.	126	5	126	0	.	153
FZD3	7976	hgsc.bcm.edu;bcgsc.ca	37	8	28385289	28385289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	FZD3	NM_017412	exon5	c.A1012G	p.I338V	.	.	59	4	133	0	.	659
GABRB1	2560	hgsc.bcm.edu	37	4	47427703	47427703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GABRB1	NM_000812	exon9	c.G1093T	p.G365C	.	.	96	4	85	0	.	92
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810239	65810239	+	Silent	SNP	G	G	A	rs78578425		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GAL3ST3	NM_033036	exon3	c.C1035T	p.A345A	.	.	6	4	0	0	G|0.867;A|0.133	91
GANAB	23193	bcgsc.ca	37	11	62401842	62401842	+	Missense_Mutation	SNP	G	G	A	rs182247032		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GANAB	NM_198335	exon6	c.C566T	p.S189L	.	.	63	4	99	0	G|0.999;A|0.001	94
GATM	2628	hgsc.bcm.edu	37	15	45658625	45658625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GATM	NM_001482	exon5	c.T757C	p.F253L	.	.	86	4	103	0	.	90
GATM	2628	hgsc.bcm.edu	37	15	45658705	45658705	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GATM	NM_001482	exon5	c.A677G	p.D226G	.	.	68	4	70	0	.	90
GBGT1	26301	hgsc.bcm.edu	37	9	136029497	136029497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GBGT1	NM_021996	exon7	c.C511A	p.Q171K	.	.	81	4	90	0	.	90
GBP6	163351	bcgsc.ca	37	1	89843752	89843752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GBP6	NM_198460	exon4	c.C409A	p.Q137K	.	.	89	4	129	1	.	92
GCFC2	6936	bcgsc.ca	37	2	75914962	75914962	+	Silent	SNP	G	G	T	rs140271309	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_003203	exon11	c.C1681A	p.R561R	.	.	257	7	329	0	G|1.000;A|0.000	.
GCN1L1	10985	bcgsc.ca	37	12	120621949	120621949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GCN1L1	NM_006836	exon4	c.T283C	p.S95P	.	.	183	6	257	0	.	94
GET4	51608	bcgsc.ca	37	7	933566	933566	+	Missense_Mutation	SNP	G	G	T	rs200545709	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GET4	NM_015949	exon8	c.G853T	p.G285C	.	.	75	5	117	0	G|0.999;A|0.001	90
GFOD1	54438	hgsc.bcm.edu	37	6	13470694	13470694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFOD1	NM_001242629	exon2	c.A422G	p.K141R	.	.	98	4	147	0	.	92
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55223877	55223877	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GFRAL	NM_207410	exon6	c.A893C	p.Q298P	.	.	120	63	134	0	.	154
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	23967085	23967085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GGTLC1	NM_178311	exon2	c.C164T	p.T55I	.	.	54	22	53	0	.	23
GIMAP1	170575	hgsc.bcm.edu	37	7	150417814	150417814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GIMAP1	NM_130759	exon3	c.G722A	p.R241Q	.	.	57	6	65	0	.	154
GIPC3	126326	hgsc.bcm.edu	37	19	3586866	3586866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GIPC3	NM_133261	exon3	c.A466G	p.S156G	.	.	113	5	172	0	.	135
GJA10	84694	hgsc.bcm.edu	37	6	90605295	90605295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GJA10	NM_032602	exon1	c.G1108T	p.G370C	.	.	71	4	88	0	.	90
GK2	2712	broad.mit.edu	37	4	80328081	80328081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GK2	NM_033214	exon1	c.A1274G	p.D425G	.	.	298	7	387	0	.	94
GK5	256356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141884509	141884509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GK5	NM_001039547	exon16	c.G1545T	p.W515C	.	.	514	246	651	1	.	90
GLB1L2	89944	hgsc.bcm.edu	37	11	134238603	134238603	+	Nonsense_Mutation	SNP	G	G	T	rs138130138	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GLB1L2	NM_138342	exon10	c.G955T	p.G319X	.	.	52	4	76	0	G|0.997;A|0.003	25
GLCE	26035	hgsc.bcm.edu	37	15	69561466	69561466	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GLCE	NM_015554	exon5	c.T1737C	p.H579H	.	.	88	4	100	0	.	92
GLIPR1L1	256710	bcgsc.ca	37	12	75737636	75737636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GLIPR1L1	NM_152779	exon2	c.C338T	p.A113V	.	.	194	7	259	1	.	90
GLMN	11146	hgsc.bcm.edu	37	1	92713534	92713534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GLMN	NM_053274	exon17	c.A1486G	p.T496A	.	.	86	4	158	0	.	227
GLTSCR1L	23506	hgsc.bcm.edu;bcgsc.ca	37	6	42819934	42819934	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_015349	exon6	c.A1944G	p.P648P	.	.	123	5	115	0	.	.
GMPR2	51292	hgsc.bcm.edu	37	14	24702442	24702442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GMPR2	NM_016576	exon1	c.A37G	p.T13A	.	.	105	5	132	0	.	93
GNAL	2774	hgsc.bcm.edu;bcgsc.ca	37	18	11881066	11881066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAL	NM_182978	exon12	c.C1309A	p.R437S	.	.	62	5	114	0	.	228
GNAS	2778	hgsc.bcm.edu	37	20	57428565	57428565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNAS	NM_080425	exon1	c.A245G	p.N82S	.	.	81	5	91	0	.	4767
GNB2	2783	hgsc.bcm.edu	37	7	100275432	100275432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNB2	NM_005273	exon7	c.A488G	p.D163G	.	.	93	4	105	0	.	229
GNL2	29889	hgsc.bcm.edu;bcgsc.ca	37	1	38048471	38048471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GNL2	NM_013285	exon7	c.C703A	p.P235T	.	.	85	5	122	0	.	91
GOLGB1	2804	broad.mit.edu	37	3	121413573	121413573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOLGB1	NM_001256486	exon13	c.A5797G	p.N1933D	.	.	312	6	313	0	.	161
GOLIM4	27333	broad.mit.edu	37	3	167742334	167742334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOLIM4	NM_014498	exon14	c.C1840A	p.Q614K	.	.	353	8	488	2	.	291
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45006918	45006918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOSR2	NM_001012511	exon2	c.G62A	p.R21H	.	.	49	23	70	0	.	92
GOT2	2806	hgsc.bcm.edu	37	16	58743423	58743423	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GOT2	NM_002080	exon9	c.T1068C	p.T356T	.	.	34	3	58	0	.	91
GP5	2814	bcgsc.ca	37	3	194117687	194117687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GP5	NM_004488	exon2	c.T1325C	p.L442P	.	.	14	4	35	0	.	155
GP6	51206	bcgsc.ca	37	19	55539217	55539217	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GP6	NM_016363	exon4	c.A339G	p.K113K	.	.	150	6	166	1	.	92
GPATCH3	63906	hgsc.bcm.edu	37	1	27219162	27219162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon5	c.A1232G	p.K411R	.	.	94	4	163	0	.	90
GPATCH3	63906	hgsc.bcm.edu;bcgsc.ca	37	1	27226824	27226824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPATCH3	NM_022078	exon1	c.G110T	p.R37L	.	.	46	4	129	0	.	90
GPBAR1	151306	hgsc.bcm.edu	37	2	219127947	219127947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPBAR1	NM_170699	exon2	c.A500T	p.Y167F	.	.	81	5	110	0	.	23
GPD1L	23171	bcgsc.ca	37	3	32200497	32200497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPD1L	NM_015141	exon6	c.T748C	p.S250P	.	.	119	5	139	1	.	90
GPR119	139760	hgsc.bcm.edu	37	X	129519158	129519158	+	Silent	SNP	G	G	T	rs200469524	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR119	NM_178471	exon1	c.C264A	p.S88S	.	.	90	5	80	0	.	132
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	89971070	89971070	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPR98	NM_032119	exon24	c.G5121A	p.Q1707Q	.	.	53	41	84	0	.	103
GPX8	493869	hgsc.bcm.edu	37	5	54456944	54456944	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GPX8	NM_001008397	exon2	c.T327C	p.N109N	.	.	77	4	143	0	.	68
GRAMD3	65983	hgsc.bcm.edu	37	5	125813387	125813387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GRAMD3	NM_001146319	exon6	c.T535C	p.S179P	.	.	130	6	213	0	.	90
GREB1	9687	hgsc.bcm.edu	37	2	11778934	11778934	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GREB1	NM_014668	exon32	c.A5685G	p.K1895K	.	.	141	6	178	0	.	91
GRID1	2894	hgsc.bcm.edu	37	10	87628897	87628897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GRID1	NM_017551	exon6	c.C821A	p.A274D	.	.	107	5	146	0	.	142
GRIN2C	2905	mdanderson.org	37	17	72839259	72839259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GRIN2C	NM_000835	exon13	c.T3017C	p.V1006A	.	.	16	3	22	0	.	228
GSDMB	55876	hgsc.bcm.edu;bcgsc.ca	37	17	38068744	38068746	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSDMB	NM_001042471	exon3	c.240_242del	p.80_81del	.	.	218	104	219	0	.	153
GSK3B	2932	hgsc.bcm.edu	37	3	119642320	119642320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GSK3B	NM_002093	exon4	c.T377C	p.V126A	.	.	70	4	95	0	.	978
GTF2B	2959	bcgsc.ca	37	1	89325640	89325640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF2B	NM_001514	exon5	c.A460G	p.R154G	.	.	222	6	357	2	.	154
GTF2B	2959	bcgsc.ca	37	1	89352980	89352980	+	Missense_Mutation	SNP	C	C	A	rs202186098	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF2B	NM_001514	exon2	c.G88T	p.G30C	.	.	95	5	161	0	C|0.999;T|0.001	154
GTF3C1	2975	hgsc.bcm.edu;bcgsc.ca	37	16	27499733	27499733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	GTF3C1	NM_001520	exon23	c.A3515G	p.N1172S	.	.	60	4	105	0	.	94
HACE1	57531	hgsc.bcm.edu;bcgsc.ca	37	6	105259252	105259252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HACE1	NM_020771	exon7	c.T551C	p.L184P	.	.	67	4	117	0	.	663
HADHB	3032	hgsc.bcm.edu	37	2	26502146	26502146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HADHB	NM_000183	exon9	c.A774G	p.E258E	.	.	83	4	131	0	.	154
HBS1L	10767	hgsc.bcm.edu	37	6	135358603	135358603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HBS1L	NM_001145207	exon5	c.A992G	p.E331G	.	.	122	5	214	0	.	92
HDAC4	9759	bcgsc.ca	37	2	240098157	240098157	+	Silent	SNP	G	G	T	rs140596122	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDAC4	NM_006037	exon5	c.C442A	p.R148R	.	.	224	7	301	0	G|1.000;A|0.000	291
HDAC6	10013	hgsc.bcm.edu	37	X	48661183	48661183	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDAC6	NM_006044	exon2	c.T84C	p.S28S	.	.	110	5	168	0	.	230
HDGFRP3	0	hgsc.bcm.edu	37	15	83832817	83832817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDGFRP3	NM_016073	exon2	c.T95C	p.L32P	.	.	107	5	109	0	.	90
HDLBP	3069	hgsc.bcm.edu;bcgsc.ca	37	2	242186199	242186199	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HDLBP	NM_005336	exon16	c.C1918A	p.R640R	.	.	122	5	121	0	.	290
HEATR4	399671	bcgsc.ca	37	14	73989682	73989682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR4	NM_203309	exon2	c.C175A	p.R59S	.	.	52	4	77	0	.	91
HEATR5A	25938	bcgsc.ca	37	14	31774325	31774325	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5A	NM_015473	exon32	c.C5025A	p.T1675T	.	.	106	5	137	0	.	23
HEATR5A	25938	hgsc.bcm.edu;bcgsc.ca	37	14	31819853	31819853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5A	NM_015473	exon17	c.T2482C	p.L828L	.	.	61	4	69	0	.	23
HEATR5B	54497	bcgsc.ca	37	2	37297520	37297520	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEATR5B	NM_019024	exon7	c.G780A	p.Q260Q	.	.	103	4	114	0	.	142
HECA	51696	hgsc.bcm.edu	37	6	139487731	139487731	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HECA	NM_016217	exon2	c.G582T	p.V194V	.	.	65	4	162	0	.	90
HEPACAM2	253012	hgsc.bcm.edu	37	7	92825188	92825188	+	Nonsense_Mutation	SNP	C	C	A	rs145244580	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HEPACAM2	NM_001039372	exon8	c.G1228T	p.G410X	.	.	79	4	70	0	C|0.998;T|0.002	157
HERC1	8925	hgsc.bcm.edu	37	15	63920929	63920929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon70	c.G13052A	p.G4351D	.	.	130	6	157	0	.	666
HERC1	8925	hgsc.bcm.edu;bcgsc.ca	37	15	63915040	63915040	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HERC1	NM_003922	exon74	c.C13662A	p.T4554T	.	.	71	4	77	0	.	666
HIBADH	11112	hgsc.bcm.edu;bcgsc.ca	37	7	27672052	27672052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIBADH	NM_152740	exon3	c.C265A	p.P89T	.	.	76	4	86	0	.	92
HIP1	3092	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	75186064	75186064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIP1	NM_005338	exon17	c.A1633G	p.S545G	.	.	43	4	70	0	.	1085
HIVEP1	3096	hgsc.bcm.edu	37	6	12161737	12161737	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HIVEP1	NM_002114	exon8	c.G6553T	p.E2185X	.	.	99	4	116	0	.	139
HMCN1	83872	hgsc.bcm.edu	37	1	186031705	186031705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMCN1	NM_031935	exon48	c.A7486G	p.S2496G	.	.	86	5	123	0	.	113
HMCN1	83872	hgsc.bcm.edu	37	1	186157064	186157064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMCN1	NM_031935	exon106	c.G16464A	p.M5488I	.	.	119	6	186	0	.	113
HMGCR	3156	hgsc.bcm.edu;bcgsc.ca	37	5	74638583	74638583	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HMGCR	NM_001130996	exon2	c.A153G	p.P51P	.	.	91	5	159	0	.	227
HNRNPA3	220988	hgsc.bcm.edu	37	2	178083814	178083814	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HNRNPA3	NM_194247	exon9	c.A1011G	p.G337G	.	.	87	4	116	0	.	70
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	151	12	231	2	.	68
HOMER1	9456	hgsc.bcm.edu;bcgsc.ca	37	5	78692728	78692728	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMER1	NM_001277077	exon6	c.406-2A>G	.	.	.	123	5	240	0	.	90
HOMEZ	57594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23745570	23745570	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOMEZ	NM_020834	exon2	c.T867C	p.S289S	.	.	132	18	138	0	.	22
HOOK3	84376	hgsc.bcm.edu	37	8	42819473	42819473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HOOK3	NM_032410	exon9	c.A635G	p.E212G	.	.	80	5	86	0	.	154
HPS5	11234	hgsc.bcm.edu	37	11	18317630	18317630	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HPS5	NM_181507	exon13	c.A1550G	p.K517R	.	.	72	4	97	0	.	133
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152191383	152191383	+	Nonsense_Mutation	SNP	G	G	A	rs148651006	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HRNR	NM_001009931	exon3	c.C2722T	p.R908X	.	.	126	48	166	0	A|0.000;G|0.999;T|0.000	93
HS3ST3A1	9955	hgsc.bcm.edu	37	17	13504323	13504323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HS3ST3A1	NM_006042	exon1	c.C124A	p.L42M	.	.	56	4	114	0	.	515
HS6ST3	266722	hgsc.bcm.edu	37	13	97484904	97484904	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HS6ST3	NM_153456	exon2	c.T868C	p.W290R	.	.	93	4	104	0	.	92
HSD17B4	3295	hgsc.bcm.edu	37	5	118867101	118867101	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HSD17B4	NM_001199292	exon21	c.1939+2T>A	.	.	.	84	4	141	0	.	92
HSDL1	83693	bcgsc.ca	37	16	84163688	84163688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HSDL1	NM_031463	exon4	c.C569A	p.P190Q	.	.	170	5	306	0	.	90
HSP90AA1	3320	broad.mit.edu	37	14	102551652	102551652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HSP90AA1	NM_001017963	exon5	c.T1012C	p.Y338H	.	.	284	6	336	1	.	949
HUWE1	10075	hgsc.bcm.edu;bcgsc.ca	37	X	53579842	53579842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	HUWE1	NM_031407	exon62	c.C8507A	p.P2836Q	.	.	83	4	115	0	.	280
IARS	3376	hgsc.bcm.edu	37	9	95033301	95033301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IARS	NM_013417	exon12	c.A1171G	p.T391A	.	.	65	4	96	0	.	92
ICA1	3382	bcgsc.ca	37	7	8153639	8153639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ICA1	NM_022307	exon14	c.T1366C	p.F456L	.	.	207	6	243	0	.	515
IFNL1	282618	hgsc.bcm.edu	37	19	39788656	39788656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_172140	exon3	c.T302C	p.V101A	.	.	117	5	114	0	.	.
IFT52	51098	bcgsc.ca	37	20	42223456	42223456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IFT52	NM_016004	exon2	c.A118G	p.S40G	.	.	215	7	222	0	.	92
IGF2R	3482	hgsc.bcm.edu	37	6	160491044	160491044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGF2R	NM_000876	exon31	c.G4397T	p.R1466L	.	.	95	4	175	0	.	118
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201186487	201186487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGFN1	NM_001164586	exon17	c.C9668T	p.A3223V	.	.	182	23	235	0	.	71
IGSF22	283284	hgsc.bcm.edu	37	11	18735929	18735929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IGSF22	NM_173588	exon13	c.G1693T	p.G565C	.	.	99	4	98	0	.	140
IL17REL	400935	hgsc.bcm.edu	37	22	50439203	50439203	+	Silent	SNP	G	G	T	rs143091006	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL17REL	NM_001001694	exon5	c.C199A	p.R67R	.	.	96	5	99	0	G|0.998;A|0.002	23
IL6R	3570	hgsc.bcm.edu	37	1	154437808	154437808	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL6R	NM_000565	exon10	c.A1359G	p.P453P	.	.	105	5	197	0	.	229
IL6ST	3572	hgsc.bcm.edu	37	5	55237449	55237449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IL6ST	NM_002184	exon17	c.A2218T	p.S740C	.	.	97	4	155	0	.	290
ILF2	3608	hgsc.bcm.edu	37	1	153635509	153635509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ILF2	NM_004515	exon12	c.A907G	p.T303A	.	.	122	5	162	0	.	90
INADL	10207	hgsc.bcm.edu	37	1	62330060	62330060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon20	c.A2590G	p.M864V	.	.	100	4	170	0	.	94
INADL	10207	hgsc.bcm.edu;bcgsc.ca	37	1	62582321	62582321	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INADL	NM_176877	exon36	c.C4773A	p.A1591A	.	.	51	4	95	0	.	94
INHBC	3626	hgsc.bcm.edu	37	12	57828719	57828719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INHBC	NM_005538	exon1	c.T50C	p.V17A	.	.	68	4	114	0	.	514
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15247245	15247245	+	Silent	SNP	G	G	T	rs111784838	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon9	c.G1182T	p.A394A	.	.	66	4	96	0	G|0.999;A|0.001	94
INSC	387755	hgsc.bcm.edu;bcgsc.ca	37	11	15262003	15262003	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSC	NM_001031853	exon12	c.T1545C	p.R515R	.	.	111	5	165	0	.	94
INSRR	3645	hgsc.bcm.edu	37	1	156813015	156813015	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INSRR	NM_014215	exon17	c.T2907C	p.P969P	.	.	75	4	131	0	.	1403
INTS12	57117	broad.mit.edu	37	4	106604035	106604035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS12	NM_020395	exon8	c.G1244A	p.S415N	.	.	797	15	864	0	.	68
INTS4	92105	hgsc.bcm.edu	37	11	77692604	77692604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS4	NM_033547	exon3	c.A265G	p.R89G	.	.	122	5	166	0	.	92
INTS7	25896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	212139822	212139822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	INTS7	NM_015434	exon16	c.A2133T	p.L711F	.	.	90	39	111	0	.	90
IQCC	55721	hgsc.bcm.edu	37	1	32672950	32672950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQCC	NM_001160042	exon5	c.A908G	p.Q303R	.	.	110	5	185	0	.	94
IQCF5	389124	hgsc.bcm.edu	37	3	51908112	51908112	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001145059	exon2	c.A84G	p.R28R	.	.	91	5	96	0	.	.
IQCH	64799	hgsc.bcm.edu	37	15	67664646	67664646	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQCH	NM_001031715	exon9	c.C951A	p.V317V	.	.	139	6	120	0	.	94
IQGAP1	8826	hgsc.bcm.edu	37	15	90999516	90999516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IQGAP1	NM_003870	exon15	c.C1745T	p.T582M	.	.	90	4	107	0	.	950
IRGC	56269	bcgsc.ca	37	19	44222990	44222990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRGC	NM_019612	exon2	c.A280G	p.M94V	.	.	70	4	113	1	.	70
IRGC	56269	hgsc.bcm.edu;bcgsc.ca	37	19	44223753	44223753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRGC	NM_019612	exon2	c.C1043T	p.S348F	.	.	63	4	93	0	.	70
IRS4	8471	hgsc.bcm.edu	37	X	107975816	107975816	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IRS4	NM_003604	exon1	c.C3759A	p.P1253P	.	.	89	4	77	0	.	623
ISCA2	122961	hgsc.bcm.edu;bcgsc.ca	37	14	74960541	74960541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISCA2	NM_001272007	exon1	c.A64G	p.R22G	.	.	79	5	94	0	.	90
ISLR	3671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74468160	74468160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISLR	NM_201526	exon2	c.G961A	p.E321K	.	.	36	16	67	0	.	155
ISOC1	51015	hgsc.bcm.edu	37	5	128442751	128442751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ISOC1	NM_016048	exon4	c.T746C	p.L249P	.	.	94	4	150	0	.	90
ITGA2	3673	bcgsc.ca	37	5	52382788	52382788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGA2	NM_002203	exon28	c.T3265C	p.F1089L	.	.	103	4	162	0	.	226
ITGAL	3683	hgsc.bcm.edu;bcgsc.ca	37	16	30500452	30500452	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAL	NM_002209	exon10	c.C1056T	p.S352S	.	.	100	4	124	0	.	994
ITGAM	3684	bcgsc.ca	37	16	31282343	31282343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAM	NM_000632	exon6	c.T496C	p.F166L	.	.	133	5	203	1	.	226
ITGAX	3687	hgsc.bcm.edu;bcgsc.ca	37	16	31373480	31373480	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGAX	NM_000887	exon11	c.A1171T	p.I391F	.	.	86	4	170	0	.	229
ITGB3	3690	hgsc.bcm.edu	37	17	45363647	45363647	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB3	NM_000212	exon5	c.C636T	p.P212P	.	.	86	4	101	0	.	714
ITGB4	3691	hgsc.bcm.edu	37	17	73738768	73738768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB4	NM_001005731	exon25	c.A2888G	p.E963G	.	.	90	5	117	0	.	227
ITGB7	3695	hgsc.bcm.edu;bcgsc.ca	37	12	53586193	53586193	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITGB7	NM_000889	exon14	c.C2076T	p.T692T	.	.	35	5	55	0	.	231
ITLN2	142683	hgsc.bcm.edu	37	1	160919847	160919847	+	Missense_Mutation	SNP	G	G	T	rs201391588	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ITLN2	NM_080878	exon6	c.C710A	p.P237Q	.	.	93	4	129	0	.	91
IVD	3712	hgsc.bcm.edu	37	15	40700141	40700141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IVD	NM_002225	exon3	c.T247C	p.F83L	.	.	74	4	81	0	.	91
IZUMO4	113177	hgsc.bcm.edu	37	19	2096945	2096945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	IZUMO4	NM_001039846	exon1	c.A1G	p.M1V	.	.	32	5	39	0	.	90
JMJD1C	221037	hgsc.bcm.edu	37	10	64946064	64946064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD1C	NM_032776	exon19	c.A6650G	p.D2217G	.	.	94	4	132	0	.	275
JMJD6	23210	hgsc.bcm.edu;bcgsc.ca	37	17	74716510	74716510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMJD6	NM_001081461	exon5	c.A1012G	p.I338V	.	.	77	4	86	0	.	93
JMY	133746	hgsc.bcm.edu;bcgsc.ca	37	5	78587025	78587025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JMY	NM_152405	exon4	c.T1430C	p.M477T	.	.	77	4	119	0	.	227
JPH3	57338	hgsc.bcm.edu	37	16	87723326	87723326	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	JPH3	NM_020655	exon4	c.C1360T	p.Q454X	.	.	71	4	206	0	.	92
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	124385357	124385357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KALRN	NM_001024660	exon46	c.A6404G	p.D2135G	.	.	95	5	121	0	.	738
KAT6B	23522	hgsc.bcm.edu;bcgsc.ca	37	10	76788578	76788578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_012330	exon18	c.T3996C	p.P1332P	.	.	103	5	114	0	.	.
KATNAL2	83473	ucsc.edu;bcgsc.ca	37	18	44579252	44579252	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KATNAL2	.	.	.	.	.	.	39	4	60	0	.	93
KAZN	23254	hgsc.bcm.edu	37	1	15430640	15430640	+	Missense_Mutation	SNP	G	G	A	rs147449416		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KAZN	NM_201628	exon13	c.G2003A	p.R668Q	.	.	73	4	118	0	G|1.000;A|0.000	91
KCNJ15	3772	hgsc.bcm.edu	37	21	39672189	39672189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNJ15	NM_002243	exon4	c.A1006G	p.T336A	.	.	150	6	167	0	.	157
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	2729648	2729648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCNV2	NM_133497	exon2	c.T1559G	p.F520C	.	.	113	11	187	0	.	515
KCTD4	386618	hgsc.bcm.edu	37	13	45768400	45768400	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KCTD4	NM_198404	exon2	c.C303A	p.P101P	.	.	99	4	133	0	.	90
KEAP1	9817	hgsc.bcm.edu	37	19	10610159	10610159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KEAP1	NM_012289	exon2	c.C551A	p.A184D	.	.	88	5	93	0	.	637
KIAA0196	9897	hgsc.bcm.edu	37	8	126062907	126062907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0196	NM_014846	exon18	c.G2098A	p.V700M	.	.	87	4	77	0	.	92
KIAA0317	9870	hgsc.bcm.edu;bcgsc.ca	37	14	75130431	75130431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA0317	NM_001039479	exon20	c.A2464G	p.M822V	.	.	70	5	71	0	.	525
KIAA1109	84162	hgsc.bcm.edu	37	4	123265683	123265683	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1109	NM_015312	exon72	c.A12700T	p.S4234C	.	.	87	4	157	0	.	80
KIAA1147	57189	hgsc.bcm.edu	37	7	141362629	141362629	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1147	NM_001080392	exon9	c.C1195A	p.R399R	.	.	95	4	117	0	.	69
KIAA1211	57482	hgsc.bcm.edu	37	4	57181298	57181298	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1211	NM_020722	exon8	c.G1630T	p.G544X	.	.	91	4	152	0	.	70
KIAA1324	57535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109715162	109715162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1324	NM_020775	exon5	c.C668A	p.T223N	.	.	153	63	236	0	.	157
KIAA1328	57536	bcgsc.ca	37	18	34647337	34647337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1328	NM_020776	exon7	c.C1061A	p.P354H	.	.	154	6	277	0	.	90
KIAA1468	57614	bcgsc.ca	37	18	59941309	59941309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1468	NM_020854	exon21	c.G2857A	p.V953M	.	.	131	5	198	0	.	158
KIAA1522	57648	hgsc.bcm.edu	37	1	33238480	33238480	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1522	NM_020888	exon7	c.C3277T	p.L1093L	.	.	82	4	152	0	.	90
KIAA1551	55196	hgsc.bcm.edu;bcgsc.ca	37	12	32135858	32135858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018169	exon4	c.A1969G	p.T657A	.	.	73	4	87	0	.	.
KIAA1586	57691	hgsc.bcm.edu;bcgsc.ca	37	6	56917492	56917492	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1586	NM_020931	exon4	c.T195C	p.F65F	.	.	81	4	96	0	.	44
KIAA1598	57698	hgsc.bcm.edu	37	10	118719735	118719735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1598	NM_001127211	exon4	c.A179G	p.H60R	.	.	76	4	78	0	.	90
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93462654	93462654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1731	NM_033395	exon26	c.G7357A	p.V2453I	.	.	80	28	86	0	.	22
KIAA1755	85449	hgsc.bcm.edu	37	20	36841909	36841909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIAA1755	NM_001029864	exon14	c.G3138A	p.M1046I	.	.	68	4	81	0	.	95
KIF4A	24137	bcgsc.ca	37	X	69639946	69639946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIF4A	NM_012310	exon31	c.T3530C	p.L1177P	.	.	137	5	75	0	.	134
KIF5A	3798	hgsc.bcm.edu	37	12	57944131	57944131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIF5A	NM_004984	exon1	c.G77T	p.R26L	.	.	97	4	154	0	.	517
KIF6	221458	hgsc.bcm.edu	37	6	39552745	39552745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIF6	NM_145027	exon9	c.T1006C	p.C336R	.	.	77	4	97	0	.	713
KISS1R	84634	hgsc.bcm.edu	37	19	917723	917723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KISS1R	NM_032551	exon1	c.G221A	p.R74Q	.	.	94	4	123	0	.	91
KIT	3815	bcgsc.ca	37	4	55592102	55592102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KIT	NM_000222	exon9	c.A1426G	p.S476G	.	.	197	6	283	2	.	20166
KLF8	11279	hgsc.bcm.edu	37	X	56291711	56291711	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLF8	NM_001159296	exon4	c.A180G	p.P60P	.	.	96	4	138	0	.	131
KLHL17	339451	hgsc.bcm.edu	37	1	899359	899359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL17	NM_198317	exon9	c.G1415T	p.R472L	.	.	36	4	109	0	.	90
KLHL22	84861	hgsc.bcm.edu	37	22	20796519	20796519	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL22	NM_032775	exon7	c.C1746T	p.S582S	.	.	97	4	129	0	.	278
KLHL25	64410	bcgsc.ca	37	15	86312054	86312054	+	Silent	SNP	G	G	T	rs200685393	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL25	NM_022480	exon2	c.C988A	p.R330R	.	.	100	5	140	1	G|0.999;A|0.000	92
KLHL30	377007	hgsc.bcm.edu;bcgsc.ca	37	2	239056574	239056574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLHL30	NM_198582	exon6	c.C1250T	p.A417V	.	.	76	4	95	0	.	22
KLK5	25818	bcgsc.ca	37	19	51455877	51455877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KLK5	NM_012427	exon2	c.T37C	p.C13R	.	.	59	5	57	0	.	226
KMO	8564	hgsc.bcm.edu;bcgsc.ca	37	1	241718930	241718930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KMO	NM_003679	exon5	c.A331G	p.R111G	.	.	84	4	94	0	.	92
KPNA5	3841	bcgsc.ca	37	6	117043404	117043404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KPNA5	NM_002269	exon9	c.A872G	p.Q291R	.	.	98	4	208	1	.	290
KRT32	3882	hgsc.bcm.edu	37	17	39620667	39620667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT32	NM_002278	exon4	c.G737T	p.G246V	.	.	96	4	98	0	.	90
KRT35	3886	hgsc.bcm.edu	37	17	39637018	39637018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT35	NM_002280	exon1	c.A332T	p.Y111F	.	.	113	6	115	0	.	92
KRT85	3891	hgsc.bcm.edu	37	12	52754781	52754781	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRT85	NM_002283	exon9	c.C1380T	p.S460S	.	.	79	4	117	0	.	91
KRTAP1-5	83895	hgsc.bcm.edu	37	17	39183240	39183240	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_031957	exon1	c.C168T	p.C56C	.	.	132	9	154	0	.	.
KRTAP5-11	440051	hgsc.bcm.edu	37	11	71293531	71293531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KRTAP5-11	NM_001005405	exon1	c.A353G	p.Q118R	.	.	102	7	165	0	.	90
KSR2	283455	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	117969500	117969500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	KSR2	NM_173598	exon11	c.A1613G	p.Y538C	.	.	40	4	68	0	.	1449
L3MBTL1	26013	hgsc.bcm.edu	37	20	42161426	42161426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL1	NM_032107	exon12	c.T1232C	p.L411P	.	.	125	5	159	0	.	227
L3MBTL3	84456	hgsc.bcm.edu	37	6	130407320	130407320	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL3	NM_032438	exon16	c.T1443C	p.L481L	.	.	98	4	159	0	.	96
L3MBTL4	91133	hgsc.bcm.edu	37	18	6244510	6244510	+	Silent	SNP	C	C	T	rs200697690		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	L3MBTL4	NM_173464	exon6	c.G297A	p.S99S	.	.	60	4	148	0	C|0.999;T|0.001	93
LAMA5	3911	bcgsc.ca	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMA5	NM_005560	exon50	c.T6668G	p.L2223R	.	.	94	23	127	18	.	93
LAMB2	3913	hgsc.bcm.edu	37	3	49159200	49159200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMB2	NM_002292	exon30	c.A5017G	p.K1673E	.	.	86	4	88	0	.	93
LAMC1	3915	hgsc.bcm.edu	37	1	183111868	183111868	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMC1	NM_002293	exon28	c.C4773T	p.D1591D	.	.	95	4	113	0	.	252
LAMC3	10319	bcgsc.ca	37	9	133946884	133946884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAMC3	NM_006059	exon18	c.A3083G	p.K1028R	.	.	60	4	75	0	.	93
LAMP5	24141	hgsc.bcm.edu;bcgsc.ca	37	20	9496099	9496099	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001199897	exon2	c.65-1G>T	.	.	.	97	6	73	0	.	.
LANCL2	55915	ucsc.edu;bcgsc.ca	37	7	55459529	55459529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LANCL2	NM_018697	exon2	c.A248G	p.D83G	.	.	48	4	36	0	.	516
LAS1L	81887	hgsc.bcm.edu;bcgsc.ca	37	X	64744928	64744928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAS1L	NM_031206	exon8	c.A959G	p.E320G	.	.	65	4	54	0	.	196
LAX1	54900	hgsc.bcm.edu	37	1	203741220	203741220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LAX1	NM_017773	exon4	c.G335T	p.R112L	.	.	67	4	107	0	.	514
LDHC	3948	bcgsc.ca	37	11	18436829	18436829	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LDHC	NM_002301	exon3	c.A225G	p.S75S	.	.	170	6	254	0	.	226
LDLRAD1	388633	hgsc.bcm.edu	37	1	54474774	54474774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LDLRAD1	NM_001010978	exon6	c.T499C	p.W167R	.	.	95	5	206	0	.	137
LDLRAD1	388633	ucsc.edu	37	1	54477846	54477846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LDLRAD1	NM_001010978	exon4	c.C310T	p.H104Y	.	.	45	4	110	0	.	137
LDLRAP1	26119	bcgsc.ca	37	1	25891680	25891680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LDLRAP1	NM_015627	exon8	c.T764C	p.L255P	.	.	216	7	405	0	.	91
LFNG	3955	hgsc.bcm.edu;bcgsc.ca	37	7	2552813	2552813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LFNG	NM_001166355	exon2	c.A70G	p.S24G	.	.	98	4	140	0	.	636
LGI3	203190	hgsc.bcm.edu;bcgsc.ca	37	8	22012911	22012911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGI3	NM_139278	exon2	c.A272G	p.Q91R	.	.	32	4	113	0	.	91
LGR5	8549	hgsc.bcm.edu;bcgsc.ca	37	12	71955573	71955573	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR5	NM_003667	exon8	c.C798T	p.S266S	.	.	59	3	81	0	.	527
LGR6	59352	hgsc.bcm.edu	37	1	202287998	202287998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LGR6	NM_001017403	exon18	c.C2567T	p.A856V	.	.	94	4	167	0	.	160
LIFR	3977	bcgsc.ca	37	5	38482743	38482743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIFR	NM_002310	exon19	c.T2618C	p.I873T	.	.	350	8	546	0	.	1173
LIFR	3977	hgsc.bcm.edu	37	5	38481738	38481738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIFR	NM_002310	exon20	c.T3253C	p.W1085R	.	.	96	4	144	0	.	1173
LIPC	3990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	58840664	58840664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIPC	NM_000236	exon6	c.G944A	p.S315N	.	.	135	64	172	0	.	91
LIPH	200879	broad.mit.edu	37	3	185232230	185232230	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LIPH	NM_139248	exon8	c.A1062G	p.K354K	.	.	328	8	425	1	.	92
LMBRD2	92255	bcgsc.ca	37	5	36143278	36143278	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LMBRD2	NM_001007527	exon2	c.G174T	p.T58T	.	.	276	8	419	0	.	90
LMO7	4008	bcgsc.ca	37	13	76409376	76409376	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LMO7	NM_015842	exon15	c.T2535C	p.P845P	.	.	131	6	164	1	.	586
LOC146880	0	bcgsc.ca	37	17	62747936	62747936	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	82	4	99	0	.	.
LOC254896	0	bcgsc.ca	37	8	22960489	22960489	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	51	4	110	0	.	.
LPA	4018	hgsc.bcm.edu	37	6	160978594	160978594	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPA	NM_005577	exon30	c.C4641A	p.T1547T	.	.	100	4	173	0	.	74
LPHN1	22859	hgsc.bcm.edu;bcgsc.ca	37	19	14274128	14274128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN1	NM_001008701	exon6	c.C500A	p.P167Q	.	.	77	4	134	0	.	523
LPHN2	23266	hgsc.bcm.edu	37	1	82409131	82409131	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPHN2	NM_012302	exon5	c.T876C	p.N292N	.	.	99	4	143	0	.	525
LPO	4025	hgsc.bcm.edu	37	17	56326538	56326538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LPO	NM_006151	exon5	c.G443T	p.R148M	.	.	62	4	95	0	.	91
LRP11	84918	hgsc.bcm.edu	37	6	150147437	150147437	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRP11	NM_032832	exon6	c.T1311C	p.G437G	.	.	99	5	168	0	.	90
LRP2	4036	hgsc.bcm.edu	37	2	170058302	170058302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRP2	NM_004525	exon44	c.A8288G	p.Y2763C	.	.	70	4	81	0	.	175
LRRC24	441381	hgsc.bcm.edu	37	8	145749598	145749598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRC24	NM_001024678	exon4	c.G503A	p.G168E	.	.	66	4	76	0	.	90
LRRC28	123355	bcgsc.ca	37	15	99903439	99903439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRC28	NM_144598	exon9	c.A1000G	p.R334G	.	.	76	4	84	0	.	90
LRRK2	120892	hgsc.bcm.edu	37	12	40677799	40677799	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRK2	NM_198578	exon19	c.C2364T	p.S788S	.	.	104	5	181	0	.	533
LRRN1	57633	hgsc.bcm.edu;bcgsc.ca	37	3	3887042	3887042	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRN1	NM_020873	exon2	c.T717C	p.D239D	.	.	66	4	79	0	.	90
LRRTM3	347731	hgsc.bcm.edu;bcgsc.ca	37	10	68857536	68857536	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LRRTM3	NM_178011	exon3	c.T1728A	p.H576Q	.	.	91	4	93	0	.	93
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48823914	48823914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	LUC7L3	NM_006107	exon9	c.G989A	p.R330Q	.	.	336	179	322	1	.	90
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39816575	39816575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MACF1	NM_012090	exon39	c.G4898T	p.R1633L	.	.	51	5	90	0	.	165
MAGEB2	4113	hgsc.bcm.edu	37	X	30236769	30236769	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAGEB2	NM_002364	exon2	c.T72C	p.G24G	.	.	96	4	125	0	.	131
MAN2A1	4124	bcgsc.ca	37	5	109065216	109065216	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAN2A1	NM_002372	exon4	c.707+2T>C	.	.	.	85	4	108	1	.	92
MAP1B	4131	hgsc.bcm.edu	37	5	71493402	71493402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1B	NM_005909	exon5	c.A4220G	p.E1407G	.	.	70	4	121	0	.	155
MAP1S	55201	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17837556	17837556	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP1S	NM_018174	exon5	c.C1363T	p.R455X	.	.	46	10	49	0	.	90
MAP2K5	5607	hgsc.bcm.edu	37	15	67835762	67835762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP2K5	NM_145160	exon1	c.A89G	p.D30G	.	.	120	5	191	0	.	546
MAP3K15	389840	mdanderson.org	37	X	19410216	19410216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP3K15	NM_001001671	exon18	c.G2335A	p.V779I	.	.	16	3	31	0	.	335
MAP3K5	4217	hgsc.bcm.edu;bcgsc.ca	37	6	136882716	136882716	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP3K5	NM_005923	exon28	c.C3942A	p.T1314T	.	.	128	9	218	0	.	982
MAP4K4	9448	hgsc.bcm.edu	37	2	102490567	102490567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAP4K4	NM_145686	exon24	c.A2761G	p.R921G	.	.	111	6	157	0	.	547
MAPRE3	22924	hgsc.bcm.edu	37	2	27248785	27248785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MAPRE3	NM_012326	exon6	c.A662G	p.K221R	.	.	86	4	96	0	.	91
MBLAC1	255374	bcgsc.ca	37	7	99725046	99725046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MBLAC1	NM_203397	exon2	c.T28C	p.S10P	.	.	42	4	41	0	.	135
MCAT	27349	hgsc.bcm.edu	37	22	43529443	43529443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCAT	NM_173467	exon4	c.C779T	p.T260I	.	.	69	4	91	0	.	91
MCM10	55388	hgsc.bcm.edu;bcgsc.ca	37	10	13212949	13212949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM10	NM_018518	exon3	c.C35T	p.T12I	.	.	121	5	138	0	.	653
MCM2	4171	hgsc.bcm.edu;bcgsc.ca	37	3	127325501	127325501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM2	NM_004526	exon6	c.C942A	p.S314R	.	.	57	4	84	0	.	230
MCM3AP	8888	hgsc.bcm.edu	37	21	47704423	47704423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCM3AP	NM_003906	exon1	c.G778A	p.G260S	.	.	99	5	103	0	.	291
MCTP1	79772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	94245051	94245051	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCTP1	NM_024717	exon10	c.A1557G	p.E519E	.	.	105	6	175	0	.	92
MCU	90550	hgsc.bcm.edu	37	10	74631338	74631338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MCU	NM_138357	exon6	c.G861T	p.Q287H	.	.	82	4	52	0	.	90
MDC1	9656	bcgsc.ca	37	6	30672020	30672020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MDC1	NM_014641	exon10	c.T4940C	p.V1647A	.	.	243	8	293	0	.	273
MDN1	23195	hgsc.bcm.edu	37	6	90393616	90393616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MDN1	NM_014611	exon72	c.T11837C	p.V3946A	.	.	93	4	157	0	.	100
MED12	9968	hgsc.bcm.edu	37	X	70352238	70352238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED12	NM_005120	exon31	c.G4265T	p.R1422L	.	.	76	4	59	0	.	272
MED12L	116931	hgsc.bcm.edu	37	3	150911407	150911407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED12L	NM_053002	exon14	c.A2099G	p.D700G	.	.	121	5	133	0	.	576
MED14	9282	hgsc.bcm.edu;bcgsc.ca	37	X	40522223	40522223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED14	NM_004229	exon26	c.C3638T	p.S1213L	.	.	95	4	115	0	.	289
MED24	9862	bcgsc.ca	37	17	38189425	38189425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MED24	NM_014815	exon8	c.A706G	p.M236V	.	.	78	4	95	0	.	187
MEIOB	254528	hgsc.bcm.edu	37	16	1884289	1884289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001163560	exon14	c.A1384G	p.S462G	.	.	90	4	173	0	.	.
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29788190	29788190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MEP1B	NM_005925	exon9	c.C875G	p.P292R	.	.	99	27	154	0	.	92
MET	4233	bcgsc.ca	37	7	116371790	116371790	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MET	NM_000245	exon3	c.T1269C	p.A423A	.	.	172	6	203	0	.	5874
METAP1D	254042	broad.mit.edu;bcgsc.ca	37	2	172944920	172944920	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	METAP1D	NM_199227	exon9	c.C915T	p.S305S	.	.	142	5	205	0	.	90
MFAP3	4238	hgsc.bcm.edu	37	5	153432861	153432861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MFAP3	NM_005927	exon3	c.T677C	p.M226T	.	.	100	4	206	0	.	90
MGAT3	4248	hgsc.bcm.edu	37	22	39883658	39883658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MGAT3	NM_002409	exon2	c.G306T	p.E102D	.	.	152	7	185	0	.	90
MICAL1	64780	bcgsc.ca	37	6	109770918	109770918	+	Missense_Mutation	SNP	C	C	T	rs140684172		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MICAL1	NM_022765	exon10	c.G1376A	p.G459E	.	.	49	4	86	0	C|1.000;T|0.000	154
MID1	4281	hgsc.bcm.edu;bcgsc.ca	37	X	10437803	10437803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MID1	NM_001193278	exon7	c.G1372A	p.D458N	.	.	85	4	89	0	.	229
MIER2	54531	hgsc.bcm.edu	37	19	327889	327889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MIER2	NM_017550	exon4	c.A344G	p.N115S	.	.	113	5	146	0	.	90
MIRLET7BHG	400931	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46505777	46505777	+	RNA	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	142	56	206	0	.	.
MKS1	54903	bcgsc.ca	37	17	56291189	56291189	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MKS1	NM_017777	exon7	c.A686G	p.K229R	.	.	173	6	174	1	.	91
MLF1IP	79682	hgsc.bcm.edu;bcgsc.ca	37	4	185646185	185646185	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLF1IP	NM_024629	exon4	c.T246C	p.A82A	.	.	83	5	111	0	.	90
MLL2	8085	hgsc.bcm.edu	37	12	49432443	49432443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon34	c.G8696A	p.G2899D	.	.	57	4	91	0	.	612
MLL2	8085	hgsc.bcm.edu;bcgsc.ca	37	12	49421091	49421091	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL2	NM_003482	exon48	c.A14658G	p.P4886P	.	.	114	5	172	0	.	612
MLL	4297	hgsc.bcm.edu	37	11	118392112	118392112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MLL	NM_001197104	exon35	c.G11623A	p.E3875K	.	.	82	4	113	0	.	1255
MMP1	4312	hgsc.bcm.edu	37	11	102663360	102663360	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMP1	NM_002421	exon7	c.A1009G	p.R337G	.	.	83	4	105	0	.	229
MMP9	4318	hgsc.bcm.edu	37	20	44640845	44640845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMP9	NM_004994	exon7	c.A1067G	p.K356R	.	.	63	4	82	0	.	652
MMS19	64210	hgsc.bcm.edu	37	10	99220678	99220678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_022362	exon24	c.A2398G	p.T800A	.	.	98	4	86	0	.	.
MMS22L	253714	hgsc.bcm.edu	37	6	97613138	97613138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MMS22L	NM_198468	exon21	c.A3205G	p.I1069V	.	.	72	4	104	0	.	92
MNT	4335	bcgsc.ca	37	17	2303941	2303941	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MNT	NM_020310	exon1	c.A66G	p.R22R	.	.	248	9	307	2	.	227
MON1B	22879	hgsc.bcm.edu	37	16	77225506	77225506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MON1B	NM_014940	exon2	c.G124T	p.E42X	.	.	82	4	154	0	.	90
MPDZ	8777	hgsc.bcm.edu;bcgsc.ca	37	9	13193255	13193255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPDZ	NM_003829	exon14	c.A1714G	p.T572A	.	.	60	4	78	0	.	231
MPHOSPH8	54737	hgsc.bcm.edu;bcgsc.ca	37	13	20237233	20237233	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPHOSPH8	NM_017520	exon9	c.C1986T	p.V662V	.	.	73	4	99	0	.	68
MPI	4351	hgsc.bcm.edu	37	15	75183814	75183814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MPI	NM_002435	exon3	c.A239G	p.D80G	.	.	111	6	130	0	.	92
MRGBP	55257	hgsc.bcm.edu	37	20	61428015	61428015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018270	exon1	c.A140G	p.K47R	.	.	53	4	51	0	.	.
MS4A4A	51338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60073590	60073590	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MS4A4A	NM_148975	exon6	c.G564A	p.V188V	.	.	458	95	674	0	.	90
MS4A8	83661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60476245	60476245	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_031457	exon5	c.C525A	p.A175A	.	.	151	56	238	0	.	.
MSH3	4437	bcgsc.ca	37	5	80037332	80037332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSH3	NM_002439	exon11	c.A1618G	p.T540A	.	.	226	6	372	3	.	661
MSH6	2956	hgsc.bcm.edu	37	2	48033988	48033988	+	Missense_Mutation	SNP	A	A	G	rs199739099		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSH6	NM_000179	exon10	c.A4072G	p.K1358E	.	.	74	4	109	0	A|1.000;G|0.000	3014
MSLN	10232	bcgsc.ca	37	16	816428	816428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSLN	NM_005823	exon13	c.A1168G	p.T390A	.	.	77	4	178	1	.	91
MSLN	10232	hgsc.bcm.edu;bcgsc.ca	37	16	818713	818713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MSLN	NM_013404	exon17	c.C1873A	p.L625I	.	.	59	4	149	0	.	91
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49940121	49940121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MST1R	NM_001244937	exon1	c.C922T	p.R308C	.	.	55	24	72	0	.	1406
MTG1	92170	hgsc.bcm.edu	37	10	135215725	135215725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MTG1	NM_138384	exon8	c.A646G	p.T216A	.	.	89	4	113	0	.	91
MUC17	140453	bcgsc.ca	37	7	100693763	100693763	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUC17	NM_001040105	exon7	c.12723-2A>G	.	.	.	227	7	251	0	.	95
MUC2	4583	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	11	1092653	1092653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUC2	NM_002457	exon30	c.C4472A	p.T1491K	.	.	2125	391	3967	2	.	90
MUTYH	4595	hgsc.bcm.edu	37	1	45799158	45799158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MUTYH	NM_001128425	exon3	c.A275G	p.E92G	.	.	92	4	160	0	.	1083
MYEF2	50804	hgsc.bcm.edu	37	15	48441407	48441407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYEF2	NM_016132	exon15	c.A1540G	p.M514V	.	.	121	5	132	0	.	523
MYH10	4628	hgsc.bcm.edu	37	17	8455422	8455422	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYH10	NM_001256012	exon9	c.T861C	p.D287D	.	.	83	4	203	0	.	92
MYH13	8735	bcgsc.ca	37	17	10235535	10235535	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYH13	NM_003802	exon20	c.C2179A	p.R727R	.	.	75	4	128	1	.	6
MYH6	4624	hgsc.bcm.edu	37	14	23865912	23865912	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYH6	NM_002471	exon19	c.C2283A	p.G761G	.	.	124	5	156	0	.	94
MYO15A	51168	hgsc.bcm.edu	37	17	18047030	18047030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO15A	NM_016239	exon26	c.A5966G	p.E1989G	.	.	162	7	174	0	.	97
MYO18A	399687	hgsc.bcm.edu	37	17	27437088	27437088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO18A	NM_078471	exon19	c.A3119G	p.K1040R	.	.	64	4	77	0	.	22
MYO3A	53904	hgsc.bcm.edu	37	10	26312957	26312957	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO3A	NM_017433	exon9	c.A738G	p.P246P	.	.	124	5	163	0	.	1007
MYO5B	4645	hgsc.bcm.edu	37	18	47421462	47421462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO5B	NM_001080467	exon22	c.A2894G	p.E965G	.	.	78	4	145	0	.	72
MYO9A	4649	hgsc.bcm.edu;bcgsc.ca	37	15	72152137	72152137	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYO9A	NM_006901	exon34	c.T6092C	p.L2031S	.	.	53	4	97	0	.	93
MYPN	84665	hgsc.bcm.edu;bcgsc.ca	37	10	69925542	69925542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYPN	NM_001256267	exon10	c.A1567G	p.T523A	.	.	76	4	85	0	.	95
MYT1	4661	bcgsc.ca	37	20	62853332	62853332	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MYT1	NM_004535	exon14	c.G2328T	p.P776P	.	.	195	6	217	0	.	704
MZF1	7593	hgsc.bcm.edu	37	19	59082638	59082638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	MZF1	NM_198055	exon2	c.C119A	p.P40H	.	.	90	4	76	0	.	91
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41946891	41946891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAA16	NM_024561	exon17	c.T2080C	p.S694P	.	.	89	4	121	0	.	90
NACAD	23148	bcgsc.ca	37	7	45124159	45124159	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001146334	exon2	c.T1620C	p.S540S	.	.	186	6	279	0	.	.
NADKD1	133686	hgsc.bcm.edu	37	5	36226594	36226594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NADKD1	NM_001085411	exon3	c.C461T	p.A154V	.	.	71	4	113	0	.	92
NAGLU	4669	hgsc.bcm.edu	37	17	40695160	40695160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAGLU	NM_000263	exon6	c.T1136C	p.L379P	.	.	92	3	88	0	.	90
NAT10	55226	hgsc.bcm.edu	37	11	34152409	34152409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NAT10	NM_024662	exon13	c.C1294A	p.R432S	.	.	94	5	100	0	.	92
NBAS	51594	hgsc.bcm.edu	37	2	15694236	15694236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBAS	NM_015909	exon4	c.G236T	p.G79V	.	.	124	5	124	0	.	94
NBEA	26960	hgsc.bcm.edu;bcgsc.ca	37	13	36046654	36046654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NBEA	NM_015678	exon41	c.T6566C	p.F2189S	.	.	63	4	100	0	.	144
NCAPG2	54892	hgsc.bcm.edu;bcgsc.ca	37	7	158472756	158472756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCAPG2	NM_017760	exon11	c.T1042C	p.S348P	.	.	120	5	146	0	.	272
NCKAP1L	3071	hgsc.bcm.edu;bcgsc.ca	37	12	54932744	54932744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCKAP1L	NM_005337	exon30	c.T3260C	p.L1087P	.	.	66	4	99	0	.	93
NCOR2	9612	hgsc.bcm.edu	37	12	124914172	124914172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCOR2	NM_006312	exon12	c.T1136C	p.L379P	.	.	103	5	159	0	.	229
NCOR2	9612	hgsc.bcm.edu	37	12	124957667	124957667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NCOR2	NM_006312	exon6	c.T422C	p.L141P	.	.	59	4	64	0	.	229
ND1	10625	broad.mit.edu	37	MT	3538	3538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	ENST00000361390	exon1	c.G232A	p.A78T	.	.	30	4	68	0	.	.
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	10915	10915	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	ENST00000361381	exon1	c.T156C	p.C52C	.	.	28	19	51	0	.	.
NDST3	9348	bcgsc.ca	37	4	119176800	119176800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NDST3	NM_004784	exon14	c.A2555G	p.K852R	.	.	170	5	212	0	.	153
NEDD4	4734	hgsc.bcm.edu;bcgsc.ca	37	15	56125247	56125247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NEDD4	NM_198400	exon20	c.G3527A	p.G1176D	.	.	82	5	82	0	.	723
NETO2	81831	hgsc.bcm.edu	37	16	47163230	47163230	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NETO2	NM_018092	exon3	c.G137A	p.G46D	.	.	79	4	138	0	.	90
NFASC	23114	hgsc.bcm.edu	37	1	204938107	204938107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NFASC	NM_015090	exon10	c.A1033G	p.K345E	.	.	89	4	188	0	.	139
NFE2L2	4780	hgsc.bcm.edu	37	2	178096043	178096043	+	Silent	SNP	A	A	G	rs189238236	by1000genomes	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NFE2L2	NM_006164	exon5	c.T1288C	p.L430L	.	.	144	7	174	0	A|0.999;G|0.000	90
NHS	4810	hgsc.bcm.edu	37	X	17745288	17745288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NHS	NM_198270	exon6	c.C2999A	p.P1000Q	.	.	73	4	104	0	.	197
NID1	4811	hgsc.bcm.edu	37	1	236157008	236157008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NID1	NM_002508	exon13	c.T2692C	p.C898R	.	.	77	4	161	0	.	154
NKAPL	222698	hgsc.bcm.edu	37	6	28227461	28227461	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NKAPL	NM_001007531	exon1	c.A312G	p.E104E	.	.	92	4	74	0	.	70
NKRF	55922	hgsc.bcm.edu	37	X	118725226	118725226	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NKRF	NM_001173487	exon4	c.A207G	p.R69R	.	.	85	3	60	0	.	131
NME1	4830	hgsc.bcm.edu;bcgsc.ca	37	17	49237415	49237415	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NME1	NM_198175	exon4	c.C276T	p.Y92Y	.	.	116	5	77	0	.	251
NME9	347736	hgsc.bcm.edu	37	3	138023727	138023727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_178130	exon10	c.A596G	p.E199G	.	.	65	4	91	0	.	.
NMNAT1	64802	hgsc.bcm.edu	37	1	10042608	10042608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NMNAT1	NM_022787	exon5	c.T689C	p.L230P	.	.	97	4	159	0	.	90
NOS3	4846	hgsc.bcm.edu	37	7	150707785	150707785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NOS3	NM_000603	exon22	c.T2786C	p.L929P	.	.	95	4	133	0	.	1011
NOTCH3	4854	hgsc.bcm.edu	37	19	15297800	15297800	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NOTCH3	NM_000435	exon13	c.1841-1G>T	.	.	.	49	4	51	0	.	855
NOXO1	124056	bcgsc.ca	37	16	2030042	2030042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NOXO1	NM_172168	exon5	c.C557T	p.A186V	.	.	51	4	134	0	.	90
NPC1	4864	bcgsc.ca	37	18	21134854	21134854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NPC1	NM_000271	exon9	c.C1421A	p.P474Q	.	.	164	7	268	1	.	92
NRCAM	4897	hgsc.bcm.edu	37	7	107807398	107807398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NRCAM	NM_001037132	exon27	c.T3434C	p.V1145A	.	.	86	4	111	0	.	156
NRXN2	9379	hgsc.bcm.edu	37	11	64436058	64436058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NRXN2	NM_015080	exon8	c.G1216T	p.G406W	.	.	81	4	123	0	.	232
NSUN7	79730	hgsc.bcm.edu;bcgsc.ca	37	4	40800850	40800850	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NSUN7	NM_024677	exon10	c.A1329G	p.P443P	.	.	94	4	109	0	.	90
NT5C3A	0	hgsc.bcm.edu	37	7	33057200	33057200	+	Missense_Mutation	SNP	T	T	C	rs186325627	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001002010	exon7	c.A559G	p.N187D	.	.	99	4	124	0	T|0.999;G|0.001	.
NTN4	59277	hgsc.bcm.edu	37	12	96180818	96180818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NTN4	NM_021229	exon2	c.A484G	p.T162A	.	.	96	4	169	0	.	92
NTN5	126147	bcgsc.ca	37	19	49174224	49174224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NTN5	NM_145807	exon2	c.T20C	p.L7P	.	.	79	4	112	3	.	136
NUAK2	81788	hgsc.bcm.edu	37	1	205273191	205273191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUAK2	NM_030952	exon7	c.A1274G	p.D425G	.	.	81	4	115	0	.	391
NUDT5	11164	hgsc.bcm.edu	37	10	12215770	12215770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUDT5	NM_014142	exon6	c.G332A	p.R111Q	.	.	125	5	149	0	.	92
NUP153	9972	bcgsc.ca	37	6	17629538	17629538	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUP153	NM_005124	exon18	c.A2892G	p.S964S	.	.	137	5	150	0	.	637
NUP93	9688	hgsc.bcm.edu	37	16	56868679	56868679	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	NUP93	NM_014669	exon16	c.G1771T	p.G591X	.	.	94	5	171	0	.	205
NXPE3	91775	hgsc.bcm.edu	37	3	101520615	101520615	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_145037	exon5	c.C630T	p.F210F	.	.	78	4	87	0	.	.
OAS1	4938	hgsc.bcm.edu	37	12	113354434	113354434	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_001032409	exon4	c.T775C	p.L259L	.	.	94	4	162	0	.	70
OAS1	4938	hgsc.bcm.edu;bcgsc.ca	37	12	113357220	113357220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS1	NM_016816	exon6	c.G1065T	p.E355D	.	.	77	5	93	0	.	70
OAS2	4939	hgsc.bcm.edu;bcgsc.ca	37	12	113443013	113443013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OAS2	NM_002535	exon7	c.C1454T	p.A485V	.	.	65	4	81	0	.	91
OGDH	4967	hgsc.bcm.edu	37	7	44687303	44687303	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OGDH	NM_002541	exon4	c.T462C	p.D154D	.	.	94	4	96	0	.	228
OLFM2	93145	hgsc.bcm.edu;bcgsc.ca	37	19	9968053	9968053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OLFM2	NM_058164	exon4	c.C466A	p.L156I	.	.	62	4	89	0	.	132
OLFML1	283298	bcgsc.ca	37	11	7530965	7530965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OLFML1	NM_198474	exon3	c.T755C	p.L252P	.	.	55	4	97	0	.	70
OPA3	80207	hgsc.bcm.edu	37	19	46032507	46032507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OPA3	NM_001017989	exon2	c.T350C	p.V117A	.	.	100	4	82	0	.	68
OPN5	221391	hgsc.bcm.edu	37	6	47763294	47763294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OPN5	NM_181744	exon4	c.A751G	p.T251A	.	.	92	4	89	0	.	69
OR1M1	125963	hgsc.bcm.edu	37	19	9204494	9204494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR1M1	NM_001004456	exon1	c.A574G	p.T192A	.	.	61	5	65	0	.	71
OR51V1	283111	hgsc.bcm.edu	37	11	5221456	5221456	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR51V1	NM_001004760	exon1	c.G475T	p.G159C	.	.	88	4	89	0	.	69
OR52M1	119772	hgsc.bcm.edu	37	11	4566442	4566442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR52M1	NM_001004137	exon1	c.T22A	p.C8S	.	.	125	6	139	0	.	68
OR56B4	196335	hgsc.bcm.edu	37	11	6129433	6129433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR56B4	NM_001005181	exon1	c.T425C	p.V142A	.	.	97	4	167	0	.	68
OR5AU1	390445	hgsc.bcm.edu;bcgsc.ca	37	14	21623682	21623682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR5AU1	NM_001004731	exon1	c.C503A	p.A168D	.	.	81	4	80	0	.	68
OR5D14	219436	bcgsc.ca	37	11	55563076	55563076	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR5D14	NM_001004735	exon1	c.C45T	p.A15A	.	.	67	4	97	0	.	70
OR5M11	219487	hgsc.bcm.edu	37	11	56310189	56310189	+	Missense_Mutation	SNP	G	G	T	rs200285217	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	OR5M1,brain,glioma,+1	.	NM_001005245	exon1	c.C545A	p.P182Q	.	.	100	4	146	0	.	.
OR6K2	81448	hgsc.bcm.edu	37	1	158670333	158670333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR6K2	NM_001005279	exon1	c.T110C	p.F37S	.	.	87	5	132	0	.	69
OR8J1	219477	hgsc.bcm.edu	37	11	56128618	56128618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OR8J1	NM_001005205	exon1	c.A896G	p.K299R	.	.	86	4	119	0	.	70
OSGEP	55644	hgsc.bcm.edu	37	14	20920172	20920172	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OSGEP	NM_017807	exon3	c.C372A	p.T124T	.	.	132	6	159	0	.	68
OTOF	9381	hgsc.bcm.edu	37	2	26699053	26699053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OTOF	NM_194248	exon23	c.A2809G	p.K937E	.	.	51	4	56	0	.	135
OTOGL	283310	bcgsc.ca	37	12	80660309	80660309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_173591	exon20	c.C2276A	p.P759Q	.	.	305	9	390	2	.	.
OTOL1	131149	hgsc.bcm.edu;bcgsc.ca	37	3	161221321	161221321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080440	exon4	c.G1025T	p.R342L	.	.	106	5	164	0	.	.
OVCH2	341277	hgsc.bcm.edu	37	11	7718054	7718054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	OVCH2	NM_198185	exon10	c.C1099A	p.H367N	.	.	54	4	72	0	.	68
P4HA3	283208	bcgsc.ca	37	11	73979240	73979240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	P4HA3	NM_182904	exon12	c.A1514G	p.D505G	.	.	64	4	57	0	.	69
P4HTM	54681	hgsc.bcm.edu	37	3	49043519	49043519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	P4HTM	NM_177938	exon8	c.A1370G	p.D457G	.	.	91	4	112	0	.	205
PA2G4P4	647033	broad.mit.edu	37	3	156528467	156528467	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	228	6	251	0	.	.
PAK1	5058	broad.mit.edu;bcgsc.ca	37	11	77090985	77090985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAK1	NM_001128620	exon3	c.A245G	p.E82G	.	.	119	6	160	0	.	957
PALB2	79728	hgsc.bcm.edu	37	16	23641766	23641766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PALB2	NM_024675	exon5	c.A1709G	p.E570G	.	.	93	4	189	0	.	1351
PAN2	9924	hgsc.bcm.edu;bcgsc.ca	37	12	56726754	56726754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PAN2	NM_014871	exon2	c.A125G	p.E42G	.	.	61	4	57	0	.	702
PARP11	57097	hgsc.bcm.edu	37	12	3923215	3923215	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP11	NM_020367	exon7	c.G688A	p.V230I	.	.	97	4	134	0	.	523
PARP14	54625	hgsc.bcm.edu	37	3	122437412	122437412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP14	NM_017554	exon14	c.T4414C	p.Y1472H	.	.	86	4	93	0	.	525
PARP14	54625	hgsc.bcm.edu	37	3	122439215	122439215	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PARP14	NM_017554	exon15	c.T4921C	p.S1641P	.	.	95	4	103	0	.	525
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563037	140563037	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHB16	NM_020957	exon1	c.T903A	p.V301V	.	.	39	27	72	0	.	92
PCDHGA8	9708	hgsc.bcm.edu	37	5	140774716	140774716	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_014004	exon1	c.T2336C	p.L779P	.	.	163	7	255	0	.	.
PCDHGC5	56097	hgsc.bcm.edu	37	5	140884982	140884982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCDHGC5	NM_018929	exon3	c.G2542T	p.G848C	.	.	99	4	161	0	.	25
PCK1	5105	hgsc.bcm.edu	37	20	56137172	56137172	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCK1	NM_002591	exon3	c.C270T	p.S90S	.	.	95	5	117	0	.	227
PCM1	5108	hgsc.bcm.edu	37	8	17867212	17867212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon31	c.A5119G	p.K1707E	.	.	67	4	138	0	.	742
PCM1	5108	hgsc.bcm.edu;bcgsc.ca	37	8	17868140	17868140	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCM1	NM_006197	exon32	c.A5183G	p.H1728R	.	.	71	4	156	0	.	742
PCSK2	5126	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	17410143	17410143	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCSK2	NM_002594	exon7	c.A684T	p.G228G	.	.	79	32	81	0	.	157
PCSK7	9159	hgsc.bcm.edu	37	11	117100222	117100222	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCSK7	NM_004716	exon3	c.C339A	p.I113I	.	.	50	4	86	0	.	658
PCYT1B	9468	hgsc.bcm.edu;bcgsc.ca	37	X	24597452	24597452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PCYT1B	NM_001163265	exon6	c.T689C	p.L230P	.	.	122	5	185	0	.	130
PDCD11	22984	hgsc.bcm.edu;bcgsc.ca	37	10	105184772	105184772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDCD11	NM_014976	exon20	c.T2795C	p.V932A	.	.	77	4	91	0	.	275
PDE6A	5145	hgsc.bcm.edu	37	5	149294528	149294528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6A	NM_000440	exon6	c.A976G	p.K326E	.	.	86	4	126	0	.	92
PDE6G	5148	hgsc.bcm.edu;bcgsc.ca	37	17	79618688	79618688	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDE6G	NM_002602	exon3	c.A174G	p.E58E	.	.	87	4	102	0	.	90
PDHA2	5161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96762199	96762199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDHA2	NM_005390	exon1	c.C898A	p.R300S	.	.	71	37	110	0	.	90
PDIK1L	149420	hgsc.bcm.edu	37	1	26448825	26448825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDIK1L	NM_152835	exon3	c.A783G	p.T261T	.	.	92	4	168	0	.	333
PDK1	5163	hgsc.bcm.edu;bcgsc.ca	37	2	173423557	173423557	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PDK1	NM_002610	exon2	c.C318T	p.S106S	.	.	99	5	138	0	.	978
PDS5A	23244	hgsc.bcm.edu;bcgsc.ca	37	4	39850470	39850470	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001100399	exon29	c.3339+1G>A	.	.	.	65	4	80	0	.	.
PEAR1	375033	hgsc.bcm.edu	37	1	156879570	156879570	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEAR1	NM_001080471	exon12	c.C1439G	p.P480R	.	.	82	4	105	0	.	71
PEX5	5830	hgsc.bcm.edu;bcgsc.ca	37	12	7344169	7344169	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PEX5	NM_001131023	exon5	c.T366C	p.P122P	.	.	66	4	82	0	.	91
PGBD5	79605	hgsc.bcm.edu	37	1	230486728	230486728	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PGBD5	NM_001258311	exon3	c.T870C	p.C290C	.	.	93	4	123	0	.	93
PGM2	55276	hgsc.bcm.edu	37	4	37847313	37847313	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PGM2	NM_018290	exon8	c.G969T	p.P323P	.	.	98	4	128	0	.	91
PHLDB2	90102	hgsc.bcm.edu	37	3	111658351	111658351	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHLDB2	NM_001134439	exon7	c.A2160G	p.K720K	.	.	64	4	85	0	.	96
PHYHD1	254295	hgsc.bcm.edu;bcgsc.ca	37	9	131702690	131702690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PHYHD1	NM_001100876	exon10	c.T500C	p.L167P	.	.	87	4	107	0	.	90
PI4K2B	55300	bcgsc.ca	37	4	25260812	25260812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PI4K2B	NM_018323	exon5	c.G910T	p.D304Y	.	.	196	6	245	0	.	229
PIBF1	10464	hgsc.bcm.edu;bcgsc.ca	37	13	73428292	73428292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIBF1	NM_006346	exon10	c.A1321G	p.R441G	.	.	80	4	100	0	.	136
PIEZO1	9780	bcgsc.ca	37	16	88794039	88794039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001142864	exon23	c.C3227A	p.P1076H	.	.	171	6	295	2	.	.
PIGL	9487	hgsc.bcm.edu;bcgsc.ca	37	17	16137378	16137378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIGL	NM_004278	exon2	c.A329G	p.D110G	.	.	54	4	95	0	.	226
PIK3C2A	5286	bcgsc.ca	37	11	17115878	17115878	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3C2A	NM_002645	exon27	c.C4381A	p.R1461R	.	.	188	6	265	0	.	1310
PIK3C2A	5286	bcgsc.ca	37	11	17118664	17118664	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3C2A	NM_002645	exon26	c.T4266C	p.G1422G	.	.	125	5	128	1	.	1310
PIK3C2B	5287	hgsc.bcm.edu	37	1	204403607	204403607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3C2B	NM_002646	exon25	c.C3646A	p.R1216S	.	.	99	4	135	0	.	1310
PIK3C2G	5288	bcgsc.ca	37	12	18800900	18800900	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3C2G	NM_004570	exon32	c.C4276A	p.R1426R	.	.	137	5	191	0	.	1312
PIK3CB	5291	hgsc.bcm.edu	37	3	138376626	138376626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PIK3CB	NM_006219	exon20	c.G2848A	p.G950S	.	.	97	4	134	0	.	1311
PITPNM1	9600	hgsc.bcm.edu	37	11	67270152	67270152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PITPNM1	NM_001130848	exon3	c.G116A	p.G39D	.	.	91	4	118	0	.	227
PKDREJ	10343	hgsc.bcm.edu	37	22	46657241	46657241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKDREJ	NM_006071	exon1	c.A1979G	p.Q660R	.	.	70	4	74	0	.	156
PKP2	5318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33031343	33031343	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PKP2	NM_004572	exon3	c.G471A	p.E157E	.	.	110	15	138	0	.	92
PLD2	5338	hgsc.bcm.edu;bcgsc.ca	37	17	4712848	4712848	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLD2	NM_002663	exon7	c.614+2T>C	.	.	.	110	5	114	0	.	291
PLEC	5339	hgsc.bcm.edu	37	8	144990726	144990726	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEC	NM_201380	exon32	c.C13674A	p.T4558T	.	.	80	4	69	0	.	141
PLEC	5339	hgsc.bcm.edu	37	8	144991010	144991010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEC	NM_201380	exon32	c.G13390T	p.G4464C	.	.	138	7	155	0	.	141
PLEKHG4	25894	ucsc.edu	37	16	67322081	67322081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEKHG4	NM_001129728	exon20	c.C3232T	p.R1078W	.	.	47	4	75	0	.	92
PLEKHH1	57475	hgsc.bcm.edu	37	14	68029351	68029351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLEKHH1	NM_020715	exon7	c.C1003G	p.P335A	.	.	97	4	139	0	.	22
PLIN1	5346	hgsc.bcm.edu	37	15	90210167	90210167	+	Silent	SNP	C	C	T	rs2304797		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLIN1	NM_001145311	exon8	c.G1209A	p.P403P	.	.	56	4	67	0	G|0.999;A|0.001	91
PLIN5	440503	hgsc.bcm.edu	37	19	4531823	4531823	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLIN5	NM_001013706	exon3	c.G72A	p.Q24Q	.	.	80	5	88	0	.	22
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	57753099	57753099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK2	NM_006622	exon7	c.C917A	p.P306H	.	.	20	4	46	0	.	409
PLK3	1263	bcgsc.ca	37	1	45270441	45270441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK3	NM_004073	exon13	c.A1625G	p.H542R	.	.	71	4	121	1	.	333
PLK3	1263	hgsc.bcm.edu	37	1	45266606	45266606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK3	NM_004073	exon2	c.A305G	p.H102R	.	.	74	4	155	0	.	333
PLK4	10733	hgsc.bcm.edu;bcgsc.ca	37	4	128803010	128803010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLK4	NM_001190799	exon2	c.G55T	p.G19C	.	.	98	4	181	0	.	333
PLOD2	5352	broad.mit.edu;bcgsc.ca	37	3	145788889	145788889	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLOD2	NM_182943	exon19	c.T2061C	p.H687H	.	.	166	6	150	1	.	92
PLS3	5358	bcgsc.ca	37	X	114877669	114877669	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLS3	NM_005032	exon10	c.A1032G	p.A344A	.	.	168	5	154	0	.	193
PLXNA4	91584	broad.mit.edu	37	7	131878912	131878912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PLXNA4	NM_020911	exon14	c.A2765G	p.K922R	.	.	143	4	175	1	.	91
PMEPA1	56937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	56228121	56228121	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PMEPA1	NM_020182	exon3	c.G286T	p.E96X	.	.	109	35	83	0	.	227
PNISR	25957	hgsc.bcm.edu	37	6	99856127	99856127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PNISR	NM_015491	exon6	c.C694A	p.L232I	.	.	121	5	173	0	.	22
POLB	5423	bcgsc.ca	37	8	42218885	42218885	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLB	NM_002690	exon10	c.621+2T>C	.	.	.	180	6	252	1	.	1084
POLE	5426	hgsc.bcm.edu;bcgsc.ca	37	12	133256186	133256186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLE	NM_006231	exon6	c.A475G	p.T159A	.	.	78	4	110	0	.	233
POLG	5428	bcgsc.ca	37	15	89864088	89864088	+	Missense_Mutation	SNP	G	G	T	rs201477273	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLG	NM_002693	exon18	c.C2890A	p.R964S	.	.	67	6	75	1	G|0.998;A|0.002	228
POLR2A	5430	hgsc.bcm.edu	37	17	7404157	7404157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLR2A	NM_000937	exon11	c.G1871T	p.G624V	.	.	78	4	172	0	.	91
POLR3C	10623	hgsc.bcm.edu	37	1	145598543	145598543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POLR3C	NM_006468	exon8	c.A950G	p.D317G	.	.	69	4	90	0	.	91
POMT2	29954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746807	77746807	+	Splice_Site	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon17	c.1654-1G>T	.	.	.	159	81	252	2	.	91
POMT2	29954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	77746806	77746806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	POMT2	NM_013382	exon16	c.G1654T	p.G552W	.	.	166	83	256	0	.	91
PPEF1	5475	hgsc.bcm.edu;bcgsc.ca	37	X	18797263	18797263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPEF1	NM_152226	exon10	c.G694T	p.G232W	.	.	91	4	84	0	.	226
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7670813	7670813	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPFIBP2	NM_003621	exon21	c.C2049G	p.I683M	.	.	199	67	303	0	.	273
PPIE	10450	hgsc.bcm.edu;bcgsc.ca	37	1	40218983	40218983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIE	NM_006112	exon10	c.C862T	p.P288S	.	.	43	4	128	0	.	90
PPIL1	51645	hgsc.bcm.edu	37	6	36842499	36842499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPIL1	NM_016059	exon1	c.A50G	p.E17G	.	.	120	5	158	0	.	91
PPME1	51400	bcgsc.ca	37	11	73957096	73957096	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001271593	exon10	c.T852C	p.T284T	.	.	86	4	133	0	.	.
PPP1R10	5514	hgsc.bcm.edu	37	6	30571268	30571268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R10	NM_002714	exon16	c.A1748G	p.E583G	.	.	72	4	112	0	.	660
PPP1R12C	54776	bcgsc.ca	37	19	55606903	55606903	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R12C	NM_017607	exon10	c.T1296C	p.G432G	.	.	48	4	57	0	.	227
PPP1R3C	5507	hgsc.bcm.edu	37	10	93390552	93390552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R3C	NM_005398	exon2	c.G86T	p.C29F	.	.	79	4	96	0	.	658
PPP1R3F	89801	hgsc.bcm.edu	37	X	49143280	49143280	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP1R3F	NM_033215	exon4	c.T2128C	p.L710L	.	.	81	4	140	0	.	229
PPP2R4	5524	bcgsc.ca	37	9	131898767	131898767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP2R4	NM_178001	exon8	c.G683T	p.R228L	.	.	83	4	139	1	.	660
PPP4R1	9989	ucsc.edu;bcgsc.ca	37	18	9595031	9595031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PPP4R1	NM_001042388	exon3	c.A173G	p.E58G	.	.	48	4	62	0	.	227
PRKAR1B	5575	hgsc.bcm.edu	37	7	635799	635799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRKAR1B	NM_001164760	exon7	c.A692G	p.Y231C	.	.	121	5	176	0	.	68
PRMT1	3276	hgsc.bcm.edu	37	19	50185170	50185170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRMT1	NM_001536	exon4	c.A196G	p.M66V	.	.	85	4	94	0	.	91
PRPF19	27339	hgsc.bcm.edu	37	11	60670241	60670241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRPF19	NM_014502	exon4	c.T359C	p.L120P	.	.	97	3	121	0	.	91
PRR5-ARHGAP8	553158	hgsc.bcm.edu	37	22	45218348	45218348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRR5-ARHGAP8	NM_181334	exon9	c.C850T	p.R284W	.	.	112	5	126	0	.	161
PRRC2B	84726	hgsc.bcm.edu	37	9	134353913	134353913	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRC2B	NM_013318	exon17	c.T4665C	p.G1555G	.	.	96	4	154	0	.	24
PRRG1	5638	hgsc.bcm.edu;bcgsc.ca	37	X	37312753	37312753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRRG1	NM_001173490	exon4	c.T536C	p.V179A	.	.	55	4	66	0	.	194
PRUNE2	158471	bcgsc.ca	37	9	79251411	79251411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PRUNE2	NM_015225	exon15	c.T9026C	p.L3009P	.	.	170	6	214	0	.	157
PSKH1	5681	hgsc.bcm.edu	37	16	67942888	67942888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSKH1	NM_006742	exon2	c.G236T	p.R79L	.	.	89	4	163	0	.	333
PSMB11	122706	hgsc.bcm.edu	37	14	23511752	23511752	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001099780	exon1	c.G318T	p.R106R	.	.	78	4	102	0	.	.
PSMC4	5704	hgsc.bcm.edu;bcgsc.ca	37	19	40480515	40480515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PSMC4	NM_006503	exon5	c.T554C	p.L185P	.	.	62	4	94	0	.	91
PTP4A3	11156	bcgsc.ca	37	8	142441091	142441091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTP4A3	NM_032611	exon5	c.A469G	p.R157G	.	.	152	6	112	0	.	226
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18754887	18754887	+	Silent	SNP	G	G	A	rs144666949		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPN5	NM_032781	exon11	c.C1113T	p.A371A	.	.	86	27	95	0	G|1.000;A|0.000	229
PTPRK	5796	hgsc.bcm.edu	37	6	128643368	128643368	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRK	NM_001135648	exon3	c.A311T	p.H104L	.	.	95	4	134	0	.	231
PTPRQ	374462	bcgsc.ca	37	12	81043448	81043448	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001145026	exon34	c.G5508T	p.S1836S	.	.	190	6	177	0	.	.
PTPRU	10076	hgsc.bcm.edu	37	1	29638034	29638034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRU	NM_005704	exon21	c.T2954C	p.V985A	.	.	89	4	178	0	.	291
PTPRZ1	5803	hgsc.bcm.edu	37	7	121679517	121679517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PTPRZ1	NM_002851	exon20	c.G5512A	p.D1838N	.	.	53	4	39	0	.	699
PUS3	83480	hgsc.bcm.edu	37	11	125765155	125765155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	PUS3,NS,carcinoma,-1	PUS3	NM_031307	exon3	c.T908C	p.L303P	.	.	66	3	94	0	.	91
PWP2	5822	bcgsc.ca	37	21	45534116	45534116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PWP2	NM_005049	exon4	c.T283C	p.F95L	.	.	80	6	120	1	.	91
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	52321594	52321594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXDNL	NM_144651	exon17	c.C2590T	p.R864C	.	.	100	6	87	0	.	70
PXN	5829	hgsc.bcm.edu;bcgsc.ca	37	12	120651722	120651722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PXN	NM_001243756	exon10	c.G1474T	p.G492C	.	.	71	4	103	0	.	660
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9318700	9318700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	PZP	NM_002864	exon18	c.A2206G	p.T736A	.	.	74	4	143	0	.	157
R3HCC1L	27291	bcgsc.ca	37	10	99969239	99969239	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001256620	exon4	c.A1368G	p.T456T	.	.	160	6	165	0	.	.
RAB35	11021	hgsc.bcm.edu	37	12	120536685	120536685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAB35	NM_006861	exon5	c.A407G	p.Y136C	.	.	94	4	144	0	.	227
RABGGTB	5876	hgsc.bcm.edu	37	1	76253187	76253187	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RABGGTB	NM_004582	exon2	c.T9C	p.T3T	.	.	122	5	218	0	.	227
RAD50	10111	hgsc.bcm.edu	37	5	131911482	131911482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAD50	NM_005732	exon3	c.C227T	p.T76I	.	.	92	4	151	0	.	229
RAD51D	5892	hgsc.bcm.edu	37	17	33443890	33443890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAD51D	NM_001142571	exon3	c.T311C	p.V104A	.	.	114	5	103	0	.	228
RAF1	5894	hgsc.bcm.edu	37	3	12653516	12653516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAF1	NM_002880	exon3	c.G253T	p.A85S	.	.	86	4	90	0	.	1404
RAI14	26064	hgsc.bcm.edu	37	5	34796132	34796132	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RAI14	NM_001145525	exon6	c.G265T	p.G89X	.	.	119	5	187	0	.	91
RALBP1	10928	bcgsc.ca;mdanderson.org	37	18	9535701	9535701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RALBP1	NM_006788	exon10	c.T1734C	p.H578H	.	.	18	3	29	0	.	522
RARS2	57038	hgsc.bcm.edu	37	6	88229903	88229903	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RARS2	NM_020320	exon13	c.A1107G	p.A369A	.	.	85	4	179	0	.	92
RBBP8	5932	bcgsc.ca	37	18	20516826	20516826	+	Silent	SNP	G	G	T	rs141481899	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon2	c.G12T	p.S4S	.	.	69	5	123	1	G|0.999;A|0.001	659
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20572755	20572755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.C965A	p.P322H	.	.	81	4	130	0	.	659
RBBP8	5932	hgsc.bcm.edu;bcgsc.ca	37	18	20573367	20573367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBBP8	NM_203292	exon11	c.A1577G	p.K526R	.	.	61	4	123	0	.	659
RBFOX2	23543	hgsc.bcm.edu	37	22	36152191	36152191	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBFOX2	NM_001082578	exon11	c.T1110C	p.G370G	.	.	88	4	88	0	.	90
RBM10	8241	bcgsc.ca	37	X	47041171	47041171	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.T1794C	p.A598A	.	.	31	26	109	0	.	626
RBM10	8241	hgsc.bcm.edu	37	X	47041175	47041186	+	In_Frame_Del	DEL	CTCAAATCTGAG	CTCAAATCTGAG	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	CTCAAATCTGAG	CTCAAATCTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1798_1809del	p.600_603del	.	.	31	0	109	0	.	626
RBM10	8241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	47041174	47041185	+	In_Frame_Del	DEL	GCTCAAATCTGA	GCTCAAATCTGA	-	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	GCTCAAATCTGA	GCTCAAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM10	NM_001204468	exon15	c.1797_1808del	p.599_603del	.	.	31	18	111	0	.	626
RBM12	10137	hgsc.bcm.edu	37	20	34240516	34240516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM12	NM_001198840	exon2	c.C2729T	p.A910V	.	.	145	6	131	0	.	93
RBM17	84991	hgsc.bcm.edu	37	10	6143232	6143232	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RBM17	NM_032905	exon3	c.124-2A>G	.	.	.	76	4	92	0	.	90
RCN2	5955	hgsc.bcm.edu;bcgsc.ca	37	15	77241444	77241444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCN2	NM_001271837	exon8	c.G889T	p.G297C	.	.	74	5	62	0	.	90
RCOR2	283248	hgsc.bcm.edu;bcgsc.ca	37	11	63680410	63680410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.A901G	p.M301V	.	.	52	4	89	0	.	92
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63680389	63680389	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RCOR2	NM_173587	exon9	c.C922T	p.L308L	.	.	54	14	101	0	.	92
RDH16	8608	hgsc.bcm.edu	37	12	57351019	57351019	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RDH16	NM_003708	exon1	c.G228A	p.R76R	.	.	114	5	188	0	.	90
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145740718	145740718	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RECQL4	NM_004260	exon7	c.A1382T	p.Q461L	.	.	166	10	154	0	.	1083
REV3L	5980	hgsc.bcm.edu;bcgsc.ca	37	6	111686477	111686477	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	REV3L	NM_002912	exon15	c.A6744G	p.T2248T	.	.	89	4	162	0	.	294
RFWD3	55159	hgsc.bcm.edu	37	16	74694849	74694849	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RFWD3	NM_018124	exon2	c.C499T	p.Q167X	.	.	97	4	154	0	.	522
RFX4	5992	hgsc.bcm.edu	37	12	107109249	107109249	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RFX4	NM_001206691	exon11	c.G1092A	p.L364L	.	.	96	4	186	0	.	91
RGP1	9827	hgsc.bcm.edu	37	9	35752822	35752822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RGP1	NM_001080496	exon9	c.T1127C	p.L376P	.	.	91	5	126	0	.	23
RICTOR	253260	hgsc.bcm.edu	37	5	38952348	38952348	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RICTOR	NM_152756	exon30	c.C3077A	p.S1026X	.	.	91	4	174	0	.	849
RIMBP3C	150221	broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21742770	21742770	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001128633	exon1	c.C4623T	p.A1541A	.	.	1272	258	1272	0	.	.
RLF	6018	hgsc.bcm.edu	37	1	40703878	40703878	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RLF	NM_012421	exon8	c.G3504C	p.R1168R	.	.	67	3	94	0	.	93
RNASE10	338879	hgsc.bcm.edu	37	14	20978863	20978863	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNASE10	NM_001012975	exon1	c.C233A	p.P78H	.	.	82	4	72	0	.	90
RNF139	11236	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	125487462	125487462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF139	NM_007218	exon1	c.T112C	p.F38L	.	.	58	6	66	0	.	226
RNF148	378925	bcgsc.ca	37	7	122342535	122342535	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF148	NM_198085	exon1	c.C270A	p.T90T	.	.	136	5	151	0	.	204
RNF169	254225	hgsc.bcm.edu	37	11	74546594	74546594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF169	NM_001098638	exon6	c.A946G	p.T316A	.	.	87	4	98	0	.	69
RNF208	727800	hgsc.bcm.edu	37	9	140115610	140115610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_031297	exon1	c.T55C	p.S19P	.	.	104	5	146	0	.	.
RNF213	57674	hgsc.bcm.edu	37	17	78335538	78335538	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNF213	NM_001256071	exon39	c.G11205A	p.L3735L	.	.	70	4	54	0	.	577
RNH1	6050	bcgsc.ca	37	11	498120	498120	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RNH1	NM_203383	exon9	c.A978G	p.T326T	.	.	94	5	137	0	.	90
ROCK1P1	727758	broad.mit.edu;bcgsc.ca	37	18	117155	117155	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	334	9	487	0	.	.
ROCK2	9475	bcgsc.ca	37	2	11361482	11361482	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ROCK2	NM_004850	exon9	c.G1101T	p.T367T	.	.	129	5	164	2	.	546
RPGRIP1L	23322	hgsc.bcm.edu	37	16	53636067	53636067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPGRIP1L	NM_015272	exon27	c.G3869A	p.G1290D	.	.	95	4	154	0	.	91
RPIA	22934	hgsc.bcm.edu;bcgsc.ca	37	2	89036184	89036184	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPIA	NM_144563	exon7	c.C729T	p.V243V	.	.	70	4	94	0	.	91
RPS6KA2	6196	hgsc.bcm.edu	37	6	166912091	166912091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RPS6KA2	NM_001006932	exon9	c.T676C	p.S226P	.	.	85	4	144	0	.	1405
RRBP1	6238	bcgsc.ca	37	20	17614246	17614246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRBP1	NM_004587	exon8	c.G1170T	p.E390D	.	.	147	5	146	1	.	92
RRBP1	6238	hgsc.bcm.edu;bcgsc.ca	37	20	17596120	17596120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRBP1	NM_004587	exon23	c.G2707T	p.G903C	.	.	55	4	76	0	.	92
RRN3	54700	hgsc.bcm.edu;bcgsc.ca	37	16	15168676	15168676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RRN3	NM_018427	exon11	c.G901A	p.E301K	.	.	71	4	119	0	.	91
RSPH4A	345895	hgsc.bcm.edu	37	6	116943931	116943931	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RSPH4A	NM_001161664	exon2	c.A687G	p.L229L	.	.	97	4	113	0	.	90
RUNX1	861	broad.mit.edu	37	21	36265220	36265220	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RUNX1	NM_001754	exon4	c.97+2T>C	.	.	.	562	10	596	0	.	5146
RXRG	6258	hgsc.bcm.edu	37	1	165398198	165398198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RXRG	NM_006917	exon2	c.C55T	p.P19S	.	.	93	4	140	0	.	186
RYR1	6261	bcgsc.ca	37	19	38996532	38996532	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR1	NM_001042723	exon54	c.T8487C	p.G2829G	.	.	243	9	353	2	.	100
RYR1	6261	hgsc.bcm.edu	37	19	39016021	39016021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR1	NM_000540	exon71	c.G10505T	p.R3502L	.	.	98	4	102	0	.	100
RYR2	6262	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	237947885	237947885	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	RYR2	NM_001035	exon90	c.C12873T	p.F4291F	.	.	42	4	69	0	.	158
SACS	26278	bcgsc.ca	37	13	23939311	23939311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SACS	NM_014363	exon6	c.T451C	p.Y151H	.	.	229	6	322	0	.	298
SACS	26278	hgsc.bcm.edu	37	13	23910918	23910918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SACS	NM_014363	exon10	c.A7097G	p.E2366G	.	.	98	4	131	0	.	298
SALL1	6299	hgsc.bcm.edu;bcgsc.ca	37	16	51175284	51175284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SALL1	NM_002968	exon2	c.C849A	p.S283S	.	.	69	4	110	0	.	98
SATB1	6304	hgsc.bcm.edu	37	3	18458441	18458441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SATB1	NM_002971	exon3	c.C341T	p.A114V	.	.	96	4	114	0	.	228
SCARA3	51435	hgsc.bcm.edu	37	8	27509080	27509080	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCARA3	NM_182826	exon3	c.G162T	p.S54S	.	.	79	4	251	0	.	228
SCD5	79966	hgsc.bcm.edu	37	4	83601977	83601977	+	Missense_Mutation	SNP	A	A	G	rs138660783	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCD5	NM_024906	exon3	c.T452C	p.F151S	.	.	81	4	118	0	A|0.999;C|0.001	91
SCIN	85477	hgsc.bcm.edu	37	7	12662452	12662452	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCIN	NM_001112706	exon5	c.A693G	p.P231P	.	.	89	4	83	0	.	24
SCNN1G	6340	bcgsc.ca	37	16	23223397	23223397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCNN1G	NM_001039	exon8	c.T1219A	p.C407S	.	.	73	4	183	1	.	158
SCRIB	23513	hgsc.bcm.edu	37	8	144891811	144891811	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCRIB	NM_015356	exon14	c.C1608G	p.P536P	.	.	93	4	90	0	.	228
SCUBE1	80274	hgsc.bcm.edu	37	22	43610121	43610121	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCUBE1	NM_173050	exon16	c.T2028C	p.G676G	.	.	107	5	123	0	.	93
SCUBE2	57758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9069079	9069079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SCUBE2	NM_020974	exon16	c.G1826T	p.R609L	.	.	174	17	228	0	.	92
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	71335078	71335078	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDK2	NM_001144952	exon45	c.G6167A	p.G2056E	.	.	537	279	565	0	.	24
SDR9C7	121214	hgsc.bcm.edu	37	12	57327864	57327864	+	Missense_Mutation	SNP	C	C	T	rs147708476		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SDR9C7	NM_148897	exon1	c.G182A	p.G61E	.	.	74	4	87	0	C|1.000;T|0.000	90
SEC14L6	730005	hgsc.bcm.edu	37	22	30928561	30928561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001193336	exon5	c.T374C	p.F125S	.	.	77	4	78	0	.	.
SEC14L6	730005	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	30921660	30921660	+	Silent	SNP	G	G	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001193336	exon10	c.C849G	p.S283S	.	.	127	19	110	0	.	.
SEC24A	10802	hgsc.bcm.edu	37	5	134022523	134022523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEC24A	NM_001252231	exon10	c.T1535C	p.V512A	.	.	105	5	202	0	.	68
SEMA3D	223117	hgsc.bcm.edu	37	7	84666257	84666257	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEMA3D	NM_152754	exon10	c.A1139G	p.D380G	.	.	120	5	157	0	.	138
SERPINB2	5055	hgsc.bcm.edu	37	18	61569075	61569075	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SERPINB2	NM_002575	exon6	c.G637T	p.E213X	.	.	91	4	101	0	.	226
SERPINI2	5276	ucsc.edu;bcgsc.ca	37	3	167164212	167164212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SERPINI2	NM_001012303	exon9	c.C1139A	p.P380Q	.	.	42	4	76	0	.	228
SETX	23064	bcgsc.ca	37	9	135176029	135176029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SETX	NM_015046	exon12	c.C5536T	p.R1846C	.	.	186	6	247	0	.	93
SEZ6L2	26470	hgsc.bcm.edu;bcgsc.ca	37	16	29891258	29891258	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SEZ6L2	NM_001243332	exon9	c.T1500C	p.P500P	.	.	70	4	95	0	.	92
SFXN2	118980	hgsc.bcm.edu;bcgsc.ca	37	10	104486433	104486433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SFXN2	NM_178858	exon2	c.C40A	p.R14S	.	.	64	4	99	0	.	90
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52890227	52890227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCB	NM_000232	exon6	c.T853C	p.Y285H	.	.	133	17	183	0	.	90
SGCG	6445	hgsc.bcm.edu	37	13	23898576	23898576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGCG	NM_000231	exon8	c.T772C	p.S258P	.	.	79	4	144	0	.	90
SGOL2	151246	bcgsc.ca	37	2	201436184	201436184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SGOL2	NM_001160046	exon7	c.T1115C	p.V372A	.	.	191	5	222	0	.	94
SH2D7	646892	hgsc.bcm.edu;bcgsc.ca	37	15	78386536	78386536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001101404	exon2	c.T259C	p.S87P	.	.	63	4	80	0	.	.
SH3RF3	344558	hgsc.bcm.edu	37	2	110015186	110015186	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SH3RF3	NM_001099289	exon4	c.G1086T	p.A362A	.	.	78	4	104	0	.	24
SHKBP1	92799	hgsc.bcm.edu	37	19	41094616	41094616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHKBP1	NM_138392	exon14	c.G1423T	p.A475S	.	.	88	5	123	0	.	92
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57625269	57625269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHMT2	NM_005412	exon3	c.C237A	p.F79L	.	.	148	80	179	0	.	91
SHPRH	257218	hgsc.bcm.edu	37	6	146243830	146243830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SHPRH	NM_173082	exon19	c.C3700A	p.H1234N	.	.	82	4	94	0	.	92
SIGLEC10	89790	hgsc.bcm.edu	37	19	51919307	51919307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIGLEC10	NM_001171157	exon5	c.T869C	p.L290P	.	.	82	4	82	0	.	91
SIGLEC7	27036	hgsc.bcm.edu	37	19	51648215	51648215	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIGLEC7	NM_014385	exon3	c.A759G	p.T253T	.	.	88	4	73	0	.	153
SIK1	150094	hgsc.bcm.edu	37	21	44839238	44839238	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIK1	NM_173354	exon10	c.C1240T	p.Q414X	.	.	100	4	125	0	.	346
SIN3B	23309	hgsc.bcm.edu	37	19	16977294	16977294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIN3B	NM_015260	exon13	c.A1829G	p.N610S	.	.	92	4	74	0	.	228
SIPA1L1	26037	hgsc.bcm.edu	37	14	72138015	72138015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SIPA1L1	NM_015556	exon8	c.A2435G	p.Y812C	.	.	149	6	145	0	.	156
SLC14A1	6563	hgsc.bcm.edu	37	18	43329905	43329905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A1	NM_001146037	exon9	c.A1327G	p.S443G	.	.	93	4	143	0	.	515
SLC14A2	8170	hgsc.bcm.edu;bcgsc.ca	37	18	43204717	43204717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC14A2	NM_001242692	exon3	c.T88C	p.W30R	.	.	68	5	91	0	.	93
SLC17A9	63910	hgsc.bcm.edu	37	20	61597040	61597040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC17A9	NM_022082	exon10	c.G1024T	p.A342S	.	.	97	4	98	0	.	92
SLC18A2	6571	hgsc.bcm.edu	37	10	119003656	119003656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC18A2	NM_003054	exon3	c.A296G	p.H99R	.	.	83	4	92	0	.	90
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64323631	64323631	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A11	NM_018484	exon1	c.C160T	p.L54L	.	.	90	34	177	0	.	91
SLC22A17	51310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23816000	23816000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC22A17	NM_020372	exon9	c.C1474A	p.L492M	.	.	39	13	38	0	.	226
SLC25A1	6576	hgsc.bcm.edu	37	22	19164138	19164138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC25A1	NM_001256534	exon6	c.A721G	p.S241G	.	.	99	4	118	0	.	90
SLC27A5	10998	hgsc.bcm.edu	37	19	59011753	59011753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC27A5	NM_012254	exon6	c.C1421T	p.A474V	.	.	72	4	83	0	.	90
SLC2A11	66035	hgsc.bcm.edu	37	22	24217341	24217341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC2A11	NM_030807	exon5	c.T340C	p.S114P	.	.	77	4	76	0	.	91
SLC36A2	153201	hgsc.bcm.edu	37	5	150712834	150712834	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC36A2	NM_181776	exon7	c.A794T	p.Y265F	.	.	123	7	185	0	.	91
SLC39A1	27173	hgsc.bcm.edu	37	1	153935029	153935029	+	Missense_Mutation	SNP	G	G	A	rs3211049	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC39A1	NM_001271957	exon2	c.C163T	p.P55S	.	.	119	4	179	0	.	90
SLC4A4	8671	hgsc.bcm.edu	37	4	72412214	72412214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC4A4	NM_001098484	exon19	c.C2590A	p.P864T	.	.	80	4	67	0	.	95
SLC4A8	9498	hgsc.bcm.edu	37	12	51844748	51844748	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC4A8	NM_001039960	exon3	c.A219G	p.R73R	.	.	109	6	165	0	.	95
SLC51A	200931	hgsc.bcm.edu;bcgsc.ca	37	3	195955119	195955119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152672	exon5	c.T496C	p.C166R	.	.	59	4	82	0	.	.
SLC5A5	6528	hgsc.bcm.edu	37	19	17994695	17994695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	SLC5A5,brain,glioma,-2	SLC5A5	NM_000453	exon12	c.T1366C	p.S456P	.	.	48	2	38	0	.	93
SLC5A5	6528	hgsc.bcm.edu;bcgsc.ca	37	19	17988801	17988801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC5A5	NM_000453	exon7	c.T868C	p.F290L	.	.	75	4	82	0	.	93
SLC6A2	6530	hgsc.bcm.edu	37	16	55690842	55690842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A2	NM_001172501	exon2	c.T236C	p.V79A	.	.	87	5	178	0	.	526
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468248	44468248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC6A9	NM_201649	exon7	c.A1013G	p.E338G	.	.	73	4	140	0	.	90
SLC7A2	6542	hgsc.bcm.edu	37	8	17422622	17422622	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC7A2	NM_001164771	exon12	c.T2064C	p.P688P	.	.	87	4	169	0	.	93
SLC7A3	84889	hgsc.bcm.edu	37	X	70149744	70149744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC7A3	NM_032803	exon2	c.T104C	p.L35P	.	.	96	4	89	0	.	132
SLC9A3R2	9351	hgsc.bcm.edu	37	16	2079608	2079608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A3R2	NM_004785	exon2	c.A239G	p.E80G	.	.	108	5	191	0	.	23
SLC9A6	10479	hgsc.bcm.edu;bcgsc.ca	37	X	135067790	135067790	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLC9A6	NM_006359	exon1	c.G129A	p.S43S	.	.	66	4	63	0	.	131
SLCO2B1	11309	bcgsc.ca	37	11	74880363	74880363	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLCO2B1	NM_007256	exon5	c.G594T	p.L198L	.	.	67	4	124	0	.	154
SLK	9748	hgsc.bcm.edu	37	10	105762224	105762224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLK	NM_014720	exon9	c.C1288T	p.L430F	.	.	97	4	104	0	.	549
SLPI	6590	hgsc.bcm.edu	37	20	43882355	43882355	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SLPI	NM_003064	exon2	c.T105C	p.C35C	.	.	136	6	102	0	.	515
SMAP2	64744	hgsc.bcm.edu;bcgsc.ca	37	1	40881972	40881972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMAP2	NM_022733	exon8	c.T806C	p.L269P	.	.	65	4	106	0	.	68
SMARCD2	6603	hgsc.bcm.edu	37	17	61914319	61914319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMARCD2	NM_001098426	exon4	c.G530A	p.R177Q	.	.	92	4	103	0	.	227
SMC1A	8243	hgsc.bcm.edu	37	X	53432729	53432729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMC1A	NM_006306	exon10	c.A1705G	p.T569A	.	.	98	4	110	0	.	232
SMCHD1	23347	hgsc.bcm.edu	37	18	2688459	2688459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon6	c.G706T	p.G236C	.	.	73	4	145	0	.	46
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2694533	2694533	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMCHD1	NM_015295	exon8	c.T882C	p.D294D	.	.	89	4	133	0	.	46
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	18846414	18846414	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG1	NM_015092	exon49	c.G8130A	p.L2710L	.	.	203	116	243	0	.	1160
SMG6	23293	hgsc.bcm.edu;bcgsc.ca	37	17	1964865	1964865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMG6	NM_017575	exon19	c.A4181G	p.N1394S	.	.	79	4	100	0	.	228
SMPX	23676	hgsc.bcm.edu;bcgsc.ca	37	X	21761892	21761892	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMPX	NM_014332	exon3	c.A108G	p.K36K	.	.	68	4	60	0	.	130
SMS	6611	hgsc.bcm.edu	37	X	22010832	22010832	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMS	NM_004595	exon10	c.1061+2T>C	.	.	.	88	4	135	0	.	131
SMURF1	57154	hgsc.bcm.edu	37	7	98628253	98628253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SMURF1	NM_020429	exon19	c.A2228G	p.K743R	.	.	74	5	96	0	.	661
SNCAIP	9627	hgsc.bcm.edu;bcgsc.ca	37	5	121739502	121739502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNCAIP	NM_001242935	exon3	c.A26G	p.H9R	.	.	95	6	142	0	.	92
SNED1	25992	bcgsc.ca	37	2	242026823	242026823	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNED1	NM_001080437	exon30	c.C4138A	p.R1380R	.	.	252	8	355	0	.	72
SNED1	25992	hgsc.bcm.edu	37	2	241979607	241979607	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNED1	NM_001080437	exon7	c.1159+2T>A	.	.	.	82	5	110	0	.	72
SNTG2	54221	hgsc.bcm.edu	37	2	1168816	1168816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SNTG2	NM_018968	exon8	c.T538C	p.S180P	.	.	121	5	128	0	.	136
SOGA3	387104	hgsc.bcm.edu	37	6	127837004	127837004	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001012279	exon2	c.A756G	p.E252E	.	.	82	4	139	0	.	.
SORL1	6653	hgsc.bcm.edu;bcgsc.ca	37	11	121478830	121478830	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SORL1	NM_003105	exon38	c.T5184C	p.S1728S	.	.	76	4	75	0	.	228
SOX13	9580	hgsc.bcm.edu;bcgsc.ca	37	1	204083543	204083543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SOX13	NM_005686	exon3	c.A314G	p.N105S	.	.	92	4	166	0	.	514
SOX6	55553	bcgsc.ca	37	11	16340070	16340070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SOX6	NM_001145819	exon3	c.C406A	p.R136S	.	.	136	5	169	1	.	93
SPARC	6678	hgsc.bcm.edu;bcgsc.ca	37	5	151049257	151049257	+	Missense_Mutation	SNP	T	T	C	rs200223394		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPARC	NM_003118	exon6	c.A419G	p.K140R	.	.	123	5	163	0	T|0.999;C|0.001	514
SPATA31D1	389763	hgsc.bcm.edu	37	9	84608910	84608910	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001001670	exon4	c.A3525G	p.K1175K	.	.	82	4	125	0	.	.
SPEN	23013	bcgsc.ca	37	1	16260433	16260433	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPEN	NM_015001	exon11	c.T7698C	p.P2566P	.	.	29	4	78	0	.	298
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16261624	16261624	+	Silent	SNP	C	C	A	rs151181793	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPEN	NM_015001	exon11	c.C8889A	p.P2963P	.	.	80	4	196	0	C|0.998;T|0.002	298
SPG21	51324	hgsc.bcm.edu;bcgsc.ca	37	15	65261687	65261687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPG21	NM_001127889	exon7	c.G574T	p.G192C	.	.	94	4	88	0	.	90
SPRYD3	84926	hgsc.bcm.edu	37	12	53467190	53467190	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPRYD3	NM_032840	exon6	c.G573A	p.L191L	.	.	80	4	97	0	.	90
SPTY2D1	144108	hgsc.bcm.edu	37	11	18655797	18655797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPTY2D1	NM_194285	exon1	c.T8C	p.F3S	.	.	80	4	95	0	.	90
SPZ1	84654	hgsc.bcm.edu	37	5	79616053	79616053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SPZ1	NM_032567	exon1	c.T19C	p.S7P	.	.	82	4	144	0	.	91
SSPO	23145	mdanderson.org	37	7	149520536	149520536	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_198455	exon92	c.C13354T	p.L4452L	.	.	20	3	36	0	.	.
ST8SIA3	51046	hgsc.bcm.edu	37	18	55027274	55027274	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ST8SIA3	NM_015879	exon4	c.T909C	p.I303I	.	.	79	3	172	0	.	136
ST8SIA4	7903	hgsc.bcm.edu	37	5	100231449	100231449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ST8SIA4	NM_175052	exon2	c.T154C	p.S52P	.	.	105	5	171	0	.	153
STAB1	23166	hgsc.bcm.edu	37	3	52556640	52556640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAB1	NM_015136	exon61	c.A6680G	p.E2227G	.	.	88	4	116	0	.	139
STAB2	55576	bcgsc.ca	37	12	104100570	104100570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAB2	NM_017564	exon38	c.A3997G	p.T1333A	.	.	247	7	359	1	.	104
STAG2	10735	hgsc.bcm.edu	37	X	123190045	123190045	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAG2	NM_001042749	exon14	c.C1264A	p.R422R	.	.	88	4	79	0	.	134
STAG2	10735	hgsc.bcm.edu	37	X	123190067	123190067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STAG2	NM_001042749	exon14	c.G1286T	p.G429V	.	.	74	4	67	0	.	134
STARD4	134429	hgsc.bcm.edu;bcgsc.ca	37	5	110837775	110837775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STARD4	NM_139164	exon4	c.A167G	p.Q56R	.	.	70	4	99	0	.	227
STIM2	57620	bcgsc.ca	37	4	27024170	27024170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STIM2	NM_001169118	exon13	c.A1817G	p.D606G	.	.	166	5	262	0	.	91
STK10	6793	hgsc.bcm.edu	37	5	171520874	171520874	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK10	NM_005990	exon9	c.C1096T	p.L366L	.	.	95	4	150	0	.	1022
STK17A	9263	hgsc.bcm.edu;bcgsc.ca	37	7	43663335	43663335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STK17A	NM_004760	exon6	c.G768T	p.M256I	.	.	82	5	81	0	.	335
STON2	85439	hgsc.bcm.edu	37	14	81744156	81744156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STON2	NM_001256430	exon6	c.G1499T	p.R500L	.	.	113	5	131	0	.	95
STT3B	201595	hgsc.bcm.edu	37	3	31574743	31574743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STT3B	NM_178862	exon1	c.T253C	p.F85L	.	.	83	4	114	0	.	90
STX1A	6804	hgsc.bcm.edu	37	7	73119552	73119552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STX1A	NM_004603	exon4	c.A211G	p.T71A	.	.	112	5	171	0	.	90
STX2	2054	hgsc.bcm.edu	37	12	131311746	131311746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	STX2	NM_194356	exon2	c.T97C	p.F33L	.	.	83	4	125	0	.	90
SUCO	51430	bcgsc.ca	37	1	172520708	172520708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_014283	exon2	c.A119G	p.Y40C	.	.	80	4	131	0	.	.
SUGT1P1	441394	bcgsc.ca	37	9	33509142	33509142	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	71	4	112	0	.	.
SUN1	23353	hgsc.bcm.edu	37	7	881715	881715	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SUN1	NM_001171945	exon5	c.T462C	p.P154P	.	.	69	4	111	0	.	90
SUPT20H	55578	hgsc.bcm.edu;bcgsc.ca	37	13	37591496	37591496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_017569	exon23	c.A1881G	p.P627P	.	.	137	6	207	0	.	.
SUPT6H	6830	hgsc.bcm.edu	37	17	27014158	27014158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SUPT6H	NM_003170	exon22	c.G2753T	p.R918L	.	.	97	4	100	0	.	93
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91769904	91769904	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SV2B	NM_014848	exon3	c.G411A	p.E137E	.	.	80	26	76	0	.	97
SVIL	6840	hgsc.bcm.edu	37	10	29820188	29820188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SVIL	NM_021738	exon10	c.T2039C	p.V680A	.	.	79	4	78	0	.	96
SYCE1L	100130958	hgsc.bcm.edu;bcgsc.ca	37	16	77243331	77243331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001129979	exon6	c.C322A	p.Q108K	.	.	54	4	89	0	.	.
SYDE2	84144	bcgsc.ca	37	1	85648161	85648161	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYDE2	NM_032184	exon3	c.C2164A	p.R722R	.	.	119	6	195	0	.	70
SYNE1	23345	hgsc.bcm.edu	37	6	152457873	152457873	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNE1	NM_182961	exon141	c.C25539T	p.D8513D	.	.	82	5	155	0	.	607
SYNE2	23224	hgsc.bcm.edu	37	14	64630261	64630261	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNE2	NM_182914	exon89	c.T16441C	p.L5481L	.	.	94	4	120	0	.	164
SYNJ2	8871	bcgsc.ca	37	6	158495768	158495768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNJ2	NM_003898	exon16	c.A2290G	p.K764E	.	.	77	4	164	1	.	227
SYNJ2	8871	hgsc.bcm.edu;bcgsc.ca	37	6	158449995	158449995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	SYNJ2	NM_003898	exon3	c.A422G	p.D141G	.	.	61	5	114	0	.	227
TAB1	10454	bcgsc.ca	37	22	39811557	39811557	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAB1	NM_153497	exon3	c.C223A	p.R75R	.	.	135	5	148	1	.	522
TAF4B	6875	hgsc.bcm.edu	37	18	23847518	23847518	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAF4B	NM_005640	exon3	c.A528G	p.T176T	.	.	89	4	126	0	.	71
TANGO2	128989	hgsc.bcm.edu	37	22	20043483	20043483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_152906	exon6	c.T398G	p.V133G	.	.	119	5	126	0	.	.
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68953121	68953121	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_024562	exon12	c.A2126T	p.Q709L	.	.	112	23	220	0	.	.
TAP1	6890	hgsc.bcm.edu	37	6	32816572	32816572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon7	c.T1603C	p.S535P	.	.	89	3	99	0	.	91
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32820940	32820940	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAP1	NM_000593	exon1	c.G654T	p.G218G	.	.	103	32	129	0	.	91
TAS1R1	80835	hgsc.bcm.edu	37	1	6630972	6630972	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAS1R1	NM_177540	exon2	c.T195C	p.S65S	.	.	65	4	85	0	.	516
TAS2R13	50838	bcgsc.ca	37	12	11062152	11062152	+	RNA	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAS2R13	.	.	.	.	.	.	59	4	83	0	.	154
TAS2R8	50836	hgsc.bcm.edu	37	12	10959161	10959161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAS2R8	NM_023918	exon1	c.T419C	p.I140T	.	.	84	4	123	0	.	92
TAX1BP1	8887	hgsc.bcm.edu	37	7	27832797	27832797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TAX1BP1	NM_006024	exon10	c.T1376C	p.L459P	.	.	122	5	142	0	.	153
TBC1D1	23216	hgsc.bcm.edu	37	4	38055861	38055861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D1	NM_001253912	exon14	c.G2234T	p.G745V	.	.	70	4	92	0	.	91
TBC1D23	55773	hgsc.bcm.edu;bcgsc.ca	37	3	100002653	100002653	+	Silent	SNP	C	C	T	rs200870879	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D23	NM_001199198	exon4	c.C474T	p.P158P	.	.	83	4	108	0	C|0.999;G|0.000	92
TBC1D3P2	440452	broad.mit.edu;bcgsc.ca	37	17	60348756	60348756	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBC1D3P2	.	.	.	.	.	.	176	88	217	0	.	68
TBL1XR1	79718	hgsc.bcm.edu	37	3	176744244	176744244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBL1XR1	NM_024665	exon15	c.A1435G	p.S479G	.	.	99	4	96	0	.	187
TBPL1	9519	hgsc.bcm.edu	37	6	134304019	134304019	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBPL1	NM_001253676	exon4	c.282+1G>A	.	.	.	121	5	195	0	.	90
TBX22	50945	hgsc.bcm.edu;bcgsc.ca	37	X	79282236	79282236	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TBX22	NM_016954	exon5	c.C667A	p.R223R	.	.	93	4	83	0	.	628
TCF3	6929	bcgsc.ca	37	19	1632403	1632403	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TCF3	NM_003200	exon4	c.T147C	p.G49G	.	.	144	5	198	1	.	721
TCF4	6925	hgsc.bcm.edu	37	18	52937094	52937094	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TCF4	NM_001243226	exon12	c.C1196T	p.T399M	.	.	96	4	175	0	.	523
TCOF1	6949	bcgsc.ca	37	5	149772936	149772936	+	Missense_Mutation	SNP	C	C	A	rs112227999	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TCOF1	NM_001135243	exon23	c.C3602A	p.S1201Y	.	.	60	4	91	0	A|0.000;C|1.000;T|0.000	155
TDP2	51567	hgsc.bcm.edu	37	6	24653322	24653322	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TDP2	NM_016614	exon6	c.G696A	p.G232G	.	.	113	5	138	0	.	660
TDRD10	126668	hgsc.bcm.edu	37	1	154515291	154515291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TDRD10	NM_182499	exon8	c.A497G	p.E166G	.	.	93	4	166	0	.	91
TECTA	7007	bcgsc.ca	37	11	121059832	121059832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TECTA	NM_005422	exon21	c.A6206G	p.E2069G	.	.	157	6	218	0	.	225
TENC1	23371	hgsc.bcm.edu	37	12	53456471	53456471	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TENC1	NM_015319	exon25	c.T3843C	p.R1281R	.	.	57	4	86	0	.	92
TENM3	55714	hgsc.bcm.edu	37	4	183676072	183676072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001080477	exon21	c.G4552T	p.D1518Y	.	.	53	4	73	0	.	.
TEP1	7011	hgsc.bcm.edu	37	14	20874483	20874483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TEP1	NM_007110	exon3	c.A644G	p.E215G	.	.	92	4	107	0	.	95
TEX40	25858	hgsc.bcm.edu	37	11	64071271	64071271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001039496	exon4	c.G459T	p.M153I	.	.	95	4	127	0	.	.
TFCP2	7024	bcgsc.ca	37	12	51512507	51512507	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TFCP2	NM_001173452	exon2	c.T171C	p.P57P	.	.	139	5	166	0	.	91
TFF3	7033	hgsc.bcm.edu	37	21	43733711	43733711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TFF3	NM_003226	exon2	c.A155G	p.D52G	.	.	70	4	111	0	.	91
TFR2	7036	hgsc.bcm.edu	37	7	100225214	100225214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TFR2	NM_003227	exon15	c.T1753C	p.F585L	.	.	65	4	64	0	.	92
TGFB3	7043	hgsc.bcm.edu;bcgsc.ca	37	14	76437504	76437504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGFB3	NM_003239	exon3	c.T611C	p.V204A	.	.	53	4	62	0	.	524
TGM3	7053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2290970	2290970	+	Missense_Mutation	SNP	C	C	T	rs139117716		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TGM3	NM_003245	exon3	c.C328T	p.R110W	.	.	131	51	143	0	C|1.000;T|0.000	139
THAP3	90326	hgsc.bcm.edu	37	1	6692465	6692465	+	Silent	SNP	G	G	T	rs146637042	byfrequency;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THAP3	NM_138350	exon4	c.G369T	p.A123A	.	.	95	4	122	0	G|1.000;A|0.000	514
THAP6	152815	broad.mit.edu	37	4	76447032	76447032	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THAP6	NM_144721	exon4	c.T375C	p.A125A	.	.	478	8	537	0	.	90
THBS1	7057	hgsc.bcm.edu	37	15	39886308	39886308	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THBS1	NM_003246	exon20	c.C3276A	p.T1092T	.	.	103	5	122	0	.	653
THOC5	8563	hgsc.bcm.edu;bcgsc.ca	37	22	29939435	29939435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THOC5	NM_001002878	exon5	c.A337G	p.R113G	.	.	182	8	109	0	.	585
THSD1	55901	hgsc.bcm.edu	37	13	52971400	52971400	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THSD1	NM_018676	exon3	c.A988T	p.K330X	.	.	99	4	139	0	.	94
THSD7B	80731	hgsc.bcm.edu	37	2	138400205	138400205	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	THSD7B	NM_001080427	exon20	c.3857+2T>A	.	.	.	52	4	70	0	.	75
TIA1	7072	hgsc.bcm.edu	37	2	70441567	70441567	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIA1	NM_022173	exon12	c.A948G	p.A316A	.	.	123	5	152	0	.	90
TIMD4	91937	hgsc.bcm.edu	37	5	156375500	156375500	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIMD4	NM_138379	exon5	c.T771C	p.V257V	.	.	93	4	154	0	.	92
TIPRL	261726	hgsc.bcm.edu;bcgsc.ca	37	1	168169255	168169255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TIPRL	NM_152902	exon7	c.G790T	p.D264Y	.	.	91	4	101	0	.	91
TJP2	9414	hgsc.bcm.edu	37	9	71845110	71845110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TJP2	NM_001170416	exon11	c.G1726T	p.E576X	.	.	83	4	96	0	.	115
TK2	7084	bcgsc.ca	37	16	66565372	66565372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TK2	NM_004614	exon5	c.G286A	p.G96S	.	.	55	4	68	0	.	115
TKTL1	8277	hgsc.bcm.edu	37	X	153543546	153543546	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TKTL1	NM_012253	exon7	c.T888C	p.G296G	.	.	78	4	84	0	.	134
TLE4	7091	hgsc.bcm.edu;bcgsc.ca	37	9	82337475	82337475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLE4	NM_007005	exon18	c.T2096C	p.L699P	.	.	125	5	207	0	.	524
TLR10	81793	hgsc.bcm.edu	37	4	38776477	38776477	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR10	NM_001017388	exon2	c.G735T	p.S245S	.	.	109	5	130	0	.	522
TLR5	7100	hgsc.bcm.edu	37	1	223286028	223286028	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C346T	p.Q116X	.	.	121	5	156	0	.	525
TLR5	7100	hgsc.bcm.edu;bcgsc.ca	37	1	223286221	223286221	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TLR5	NM_003268	exon6	c.C153A	p.L51L	.	.	123	5	122	0	.	525
TMC5	79838	broad.mit.edu;bcgsc.ca	37	16	19485475	19485475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMC5	NM_001105249	exon12	c.C1967T	p.A656V	.	.	278	9	460	0	.	91
TMEM102	284114	bcgsc.ca	37	17	7340029	7340029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM102	NM_178518	exon3	c.T731C	p.V244A	.	.	87	5	210	0	.	90
TMEM104	54868	hgsc.bcm.edu	37	17	72786394	72786394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM104	NM_017728	exon5	c.A305G	p.D102G	.	.	74	4	61	0	.	90
TMEM132A	54972	bcgsc.ca	37	11	60703889	60703889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM132A	NM_017870	exon11	c.T2585C	p.I862T	.	.	151	5	209	1	.	227
TMEM135	65084	hgsc.bcm.edu;bcgsc.ca	37	11	87029247	87029247	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM135	NM_022918	exon13	c.T1146C	p.Y382Y	.	.	69	4	103	0	.	514
TMEM200A	114801	hgsc.bcm.edu	37	6	130762130	130762130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM200A	NM_001258277	exon3	c.T563A	p.L188X	.	.	80	4	194	0	.	23
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27258486	27258486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM214	NM_017727	exon4	c.G527A	p.R176Q	.	.	59	15	88	0	.	115
TMEM63B	55362	bcgsc.ca	37	6	44119655	44119655	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMEM63B	NM_018426	exon19	c.C1746T	p.A582A	.	.	137	5	235	0	.	92
TMPRSS11E	28983	broad.mit.edu	37	4	69342043	69342043	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMPRSS11E	NM_014058	exon7	c.A594G	p.V198V	.	.	1205	8	1700	0	.	70
TMPRSS15	5651	bcgsc.ca	37	21	19687562	19687562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TMPRSS15	NM_002772	exon17	c.G1933A	p.A645T	.	.	45	5	64	0	.	160
TNFRSF10D	8793	hgsc.bcm.edu	37	8	22995463	22995463	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNFRSF10D	NM_003840	exon9	c.A1081G	p.T361A	.	.	98	4	195	0	.	651
TNFRSF21	27242	hgsc.bcm.edu	37	6	47202533	47202533	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNFRSF21	NM_014452	exon5	c.G1611A	p.T537T	.	.	48	4	78	0	.	227
TNNI3	7137	broad.mit.edu;bcgsc.ca	37	19	55663250	55663250	+	Silent	SNP	G	G	A	rs200085986		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNNI3	.	.	.	.	.	.	227	11	232	0	.	92
TNRC18	84629	hgsc.bcm.edu	37	7	5391469	5391469	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon17	c.G5451T	p.S1817S	.	.	99	4	163	0	.	46
TNRC18	84629	hgsc.bcm.edu;bcgsc.ca	37	7	5396822	5396822	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC18	NM_001080495	exon16	c.A4919G	p.D1640G	.	.	199	9	212	0	.	46
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24834848	24834848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNRC6A	NM_014494	exon25	c.C5609A	p.P1870H	.	.	61	4	104	0	.	92
TNXB	7148	hgsc.bcm.edu	37	6	32020470	32020470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon26	c.C9086T	p.P3029L	.	.	117	4	182	0	.	90
TNXB	7148	hgsc.bcm.edu;bcgsc.ca	37	6	32057134	32057134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TNXB	NM_019105	exon5	c.T2381C	p.F794S	.	.	65	4	58	0	.	90
TOLLIP	54472	bcgsc.ca	37	11	1316985	1316985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TOLLIP	NM_019009	exon2	c.A73G	p.T25A	.	.	138	6	261	3	.	90
TOP2A	7153	hgsc.bcm.edu;bcgsc.ca	37	17	38556308	38556308	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TOP2A	NM_001067	exon24	c.C3012T	p.D1004D	.	.	57	4	57	0	.	655
TPM2	7169	hgsc.bcm.edu	37	9	35685445	35685445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TPM2	NM_213674	exon4	c.C478A	p.R160S	.	.	95	4	103	0	.	515
TPTE2P1	646405	bcgsc.ca	37	13	25525551	25525551	+	RNA	SNP	G	G	T	rs140087583	by1000genomes;alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	.	.	.	218	6	278	0	G|0.997;A|0.003	.
TRANK1	9881	hgsc.bcm.edu	37	3	36880152	36880152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRANK1	NM_014831	exon18	c.T5204C	p.L1735P	.	.	136	7	117	0	.	24
TRAPPC8	22878	hgsc.bcm.edu	37	18	29437916	29437916	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRAPPC8	NM_014939	exon20	c.T2775C	p.L925L	.	.	82	4	146	0	.	159
TRAPPC8	22878	hgsc.bcm.edu	37	18	29497605	29497605	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRAPPC8	NM_014939	exon3	c.C378A	p.Y126X	.	.	66	4	136	0	.	159
TRIM3	10612	hgsc.bcm.edu;bcgsc.ca	37	11	6472512	6472512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM3	NM_001248006	exon8	c.G1690A	p.G564S	.	.	53	4	85	0	.	714
TRIM41	90933	hgsc.bcm.edu	37	5	180651508	180651508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM41	NM_201627	exon1	c.C509T	p.P170L	.	.	95	4	164	0	.	226
TRIM46	80128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155154372	155154372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIM46	NM_025058	exon9	c.C1633T	p.R545W	.	.	127	20	162	1	.	228
TRIM51	84767	hgsc.bcm.edu;bcgsc.ca	37	11	55653258	55653258	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_032681	exon2	c.T354C	p.S118S	.	.	96	5	158	0	.	.
TRIOBP	11078	hgsc.bcm.edu	37	22	38165281	38165281	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIOBP	NM_001039141	exon21	c.C6748A	p.R2250S	.	.	70	4	75	0	.	136
TRIP4	9325	hgsc.bcm.edu	37	15	64689807	64689807	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRIP4	NM_016213	exon4	c.A408G	p.A136A	.	.	94	5	128	0	.	188
TRPV6	55503	hgsc.bcm.edu	37	7	142569466	142569466	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRPV6	NM_018646	exon15	c.G2172A	p.Q724Q	.	.	91	5	126	0	.	92
TRRAP	8295	bcgsc.ca	37	7	98606053	98606053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TRRAP	NM_001244580	exon69	c.T10765C	p.S3589P	.	.	108	6	136	1	.	923
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18502150	18502150	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSG101	NM_006292	exon10	c.G1116A	p.Q372Q	.	.	127	50	215	0	.	90
TSSK2	23617	hgsc.bcm.edu	37	22	19119730	19119730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TSSK2	NM_053006	exon1	c.A818G	p.Q273R	.	.	80	4	94	0	.	333
TTC16	158248	hgsc.bcm.edu	37	9	130482418	130482418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTC16	NM_144965	exon5	c.C488T	p.A163V	.	.	96	5	152	0	.	90
TTF2	8458	hgsc.bcm.edu;bcgsc.ca	37	1	117641477	117641477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTF2	NM_003594	exon22	c.G3292T	p.A1098S	.	.	81	4	124	0	.	91
TTN	7273	hgsc.bcm.edu	37	2	179419855	179419855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon331	c.T88331C	p.L29444P	.	.	98	4	98	0	.	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179413062	179413062	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTN	NM_001267550	exon339	c.T93291C	p.G31097G	.	.	56	4	86	0	.	636
TTYH2	94015	bcgsc.ca	37	17	72227033	72227033	+	Silent	SNP	G	G	T	rs150112430	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TTYH2	NM_032646	exon3	c.G309T	p.A103A	.	.	248	7	265	0	A|0.000;G|0.999;T|0.000	138
TUBGCP3	10426	hgsc.bcm.edu	37	13	113242240	113242240	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TUBGCP3	NM_006322	exon1	c.A55G	p.R19G	.	.	94	4	108	0	.	90
TULP2	7288	hgsc.bcm.edu	37	19	49384335	49384335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	TULP2	NM_003323	exon13	c.C1496T	p.T499I	.	.	82	4	72	0	.	93
UBAP2	55833	hgsc.bcm.edu;bcgsc.ca	37	9	33996317	33996317	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2	NM_018449	exon4	c.A192G	p.T64T	.	.	119	5	168	0	.	94
UBAP2L	9898	hgsc.bcm.edu	37	1	154218760	154218760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBAP2L	NM_001127320	exon11	c.C923A	p.P308H	.	.	78	4	114	0	.	91
UBE2E1	7324	bcgsc.ca	37	3	23930615	23930615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBE2E1	NM_003341	exon5	c.A349G	p.T117A	.	.	140	5	150	0	.	226
UBE4A	9354	hgsc.bcm.edu	37	11	118245776	118245776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBE4A	NM_004788	exon9	c.A1303G	p.M435V	.	.	95	4	158	0	.	229
UBE4B	10277	hgsc.bcm.edu	37	1	10205093	10205093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBE4B	NM_001105562	exon18	c.T2459A	p.L820H	.	.	93	3	150	0	.	229
UBR1	197131	broad.mit.edu;bcgsc.ca	37	15	43307937	43307937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBR1	NM_174916	exon29	c.A3158G	p.D1053G	.	.	304	7	382	3	.	91
UBXN7	26043	bcgsc.ca	37	3	196089374	196089374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UBXN7	NM_015562	exon9	c.A1019G	p.E340G	.	.	154	5	155	0	.	71
UCHL3	7347	hgsc.bcm.edu;bcgsc.ca	37	13	76135000	76135000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UCHL3	NM_006002	exon3	c.T166C	p.F56L	.	.	105	5	135	0	.	522
UGDH	7358	hgsc.bcm.edu;bcgsc.ca	37	4	39511398	39511398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UGDH	NM_003359	exon6	c.T793C	p.F265L	.	.	77	4	90	0	.	156
UNC13C	440279	bcgsc.ca	37	15	54307900	54307900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13C	NM_001080534	exon1	c.G2800T	p.G934W	.	.	140	7	158	1	.	51
UNC13C	440279	hgsc.bcm.edu;bcgsc.ca	37	15	54305696	54305696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13C	NM_001080534	exon1	c.A596G	p.E199G	.	.	90	4	141	0	.	51
UNC13D	201294	hgsc.bcm.edu	37	17	73840396	73840396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC13D	NM_199242	exon1	c.C23A	p.P8Q	.	.	84	4	131	0	.	92
UNC45B	146862	hgsc.bcm.edu	37	17	33477142	33477142	+	Missense_Mutation	SNP	A	A	G	rs199596223		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC45B	NM_001267052	exon4	c.A281G	p.D94G	.	.	63	4	66	0	A|0.999;G|0.000	157
UNC80	285175	hgsc.bcm.edu	37	2	210843335	210843335	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UNC80	NM_032504	exon58	c.T8823C	p.S2941S	.	.	85	4	107	0	.	90
UPB1	51733	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	24896100	24896100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPB1	NM_016327	exon2	c.T130C	p.F44L	.	.	36	4	32	0	.	92
UPP2	151531	hgsc.bcm.edu	37	2	158971674	158971674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UPP2	NM_001135098	exon5	c.A413G	p.E138G	.	.	133	6	125	0	.	90
USH2A	7399	hgsc.bcm.edu;bcgsc.ca	37	1	215963585	215963585	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USH2A	NM_206933	exon51	c.A9998G	p.D3333G	.	.	122	5	156	0	.	115
USP15	9958	hgsc.bcm.edu;bcgsc.ca	37	12	62783254	62783254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP15	NM_001252078	exon12	c.G1517T	p.C506F	.	.	89	5	149	0	.	1084
USP24	23358	bcgsc.ca	37	1	55638071	55638071	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP24	NM_015306	exon4	c.T681C	p.G227G	.	.	172	5	293	0	.	521
USP24	23358	hgsc.bcm.edu;bcgsc.ca	37	1	55537593	55537593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP24	NM_015306	exon67	c.C7694A	p.T2565K	.	.	66	4	137	0	.	521
USP53	54532	bcgsc.ca	37	4	120160937	120160937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	USP53	NM_019050	exon4	c.G23T	p.R8L	.	.	109	4	106	0	.	660
UVRAG	7405	hgsc.bcm.edu;bcgsc.ca	37	11	75851784	75851784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	UVRAG	NM_003369	exon15	c.C1427A	p.P476H	.	.	74	4	119	0	.	229
VASH1	22846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77237533	77237533	+	Silent	SNP	G	G	A	rs202147705	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VASH1	NM_014909	exon3	c.G399A	p.Q133Q	.	.	357	98	452	0	.	90
VCL	7414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	75854142	75854142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCL	NM_003373	exon11	c.C1466T	p.A489V	.	.	239	11	258	0	.	93
VCP	7415	hgsc.bcm.edu	37	9	35060881	35060881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VCP	NM_007126	exon12	c.A1399G	p.T467A	.	.	119	5	145	0	.	228
VEZF1	7716	bcgsc.ca	37	17	56056607	56056607	+	Silent	SNP	C	C	T	rs73995411	byfrequency	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VEZF1	NM_007146	exon5	c.G1044A	p.Q348Q	.	.	271	9	266	5	C|0.969;T|0.031	136
VILL	50853	hgsc.bcm.edu	37	3	38044780	38044780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VILL	NM_015873	exon14	c.G1781T	p.R594L	.	.	74	4	58	0	.	90
VPS16	64601	hgsc.bcm.edu	37	20	2845074	2845074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS16	NM_022575	exon18	c.G1784T	p.R595L	.	.	74	4	81	0	.	94
VPS25	84313	bcgsc.ca	37	17	40925864	40925864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS25	NM_032353	exon2	c.A167G	p.E56G	.	.	56	4	57	0	.	90
VPS36	51028	hgsc.bcm.edu;bcgsc.ca	37	13	53008984	53008984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS36	NM_016075	exon5	c.A385G	p.R129G	.	.	98	4	134	0	.	91
VPS41	27072	hgsc.bcm.edu	37	7	38781711	38781711	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS41	NM_014396	exon25	c.T2133C	p.T711T	.	.	96	4	135	0	.	93
VPS53	55275	hgsc.bcm.edu	37	17	526908	526908	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VPS53	NM_001128159	exon11	c.A981G	p.E327E	.	.	94	4	103	0	.	90
VWA5B1	127731	hgsc.bcm.edu	37	1	20657405	20657405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001039500	exon11	c.G1501A	p.V501M	.	.	110	5	251	0	.	.
VWF	7450	hgsc.bcm.edu	37	12	6128323	6128323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	VWF	NM_000552	exon28	c.A4261G	p.N1421D	.	.	96	4	142	0	.	163
WDFY4	57705	hgsc.bcm.edu;bcgsc.ca	37	10	49939422	49939422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDFY4	NM_020945	exon9	c.T1397C	p.I466T	.	.	69	5	68	0	.	22
WDR52	55779	hgsc.bcm.edu	37	3	113119484	113119484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR52	NM_001164496	exon12	c.A1382G	p.D461G	.	.	89	4	129	0	.	90
WDR64	128025	hgsc.bcm.edu;bcgsc.ca	37	1	241886642	241886642	+	Silent	SNP	C	C	A	rs145843472	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR64	NM_144625	exon9	c.C1068A	p.T356T	.	.	76	4	110	0	C|1.000;T|0.000	91
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43664184	43664184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR65	NM_001195831	exon8	c.A1295G	p.E432G	.	.	73	4	93	0	.	91
WDR88	126248	hgsc.bcm.edu	37	19	33647326	33647326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR88	NM_173479	exon7	c.C875A	p.S292Y	.	.	91	4	85	0	.	154
WDR90	197335	hgsc.bcm.edu	37	16	711769	711769	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WDR90	NM_145294	exon31	c.G3846T	p.G1282G	.	.	87	4	220	0	.	92
WIPF1	7456	bcgsc.ca	37	2	175432650	175432650	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WIPF1	NM_003387	exon6	c.A1281G	p.A427A	.	.	70	5	105	1	.	92
WLS	79971	hgsc.bcm.edu	37	1	68611689	68611689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WLS	NM_024911	exon9	c.T1141C	p.F381L	.	.	59	4	100	0	.	90
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	922831	922831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon2	c.G783T	p.E261D	.	.	73	5	113	0	.	916
WNK1	65125	hgsc.bcm.edu;bcgsc.ca	37	12	994233	994233	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WNK1	NM_001184985	exon19	c.T5043C	p.V1681V	.	.	99	4	103	0	.	916
WSB2	55884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118472835	118472835	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WSB2	NM_018639	exon8	c.G1008C	p.G336G	.	.	117	9	113	0	.	91
WWC1	23286	hgsc.bcm.edu	37	5	167882362	167882362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	WWC1	NM_015238	exon19	c.T2660C	p.V887A	.	.	99	4	199	0	.	157
XRN1	54464	broad.mit.edu	37	3	142136023	142136023	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	XRN1	NM_001042604	exon13	c.G1395A	p.W465X	.	.	419	112	462	2	.	93
XYLB	9942	hgsc.bcm.edu;bcgsc.ca	37	3	38416703	38416703	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	XYLB	NM_005108	exon12	c.C957T	p.H319H	.	.	88	4	134	0	.	91
YME1L1	10730	hgsc.bcm.edu;bcgsc.ca	37	10	27409405	27409405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YME1L1	NM_139312	exon14	c.A1541G	p.E514G	.	.	88	4	117	0	.	91
YPEL4	219539	hgsc.bcm.edu	37	11	57413535	57413535	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YPEL4	NM_145008	exon5	c.T303C	p.A101A	.	.	79	5	93	0	.	90
YPEL5	51646	hgsc.bcm.edu	37	2	30381672	30381672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	YPEL5	NM_001127400	exon4	c.A329G	p.E110G	.	.	76	4	84	0	.	90
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100334459	100334459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZAN	.	.	.	.	.	.	24	4	26	0	.	142
ZBTB11	27107	broad.mit.edu	37	3	101384288	101384288	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB11	NM_014415	exon4	c.A1143G	p.G381G	.	.	284	7	321	1	.	91
ZBTB32	27033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36206306	36206306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB32	NM_014383	exon2	c.C778A	p.P260T	.	.	34	8	80	0	.	92
ZBTB3	79842	hgsc.bcm.edu	37	11	62520653	62520653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB3	NM_024784	exon2	c.A634G	p.T212A	.	.	94	4	93	0	.	585
ZBTB38	253461	hgsc.bcm.edu	37	3	141164366	141164366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB38	NM_001080412	exon8	c.T3136C	p.C1046R	.	.	107	6	103	0	.	25
ZBTB9	221504	hgsc.bcm.edu	37	6	33423704	33423704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZBTB9	NM_152735	exon2	c.C827T	p.P276L	.	.	96	5	91	0	.	90
ZCCHC14	23174	ucsc.edu	37	16	87446014	87446014	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZCCHC14	NM_015144	exon12	c.T1902C	p.R634R	.	.	41	4	106	0	.	154
ZDBF2	57683	hgsc.bcm.edu	37	2	207170906	207170906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZDBF2	NM_020923	exon5	c.A1654G	p.R552G	.	.	63	5	84	0	.	3
ZER1	10444	hgsc.bcm.edu	37	9	131515870	131515870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZER1	NM_006336	exon4	c.G319A	p.E107K	.	.	62	4	96	0	.	91
ZER1	10444	ucsc.edu	37	9	131513758	131513758	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZER1	NM_006336	exon6	c.G972A	p.R324R	.	.	38	4	59	0	.	91
ZFP1	162239	bcgsc.ca	37	16	75203557	75203557	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZFP1	NM_153688	exon4	c.T549C	p.P183P	.	.	248	6	320	0	.	92
ZFYVE28	57732	hgsc.bcm.edu	37	4	2306996	2306996	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZFYVE28	NM_020972	exon8	c.C1071T	p.S357S	.	.	94	4	109	0	.	93
ZKSCAN3	80317	hgsc.bcm.edu;bcgsc.ca	37	6	28333988	28333988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZKSCAN3	NM_024493	exon6	c.A1543G	p.K515E	.	.	72	4	88	0	.	92
ZKSCAN8	7745	hgsc.bcm.edu	37	6	28121227	28121227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_006298	exon6	c.A1169G	p.N390S	.	.	161	8	181	0	.	.
ZMAT3	64393	hgsc.bcm.edu	37	3	178745434	178745434	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZMAT3	NM_022470	exon4	c.C557A	p.S186X	.	.	81	4	104	0	.	228
ZMYM1	79830	hgsc.bcm.edu	37	1	35579987	35579987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZMYM1	NM_024772	exon10	c.G2556T	p.L852F	.	.	119	5	173	0	.	90
ZNF140	7699	hgsc.bcm.edu	37	12	133682950	133682950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF140	NM_003440	exon5	c.G1087T	p.G363C	.	.	88	7	113	0	.	90
ZNF141	7700	hgsc.bcm.edu	37	4	367349	367349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF141	NM_003441	exon4	c.G1123T	p.A375S	.	.	91	4	122	0	.	90
ZNF180	7733	hgsc.bcm.edu	37	19	44982061	44982061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF180	NM_013256	exon5	c.A637G	p.I213V	.	.	95	4	96	0	.	92
ZNF182	7569	hgsc.bcm.edu	37	X	47836310	47836310	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	ZNF182,NS,carcinoma,-2	ZNF182	NM_006962	exon7	c.C1176T	p.H392H	.	.	96	5	148	0	.	132
ZNF19	7567	bcgsc.ca	37	16	71509499	71509499	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF19	NM_006961	exon6	c.C951T	p.S317S	.	.	157	6	272	0	.	90
ZNF205	7755	bcgsc.ca	37	16	3169289	3169289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF205	NM_003456	exon7	c.T628C	p.S210P	.	.	70	4	108	0	.	90
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22156027	22156027	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF208	NM_007153	exon4	c.T1809C	p.H603H	.	.	62	31	63	0	.	7
ZNF211	10520	hgsc.bcm.edu	37	19	58153448	58153448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF211	NM_001265597	exon5	c.A1789G	p.T597A	.	.	95	4	107	0	.	92
ZNF227	7770	hgsc.bcm.edu	37	19	44740282	44740282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF227	NM_182490	exon6	c.C1699A	p.Q567K	.	.	142	6	113	0	.	91
ZNF229	7772	hgsc.bcm.edu	37	19	44933201	44933201	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF229	NM_014518	exon6	c.A1755G	p.S585S	.	.	85	4	95	0	.	94
ZNF256	10172	bcgsc.ca	37	19	58453053	58453053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF256	NM_005773	exon3	c.G1123T	p.G375C	.	.	135	5	97	0	.	92
ZNF280D	54816	hgsc.bcm.edu;bcgsc.ca	37	15	56924037	56924037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF280D	NM_017661	exon22	c.A2599G	p.K867E	.	.	74	4	93	0	.	46
ZNF284	342909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44590982	44590982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001037813	exon5	c.G1351A	p.G451R	.	.	154	52	168	0	.	.
ZNF302	55900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35173713	35173713	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_018443	exon3	c.C41G	p.S14C	.	.	281	89	296	0	.	.
ZNF304	57343	hgsc.bcm.edu;bcgsc.ca	37	19	57867978	57867978	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF304	NM_020657	exon3	c.G741T	p.E247D	.	.	94	4	92	0	.	91
ZNF317	57693	hgsc.bcm.edu;bcgsc.ca	37	19	9271853	9271853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF317	NM_020933	exon7	c.T1532C	p.F511S	.	.	70	5	65	0	.	90
ZNF318	24149	hgsc.bcm.edu;bcgsc.ca	37	6	43308192	43308192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF318	NM_014345	exon10	c.C3544A	p.R1182S	.	.	59	4	89	0	.	157
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58982592	58982592	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF324	NM_014347	exon4	c.G733T	p.E245X	.	.	180	52	170	0	.	90
ZNF33A	7581	hgsc.bcm.edu	37	10	38344489	38344489	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF33A	NM_006954	exon5	c.T1437C	p.S479S	.	.	97	4	91	0	.	93
ZNF382	84911	bcgsc.ca	37	19	37118256	37118256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF382	NM_032825	exon5	c.A1457G	p.H486R	.	.	184	6	182	0	.	90
ZNF396	252884	hgsc.bcm.edu;bcgsc.ca	37	18	32953458	32953458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF396	NM_145756	exon3	c.A524G	p.Q175R	.	.	130	6	275	0	.	90
ZNF407	55628	hgsc.bcm.edu	37	18	72516010	72516010	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF407	NM_001146190	exon4	c.T4968C	p.C1656C	.	.	96	4	121	0	.	92
ZNF436	80818	hgsc.bcm.edu	37	1	23688528	23688528	+	Silent	SNP	G	G	T	rs144729139	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF436	NM_001077195	exon4	c.C1347A	p.T449T	.	.	88	4	173	0	G|1.000;A|0.000	153
ZNF461	92283	bcgsc.ca	37	19	37129737	37129737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_153257	exon6	c.A1510G	p.K504E	.	.	172	6	159	1	.	.
ZNF461	92283	hgsc.bcm.edu;bcgsc.ca	37	19	37134755	37134755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_153257	exon5	c.A242G	p.K81R	.	.	92	4	96	0	.	.
ZNF469	84627	hgsc.bcm.edu	37	16	88500010	88500010	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001127464	exon2	c.A6048G	p.A2016A	.	.	60	3	160	0	.	.
ZNF470	388566	hgsc.bcm.edu	37	19	57089654	57089654	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF470	NM_001001668	exon6	c.A1857G	p.K619K	.	.	90	5	52	0	.	92
ZNF486	90649	hgsc.bcm.edu	37	19	20308359	20308359	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF486	NM_052852	exon4	c.C840A	p.T280T	.	.	76	5	74	0	.	47
ZNF493	284443	bcgsc.ca	37	19	21606092	21606092	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF493	NM_001076678	exon4	c.C631A	p.R211R	.	.	185	6	154	1	.	516
ZNF511	118472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135123793	135123793	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF511	NM_145806	exon4	c.554+1G>A	.	.	.	44	16	34	0	.	90
ZNF512B	57473	bcgsc.ca;mdanderson.org	37	20	62594498	62594498	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF512B	NM_020713	exon12	c.C1918A	p.R640R	.	.	20	3	35	0	.	90
ZNF514	84874	hgsc.bcm.edu	37	2	95815310	95815310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF514	NM_032788	exon5	c.A920G	p.Q307R	.	.	119	5	142	0	.	90
ZNF548	147694	bcgsc.ca	37	19	57910527	57910527	+	Missense_Mutation	SNP	G	G	T	rs202091268	alternate_allele	TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF548	NM_001172773	exon4	c.G908T	p.R303L	.	.	153	5	88	1	G|0.999;A|0.000	67
ZNF592	9640	hgsc.bcm.edu	37	15	85341254	85341254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF592	NM_014630	exon6	c.A2554G	p.T852A	.	.	76	4	97	0	.	96
ZNF619	285267	broad.mit.edu;bcgsc.ca	37	3	40529439	40529439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF619	NM_001145082	exon6	c.A1558G	p.R520G	.	.	153	5	153	1	.	91
ZNF648	127665	hgsc.bcm.edu;bcgsc.ca	37	1	182026597	182026597	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF648	NM_001009992	exon2	c.C549A	p.S183S	.	.	96	6	152	0	.	91
ZNF653	115950	hgsc.bcm.edu	37	19	11606896	11606896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF653	NM_138783	exon3	c.T428C	p.L143P	.	.	74	4	80	0	.	90
ZNF662	389114	hgsc.bcm.edu	37	3	42956424	42956424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF662	NM_001134656	exon4	c.C937A	p.Q313K	.	.	91	4	87	0	.	90
ZNF727	442319	hgsc.bcm.edu;bcgsc.ca	37	7	63538877	63538877	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001159522	exon4	c.A1450G	p.N484D	.	.	84	4	104	0	.	.
ZNF750	79755	hgsc.bcm.edu	37	17	80789773	80789773	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF750	NM_024702	exon2	c.C558T	p.N186N	.	.	86	4	96	0	.	90
ZNF774	342132	hgsc.bcm.edu	37	15	90903883	90903883	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF774	NM_001004309	exon4	c.C820A	p.R274R	.	.	84	5	86	0	.	90
ZNF776	284309	bcgsc.ca	37	19	58265284	58265284	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF776	NM_173632	exon3	c.A786G	p.R262R	.	.	155	6	88	0	.	91
ZNF778	197320	hgsc.bcm.edu	37	16	89294364	89294364	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001201407	exon7	c.A1668G	p.T556T	.	.	87	4	135	0	.	.
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_001144989	exon3	c.T2046C	p.H682H	.	.	190	1	160	0	.	.
ZNF831	128611	hgsc.bcm.edu	37	20	57768791	57768791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF831	NM_178457	exon1	c.T2717C	p.L906P	.	.	92	4	91	0	.	126
ZNF862	643641	hgsc.bcm.edu	37	7	149545056	149545056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF862	NM_001099220	exon4	c.T474C	p.A158A	.	.	119	6	128	0	.	69
ZNF91	7644	hgsc.bcm.edu;bcgsc.ca	37	19	23542731	23542731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZNF91	NM_003430	exon4	c.C3050A	p.T1017N	.	.	88	4	72	0	.	90
ZSCAN1	284312	hgsc.bcm.edu	37	19	58564802	58564802	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSCAN1	NM_182572	exon6	c.C610A	p.R204R	.	.	65	4	61	0	.	92
ZSCAN31	64288	hgsc.bcm.edu	37	6	28297130	28297130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	NM_030899	exon2	c.G331A	p.V111M	.	.	99	4	124	0	.	.
ZSWIM2	151112	hgsc.bcm.edu	37	2	187698746	187698746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSWIM2	NM_182521	exon6	c.G755A	p.C252Y	.	.	96	4	122	0	.	93
ZSWIM5	57643	hgsc.bcm.edu	37	1	45484490	45484490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	ZSWIM5	NM_020883	exon14	c.T3194C	p.V1065A	.	.	121	6	195	0	.	22
SIT1	27240	hgsc.bcm.edu	37	9	35650500	35650501	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-ES-A2HS-01A-11D-A183-10	TCGA-ES-A2HS-11A-11D-A183-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dcf45005-7e6d-4c26-9994-f973da7e814f	a9c45810-b691-4963-b215-977e8f93d1c2	.	.	.	.	.	p.R79C	.	.	.	.	.	.	.	
