Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASS	10157	hgsc.bcm.edu;bcgsc.ca	37	7	121721604	121721604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AASS	NM_005763	exon20	c.A2230G	p.N744D	.	.	67	4	110	0	.	92
ABCA12	26154	hgsc.bcm.edu;bcgsc.ca	37	2	215807647	215807647	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA12	NM_015657	exon43	c.6482+2T>C	.	.	.	86	4	114	0	.	99
ABCA3	21	hgsc.bcm.edu	37	16	2358552	2358552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA3	NM_001089	exon11	c.G1184T	p.R395L	.	.	85	4	153	0	.	1015
ABCA4	24	hgsc.bcm.edu	37	1	94520726	94520726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA4	NM_000350	exon16	c.T2528C	p.M843T	.	.	102	5	138	0	.	162
ABCA6	23460	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	67111077	67111077	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCA6	NM_080284	exon13	c.A1608G	p.G536G	.	.	46	5	52	0	.	159
ABCC9	10060	bcgsc.ca	37	12	22012580	22012580	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCC9	NM_005691	exon20	c.A2445G	p.G815G	.	.	124	5	207	2	.	96
ABCD4	5826	bcgsc.ca	37	14	74755453	74755453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABCD4	NM_005050	exon15	c.A1472G	p.E491G	.	.	42	4	69	0	.	292
ABHD12	26090	hgsc.bcm.edu;bcgsc.ca	37	20	25284191	25284191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABHD12	NM_001042472	exon11	c.A1024G	p.R342G	.	.	35	4	38	0	.	91
ABHD4	63874	bcgsc.ca	37	14	23072582	23072582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABHD4	NM_022060	exon3	c.A400G	p.T134A	.	.	60	4	86	2	.	90
ABI3BP	25890	broad.mit.edu	37	3	100511555	100511555	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABI3BP	NM_015429	exon23	c.A1946T	p.E649V	.	.	1114	10	1553	0	.	138
ABL1	25	hgsc.bcm.edu;bcgsc.ca	37	9	133761037	133761037	+	Silent	SNP	G	G	T	rs148391456	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ABL1	NM_007313	exon11	c.G3417T	p.S1139S	.	.	76	4	121	0	G|1.000;A|0.000	3810
ACACA	31	hgsc.bcm.edu;bcgsc.ca	37	17	35598872	35598872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACACA	NM_198834	exon23	c.A3029G	p.Q1010R	.	.	121	5	224	0	.	154
ACAP1	9744	hgsc.bcm.edu;bcgsc.ca	37	17	7249578	7249578	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAP1	NM_014716	exon11	c.T870C	p.I290I	.	.	109	5	189	0	.	153
ACAT2	39	hgsc.bcm.edu	37	6	160197213	160197213	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAT2	NM_005891	exon6	c.T666C	p.P222P	.	.	109	7	160	0	.	91
ACAT2	39	hgsc.bcm.edu	37	6	160197291	160197291	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACAT2	NM_005891	exon6	c.A744G	p.P248P	.	.	98	4	137	0	.	91
ACIN1	22985	hgsc.bcm.edu	37	14	23540644	23540644	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACIN1	NM_001164816	exon1	c.G108T	p.R36R	.	.	78	4	138	0	.	156
ACN9	57001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96810376	96810376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACN9	NM_020186	exon2	c.C227A	p.T76N	.	.	385	131	649	0	.	90
ACO1	48	hgsc.bcm.edu	37	9	32419134	32419134	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACO1	NM_002197	exon7	c.C757A	p.P253T	.	.	95	4	157	0	.	226
ACOX3	8310	hgsc.bcm.edu	37	4	8375349	8375349	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACOX3	NM_003501	exon16	c.A1835T	p.Y612F	.	.	84	4	123	0	.	90
ACPL2	92370	ucsc.edu;bcgsc.ca	37	3	141011192	141011192	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACPL2	NM_152282	exon8	c.T588C	p.S196S	.	.	47	4	64	0	.	91
ACRBP	84519	bcgsc.ca	37	12	6748190	6748190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACRBP	NM_032489	exon9	c.A1439G	p.D480G	.	.	73	4	149	0	.	90
ACSBG1	23205	hgsc.bcm.edu	37	15	78485849	78485849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACSBG1	NM_015162	exon5	c.A662G	p.K221R	.	.	76	5	134	0	.	91
ACTA2	59	hgsc.bcm.edu	37	10	90708594	90708594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACTA2	NM_001141945	exon2	c.G94A	p.V32I	.	.	78	4	119	0	.	90
ACTL7A	10881	hgsc.bcm.edu	37	9	111625693	111625693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ACTL7A	NM_006687	exon1	c.G1091T	p.S364I	.	.	75	4	123	0	.	90
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18622358	18622358	+	Missense_Mutation	SNP	G	G	A	rs200455820		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADAMTSL1	NM_052866	exon5	c.G592A	p.A198T	.	.	100	4	154	0	.	230
ADAMTSL1	92949	hgsc.bcm.edu	37	9	18681884	18681884	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADAMTSL1	NM_052866	exon12	c.A1416G	p.G472G	.	.	86	4	192	0	.	230
ADCK4	79934	hgsc.bcm.edu	37	19	41220243	41220243	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCK4	NM_001142555	exon3	c.G162A	p.L54L	.	.	84	4	126	0	.	319
ADCY4	196883	hgsc.bcm.edu	37	14	24791372	24791372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY4	NM_001198592	exon21	c.A2486G	p.E829G	.	.	93	5	115	0	.	93
ADCY6	112	bcgsc.ca	37	12	49165566	49165566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY6	NM_015270	exon18	c.T2978C	p.V993A	.	.	79	6	126	1	.	90
ADCY7	113	hgsc.bcm.edu;bcgsc.ca	37	16	50346835	50346835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY7	NM_001114	exon21	c.T2639C	p.V880A	.	.	51	4	83	0	.	91
ADCY8	114	bcgsc.ca	37	8	131964235	131964235	+	Missense_Mutation	SNP	C	C	G	rs201402635		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY8	NM_001115	exon3	c.G1120C	p.V374L	.	.	178	36	177	15	.	157
ADCY8	114	broad.mit.edu;bcgsc.ca	37	8	131861906	131861906	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADCY8	NM_001115	exon10	c.G2354A	p.R785Q	.	.	467	15	459	1	.	157
ADPRH	141	hgsc.bcm.edu	37	3	119301263	119301263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ADPRH	NM_001125	exon3	c.C247A	p.L83I	.	.	72	3	137	0	.	91
AFF3	3899	hgsc.bcm.edu	37	2	100209828	100209828	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AFF3	NM_001025108	exon14	c.T2370C	p.S790S	.	.	70	4	136	0	.	230
AGBL5	60509	hgsc.bcm.edu	37	2	27276891	27276891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AGBL5	NM_021831	exon4	c.A515G	p.D172G	.	.	89	5	140	0	.	154
AGFG2	3268	hgsc.bcm.edu	37	7	100161882	100161882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AGFG2	NM_006076	exon11	c.A1342G	p.R448G	.	.	81	4	120	0	.	90
AGO1	26523	hgsc.bcm.edu	37	1	36367622	36367622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	EIF2C1,NS,malignant_melanoma,-1	.	NM_012199	exon10	c.A1214G	p.E405G	.	.	121	5	204	0	.	.
AK7	122481	hgsc.bcm.edu	37	14	96917876	96917876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AK7	NM_152327	exon10	c.T1067C	p.L356P	.	.	88	4	105	0	.	228
AKAP11	11215	hgsc.bcm.edu	37	13	42891711	42891711	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP11	NM_016248	exon12	c.G5452T	p.E1818X	.	.	85	4	153	0	.	227
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca	37	15	86273745	86273745	+	Silent	SNP	A	A	G	rs116261620	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP13	NM_006738	exon30	c.A7101G	p.E2367E	.	.	56	4	60	0	A|0.998;C|0.002	258
AKAP6	9472	bcgsc.ca	37	14	32902771	32902771	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP6	NM_004274	exon2	c.A72G	p.S24S	.	.	145	6	176	1	.	733
AKAP6	9472	hgsc.bcm.edu	37	14	33014622	33014622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP6	NM_004274	exon4	c.T763C	p.S255P	.	.	100	3	173	0	.	733
AKAP6	9472	hgsc.bcm.edu	37	14	33201661	33201661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP6	NM_004274	exon10	c.G3002T	p.R1001L	.	.	83	4	89	0	.	733
AKAP8	10270	hgsc.bcm.edu;bcgsc.ca	37	19	15485443	15485443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKAP8	NM_005858	exon3	c.C62T	p.A21V	.	.	94	5	177	0	.	290
AKD1	221264	hgsc.bcm.edu	37	6	109837261	109837261	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AKD1	NM_001145128	exon31	c.T3864C	p.Y1288Y	.	.	95	4	184	0	.	91
ALG2	85365	hgsc.bcm.edu	37	9	101980977	101980977	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	ALG2,NS,carcinoma,0	ALG2	NM_033087	exon2	c.G490T	p.E164X	.	.	48	2	79	0	.	92
ALG2	85365	hgsc.bcm.edu;bcgsc.ca	37	9	101980978	101980978	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG2	NM_033087	exon2	c.G489A	p.E163E	.	.	47	4	79	0	.	92
ALG8	79053	hgsc.bcm.edu;bcgsc.ca	37	11	77832116	77832116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALG8	NM_024079	exon4	c.T473C	p.V158A	.	.	98	5	148	0	.	93
ALS2CR8	79800	hgsc.bcm.edu	37	2	203817314	203817314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ALS2CR8	NM_024744	exon6	c.G339T	p.Q113H	.	.	61	4	114	0	.	136
AMELX	265	hgsc.bcm.edu	37	X	11316394	11316394	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMELX	NM_182680	exon5	c.A183G	p.P61P	.	.	77	4	103	0	.	130
AMPD3	272	hgsc.bcm.edu	37	11	10514945	10514945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMPD3	NM_000480	exon7	c.T1016C	p.L339P	.	.	85	4	147	0	.	291
AMPH	273	hgsc.bcm.edu	37	7	38457492	38457492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AMPH	NM_001635	exon17	c.T1331C	p.V444A	.	.	168	8	245	0	.	95
ANAPC2	29882	hgsc.bcm.edu	37	9	140082406	140082406	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANAPC2	NM_013366	exon2	c.T267C	p.P89P	.	.	98	4	166	0	.	227
ANAPC5	51433	hgsc.bcm.edu	37	12	121746389	121746389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANAPC5	NM_016237	exon17	c.A2162G	p.Y721C	.	.	108	5	131	0	.	290
ANGEL2	90806	hgsc.bcm.edu	37	1	213178764	213178764	+	Missense_Mutation	SNP	T	T	C	rs144576191		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANGEL2	NM_144567	exon5	c.A745G	p.R249G	.	.	91	4	60	0	T|1.000;C|0.000	68
ANKDD1A	348094	bcgsc.ca	37	15	65226433	65226433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKDD1A	NM_182703	exon9	c.A866G	p.H289R	.	.	47	4	73	0	.	69
ANKRD11	29123	hgsc.bcm.edu	37	16	89346917	89346917	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD11	NM_001256183	exon9	c.G6033A	p.S2011S	.	.	44	4	58	0	.	139
ANKRD13D	338692	hgsc.bcm.edu	37	11	67068507	67068507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD13D	NM_207354	exon11	c.G1120A	p.G374S	.	.	100	4	137	0	.	91
ANKRD29	147463	hgsc.bcm.edu	37	18	21218861	21218861	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKRD29	NM_173505	exon4	c.C282A	p.V94V	.	.	98	4	145	0	.	156
ANKRD36BP2	645784	broad.mit.edu	37	2	89103957	89103957	+	RNA	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	1149	10	1642	1	.	.
ANKZF1	55139	hgsc.bcm.edu	37	2	220097005	220097005	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANKZF1	NM_001042410	exon4	c.G285A	p.W95X	.	.	101	5	156	0	.	92
ANO9	338440	hgsc.bcm.edu	37	11	420547	420547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANO9	NM_001012302	exon19	c.A1702G	p.S568G	.	.	80	4	142	0	.	227
ANXA7	310	hgsc.bcm.edu;bcgsc.ca	37	10	75156931	75156931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ANXA7	NM_004034	exon4	c.C361A	p.P121T	.	.	56	4	61	0	.	516
AOX1	316	hgsc.bcm.edu	37	2	201502979	201502979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AOX1	NM_001159	exon23	c.A2522G	p.D841G	.	.	91	4	141	0	.	96
AP1G2	8906	hgsc.bcm.edu	37	14	24035857	24035857	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP1G2	NM_003917	exon3	c.A243T	p.T81T	.	.	77	4	97	0	.	45
AP2A1	160	hgsc.bcm.edu	37	19	50303262	50303262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP2A1	NM_130787	exon11	c.T1310C	p.V437A	.	.	98	4	163	0	.	92
AP2A2	161	hgsc.bcm.edu	37	11	1009727	1009727	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AP2A2	NM_001242837	exon21	c.T2655C	p.N885N	.	.	96	4	136	0	.	90
AP3B2	8120	hgsc.bcm.edu	37	15	83331514	83331514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	AP3B2,NS,carcinoma,+1	AP3B2	NM_004644	exon22	c.T2708C	p.I903T	.	.	69	4	156	0	.	94
APLP1	333	hgsc.bcm.edu	37	19	36368656	36368656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APLP1	NM_005166	exon12	c.A1481T	p.E494V	.	.	75	4	68	0	.	92
APOA1BP	128240	hgsc.bcm.edu	37	1	156563722	156563722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOA1BP	NM_144772	exon6	c.T713C	p.L238P	.	.	143	6	135	0	.	90
APOD	347	hgsc.bcm.edu;bcgsc.ca	37	3	195306237	195306237	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	APOD	NM_001647	exon2	c.G96T	p.P32P	.	.	45	4	89	0	.	516
ARAF	369	hgsc.bcm.edu	37	X	47426698	47426698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARAF	NM_001256196	exon10	c.A952G	p.R318G	.	.	125	5	116	0	.	1557
ARF5	381	bcgsc.ca	37	7	127228598	127228598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARF5	NM_001662	exon1	c.A46G	p.K16E	.	.	35	4	27	0	.	228
ARG2	384	hgsc.bcm.edu	37	14	68086759	68086759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARG2	NM_001172	exon1	c.C65A	p.S22Y	.	.	86	4	103	0	.	90
ARHGAP18	93663	hgsc.bcm.edu;bcgsc.ca	37	6	129937450	129937450	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGAP18	NM_033515	exon8	c.953-2A>G	.	.	.	86	4	167	0	.	230
ARHGEF11	9826	hgsc.bcm.edu	37	1	156954223	156954223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF11	NM_014784	exon3	c.T131C	p.V44A	.	.	100	4	87	0	.	233
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153840493	153840493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF26	NM_001251962	exon2	c.A712G	p.N238D	.	.	56	4	63	0	.	47
ARHGEF9	23229	hgsc.bcm.edu	37	X	62917040	62917040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARHGEF9	NM_015185	exon4	c.C526A	p.H176N	.	.	129	6	117	0	.	233
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094372	27094372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARID1A	NM_006015	exon11	c.A3080G	p.Y1027C	.	.	223	62	348	0	.	584
ARID1B	57492	broad.mit.edu	37	6	157256624	157256624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARID1B	NM_020732	exon5	c.A1951G	p.T651A	.	.	354	6	526	2	.	154
ARPC2	10109	hgsc.bcm.edu	37	2	219114132	219114132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARPC2	NM_005731	exon8	c.T722C	p.I241T	.	.	110	5	129	0	.	91
ARSA	410	hgsc.bcm.edu	37	22	51063861	51063861	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARSA	NM_001085426	exon9	c.T1242C	p.P414P	.	.	91	5	147	0	.	92
ARSD	414	hgsc.bcm.edu	37	X	2825611	2825611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ARSD	NM_001669	exon10	c.T1483C	p.C495R	.	.	99	5	73	0	.	130
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	119858432	119858432	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ASTN2	NM_014010	exon5	c.1016-2A>T	.	.	.	81	25	134	0	.	161
ATAD1	84896	hgsc.bcm.edu	37	10	89530707	89530707	+	Splice_Site	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATAD1	NM_032810	exon8	c.780+2T>A	.	.	.	98	4	118	0	.	578
ATF7IP2	80063	bcgsc.ca	37	16	10575772	10575772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATF7IP2	NM_024997	exon12	c.A1715G	p.D572G	.	.	160	6	218	0	.	186
ATG9A	79065	hgsc.bcm.edu	37	2	220088702	220088702	+	Missense_Mutation	SNP	C	C	A	rs186498321	by1000genomes;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATG9A	NM_001077198	exon9	c.G1308T	p.Q436H	.	.	101	5	159	0	C|0.999;T|0.001	91
ATL2	64225	bcgsc.ca	37	2	38546081	38546081	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATL2	NM_001135673	exon3	c.A444G	p.T148T	.	.	189	6	247	0	.	228
ATP13A4	84239	bcgsc.ca	37	3	193272544	193272544	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATP13A4	NM_032279	exon1	c.A45G	p.G15G	.	.	138	8	263	1	.	92
ATP7A	538	hgsc.bcm.edu;bcgsc.ca	37	X	77258577	77258577	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATP7A	NM_000052	exon6	c.T1551C	p.Y517Y	.	.	82	4	113	0	.	130
ATRNL1	26033	hgsc.bcm.edu	37	10	117093838	117093838	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATRNL1	NM_207303	exon19	c.C3084T	p.C1028C	.	.	100	4	132	0	.	96
ATXN1L	342371	bcgsc.ca	37	16	71884497	71884497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001137675	exon3	c.A854G	p.E285G	.	.	131	5	259	0	.	.
ATXN7	6314	bcgsc.ca	37	3	63898883	63898883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATXN7	NM_000333	exon4	c.A376G	p.M126V	.	.	134	5	250	0	.	90
ATXN7L1	222255	hgsc.bcm.edu	37	7	105260739	105260739	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ATXN7L1	NM_020725	exon9	c.A1425G	p.G475G	.	.	86	5	189	0	.	90
AVIL	10677	hgsc.bcm.edu	37	12	58191678	58191678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AVIL	NM_006576	exon19	c.A2447G	p.K816R	.	.	84	4	99	0	.	514
AVL9	23080	hgsc.bcm.edu	37	7	32598745	32598745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AVL9	NM_015060	exon10	c.A884G	p.E295G	.	.	85	5	90	0	.	90
AXIN2	8313	hgsc.bcm.edu	37	17	63534322	63534322	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AXIN2	NM_004655	exon5	c.A1199G	p.E400G	.	.	99	4	132	0	.	658
AXL	558	hgsc.bcm.edu	37	19	41762466	41762466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	AXL	NM_021913	exon18	c.A2146G	p.I716V	.	.	121	5	192	0	.	1403
B3GNT9	84752	hgsc.bcm.edu	37	16	67183637	67183637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033309	exon2	c.A752G	p.D251G	.	.	86	4	147	0	.	.
B3GNTL1	146712	bcgsc.ca	37	17	80904837	80904837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	B3GNTL1	NM_001009905	exon12	c.A1028G	p.E343G	.	.	76	5	142	0	.	92
B4GALNT3	283358	hgsc.bcm.edu	37	12	662900	662900	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	B4GALNT3	NM_173593	exon14	c.A1811G	p.E604G	.	.	121	5	147	0	.	92
BAG4	9530	hgsc.bcm.edu;bcgsc.ca	37	8	38067825	38067825	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG4	NM_004874	exon5	c.A1188G	p.E396E	.	.	93	4	235	0	.	228
BAG5	9529	hgsc.bcm.edu	37	14	104026246	104026246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAG5	NM_001015049	exon2	c.A1379G	p.K460R	.	.	88	4	148	0	.	229
BAIAP3	8938	hgsc.bcm.edu	37	16	1388575	1388575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAIAP3	NM_003933	exon2	c.A130G	p.S44G	.	.	178	7	286	0	.	91
BARHL2	343472	hgsc.bcm.edu	37	1	91182635	91182635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BARHL2	NM_020063	exon1	c.A118G	p.T40A	.	.	98	5	129	0	.	91
BAZ2A	11176	hgsc.bcm.edu	37	12	56998513	56998513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon15	c.G2825A	p.R942H	.	.	85	4	142	0	.	22
BAZ2A	11176	hgsc.bcm.edu	37	12	56999021	56999021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon14	c.T2590C	p.F864L	.	.	97	4	183	0	.	22
BAZ2A	11176	hgsc.bcm.edu	37	12	57005366	57005366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2A	NM_013449	exon7	c.T1667C	p.L556P	.	.	117	5	209	0	.	22
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160242972	160242972	+	Silent	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BAZ2B	NM_013450	exon22	c.T3363G	p.L1121L	.	.	153	34	255	0	.	94
BCAM	4059	bcgsc.ca	37	19	45322317	45322317	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BCAM	NM_001013257	exon11	c.G1341T	p.S447S	.	.	59	4	130	1	.	91
BCAR3	8412	bcgsc.ca	37	1	94054842	94054842	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BCAR3	NM_001261409	exon5	c.A621G	p.R207R	.	.	62	5	79	1	.	228
BCL2L15	440603	bcgsc.ca	37	1	114423725	114423725	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BCL2L15	.	.	.	.	.	.	196	6	415	0	.	69
BCLAF1	9774	broad.mit.edu;bcgsc.ca	37	6	136597059	136597059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BCLAF1	NM_014739	exon5	c.T1604A	p.I535N	.	.	344	12	487	1	.	228
BECN1	8678	bcgsc.ca	37	17	40965976	40965976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BECN1	NM_003766	exon10	c.A1031G	p.D344G	.	.	85	6	175	2	.	228
BET1L	51272	hgsc.bcm.edu;bcgsc.ca	37	11	206034	206034	+	Missense_Mutation	SNP	G	G	T	rs199668338	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BET1L	NM_016526	exon2	c.C29A	p.P10Q	.	.	70	4	119	0	.	514
BIVM-ERCC5	0	bcgsc.ca	37	13	103491049	103491049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001204425	exon8	c.G1178A	p.R393Q	.	.	150	5	273	1	.	.
BMP7	655	hgsc.bcm.edu	37	20	55758796	55758796	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BMP7	NM_001719	exon4	c.C940A	p.R314R	.	.	48	4	70	0	.	187
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BMS1	NM_014753	exon16	c.G2634T	p.E878D	.	.	81	4	71	12	.	93
BPTF	2186	bcgsc.ca	37	17	65887976	65887976	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_004459	exon7	c.G2259T	p.S753S	.	.	107	4	161	0	.	94
BPTF	2186	hgsc.bcm.edu	37	17	65850816	65850816	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_004459	exon2	c.T1374C	p.H458H	.	.	94	4	134	0	.	94
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	65942113	65942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BPTF	NM_182641	exon21	c.C7289T	p.P2430L	.	.	149	31	198	0	.	94
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	41246557	41246557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BRCA1	NM_007300	exon10	c.A991G	p.R331G	.	.	116	5	154	0	.	3415
BRD1	23774	hgsc.bcm.edu	37	22	50181097	50181097	+	Missense_Mutation	SNP	C	C	A	rs140147452	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BRD1	NM_014577	exon7	c.G2405T	p.R802L	.	.	59	4	81	0	C|1.000;T|0.000	91
BTN3A1	11119	hgsc.bcm.edu	37	6	26413707	26413707	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.T1329C	p.T443T	.	.	65	4	132	0	.	92
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26413697	26413697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	BTN3A1	NM_007048	exon10	c.A1319C	p.K440T	.	.	60	15	109	0	.	92
C10orf54	64115	hgsc.bcm.edu	37	10	73511520	73511520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C10orf54	NM_022153	exon6	c.A803G	p.Q268R	.	.	76	4	87	0	.	515
C10orf90	118611	bcgsc.ca	37	10	128202439	128202439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C10orf90	NM_001004298	exon2	c.A92G	p.E31G	.	.	151	5	244	0	.	92
C12orf44	60673	hgsc.bcm.edu	37	12	52470974	52470974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C12orf44	NM_021934	exon4	c.A657G	p.X219W	.	.	71	4	111	0	.	90
C14orf159	80017	hgsc.bcm.edu	37	14	91639751	91639751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C14orf159	NM_001102368	exon6	c.A575G	p.E192G	.	.	90	4	96	0	.	92
C14orf177	283598	hgsc.bcm.edu	37	14	99183503	99183503	+	Silent	SNP	G	G	T	rs149397774	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C14orf177	NM_182560	exon4	c.G270T	p.G90G	.	.	112	5	198	0	G|1.000;A|0.000	90
C16orf71	146562	hgsc.bcm.edu	37	16	4793141	4793141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf71	NM_139170	exon5	c.C881A	p.A294D	.	.	49	4	65	0	.	68
C16orf71	146562	hgsc.bcm.edu;bcgsc.ca	37	16	4793096	4793096	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf71	NM_139170	exon5	c.A836G	p.E279G	.	.	86	4	126	0	.	68
C16orf80	29105	hgsc.bcm.edu;bcgsc.ca	37	16	58148804	58148804	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C16orf80	NM_013242	exon5	c.C486A	p.I162I	.	.	70	4	110	0	.	226
C16orf96	342346	hgsc.bcm.edu	37	16	4606555	4606555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001145011	exon1	c.A65G	p.N22S	.	.	84	4	94	0	.	.
C18orf25	147339	bcgsc.ca	37	18	43795775	43795775	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C18orf25	.	.	.	.	.	.	48	4	70	0	.	515
C19orf25	148223	hgsc.bcm.edu	37	19	1478838	1478838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152482	exon2	c.A65G	p.Q22R	.	.	79	4	157	0	.	.
C19orf80	55908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11352157	11352157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_018687	exon3	c.C496T	p.L166F	.	.	72	18	130	0	.	.
C1orf127	148345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11009710	11009710	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf127	NM_001170754	exon11	c.C1261T	p.L421L	.	.	132	26	133	0	.	91
C1orf141	400757	bcgsc.ca	37	1	67591582	67591582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf141	NM_001276352	exon4	c.T86C	p.L29P	.	.	95	4	138	1	.	91
C1orf174	339448	hgsc.bcm.edu	37	1	3807353	3807353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf174	NM_207356	exon3	c.C398A	p.A133E	.	.	99	4	138	0	.	68
C1orf87	127795	hgsc.bcm.edu	37	1	60491090	60491090	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1orf87	NM_152377	exon8	c.T1110C	p.G370G	.	.	92	5	156	0	.	154
C1QTNF1	114897	hgsc.bcm.edu	37	17	77043987	77043987	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C1QTNF1	NM_030968	exon4	c.G663A	p.L221L	.	.	95	4	155	0	.	91
C20orf26	26074	broad.mit.edu	37	20	20340941	20340941	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C20orf26	NM_015585	exon27	c.A3601T	p.K1201X	.	.	156	5	206	0	.	94
C20orf96	140680	hgsc.bcm.edu	37	20	259904	259904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C20orf96	NM_153269	exon5	c.T374C	p.L125P	.	.	86	4	121	0	.	90
C2orf74	339804	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61390252	61390252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001143959	exon3	c.G296A	p.S99N	.	.	95	29	164	1	.	.
C3AR1	719	bcgsc.ca	37	12	8212199	8212199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C3AR1	NM_004054	exon2	c.A583G	p.R195G	.	.	134	5	212	1	.	227
C5	727	bcgsc.ca	37	9	123779720	123779720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C5	NM_001735	exon14	c.A1786G	p.M596V	.	.	124	5	217	2	.	92
C6orf165	154313	hgsc.bcm.edu;bcgsc.ca	37	6	88123541	88123541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	C6orf165,brain,glioma,-1	C6orf165	NM_001031743	exon4	c.G206T	p.R69L	.	.	102	5	135	1	.	90
C6orf211	79624	hgsc.bcm.edu	37	6	151789989	151789989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf211	NM_024573	exon5	c.A1070G	p.Q357R	.	.	79	4	131	0	.	90
C6orf222	389384	broad.mit.edu;bcgsc.ca	37	6	36297976	36297976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf222	NM_001010903	exon2	c.C492A	p.H164Q	.	.	308	30	450	2	.	93
C6orf70	55780	bcgsc.ca	37	6	170176111	170176111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C6orf70	NM_018341	exon15	c.G1470A	p.M490I	.	.	188	6	253	1	.	91
C7orf63	79846	bcgsc.ca	37	7	89897673	89897673	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C7orf63	NM_001039706	exon6	c.A507G	p.A169A	.	.	71	4	152	1	.	91
C7orf72	100130988	bcgsc.ca	37	7	50180909	50180909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C7orf72	NM_001161834	exon7	c.T1010C	p.V337A	.	.	136	5	172	0	.	23
C8A	731	hgsc.bcm.edu	37	1	57378098	57378098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	C8A	NM_000562	exon10	c.T1403C	p.L468P	.	.	79	4	104	0	.	92
CABIN1	23523	hgsc.bcm.edu;bcgsc.ca	37	22	24455827	24455827	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABIN1	NM_001201429	exon10	c.1249+1G>A	.	.	.	72	4	132	0	.	94
CABLES1	91768	hgsc.bcm.edu	37	18	20774473	20774473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CABLES1	NM_001100619	exon3	c.A979G	p.N327D	.	.	94	4	146	0	.	522
CACNA1B	774	hgsc.bcm.edu	37	9	140777329	140777329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1B	NM_001243812	exon3	c.T524C	p.L175P	.	.	65	4	155	0	.	138
CACNA1C	775	bcgsc.ca	37	12	2595417	2595417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1C	NM_001129831	exon6	c.A905G	p.E302G	.	.	105	6	186	1	.	34
CACNA1F	778	hgsc.bcm.edu	37	X	49061725	49061725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1F	NM_005183	exon48	c.A5806G	p.M1936V	.	.	88	5	90	0	.	176
CACNA1H	8912	bcgsc.ca	37	16	1268406	1268406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1H	NM_021098	exon33	c.A5642G	p.E1881G	.	.	116	5	173	1	.	67
CACNA1I	8911	hgsc.bcm.edu	37	22	40068952	40068952	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CACNA1I	NM_021096	exon28	c.4650-2A>G	.	.	.	91	4	160	0	.	135
CAD	790	bcgsc.ca	37	2	27446441	27446441	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAD	NM_004341	exon7	c.C820A	p.R274R	.	.	135	5	238	0	.	295
CAGE1	285782	hgsc.bcm.edu	37	6	7379230	7379230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAGE1	NM_001170693	exon4	c.A307G	p.T103A	.	.	54	4	79	0	.	22
CALCR	799	broad.mit.edu;bcgsc.ca	37	7	93108744	93108744	+	Missense_Mutation	SNP	C	C	T	rs142718250	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CALCR	NM_001164737	exon5	c.G181A	p.V61I	.	.	684	24	1043	3	C|0.999;T|0.001	664
CAMK2D	817	bcgsc.ca	37	4	114421620	114421620	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAMK2D	NM_172114	exon15	c.A1074G	p.K358K	.	.	130	5	167	0	.	334
CAMKMT	79823	hgsc.bcm.edu	37	2	44931461	44931461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAMKMT	NM_024766	exon4	c.T416C	p.L139P	.	.	85	4	104	0	.	90
CAMSAP1	157922	hgsc.bcm.edu	37	9	138773507	138773507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CAMSAP1	NM_015447	exon3	c.A557G	p.E186G	.	.	99	4	174	0	.	92
CANX	821	broad.mit.edu;bcgsc.ca	37	5	179136035	179136035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CANX	NM_001746	exon6	c.T503C	p.L168P	.	.	359	9	449	1	.	90
CASC5	57082	hgsc.bcm.edu	37	15	40914165	40914165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASC5	NM_170589	exon11	c.C1781T	p.S594L	.	.	95	5	130	0	.	660
CASKIN1	57524	hgsc.bcm.edu	37	16	2233896	2233896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASKIN1	NM_020764	exon15	c.T1463C	p.L488P	.	.	72	5	103	0	.	92
CASS4	57091	hgsc.bcm.edu	37	20	55027971	55027971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CASS4	NM_020356	exon5	c.T1739C	p.V580A	.	.	111	7	163	0	.	25
CBFA2T3	863	hgsc.bcm.edu	37	16	88958364	88958364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CBFA2T3	NM_005187	exon5	c.A637G	p.I213V	.	.	63	4	77	0	.	722
CBX6	23466	hgsc.bcm.edu	37	22	39268185	39268185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CBX6	NM_014292	exon1	c.C11A	p.S4Y	.	.	78	4	102	0	.	226
CC2D1B	200014	hgsc.bcm.edu	37	1	52825005	52825005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CC2D1B	NM_032449	exon10	c.A1043G	p.Q348R	.	.	92	4	157	0	.	92
CC2D2A	57545	hgsc.bcm.edu	37	4	15572065	15572065	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CC2D2A	NM_001080522	exon29	c.A3540G	p.R1180R	.	.	99	4	194	0	.	25
CCDC108	255101	hgsc.bcm.edu	37	2	219870885	219870885	+	Missense_Mutation	SNP	T	T	C	rs200373351		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC108	NM_194302	exon31	c.A4780G	p.T1594A	.	.	120	5	201	0	T|0.999;C|0.000	94
CCDC164	92749	hgsc.bcm.edu	37	2	26652560	26652560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC164	NM_145038	exon5	c.T605C	p.L202P	.	.	94	4	137	0	.	92
CCDC171	203238	hgsc.bcm.edu	37	9	15784674	15784674	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_173550	exon21	c.T3249C	p.T1083T	.	.	82	4	149	0	.	.
CCDC27	148870	hgsc.bcm.edu	37	1	3683876	3683876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC27	NM_152492	exon10	c.A1610G	p.Q537R	.	.	147	7	204	0	.	91
CCDC90B	60492	hgsc.bcm.edu	37	11	82985021	82985021	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCDC90B	NM_021825	exon5	c.A441G	p.E147E	.	.	99	4	182	0	.	90
CCHCR1	54535	hgsc.bcm.edu	37	6	31125311	31125311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCHCR1	NM_001105563	exon1	c.A67G	p.M23V	.	.	97	4	133	0	.	91
CCNB2	9133	hgsc.bcm.edu	37	15	59409529	59409529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCNB2	NM_004701	exon7	c.T937C	p.S313P	.	.	64	4	111	0	.	226
CCNL1	57018	hgsc.bcm.edu	37	3	156877742	156877742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CCNL1	NM_020307	exon1	c.T142C	p.S48P	.	.	163	7	230	0	.	659
CD5	921	hgsc.bcm.edu	37	11	60890419	60890419	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CD5	NM_014207	exon7	c.G1140A	p.V380V	.	.	96	4	144	0	.	91
CDCA2	157313	hgsc.bcm.edu	37	8	25327485	25327485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDCA2	NM_152562	exon7	c.A809G	p.E270G	.	.	82	4	180	0	.	90
CDCA7L	55536	hgsc.bcm.edu	37	7	21946043	21946043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDCA7L	NM_018719	exon6	c.A785G	p.E262G	.	.	66	4	78	0	.	90
CDHR1	92211	hgsc.bcm.edu	37	10	85968520	85968520	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDHR1	NM_001171971	exon12	c.A1203G	p.G401G	.	.	100	4	169	0	.	91
CDKL2	8999	hgsc.bcm.edu	37	4	76507088	76507088	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDKL2	NM_003948	exon11	c.A1437G	p.S479S	.	.	87	4	144	0	.	454
CDRT4	284040	hgsc.bcm.edu	37	17	15341250	15341250	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDRT4	NM_001204477	exon4	c.C299A	p.S100X	.	.	121	5	172	0	.	90
CDSN	1041	hgsc.bcm.edu	37	6	31084099	31084099	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CDSN	NM_001264	exon2	c.C1293T	p.F431F	.	.	82	5	132	0	.	92
CELF3	11189	broad.mit.edu	37	1	151677585	151677585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CELF3	NM_007185	exon12	c.T1330C	p.F444L	.	.	339	8	306	0	.	91
CELF6	60677	bcgsc.ca	37	15	72582487	72582487	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CELF6	NM_001172684	exon4	c.T504C	p.S168S	.	.	78	4	121	1	.	154
CELSR1	9620	hgsc.bcm.edu	37	22	46860155	46860155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CELSR1	NM_014246	exon2	c.T3632C	p.L1211P	.	.	100	4	149	0	.	525
CENPE	1062	hgsc.bcm.edu;bcgsc.ca	37	4	104116362	104116362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CENPE	NM_001813	exon5	c.T386C	p.V129A	.	.	128	6	155	0	.	277
CEP128	145508	broad.mit.edu	37	14	81223238	81223238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CEP128	NM_152446	exon17	c.A2611G	p.K871E	.	.	344	6	603	2	.	91
CEP170B	283638	hgsc.bcm.edu;bcgsc.ca	37	14	105349493	105349493	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001112726	exon8	c.C699T	p.T233T	.	.	70	4	105	0	.	.
CFH	3075	broad.mit.edu;mdanderson.org	37	1	196715034	196715034	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CFH	NM_000186	exon21	c.C3398A	p.S1133X	.	.	919	112	709	1	.	566
CFI	3426	bcgsc.ca	37	4	110682675	110682675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CFI	NM_000204	exon4	c.C656T	p.A219V	.	.	157	6	195	0	.	90
CGRRF1	10668	bcgsc.ca	37	14	54997639	54997639	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CGRRF1	NM_006568	exon4	c.A441G	p.K147K	.	.	166	5	244	1	.	91
CHD7	55636	hgsc.bcm.edu	37	8	61765123	61765123	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHD7	NM_017780	exon30	c.T5961C	p.P1987P	.	.	102	5	92	0	.	141
CHDC2	286464	bcgsc.ca	37	X	36064999	36064999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	203	6	208	0	.	.
CHDH	55349	bcgsc.ca	37	3	53857770	53857770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHDH	NM_018397	exon3	c.A266G	p.H89R	.	.	40	4	49	0	.	91
CHRNA4	1137	hgsc.bcm.edu	37	20	61981085	61981085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHRNA4	NM_000744	exon5	c.C1678A	p.L560M	.	.	87	4	61	0	.	91
CHRNB1	1140	hgsc.bcm.edu	37	17	7359909	7359909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHRNB1	NM_000747	exon11	c.A1373G	p.E458G	.	.	78	3	121	0	.	92
CHTF18	63922	hgsc.bcm.edu	37	16	843038	843038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CHTF18	NM_022092	exon13	c.A1645G	p.I549V	.	.	103	5	97	0	.	227
CILP	8483	hgsc.bcm.edu	37	15	65490900	65490900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CILP	NM_003613	exon9	c.A1724G	p.K575R	.	.	77	4	126	0	.	97
CIT	11113	hgsc.bcm.edu;bcgsc.ca	37	12	120214542	120214542	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CIT	NM_001206999	exon14	c.A1770G	p.R590R	.	.	69	4	108	0	.	399
CKAP5	9793	hgsc.bcm.edu	37	11	46797922	46797922	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CKAP5	NM_001008938	exon24	c.A2874G	p.R958R	.	.	98	4	127	0	.	92
CLDN23	137075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8560187	8560187	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_194284	exon1	c.G279T	p.L93L	.	.	17	6	17	0	.	.
CLEC16A	23274	hgsc.bcm.edu	37	16	11114058	11114058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLEC16A	NM_015226	exon11	c.A1312G	p.M438V	.	.	85	4	137	0	.	92
CLIP1	6249	ucsc.edu;bcgsc.ca	37	12	122773083	122773083	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLIP1	NM_001247997	exon21	c.A3600G	p.E1200E	.	.	33	4	64	0	.	155
CLN3	1201	hgsc.bcm.edu	37	16	28489132	28489132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CLN3	NM_001042432	exon15	c.T1123C	p.F375L	.	.	71	4	113	0	.	90
CLUH	23277	hgsc.bcm.edu	37	17	2605026	2605026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015229	exon5	c.G511A	p.G171R	.	.	79	4	95	0	.	.
CNGB1	1258	hgsc.bcm.edu	37	16	57954321	57954321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNGB1	NM_001297	exon19	c.G1771T	p.V591F	.	.	77	4	111	0	.	137
CNKSR3	154043	hgsc.bcm.edu	37	6	154762454	154762454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNKSR3	NM_173515	exon4	c.G479A	p.C160Y	.	.	86	4	123	0	.	26
CNOT1	23019	hgsc.bcm.edu	37	16	58620483	58620483	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNOT1	NM_206999	exon7	c.A603G	p.E201E	.	.	95	4	194	0	.	95
CNR1	1268	hgsc.bcm.edu	37	6	88854629	88854629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CNR1	NM_001160258	exon4	c.T365C	p.L122P	.	.	73	5	107	0	.	92
COBL	23242	hgsc.bcm.edu	37	7	51111115	51111115	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COBL	NM_015198	exon8	c.G1371A	p.L457L	.	.	87	4	167	0	.	95
COL11A1	1301	hgsc.bcm.edu	37	1	103428283	103428283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL11A1	NM_080629	exon39	c.C2986T	p.R996C	.	.	166	7	273	0	.	586
COL16A1	1307	hgsc.bcm.edu	37	1	32149324	32149324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL16A1	NM_001856	exon34	c.G2363A	p.G788E	.	.	74	4	111	0	.	98
COL22A1	169044	broad.mit.edu	37	8	139601579	139601579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL22A1	NM_152888	exon65	c.G4798A	p.G1600S	.	.	165	4	194	0	.	103
COL27A1	85301	hgsc.bcm.edu	37	9	116931466	116931466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL27A1	NM_032888	exon3	c.A1631G	p.K544R	.	.	87	4	115	0	.	94
COL4A4	1286	bcgsc.ca	37	2	227958947	227958947	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL4A4	NM_000092	exon20	c.A1263G	p.E421E	.	.	123	6	143	2	.	142
COL5A2	1290	hgsc.bcm.edu;bcgsc.ca	37	2	189950498	189950498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL5A2	NM_000393	exon10	c.G691A	p.G231S	.	.	55	4	56	0	.	92
COL6A3	1293	hgsc.bcm.edu	37	2	238270467	238270467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COL6A3	NM_004369	exon15	c.T6071C	p.I2024T	.	.	73	4	116	0	.	526
COMMD5	28991	hgsc.bcm.edu	37	8	146076649	146076649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COMMD5	NM_001081004	exon2	c.G75T	p.L25F	.	.	69	11	91	0	.	91
COMMD5	28991	hgsc.bcm.edu	37	8	146076649	146076650	+	In_Frame_Ins	INS	-	-	AAGAAACTCACTCGGCCA	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COMMD5	NM_001081004	exon2	c.75_76insTGGCCGAGTGAGTTTCTT	p.L25delinsFGRVSFL	.	.	69	6	91	0	.	91
COX1	5742	bcgsc.ca	37	MT	7334	7334	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	ENST00000361624	exon1	c.T1431C	p.A477A	.	.	35	4	93	0	.	.
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	7191	7191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	ENST00000361624	exon1	c.T1288C	p.F430L	.	.	71	6	97	1	.	.
COX5B	1329	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	98262581	98262581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	COX5B	NM_001862	exon1	c.C32T	p.T11M	.	.	44	4	51	0	.	226
CPNE1	8904	hgsc.bcm.edu	37	20	34215233	34215233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE1	NM_003915	exon14	c.C1220T	p.A407V	.	.	120	5	141	0	.	91
CPNE2	221184	hgsc.bcm.edu	37	16	57153527	57153527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE2	NM_152727	exon7	c.T646C	p.S216P	.	.	123	5	213	0	.	91
CPNE5	57699	bcgsc.ca	37	6	36766005	36766005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE5	NM_020939	exon6	c.A341G	p.Q114R	.	.	64	4	114	1	.	91
CPNE7	27132	hgsc.bcm.edu	37	16	89651220	89651220	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPNE7	NM_014427	exon7	c.C771T	p.Y257Y	.	.	54	5	69	0	.	90
CPT1B	1375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	51011460	51011460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CPT1B	NM_001145135	exon11	c.T1196C	p.F399S	.	.	42	4	62	0	.	116
CREBBP	1387	hgsc.bcm.edu	37	16	3788625	3788625	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CREBBP	NM_004380	exon26	c.T4329C	p.R1443R	.	.	89	4	102	0	.	1807
CRHBP	1393	hgsc.bcm.edu	37	5	76249911	76249911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRHBP	NM_001882	exon3	c.A233G	p.Q78R	.	.	99	5	190	0	.	90
CRIM1	51232	hgsc.bcm.edu;bcgsc.ca	37	2	36771541	36771541	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CRIM1	NM_016441	exon15	c.C2646A	p.T882T	.	.	90	5	119	0	.	118
CSE1L	1434	bcgsc.ca	37	20	47707328	47707328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSE1L	NM_001316	exon20	c.A2231G	p.D744G	.	.	236	8	371	2	.	290
CSF1R	1436	hgsc.bcm.edu	37	5	149434853	149434853	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSF1R	NM_005211	exon20	c.A2601G	p.K867K	.	.	89	4	101	0	.	2640
CSF1R	1436	hgsc.bcm.edu	37	5	149459693	149459693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSF1R	NM_005211	exon4	c.A514G	p.S172G	.	.	80	4	80	0	.	2640
CSMD1	64478	hgsc.bcm.edu	37	8	2824171	2824171	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSMD1	NM_033225	exon58	c.A9021G	p.E3007E	.	.	63	4	138	0	.	86
CSNK2A2	1459	hgsc.bcm.edu	37	16	58198047	58198047	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSNK2A2	NM_001896	exon11	c.T981C	p.P327P	.	.	71	4	87	0	.	790
CSRNP1	64651	hgsc.bcm.edu;bcgsc.ca	37	3	39184689	39184689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CSRNP1	NM_033027	exon5	c.T1627C	p.S543P	.	.	77	4	130	0	.	230
CST5	1473	hgsc.bcm.edu	37	20	23860202	23860202	+	Missense_Mutation	SNP	C	C	T	rs145163468		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CST5	NM_001900	exon1	c.G112A	p.D38N	.	.	92	3	131	0	C|1.000;T|0.000	90
CTDSPL	10217	hgsc.bcm.edu	37	3	38022326	38022326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CTDSPL	NM_001008392	exon8	c.T799C	p.Y267H	.	.	71	4	123	0	.	90
CTNNA2	1496	bcgsc.ca	37	2	80874821	80874821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CTNNA2	NM_004389	exon18	c.A2542G	p.T848A	.	.	210	6	286	2	.	368
CUX2	23316	hgsc.bcm.edu	37	12	111655742	111655742	+	Splice_Site	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CUX2	NM_015267	exon3	c.222+1G>A	.	.	.	90	4	113	0	.	140
CWF19L1	55280	hgsc.bcm.edu	37	10	101997942	101997942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CWF19L1	NM_018294	exon11	c.T1091C	p.L364P	.	.	125	5	191	0	.	90
CXCR7	57007	hgsc.bcm.edu	37	2	237489260	237489260	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CXCR7	NM_020311	exon2	c.A152T	p.Y51F	.	.	74	5	140	0	.	1145
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767561	105767561	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYLC2	NM_001340	exon5	c.T648C	p.D216D	.	.	724	183	1067	0	.	91
CYP26B1	56603	hgsc.bcm.edu	37	2	72359670	72359670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP26B1	NM_019885	exon6	c.G1225A	p.V409M	.	.	119	5	206	0	.	92
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674345	219674345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP27A1	NM_000784	exon2	c.G301A	p.G101R	.	.	75	20	70	0	.	91
CYP2R1	120227	hgsc.bcm.edu	37	11	14902277	14902277	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYP2R1	NM_024514	exon3	c.T405C	p.D135D	.	.	99	4	167	0	.	91
CYTH1	9267	hgsc.bcm.edu;bcgsc.ca	37	17	76695035	76695035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	CYTH1	NM_017456	exon8	c.T566C	p.L189P	.	.	157	7	220	0	.	228
DAB2IP	153090	hgsc.bcm.edu	37	9	124522560	124522560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAB2IP	NM_032552	exon6	c.A928G	p.T310A	.	.	81	4	134	0	.	91
DAB2IP	153090	hgsc.bcm.edu	37	9	124528986	124528986	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAB2IP	NM_032552	exon9	c.C1590T	p.T530T	.	.	97	4	166	0	.	91
DACH2	117154	hgsc.bcm.edu	37	X	86069730	86069730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	DACH2_ENST00000373131,NS,carcinoma,0	DACH2	NM_053281	exon10	c.A1577G	p.K526R	.	.	45	3	77	0	.	136
DAO	1610	hgsc.bcm.edu;bcgsc.ca	37	12	109294259	109294259	+	Missense_Mutation	SNP	G	G	A	rs4262766	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DAO	NM_001917	exon11	c.G992A	p.G331E	.	.	70	4	81	0	G|1.000;A|0.000	92
DCAF10	79269	hgsc.bcm.edu	37	9	37860046	37860046	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCAF10	NM_024345	exon6	c.A1167G	p.G389G	.	.	119	5	197	0	.	115
DCAF4	26094	hgsc.bcm.edu	37	14	73423159	73423159	+	Silent	SNP	C	C	T	rs150471266	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCAF4	NM_015604	exon13	c.C1245T	p.Y415Y	.	.	98	4	135	0	C|1.000;T|0.000	92
DCAF8	50717	hgsc.bcm.edu	37	1	160192562	160192562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCAF8	NM_015726	exon11	c.T1319C	p.V440A	.	.	118	5	99	0	.	92
DCD	117159	hgsc.bcm.edu	37	12	55042049	55042049	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCD	NM_053283	exon1	c.A39G	p.A13A	.	.	72	4	109	0	.	91
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155180908	155180908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCHS2	NM_017639	exon20	c.G5213A	p.G1738E	.	.	61	4	98	0	.	94
DCP2	167227	hgsc.bcm.edu	37	5	112349076	112349076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DCP2	NM_152624	exon11	c.A1158G	p.G386G	.	.	71	4	125	0	.	90
DDX6	1656	hgsc.bcm.edu;bcgsc.ca	37	11	118626140	118626140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DDX6	NM_004397	exon12	c.A1247G	p.E416G	.	.	86	5	142	0	.	659
DEDD2	162989	hgsc.bcm.edu	37	19	42703669	42703669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DEDD2	NM_133328	exon5	c.A902G	p.E301G	.	.	101	5	182	0	.	90
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185970912	185970912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKG	NM_001346	exon18	c.G1570A	p.D524N	.	.	69	7	111	0	.	714
DGKH	160851	hgsc.bcm.edu	37	13	42793388	42793388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKH	NM_001204504	exon28	c.A3236G	p.E1079G	.	.	80	4	130	0	.	652
DGKI	9162	hgsc.bcm.edu	37	7	137304620	137304620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DGKI	NM_004717	exon8	c.G943A	p.A315T	.	.	80	4	126	0	.	228
DHTKD1	55526	hgsc.bcm.edu;bcgsc.ca	37	10	12160885	12160885	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHTKD1	NM_018706	exon15	c.A2540G	p.Q847R	.	.	74	4	106	0	.	515
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	39042772	39042772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DHX57	NM_198963	exon20	c.T3497A	p.F1166Y	.	.	95	13	159	0	.	228
DIAPH1	1729	hgsc.bcm.edu	37	5	140908052	140908052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DIAPH1	NM_005219	exon23	c.A3116G	p.D1039G	.	.	99	4	134	0	.	91
DKK1	22943	hgsc.bcm.edu;bcgsc.ca	37	10	54074421	54074421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK1	NM_012242	exon1	c.C227A	p.T76N	.	.	52	4	117	0	.	1083
DKK3	27122	hgsc.bcm.edu	37	11	12020311	12020311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DKK3	NM_015881	exon4	c.A367G	p.T123A	.	.	114	5	159	0	.	721
DLK2	65989	hgsc.bcm.edu;bcgsc.ca	37	6	43419708	43419708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DLK2	NM_023932	exon5	c.A386G	p.E129G	.	.	49	4	83	0	.	68
DMD	1756	hgsc.bcm.edu	37	X	32509552	32509552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DMD	NM_004006	exon20	c.A2464G	p.R822G	.	.	84	4	89	0	.	265
DNAH17	8632	hgsc.bcm.edu	37	17	76450568	76450568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH17	NM_173628	exon64	c.C10390A	p.R3464S	.	.	101	5	150	0	.	142
DNAH3	55567	bcgsc.ca	37	16	21035986	21035986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon39	c.T5578C	p.W1860R	.	.	158	5	246	0	.	167
DNAH3	55567	hgsc.bcm.edu	37	16	21008757	21008757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon44	c.T6449C	p.V2150A	.	.	104	4	150	0	.	167
DNAH3	55567	hgsc.bcm.edu;bcgsc.ca	37	16	20974803	20974803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNAH3	NM_017539	exon53	c.A10403G	p.Q3468R	.	.	78	4	99	0	.	167
DNPEP	23549	hgsc.bcm.edu	37	2	220251108	220251108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DNPEP	NM_012100	exon5	c.A359G	p.Q120R	.	.	66	4	116	0	.	90
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94342288	94342288	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_014597	exon2	c.A1203G	p.E401E	.	.	547	135	850	0	.	.
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169508908	169508908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DOCK2	NM_004946	exon51	c.A5350G	p.S1784G	.	.	95	30	126	0	.	97
DOK7	285489	mdanderson.org	37	4	3494713	3494713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DOK7	NM_173660	exon7	c.A1000G	p.S334G	.	.	13	2	16	0	.	91
DPYSL3	1809	hgsc.bcm.edu	37	5	146773671	146773671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DPYSL3	NM_001197294	exon14	c.A1982G	p.E661G	.	.	113	6	94	0	.	91
DSE	29940	hgsc.bcm.edu	37	6	116757735	116757735	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSE	NM_001080976	exon6	c.G2104T	p.E702X	.	.	60	4	56	0	.	91
DSG4	147409	hgsc.bcm.edu	37	18	28968861	28968861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSG4	NM_001134453	exon5	c.C397T	p.R133W	.	.	117	5	160	0	.	177
DSP	1832	bcgsc.ca	37	6	7581393	7581393	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSP	NM_004415	exon23	c.T4970C	p.L1657P	.	.	94	5	132	2	.	518
DSPP	1834	bcgsc.ca	37	4	88536238	88536238	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DSPP	NM_014208	exon5	c.T2424C	p.D808D	.	.	464	23	581	13	.	90
DUOXA2	405753	hgsc.bcm.edu	37	15	45408394	45408394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DUOXA2	NM_207581	exon3	c.C278T	p.A93V	.	.	76	4	97	0	.	226
DUSP2	1844	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96809608	96809608	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	DUSP2	NM_004418	exon4	c.T899G	p.F300C	.	.	179	45	243	1	.	658
DZANK1	55184	hgsc.bcm.edu	37	20	18414338	18414338	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001099407	exon9	c.T819C	p.P273P	.	.	87	4	142	0	.	.
DZANK1	55184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	18407716	18407716	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001099407	exon10	c.C949T	p.Q317X	.	.	75	18	98	0	.	.
ECT2	1894	bcgsc.ca	37	3	172476855	172476855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ECT2	NM_001258315	exon6	c.A572G	p.E191G	.	.	127	5	197	0	.	724
EDA	1896	hgsc.bcm.edu	37	X	69247861	69247861	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EDA	NM_001399	exon4	c.A681G	p.G227G	.	.	82	4	66	0	.	195
EEPD1	80820	hgsc.bcm.edu	37	7	36194099	36194099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EEPD1	NM_030636	exon2	c.G166A	p.V56M	.	.	95	4	103	0	.	68
EFCAB13	124989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45451924	45451924	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152347	exon12	c.A964C	p.K322Q	.	.	167	45	336	1	.	.
EFCAB13	124989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45451912	45451912	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152347	exon12	c.A952C	p.K318Q	.	.	160	45	304	0	.	.
EHBP1L1	254102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65349836	65349836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHBP1L1	NM_001099409	exon9	c.G1693A	p.G565R	.	.	39	9	50	0	.	69
EHD2	30846	hgsc.bcm.edu	37	19	48219955	48219955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHD2	NM_014601	exon2	c.A86G	p.Y29C	.	.	80	4	118	0	.	92
EHMT2	10919	hgsc.bcm.edu	37	6	31848833	31848833	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EHMT2	NM_006709	exon26	c.T3234C	p.D1078D	.	.	90	4	118	0	.	91
EIF3A	8661	hgsc.bcm.edu	37	10	120801517	120801517	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3A	NM_003750	exon19	c.T3515A	p.L1172X	.	.	94	4	115	0	.	226
EIF3I	8668	hgsc.bcm.edu	37	1	32696740	32696740	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3I	NM_003757	exon11	c.T921C	p.G307G	.	.	84	4	117	0	.	69
EIF3K	27335	hgsc.bcm.edu	37	19	39111009	39111009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF3K	NM_013234	exon2	c.G92T	p.R31L	.	.	83	4	113	0	.	69
EIF4EBP2	1979	hgsc.bcm.edu	37	10	72164180	72164180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4EBP2	NM_004096	exon1	c.G23T	p.G8V	.	.	78	4	70	1	.	90
EIF4ENIF1	56478	hgsc.bcm.edu;bcgsc.ca	37	22	31851919	31851919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EIF4ENIF1	NM_019843	exon8	c.T1018C	p.W340R	.	.	104	5	129	0	.	91
ELANE	1991	hgsc.bcm.edu	37	19	855736	855736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELANE	NM_001972	exon4	c.T539C	p.L180P	.	.	87	4	126	0	.	91
ELMO3	79767	hgsc.bcm.edu	37	16	67235697	67235697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELMO3	NM_024712	exon11	c.G1130T	p.G377V	.	.	100	4	113	0	.	90
ELP3	55140	hgsc.bcm.edu	37	8	27964302	27964302	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ELP3	NM_018091	exon4	c.329+2T>A	.	.	.	111	5	251	0	.	90
EML3	256364	hgsc.bcm.edu;bcgsc.ca	37	11	62375693	62375693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EML3	NM_153265	exon10	c.A1186G	p.M396V	.	.	59	4	104	0	.	91
EML6	400954	broad.mit.edu;bcgsc.ca	37	2	55191769	55191769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001039753	exon37	c.A5393G	p.D1798G	.	.	194	6	299	0	.	.
EN2	2020	hgsc.bcm.edu	37	7	155255188	155255188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EN2	NM_001427	exon2	c.A808G	p.T270A	.	.	73	4	138	0	.	90
ENTPD2	954	hgsc.bcm.edu	37	9	139946769	139946769	+	Missense_Mutation	SNP	T	T	C	rs147614606	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ENTPD2	NM_203468	exon2	c.A149G	p.H50R	.	.	83	6	118	0	T|0.999;C|0.001	90
ENTPD3	956	hgsc.bcm.edu	37	3	40433587	40433587	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ENTPD3	NM_001248	exon3	c.G114A	p.V38V	.	.	101	5	158	0	.	91
EPB41L1	2036	hgsc.bcm.edu	37	20	34765929	34765929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPB41L1	NM_001258329	exon5	c.T398C	p.L133P	.	.	94	4	102	0	.	93
EPCAM	4072	hgsc.bcm.edu	37	2	47600664	47600664	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPCAM	NM_002354	exon2	c.C139T	p.Q47X	.	.	94	4	135	0	.	91
EPG5	57724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43528527	43528527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EPG5	NM_020964	exon6	c.A1513G	p.N505D	.	.	46	10	75	0	.	580
EPHA6	285220	hgsc.bcm.edu	37	3	96706219	96706219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	EPHA6,NS,carcinoma,-2	EPHA6	NM_001080448	exon3	c.A496G	p.T166A	.	.	91	4	117	0	.	1561
ERCC6L	54821	hgsc.bcm.edu	37	X	71426582	71426582	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ERCC6L	NM_017669	exon2	c.A2035G	p.T679A	.	.	85	4	79	0	.	93
ERI3	79033	hgsc.bcm.edu	37	1	44818544	44818544	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ERI3	NM_024066	exon2	c.T189C	p.L63L	.	.	92	5	169	0	.	92
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74014678	74014678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVPL	NM_001988	exon12	c.C1288A	p.Q430K	.	.	140	41	199	0	.	93
EVX2	344191	hgsc.bcm.edu;bcgsc.ca	37	2	176948503	176948503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EVX2	NM_001080458	exon1	c.T2C	p.M1T	.	.	83	4	179	0	.	70
EXOC4	60412	hgsc.bcm.edu;bcgsc.ca	37	7	133692446	133692446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC4	NM_021807	exon17	c.T2545C	p.S849P	.	.	81	4	129	0	.	159
EXOC8	149371	hgsc.bcm.edu	37	1	231472089	231472089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXOC8	NM_175876	exon1	c.T1403C	p.L468P	.	.	93	5	103	0	.	91
EXPH5	23086	hgsc.bcm.edu	37	11	108409913	108409913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXPH5	NM_015065	exon3	c.A281G	p.D94G	.	.	91	4	144	0	.	95
EXTL1	2134	hgsc.bcm.edu	37	1	26356101	26356101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXTL1	NM_004455	exon3	c.T884C	p.I295T	.	.	95	4	120	0	.	90
EXTL2	2135	hgsc.bcm.edu	37	1	101339876	101339876	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EXTL2	NM_001261441	exon6	c.T639C	p.G213G	.	.	125	5	165	0	.	91
EYA4	2070	hgsc.bcm.edu	37	6	133767825	133767825	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EYA4	NM_172105	exon4	c.T141C	p.T47T	.	.	93	4	115	0	.	578
EZH1	2145	hgsc.bcm.edu	37	17	40870506	40870506	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	EZH1	NM_001991	exon9	c.C897A	p.C299X	.	.	72	4	130	0	.	229
FABP6	2172	hgsc.bcm.edu	37	5	159626128	159626128	+	Silent	SNP	G	G	T	rs146032989	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FABP6	NM_001130958	exon2	c.G15T	p.T5T	.	.	45	4	73	0	G|0.999;A|0.000	90
FAM107A	11170	hgsc.bcm.edu	37	3	58553082	58553082	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM107A	NM_001076778	exon3	c.T180C	p.G60G	.	.	112	5	154	0	.	278
FAM108B1	51104	hgsc.bcm.edu;bcgsc.ca	37	9	74485072	74485072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM108B1	NM_016014	exon3	c.T574C	p.S192P	.	.	94	4	184	0	.	90
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170657249	170657249	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM120B	NM_032448	exon5	c.T2028A	p.P676P	.	.	46	16	62	0	.	91
FAM122A	116224	bcgsc.ca	37	9	71395818	71395818	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM122A	NM_138333	exon1	c.A738G	p.G246G	.	.	166	6	260	2	.	90
FAM124A	220108	hgsc.bcm.edu	37	13	51825706	51825706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM124A	NM_145019	exon4	c.T311C	p.V104A	.	.	84	4	124	0	.	90
FAM151B	167555	hgsc.bcm.edu	37	5	79809580	79809580	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM151B	NM_205548	exon3	c.T309C	p.D103D	.	.	89	4	108	0	.	68
FAM160B1	57700	hgsc.bcm.edu	37	10	116605950	116605950	+	Missense_Mutation	SNP	C	C	A	rs17853717		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM160B1	NM_020940	exon10	c.C1222A	p.L408I	.	.	119	5	178	0	C|1.000;|0.000	91
FAM160B2	64760	hgsc.bcm.edu	37	8	21955610	21955610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_022749	exon6	c.G557T	p.C186F	.	.	77	5	206	0	.	.
FAM171A2	284069	hgsc.bcm.edu	37	17	42433683	42433683	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_198475	exon5	c.T636C	p.A212A	.	.	80	3	89	0	.	.
FAM171B	165215	bcgsc.ca	37	2	187627123	187627123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM171B	NM_177454	exon8	c.T2054C	p.V685A	.	.	68	5	121	0	.	141
FAM179B	23116	hgsc.bcm.edu	37	14	45464958	45464958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon2	c.T2056C	p.Y686H	.	.	65	4	107	0	.	93
FAM179B	23116	hgsc.bcm.edu;bcgsc.ca	37	14	45535808	45535808	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM179B	NM_015091	exon16	c.C4428T	p.T1476T	.	.	81	4	167	0	.	93
FAM188B	84182	hgsc.bcm.edu	37	7	30921896	30921896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM188B	NM_032222	exon16	c.A2072G	p.D691G	.	.	142	6	192	0	.	90
FAM211B	388886	hgsc.bcm.edu;bcgsc.ca	37	22	24981864	24981864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_207644	exon4	c.G938T	p.C313F	.	.	64	4	59	0	.	.
FAM212B	55924	hgsc.bcm.edu	37	1	112270030	112270030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_019099	exon2	c.C454T	p.R152X	.	.	57	4	96	0	.	.
FAM213B	127281	hgsc.bcm.edu	37	1	2519820	2519820	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001195736	exon4	c.T456C	p.C152C	.	.	79	4	115	0	.	.
FAM69A	388650	hgsc.bcm.edu	37	1	93309606	93309606	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001006605	exon5	c.G621A	p.V207V	.	.	97	4	165	0	.	.
FAM71B	153745	hgsc.bcm.edu	37	5	156590132	156590132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM71B	NM_130899	exon2	c.A1144G	p.T382A	.	.	67	4	71	0	.	96
FAM76B	143684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	95516268	95516268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM76B	NM_144664	exon5	c.A524G	p.H175R	.	.	315	80	443	1	.	90
FAM83F	113828	hgsc.bcm.edu	37	22	40417619	40417619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM83F	NM_138435	exon4	c.T1105C	p.W369R	.	.	29	4	36	0	.	153
FAM83F	113828	hgsc.bcm.edu	37	22	40417665	40417665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAM83F	NM_138435	exon4	c.T1151C	p.V384A	.	.	88	5	118	0	.	153
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31221547	31221547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAN1	NM_014967	exon12	c.A2734G	p.R912G	.	.	100	26	133	0	.	90
FARSA	2193	bcgsc.ca	37	19	13044469	13044469	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FARSA	NM_004461	exon1	c.G42T	p.L14L	.	.	58	4	77	0	.	91
FASN	2194	bcgsc.ca	37	17	80046731	80046731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FASN	NM_004104	exon15	c.A2326G	p.K776E	.	.	51	4	97	0	.	90
FASN	2194	hgsc.bcm.edu;bcgsc.ca	37	17	80041462	80041462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FASN	NM_004104	exon31	c.A5272G	p.R1758G	.	.	64	5	83	0	.	90
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	4	187584675	187584675	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT1	NM_005245	exon3	c.T3358C	p.S1120P	.	.	89	5	144	0	.	34
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150946265	150946265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT2	NM_001447	exon1	c.A2228T	p.D743V	.	.	65	6	121	0	.	96
FAT4	79633	hgsc.bcm.edu	37	4	126240414	126240414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FAT4	NM_024582	exon1	c.A2848G	p.S950G	.	.	100	4	142	0	.	108
FBF1	85302	hgsc.bcm.edu	37	17	73926112	73926112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBF1	NM_001080542	exon6	c.A203G	p.E68G	.	.	40	4	58	0	.	205
FBLN2	2199	hgsc.bcm.edu	37	3	13678012	13678012	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBLN2	NM_001004019	exon17	c.T3282C	p.G1094G	.	.	122	4	144	0	.	91
FBN2	2201	hgsc.bcm.edu	37	5	127800501	127800501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBN2	NM_001999	exon6	c.G742A	p.G248S	.	.	93	4	110	0	.	146
FBN3	84467	bcgsc.ca	37	19	8182054	8182054	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBN3	NM_032447	exon27	c.A3585G	p.A1195A	.	.	89	5	147	0	.	100
FBXL14	144699	hgsc.bcm.edu	37	12	1702156	1702156	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXL14	NM_152441	exon1	c.C1077T	p.T359T	.	.	68	4	135	0	.	227
FBXO22	26263	hgsc.bcm.edu	37	15	76206465	76206465	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXO22	NM_012170	exon4	c.A382G	p.S128G	.	.	92	4	154	0	.	658
FBXO39	162517	hgsc.bcm.edu	37	17	6683348	6683348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXO39	NM_153230	exon2	c.A161G	p.E54G	.	.	137	5	225	0	.	228
FBXW4	6468	hgsc.bcm.edu	37	10	103372236	103372236	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXW4	NM_022039	exon8	c.837-2A>G	.	.	.	61	4	82	0	.	226
FBXW9	84261	hgsc.bcm.edu	37	19	12805705	12805705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FBXW9	NM_032301	exon2	c.C457A	p.L153M	.	.	82	4	118	0	.	227
FCGR1C	100132417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	149375194	149375194	+	RNA	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	822	198	1227	0	.	.
FCGR3A	2214	broad.mit.edu	37	1	161512834	161512834	+	Missense_Mutation	SNP	A	A	G	rs1042208	bycluster	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FCGR3A	NM_000569	exon5	c.T841C	p.F281L	.	.	591	10	449	1	A|0.500;G|0.500	91
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157497528	157497528	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FCRL5	NM_031281	exon9	c.C1839T	p.P613P	.	.	218	140	222	0	.	156
FGD5	152273	hgsc.bcm.edu	37	3	14861366	14861366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FGD5	NM_152536	exon1	c.A788G	p.Q263R	.	.	90	4	101	0	.	231
FGF20	26281	hgsc.bcm.edu	37	8	16850684	16850684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FGF20	NM_019851	exon3	c.G533A	p.G178D	.	.	80	4	180	0	.	522
FKBP10	60681	hgsc.bcm.edu	37	17	39976640	39976640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FKBP10	NM_021939	exon7	c.A1183G	p.T395A	.	.	140	6	221	0	.	227
FKBP15	23307	hgsc.bcm.edu	37	9	115932080	115932080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FKBP15	NM_015258	exon26	c.C2909A	p.A970E	.	.	93	4	99	0	.	25
FLT4	2324	bcgsc.ca	37	5	180047611	180047611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FLT4	NM_182925	exon16	c.A2404G	p.R802G	.	.	139	6	205	1	.	1490
FMNL3	91010	hgsc.bcm.edu	37	12	50040685	50040685	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FMNL3	NM_175736	exon25	c.C2979A	p.I993I	.	.	150	6	252	0	.	228
FN3K	64122	hgsc.bcm.edu	37	17	80699230	80699230	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FN3K	NM_022158	exon4	c.C429A	p.F143L	.	.	87	4	114	0	.	90
FOXJ3	22887	hgsc.bcm.edu;bcgsc.ca	37	1	42730811	42730811	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXJ3	NM_001198851	exon6	c.C419G	p.P140R	.	.	80	4	85	0	.	228
FOXRED1	55572	hgsc.bcm.edu	37	11	126147548	126147548	+	Silent	SNP	C	C	T	rs150932515		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FOXRED1	NM_017547	exon11	c.C1425T	p.Y475Y	.	.	64	4	85	0	C|1.000;T|0.000	90
FSD1	79187	hgsc.bcm.edu	37	19	4323608	4323608	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FSD1	NM_024333	exon13	c.G1459A	p.A487T	.	.	111	5	197	0	.	91
FUBP1	8880	hgsc.bcm.edu	37	1	78432758	78432758	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FUBP1	NM_003902	exon5	c.A318G	p.K106K	.	.	77	4	140	0	.	227
FUK	197258	hgsc.bcm.edu	37	16	70502753	70502753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FUK	NM_145059	exon9	c.T665C	p.V222A	.	.	85	4	170	0	.	91
FZD9	8326	hgsc.bcm.edu	37	7	72849391	72849391	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	FZD9	NM_003508	exon1	c.G1054T	p.E352X	.	.	84	4	126	0	.	1082
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	161292754	161292754	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GABRA1	NM_001127643	exon5	c.T215A	p.I72N	.	.	207	12	225	0	.	93
GALC	2581	bcgsc.ca	37	14	88442716	88442716	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GALC	NM_000153	exon7	c.G738A	p.V246V	.	.	72	4	133	0	.	90
GANC	2595	hgsc.bcm.edu	37	15	42621587	42621587	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GANC	NM_198141	exon14	c.T1584C	p.N528N	.	.	46	4	69	0	.	92
GAS1	2619	hgsc.bcm.edu;bcgsc.ca	37	9	89561085	89561085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GAS1	NM_002048	exon1	c.C610T	p.R204C	.	.	39	4	63	0	.	226
GATA1	2623	hgsc.bcm.edu	37	X	48650745	48650745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GATA1	NM_002049	exon4	c.T614C	p.V205A	.	.	112	4	113	0	.	1315
GBF1	8729	hgsc.bcm.edu;bcgsc.ca	37	10	104119157	104119157	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GBF1	NM_001199378	exon11	c.G1145C	p.R382P	.	.	76	4	114	0	.	91
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120582132	120582132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon42	c.T5473C	p.F1825L	.	.	115	6	190	0	.	94
GCN1L1	10985	hgsc.bcm.edu;bcgsc.ca	37	12	120591048	120591048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GCN1L1	NM_006836	exon33	c.T4031C	p.L1344P	.	.	110	5	188	0	.	94
GDA	9615	hgsc.bcm.edu	37	9	74842881	74842881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GDA	NM_004293	exon9	c.A845G	p.Y282C	.	.	65	4	104	0	.	230
GDPD5	81544	hgsc.bcm.edu	37	11	75152777	75152777	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GDPD5	NM_030792	exon13	c.C1239T	p.G413G	.	.	60	4	112	0	.	91
GEM	2669	hgsc.bcm.edu	37	8	95262794	95262794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GEM	NM_181702	exon5	c.T635C	p.V212A	.	.	89	4	76	0	.	659
GFER	2671	hgsc.bcm.edu	37	16	2034924	2034924	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GFER	NM_005262	exon2	c.T435C	p.C145C	.	.	89	4	118	0	.	90
GFRA2	2675	hgsc.bcm.edu	37	8	21562513	21562513	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001495	exon6	c.C1029A	p.T343T	.	.	94	4	161	0	.	.
GGA2	23062	hgsc.bcm.edu	37	16	23489698	23489698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GGA2	NM_015044	exon13	c.C1283A	p.P428Q	.	.	87	4	146	0	.	91
GJB6	10804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20797362	20797362	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GJB6	NM_001110220	exon4	c.C258A	p.T86T	.	.	49	9	91	0	.	91
GLI3	2737	bcgsc.ca	37	7	42188061	42188061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GLI3	NM_000168	exon3	c.A131G	p.E44G	.	.	196	8	282	2	.	1149
GLIS3	169792	hgsc.bcm.edu	37	9	4118024	4118024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GLIS3	NM_001042413	exon4	c.C1454T	p.A485V	.	.	31	4	46	0	.	91
GLT8D2	83468	hgsc.bcm.edu	37	12	104393207	104393207	+	Missense_Mutation	SNP	G	G	A	rs199929846		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GLT8D2	NM_031302	exon6	c.C370T	p.P124S	.	.	92	4	190	0	.	92
GNA13	10672	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	63014414	63014414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GNA13	NM_006572	exon3	c.C518A	p.S173Y	.	.	277	20	378	1	.	227
GPBAR1	151306	hgsc.bcm.edu	37	2	219127978	219127978	+	Silent	SNP	C	C	T	rs200360810		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPBAR1	NM_170699	exon2	c.C531T	p.A177A	.	.	89	4	108	0	.	23
GPC6	10082	hgsc.bcm.edu	37	13	94482742	94482742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPC6	NM_005708	exon3	c.A655G	p.R219G	.	.	92	4	175	0	.	90
GPR126	57211	hgsc.bcm.edu;bcgsc.ca	37	6	142764487	142764487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR126	NM_020455	exon26	c.G3634A	p.G1212R	.	.	82	4	105	0	.	91
GPR148	344561	hgsc.bcm.edu;bcgsc.ca	37	2	131487678	131487678	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR148	NM_207364	exon1	c.C954T	p.Y318Y	.	.	81	5	91	0	.	91
GPR158	57512	hgsc.bcm.edu	37	10	25887786	25887786	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR158	NM_020752	exon11	c.A3231T	p.Q1077H	.	.	108	5	175	0	.	141
GPR162	27239	hgsc.bcm.edu	37	12	6935396	6935396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR162	NM_019858	exon4	c.T1093C	p.C365R	.	.	75	4	78	0	.	92
GPR182	11318	hgsc.bcm.edu	37	12	57389925	57389925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR182	NM_007264	exon2	c.T932C	p.L311P	.	.	83	4	139	0	.	500
GPR35	2859	hgsc.bcm.edu	37	2	241570144	241570144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR35	NM_001195382	exon6	c.T868C	p.Y290H	.	.	127	6	209	0	.	93
GPR84	53831	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	54757018	54757018	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPR84	NM_020370	exon2	c.A618G	p.K206K	.	.	51	5	76	0	.	523
GPRC6A	222545	hgsc.bcm.edu	37	6	117114093	117114093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPRC6A	NM_148963	exon6	c.A1993G	p.M665V	.	.	90	5	159	0	.	96
GPT	2875	hgsc.bcm.edu	37	8	145731975	145731975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GPT	NM_005309	exon9	c.T1223C	p.V408A	.	.	89	4	72	0	.	91
GRAMD1A	57655	bcgsc.ca	37	19	35514368	35514368	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRAMD1A	NM_020895	exon19	c.C1999T	p.L667L	.	.	146	5	239	0	.	90
GRB7	2886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37902437	37902437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRB7	NM_001242442	exon14	c.G1503T	p.K501N	.	.	102	27	172	1	.	848
GREB1	9687	hgsc.bcm.edu;bcgsc.ca	37	2	11770126	11770126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GREB1	NM_014668	exon26	c.A4502G	p.E1501G	.	.	116	7	206	0	.	91
GRM1	2911	hgsc.bcm.edu	37	6	146755356	146755356	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRM1	NM_000838	exon9	c.C3009T	p.F1003F	.	.	83	4	148	0	.	1080
GRM4	2914	ucsc.edu;bcgsc.ca	37	6	34004201	34004201	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRM4	NM_000841	exon9	c.T1686C	p.Y562Y	.	.	43	4	49	0	.	525
GRP	2922	broad.mit.edu	37	18	56892742	56892742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GRP	NM_001012512	exon2	c.A158G	p.K53R	.	.	96	4	104	0	.	90
GSR	2936	hgsc.bcm.edu	37	8	30585092	30585092	+	Silent	SNP	A	A	G	rs2280855	bycluster;byfrequency;by1000genomes	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	GSR,NS,NS,0	GSR	NM_001195103	exon1	c.T261C	p.G87G	.	.	7	5	8	1	A|0.925;G|0.075	94
GTSE1	51512	hgsc.bcm.edu;bcgsc.ca	37	22	46704325	46704325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GTSE1	NM_016426	exon4	c.A247G	p.T83A	.	.	80	4	128	0	.	187
GUCD1	83606	bcgsc.ca	37	22	24939989	24939989	+	Missense_Mutation	SNP	A	A	G	rs730373	bycluster;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_031444	exon5	c.T449C	p.V150A	.	.	71	4	124	3	A|0.998;C|0.002	.
GUCY1A3	2982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156631936	156631936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	GUCY1A3	NM_001130687	exon6	c.C619T	p.P207S	.	.	96	27	138	0	.	93
HAP1	9001	hgsc.bcm.edu;bcgsc.ca	37	17	39889015	39889015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAP1	NM_177977	exon2	c.A505G	p.I169V	.	.	130	6	250	0	.	92
HAS3	3038	hgsc.bcm.edu	37	16	69143389	69143389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HAS3	NM_138612	exon2	c.A91G	p.T31A	.	.	86	4	114	0	.	90
HBEGF	1839	broad.mit.edu	37	5	139722334	139722334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HBEGF	NM_001945	exon3	c.A284G	p.K95R	.	.	501	8	618	1	.	90
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18687567	18687567	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HDAC9	NM_178425	exon9	c.C1195T	p.L399L	.	.	57	18	83	0	.	227
HEATR1	55127	hgsc.bcm.edu	37	1	236715301	236715301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR1	NM_018072	exon44	c.A6344G	p.E2115G	.	.	116	5	96	0	.	93
HEATR3	55027	hgsc.bcm.edu	37	16	50120179	50120179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR3	NM_182922	exon11	c.T1427C	p.L476P	.	.	108	5	180	0	.	92
HEATR5A	25938	bcgsc.ca	37	14	31844057	31844057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR5A	NM_015473	exon12	c.A1826G	p.Q609R	.	.	194	6	248	0	.	23
HEATR5B	54497	hgsc.bcm.edu;bcgsc.ca	37	2	37227915	37227915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEATR5B	NM_019024	exon33	c.A5359G	p.R1787G	.	.	100	4	174	0	.	142
HECTD1	25831	bcgsc.ca	37	14	31642933	31642933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HECTD1	NM_015382	exon5	c.C683T	p.A228V	.	.	67	4	136	0	.	570
HECTD3	79654	hgsc.bcm.edu	37	1	45473144	45473144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HECTD3	NM_024602	exon10	c.A1444G	p.M482V	.	.	119	5	163	0	.	658
HEPACAM2	253012	hgsc.bcm.edu;bcgsc.ca	37	7	92825166	92825166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEPACAM2	NM_001039372	exon8	c.T1250C	p.F417S	.	.	89	5	113	0	.	157
HERC1	8925	hgsc.bcm.edu	37	15	64047472	64047472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HERC1	NM_003922	exon6	c.A1586G	p.D529G	.	.	74	4	149	0	.	666
HERC5	51191	hgsc.bcm.edu	37	4	89397168	89397168	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HERC5	NM_016323	exon12	c.T1569C	p.S523S	.	.	124	5	190	0	.	664
HEXA	3073	hgsc.bcm.edu	37	15	72643538	72643538	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEXA	NM_000520	exon6	c.G608A	p.W203X	.	.	82	4	108	0	.	94
HEXDC	284004	hgsc.bcm.edu	37	17	80399134	80399134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEXDC	NM_173620	exon10	c.G1244T	p.R415M	.	.	101	5	208	0	.	92
HEY2	23493	bcgsc.ca	37	6	126073170	126073170	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HEY2	NM_012259	exon3	c.T180C	p.R60R	.	.	112	4	194	0	.	658
HGF	3082	hgsc.bcm.edu;bcgsc.ca	37	7	81335733	81335733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HGF	NM_000601	exon15	c.G1627A	p.D543N	.	.	80	4	122	0	.	516
HIST1H3A	8350	hgsc.bcm.edu	37	6	26020867	26020867	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIST1H3A	NM_003529	exon1	c.C150A	p.R50R	.	.	73	4	96	0	.	92
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	143094773	143094773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP2	NM_006734	exon5	c.A1103G	p.K368R	.	.	115	6	201	0	.	95
HIVEP3	59269	hgsc.bcm.edu;bcgsc.ca	37	1	42046720	42046720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HIVEP3	NM_024503	exon4	c.T3749C	p.L1250P	.	.	70	4	102	0	.	157
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907747	12907747	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HNRNPCL1	NM_001013631	exon2	c.T396C	p.P132P	.	.	172	7	311	0	.	68
HORMAD2	150280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	30517682	30517682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152510	exon9	c.G472T	p.V158F	.	.	226	60	301	0	.	.
HOXC12	3228	hgsc.bcm.edu	37	12	54350171	54350171	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HOXC12	NM_173860	exon2	c.T670C	p.L224L	.	.	98	4	124	0	.	91
HPS3	84343	hgsc.bcm.edu	37	3	148847621	148847621	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HPS3	NM_032383	exon1	c.G111T	p.A37A	.	.	68	4	92	0	.	158
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986470	21986470	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HR	NM_018411	exon2	c.A214C	p.M72L	.	.	60	20	83	0	.	154
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152192435	152192435	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HRNR	NM_001009931	exon3	c.G1670C	p.S557T	.	.	291	27	255	0	.	93
HS3ST1	9957	hgsc.bcm.edu	37	4	11401109	11401109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HS3ST1	NM_005114	exon2	c.T521C	p.I174T	.	.	96	4	115	0	.	91
HS6ST2	90161	hgsc.bcm.edu	37	X	131763092	131763092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HS6ST2	NM_001077188	exon6	c.A1097G	p.D366G	.	.	103	5	98	0	.	130
HSD17B3	3293	hgsc.bcm.edu	37	9	99007625	99007625	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSD17B3	NM_000197	exon9	c.606+2T>C	.	.	.	109	5	153	0	.	90
HSD3B1	3283	bcgsc.ca	37	1	120057015	120057015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSD3B1	NM_000862	exon4	c.T869C	p.L290P	.	.	220	6	292	0	.	92
HSP90AA1	3320	hgsc.bcm.edu	37	14	102548723	102548723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSP90AA1	NM_001017963	exon11	c.G2180T	p.G727V	.	.	99	5	136	0	.	949
HSP90AB1	3326	broad.mit.edu	37	6	44216415	44216415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSP90AB1	NM_007355	exon2	c.T49C	p.F17L	.	.	214	5	280	0	.	658
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128716923	128716923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPA4L	NM_014278	exon3	c.A166G	p.I56V	.	.	117	5	198	0	.	228
HSPG2	3339	hgsc.bcm.edu	37	1	22182319	22182319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HSPG2	NM_005529	exon45	c.A5662G	p.S1888G	.	.	90	5	151	0	.	141
HYDIN	54768	hgsc.bcm.edu	37	16	71163592	71163592	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HYDIN	NM_001198542	exon9	c.A1259G	p.Q420R	.	.	80	4	121	0	.	92
HYOU1	10525	hgsc.bcm.edu	37	11	118917336	118917336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	HYOU1	NM_006389	exon23	c.G2774T	p.R925L	.	.	94	4	199	0	.	90
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95012165	95012165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IARS	NM_013417	exon25	c.A2591G	p.K864R	.	.	78	4	144	0	.	92
IDO1	3620	hgsc.bcm.edu	37	8	39781035	39781035	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IDO1	NM_002164	exon7	c.T585C	p.T195T	.	.	92	4	152	0	.	227
IER5L	389792	hgsc.bcm.edu	37	9	131939318	131939318	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IER5L	NM_203434	exon1	c.C1014A	p.R338R	.	.	77	4	84	0	.	226
IFI27L1	122509	hgsc.bcm.edu	37	14	94568204	94568204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFI27L1	NM_145249	exon4	c.T106C	p.F36L	.	.	99	6	157	0	.	90
IFIT1	3434	hgsc.bcm.edu;bcgsc.ca	37	10	91163429	91163429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFIT1	NM_001548	exon2	c.T1397C	p.L466P	.	.	99	5	118	0	.	90
IFT88	8100	bcgsc.ca	37	13	21215511	21215511	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IFT88	NM_175605	exon20	c.C1683A	p.A561A	.	.	69	4	122	1	.	91
IGHMBP2	3508	hgsc.bcm.edu	37	11	68682309	68682309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGHMBP2	NM_002180	exon6	c.T730C	p.S244P	.	.	77	4	102	0	.	90
IGLL1	3543	hgsc.bcm.edu	37	22	23922198	23922198	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGLL1	NM_020070	exon1	c.G180A	p.R60R	.	.	60	4	83	0	.	90
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	130408626	130408626	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF1	NM_001170961	exon18	c.A3713T	p.Y1238F	.	.	140	11	187	0	.	133
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	117156433	117156433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IGSF3	NM_001542	exon4	c.G786T	p.M262I	.	.	135	32	180	0	.	92
IKBKG	8517	hgsc.bcm.edu;bcgsc.ca	37	X	153770550	153770550	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IKBKG	NM_001099856	exon1	c.T72C	p.S24S	.	.	79	5	112	0	.	636
IL11RA	3590	hgsc.bcm.edu	37	9	34659771	34659771	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.C826T	p.L276L	.	.	77	4	134	0	.	227
IL11RA	3590	hgsc.bcm.edu;bcgsc.ca	37	9	34659894	34659894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL11RA	NM_001142784	exon9	c.A949G	p.T317A	.	.	51	4	94	0	.	227
IL1R1	3554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102791973	102791973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL1R1	NM_000877	exon10	c.T1171C	p.Y391H	.	.	692	211	972	2	.	523
IL22	50616	hgsc.bcm.edu	37	12	68646556	68646556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL22	NM_020525	exon2	c.C240A	p.F80L	.	.	73	4	119	0	.	90
IL6ST	3572	hgsc.bcm.edu	37	5	55259292	55259292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IL6ST	NM_175767	exon7	c.A701G	p.E234G	.	.	95	4	119	0	.	290
IMP4	92856	hgsc.bcm.edu	37	2	131104030	131104030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IMP4	NM_033416	exon9	c.A865G	p.S289G	.	.	74	5	105	0	.	90
IMPG2	50939	hgsc.bcm.edu	37	3	100976517	100976517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IMPG2	NM_016247	exon10	c.G1009A	p.G337S	.	.	80	4	144	0	.	93
INADL	10207	hgsc.bcm.edu	37	1	62593719	62593719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INADL	NM_176877	exon40	c.G5119T	p.A1707S	.	.	95	4	194	0	.	94
INO80	54617	hgsc.bcm.edu	37	15	41339666	41339666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80	NM_017553	exon23	c.G2675T	p.R892L	.	.	60	4	89	0	.	72
INO80D	54891	hgsc.bcm.edu;bcgsc.ca	37	2	206893049	206893049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INO80D	NM_017759	exon6	c.G1084A	p.D362N	.	.	59	4	61	0	.	91
INPP5E	56623	hgsc.bcm.edu	37	9	139327478	139327478	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INPP5E	NM_019892	exon5	c.C1209T	p.T403T	.	.	115	5	206	0	.	227
INPPL1	3636	broad.mit.edu	37	11	71949087	71949087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INPPL1	NM_001567	exon27	c.C3554A	p.A1185D	.	.	78	9	48	0	.	660
INSR	3643	hgsc.bcm.edu	37	19	7132201	7132201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	INSR	NM_000208	exon14	c.C2810T	p.T937M	.	.	87	4	120	0	.	1381
INTS1	26173	hgsc.bcm.edu	37	7	1534513	1534513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001080453	exon14	c.T1849C	p.F617L	.	.	85	4	116	0	.	.
IPPK	64768	hgsc.bcm.edu	37	9	95411851	95411851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IPPK	NM_022755	exon5	c.C298A	p.R100S	.	.	67	4	98	0	.	92
IRGC	56269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44222899	44222899	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IRGC	NM_019612	exon2	c.G189A	p.S63S	.	.	47	16	67	1	.	70
ITCH	83737	bcgsc.ca	37	20	33077071	33077071	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITCH	NM_001257137	exon22	c.A2217G	p.R739R	.	.	145	5	256	0	.	659
ITGA2B	3674	hgsc.bcm.edu	37	17	42461045	42461045	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITGA2B	NM_000419	exon12	c.A1026G	p.P342P	.	.	94	4	146	0	.	228
ITGA5	3678	hgsc.bcm.edu	37	12	54797978	54797978	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITGA5	NM_002205	exon15	c.T1516A	p.F506I	.	.	98	4	102	0	.	659
ITIH3	3699	hgsc.bcm.edu	37	3	52831920	52831920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITIH3	NM_002217	exon6	c.C637A	p.L213I	.	.	75	4	113	0	.	93
ITSN1	6453	hgsc.bcm.edu	37	21	35140133	35140133	+	Splice_Site	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITSN1	NM_003024	exon11	c.1042+1G>T	.	.	.	81	4	153	0	.	94
ITSN1	6453	hgsc.bcm.edu	37	21	35255856	35255856	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ITSN1	NM_003024	exon36	c.T4557C	p.P1519P	.	.	100	4	161	0	.	94
IWS1	55677	broad.mit.edu	37	2	128262303	128262303	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	IWS1	NM_017969	exon3	c.A1176G	p.R392R	.	.	626	9	1022	1	.	91
JAK1	3716	hgsc.bcm.edu	37	1	65310560	65310560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	JAK1	NM_002227	exon16	c.C2128A	p.L710M	.	.	122	5	197	0	.	3900
JAKMIP1	152789	hgsc.bcm.edu	37	4	6087245	6087245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	JAKMIP1	NM_001099433	exon4	c.C736A	p.Q246K	.	.	90	5	151	0	.	292
KANSL3	55683	hgsc.bcm.edu;bcgsc.ca	37	2	97276523	97276523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001115016	exon11	c.G1259T	p.R420L	.	.	69	4	93	0	.	.
KAT2A	2648	hgsc.bcm.edu;bcgsc.ca	37	17	40266531	40266531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KAT2A	NM_021078	exon14	c.C2111A	p.P704H	.	.	68	4	104	0	.	523
KAT6A	7994	hgsc.bcm.edu	37	8	41906387	41906387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001099412	exon3	c.T109C	p.S37P	.	.	92	4	219	0	.	.
KAT6B	23522	hgsc.bcm.edu	37	10	76739019	76739019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_012330	exon10	c.G2153A	p.R718Q	.	.	85	4	142	0	.	.
KBTBD12	166348	hgsc.bcm.edu	37	3	127646843	127646843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KBTBD12	NM_207335	exon2	c.A1307G	p.N436S	.	.	68	4	118	0	.	23
KCNJ8	3764	hgsc.bcm.edu	37	12	21918966	21918966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KCNJ8	NM_004982	exon3	c.C966A	p.H322Q	.	.	98	4	121	0	.	90
KCNU1	157855	bcgsc.ca	37	8	36671743	36671743	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KCNU1	NM_001031836	exon8	c.C751T	p.P251S	.	.	66	5	215	0	.	23
KCTD19	146212	hgsc.bcm.edu	37	16	67331487	67331487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KCTD19	NM_001100915	exon7	c.A1066G	p.R356G	.	.	126	6	148	0	.	69
KDM1A	23028	hgsc.bcm.edu	37	1	23403758	23403758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KDM1A	NM_001009999	exon16	c.T1772A	p.V591E	.	.	79	5	126	0	.	206
KDM2B	84678	hgsc.bcm.edu	37	12	121868167	121868167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KDM2B	NM_032590	exon23	c.A3935G	p.E1312G	.	.	102	5	149	0	.	638
KDM5D	8284	bcgsc.ca	37	Y	21869926	21869926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KDM5D	NM_001146705	exon24	c.A3386G	p.D1129G	.	.	48	4	71	0	.	560
KIAA0430	9665	bcgsc.ca	37	16	15711379	15711379	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA0430	NM_014647	exon14	c.T2734C	p.L912L	.	.	25	3	44	0	.	90
KIAA0556	23247	hgsc.bcm.edu	37	16	27640026	27640026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA0556	NM_015202	exon4	c.T185C	p.L62P	.	.	91	4	159	0	.	141
KIAA1024	23251	hgsc.bcm.edu	37	15	79748703	79748703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1024	NM_015206	exon2	c.A214G	p.T72A	.	.	130	6	165	0	.	183
KIAA1033	23325	hgsc.bcm.edu	37	12	105515979	105515979	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1033	NM_015275	exon10	c.A749G	p.K250R	.	.	99	4	130	0	.	91
KIAA1217	56243	bcgsc.ca	37	10	24822139	24822139	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1217	NM_019590	exon16	c.A3387G	p.E1129E	.	.	53	4	81	0	.	98
KIAA1244	57221	hgsc.bcm.edu	37	6	138655204	138655204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1244	NM_020340	exon33	c.T5221C	p.S1741P	.	.	70	4	115	0	.	228
KIAA1324L	222223	hgsc.bcm.edu;bcgsc.ca	37	7	86574222	86574222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1324L	NM_001142749	exon4	c.A647G	p.E216G	.	.	134	6	245	0	.	97
KIAA1598	57698	hgsc.bcm.edu	37	10	118713701	118713701	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1598	NM_001127211	exon5	c.G288A	p.T96T	.	.	89	4	122	0	.	90
KIAA1683	80726	hgsc.bcm.edu	37	19	18376583	18376583	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1683	NM_001145304	exon3	c.A1767G	p.G589G	.	.	79	5	101	0	.	92
KIAA1704	55425	hgsc.bcm.edu	37	13	45589705	45589705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1704	NM_018559	exon6	c.C679T	p.P227S	.	.	98	4	136	0	.	92
KIAA1958	158405	hgsc.bcm.edu;bcgsc.ca	37	9	115421704	115421704	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA1958	NM_133465	exon4	c.C1506A	p.T502T	.	.	73	4	82	0	.	91
KIAA2026	158358	hgsc.bcm.edu	37	9	5921962	5921962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIAA2026	NM_001017969	exon8	c.T4034C	p.L1345P	.	.	92	4	116	0	.	92
KIDINS220	57498	hgsc.bcm.edu	37	2	8931198	8931198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIDINS220	NM_020738	exon13	c.A1433G	p.K478R	.	.	98	4	190	0	.	93
KIF13A	63971	hgsc.bcm.edu	37	6	17794586	17794586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF13A	NM_001105567	exon25	c.A3116G	p.Q1039R	.	.	95	4	110	0	.	137
KIF15	56992	bcgsc.ca	37	3	44879852	44879852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF15	NM_020242	exon27	c.T3257C	p.L1086P	.	.	182	6	260	0	.	91
KIF1B	23095	hgsc.bcm.edu	37	1	10425293	10425293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF1B	NM_015074	exon40	c.T4364C	p.L1455P	.	.	118	5	185	0	.	93
KIF21B	23046	hgsc.bcm.edu	37	1	200978024	200978024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KIF21B	NM_017596	exon3	c.A320G	p.E107G	.	.	100	6	101	0	.	96
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39435941	39435941	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLB	NM_175737	exon2	c.A937T	p.T313S	.	.	197	55	317	0	.	69
KLHDC10	23008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129761948	129761948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC10	NM_014997	exon5	c.A685G	p.I229V	.	.	184	67	232	0	.	90
KLHDC7A	127707	hgsc.bcm.edu	37	1	18808601	18808601	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHDC7A	NM_152375	exon1	c.C1126T	p.Q376X	.	.	42	4	74	0	.	93
KLHL12	59349	hgsc.bcm.edu	37	1	202887515	202887515	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL12	NM_021633	exon4	c.T351C	p.G117G	.	.	95	5	88	0	.	522
KLHL13	90293	hgsc.bcm.edu	37	X	117053532	117053532	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.A531G	p.L177L	.	.	166	6	345	0	.	556
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	117053530	117053536	+	Frame_Shift_Del	DEL	TGTAGGA	TGTAGGA	-	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	TGTAGGA	TGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL13	NM_001168299	exon5	c.527_533del	p.176_178del	.	.	184	0	343	0	.	556
KLHL28	54813	hgsc.bcm.edu	37	14	45414503	45414503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KLHL28	NM_017658	exon2	c.T629A	p.V210E	.	.	148	6	186	0	.	91
KPNB1	3837	hgsc.bcm.edu	37	17	45742517	45742517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KPNB1	NM_002265	exon9	c.C992T	p.S331F	.	.	67	4	64	0	.	229
KRT15	3866	hgsc.bcm.edu	37	17	39673092	39673092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRT15	NM_002275	exon3	c.G706A	p.E236K	.	.	98	4	199	0	.	90
KRT85	3891	hgsc.bcm.edu	37	12	52758122	52758122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRT85	NM_002283	exon3	c.A658G	p.T220A	.	.	98	4	193	0	.	91
KRTAP10-12	386685	ucsc.edu	37	21	46117307	46117307	+	Missense_Mutation	SNP	G	G	A	rs200968568		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KRTAP10-12	NM_198699	exon1	c.G191A	p.R64Q	.	.	165	17	201	4	G|0.998;A|0.002	90
KRTAP4-11	653240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39274140	39274140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033059	exon1	c.G428T	p.S143I	.	.	97	18	148	0	.	.
KYNU	8942	bcgsc.ca	37	2	143799644	143799644	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	KYNU	NM_001199241	exon15	c.G1301T	p.R434L	.	.	150	5	274	1	.	92
L3MBTL4	91133	hgsc.bcm.edu	37	18	6138235	6138235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	L3MBTL4	NM_173464	exon14	c.G1157A	p.G386E	.	.	66	4	67	0	.	93
LAMA1	284217	bcgsc.ca	37	18	6995417	6995417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA1	NM_005559	exon34	c.A4835G	p.K1612R	.	.	295	8	452	0	.	149
LAMA1	284217	hgsc.bcm.edu	37	18	6955406	6955406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA1	NM_005559	exon57	c.T8153C	p.L2718P	.	.	142	6	178	0	.	149
LAMA2	3908	bcgsc.ca	37	6	129612793	129612793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA2	NM_000426	exon20	c.G2784T	p.E928D	.	.	101	5	154	0	.	162
LAMA3	3909	broad.mit.edu	37	18	21418833	21418833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA3	NM_001127717	exon26	c.T3182C	p.V1061A	.	.	297	7	463	2	.	100
LAMA3	3909	hgsc.bcm.edu	37	18	21451567	21451567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA3	NM_001127717	exon38	c.T4940C	p.I1647T	.	.	99	4	144	0	.	100
LAMA4	3910	bcgsc.ca	37	6	112435371	112435371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA4	NM_001105206	exon38	c.T5234C	p.L1745S	.	.	103	4	159	0	.	140
LAMA5	3911	hgsc.bcm.edu	37	20	60891820	60891820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMA5	NM_005560	exon57	c.C7663T	p.R2555W	.	.	60	5	69	0	.	93
LAMB2	3913	hgsc.bcm.edu	37	3	49162736	49162736	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LAMB2	NM_002292	exon19	c.A2670G	p.T890T	.	.	72	4	119	0	.	93
LGALS3	3958	hgsc.bcm.edu	37	14	55611952	55611952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LGALS3	NM_002306	exon6	c.A716G	p.D239G	.	.	93	4	185	0	.	514
LGALS9B	284194	broad.mit.edu	37	17	20363690	20363690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LGALS9B	NM_001042685	exon2	c.G106A	p.A36T	.	.	1258	15	1884	1	.	23
LHX8	431707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	75602350	75602350	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LHX8	NM_001001933	exon3	c.C81T	p.R27R	.	.	93	20	163	0	.	93
LIFR	3977	bcgsc.ca	37	5	38510780	38510780	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LIFR	NM_002310	exon7	c.A777G	p.K259K	.	.	130	5	140	0	.	1173
LIG1	3978	hgsc.bcm.edu	37	19	48636262	48636262	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LIG1	NM_000234	exon18	c.A1702G	p.K568E	.	.	96	4	145	0	.	722
LINC00518	221718	bcgsc.ca	37	6	10430451	10430451	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	130	5	197	0	.	.
LOC389705	0	bcgsc.ca	37	9	15007848	15007848	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	102	5	157	0	.	.
LONRF1	91694	hgsc.bcm.edu;bcgsc.ca	37	8	12586494	12586494	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LONRF1	NM_152271	exon10	c.T1926C	p.V642V	.	.	122	6	311	0	.	91
LOXL1	4016	hgsc.bcm.edu	37	15	74239486	74239486	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL1	NM_005576	exon4	c.C1428T	p.H476H	.	.	81	4	128	0	.	226
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74761507	74761507	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LOXL3	NM_032603	exon11	c.T1875C	p.N625N	.	.	287	64	435	0	.	226
LRFN2	57497	hgsc.bcm.edu	37	6	40360061	40360061	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRFN2	NM_020737	exon3	c.A1991G	p.D664G	.	.	102	5	185	0	.	93
LRFN5	145581	hgsc.bcm.edu	37	14	42356737	42356737	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRFN5	NM_152447	exon3	c.G909A	p.R303R	.	.	93	4	140	0	.	97
LRIT3	345193	hgsc.bcm.edu;bcgsc.ca	37	4	110791336	110791336	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRIT3	NM_198506	exon4	c.A1431G	p.Q477Q	.	.	124	5	214	0	.	90
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170136002	170136002	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRP2	NM_004525	exon12	c.A1445G	p.Y482C	.	.	144	45	201	0	.	175
LRRC57	255252	hgsc.bcm.edu	37	15	42839716	42839716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC57	NM_153260	exon4	c.G235T	p.D79Y	.	.	115	5	207	0	.	90
LRRC7	57554	hgsc.bcm.edu	37	1	70505146	70505146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon19	c.A3525G	p.E1175E	.	.	93	4	98	0	.	163
LRRC7	57554	hgsc.bcm.edu;bcgsc.ca	37	1	70460299	70460299	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRC7	NM_020794	exon9	c.A873G	p.L291L	.	.	70	4	109	0	.	163
LRRCC1	85444	hgsc.bcm.edu	37	8	86039024	86039024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRCC1	NM_033402	exon9	c.C1373T	p.A458V	.	.	100	4	92	0	.	90
LRRN3	54674	hgsc.bcm.edu;bcgsc.ca	37	7	110764148	110764148	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRN3	NM_018334	exon2	c.T1320C	p.V440V	.	.	50	4	82	0	.	154
LRRTM4	80059	hgsc.bcm.edu	37	2	77746328	77746328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRRTM4	NM_024993	exon3	c.G667T	p.A223S	.	.	76	4	89	0	.	94
LRWD1	222229	hgsc.bcm.edu	37	7	102110227	102110227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LRWD1	NM_152892	exon11	c.G1340A	p.R447H	.	.	78	4	119	0	.	69
LSR	51599	hgsc.bcm.edu;bcgsc.ca	37	19	35758316	35758316	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LSR	NM_205834	exon9	c.G1593A	p.R531R	.	.	44	4	55	0	.	90
LUC7L	55692	hgsc.bcm.edu	37	16	242959	242959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	LUC7L	NM_201412	exon7	c.A743G	p.E248G	.	.	76	5	111	0	.	90
MAB21L2	10586	broad.mit.edu	37	4	151505259	151505259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAB21L2	NM_006439	exon1	c.T1078C	p.X360Q	.	.	178	5	258	0	.	91
MACF1	23499	hgsc.bcm.edu	37	1	39757653	39757653	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon17	c.C1872T	p.H624H	.	.	84	4	109	0	.	165
MACF1	23499	hgsc.bcm.edu;bcgsc.ca	37	1	39818713	39818713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MACF1	NM_012090	exon40	c.A5048G	p.K1683R	.	.	80	4	128	0	.	165
MADD	8567	hgsc.bcm.edu	37	11	47298398	47298398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MADD	NM_130474	exon5	c.T1079C	p.M360T	.	.	83	4	105	0	.	682
MAFB	9935	hgsc.bcm.edu	37	20	39316659	39316659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAFB	NM_005461	exon1	c.G832A	p.E278K	.	.	94	4	124	0	.	846
MAN1C1	57134	hgsc.bcm.edu	37	1	26080014	26080014	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAN1C1	NM_020379	exon5	c.C874T	p.L292L	.	.	102	5	158	0	.	91
MAP4	4134	broad.mit.edu	37	3	47917219	47917219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAP4	NM_001134364	exon10	c.T2278C	p.S760P	.	.	284	5	413	0	.	93
MAPK14	1432	hgsc.bcm.edu;bcgsc.ca	37	6	36027094	36027094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPK14	NM_139012	exon3	c.C275T	p.P92L	.	.	86	4	162	0	.	1444
MAPKBP1	23005	hgsc.bcm.edu	37	15	42107824	42107824	+	Silent	SNP	C	C	T	rs200313290	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	MAPKBP1,brain,glioma,0	MAPKBP1	NM_001128608	exon13	c.C1338T	p.D446D	.	.	25	2	47	0	C|0.999;A|0.000	589
MAPKBP1	23005	hgsc.bcm.edu;bcgsc.ca	37	15	42104835	42104835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPKBP1	NM_001128608	exon7	c.A620G	p.D207G	.	.	61	4	110	0	.	589
MAPT	4137	hgsc.bcm.edu;bcgsc.ca	37	17	44049223	44049223	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MAPT	NM_001123066	exon3	c.134-2A>G	.	.	.	57	4	85	0	.	91
MBD2	8932	hgsc.bcm.edu	37	18	51690975	51690975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MBD2	NM_003927	exon5	c.G1027A	p.A343T	.	.	94	4	132	0	.	650
MCM3AP	8888	hgsc.bcm.edu	37	21	47704014	47704014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM3AP	NM_003906	exon1	c.A1187G	p.E396G	.	.	91	4	165	0	.	291
MCM9	254394	hgsc.bcm.edu;bcgsc.ca	37	6	119147383	119147383	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCM9	NM_017696	exon11	c.A1888G	p.R630G	.	.	105	5	150	0	.	515
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85431253	85431253	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MCOLN2	NM_153259	exon2	c.G216C	p.K72N	.	.	127	23	186	0	.	94
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90438701	90438701	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MDN1	NM_014611	exon36	c.A5298G	p.L1766L	.	.	99	4	170	0	.	100
MDS2	259283	bcgsc.ca	37	1	23966201	23966201	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MDS2	.	.	.	.	.	.	65	4	90	0	.	638
MED12L	116931	hgsc.bcm.edu	37	3	150834201	150834201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED12L	NM_053002	exon2	c.C176T	p.A59V	.	.	93	5	138	0	.	576
MED12L	116931	hgsc.bcm.edu	37	3	150911344	150911344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED12L	NM_053002	exon14	c.T2036C	p.V679A	.	.	122	5	148	0	.	576
MED16	10025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	890977	890977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED16	NM_005481	exon2	c.G155A	p.R52H	.	.	52	12	82	0	.	186
MED24	9862	hgsc.bcm.edu	37	17	38187435	38187435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MED24	NM_014815	exon12	c.C1131A	p.S377R	.	.	107	5	163	0	.	187
MEP1B	4225	hgsc.bcm.edu	37	18	29800206	29800206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MEP1B	NM_005925	exon15	c.T2104C	p.X702R	.	.	86	4	122	0	.	92
METAP2	10988	hgsc.bcm.edu	37	12	95888769	95888769	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	METAP2	NM_006838	exon6	c.A627G	p.K209K	.	.	91	4	180	0	.	90
MGAT3	4248	hgsc.bcm.edu	37	22	39883578	39883578	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT3	NM_002409	exon2	c.T226C	p.S76P	.	.	50	4	53	0	.	90
MGAT5B	146664	hgsc.bcm.edu	37	17	74944796	74944796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon16	c.A2282G	p.E761G	.	.	107	5	147	0	.	93
MGAT5B	146664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74898718	74898718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MGAT5B	NM_198955	exon3	c.G444T	p.Q148H	.	.	117	23	207	0	.	93
MGME1	92667	hgsc.bcm.edu	37	20	17968897	17968897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_052865	exon4	c.G820A	p.A274T	.	.	97	4	151	0	.	.
MIB1	57534	bcgsc.ca	37	18	19399512	19399512	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MIB1	NM_020774	exon12	c.C1734T	p.I578I	.	.	96	5	174	0	.	526
MICAL2	9645	hgsc.bcm.edu	37	11	12278379	12278379	+	Silent	SNP	G	G	A	rs148904773		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MICAL2	NM_014632	exon24	c.G3003A	p.T1001T	.	.	69	4	104	0	G|1.000;A|0.000	92
MIER2	54531	hgsc.bcm.edu	37	19	311933	311933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MIER2	NM_017550	exon10	c.T896C	p.L299P	.	.	89	4	163	0	.	90
MLL4	8085	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	36222960	36222960	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL4	NM_014727	exon27	c.T5589C	p.A1863A	.	.	45	4	59	0	.	697
MLL5	55904	hgsc.bcm.edu	37	7	104681461	104681461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLL5	NM_018682	exon2	c.C62T	p.A21V	.	.	72	4	112	0	.	93
MLLT4	4301	hgsc.bcm.edu;bcgsc.ca	37	6	168307929	168307929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MLLT4	NM_001040000	exon13	c.A1729G	p.R577G	.	.	140	6	209	0	.	685
MMADHC	27249	hgsc.bcm.edu	37	2	150435986	150435986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MMADHC	NM_015702	exon4	c.A331G	p.R111G	.	.	95	4	139	0	.	226
MMP26	56547	hgsc.bcm.edu	37	11	5013445	5013445	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MMP26	NM_021801	exon6	c.A759G	p.G253G	.	.	98	4	187	0	.	226
MOBP	4336	hgsc.bcm.edu;bcgsc.ca	37	3	39554906	39554906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MOBP	NM_182935	exon4	c.A239G	p.K80R	.	.	69	4	134	0	.	515
MON1B	22879	hgsc.bcm.edu	37	16	77227387	77227387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MON1B	NM_014940	exon3	c.C188A	p.P63Q	.	.	95	4	157	0	.	90
MORN1	79906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2288951	2288951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MORN1	NM_024848	exon10	c.A956G	p.D319G	.	.	174	38	253	0	.	92
MPL	4352	hgsc.bcm.edu	37	1	43812146	43812146	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MPL	NM_005373	exon7	c.A1011G	p.E337E	.	.	103	5	156	0	.	9885
MROH6	642475	hgsc.bcm.edu;bcgsc.ca	37	8	144652226	144652226	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001100878	exon7	c.G1053T	p.V351V	.	.	82	5	79	0	.	.
MRPL34	64981	hgsc.bcm.edu	37	19	17416718	17416718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL34	NM_023937	exon1	c.G17T	p.G6V	.	.	93	4	169	0	.	90
MRPL40	64976	hgsc.bcm.edu	37	22	19423190	19423190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL40	NM_003776	exon4	c.A326G	p.E109G	.	.	99	5	123	0	.	90
MRPL43	84545	hgsc.bcm.edu	37	10	102739042	102739042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRPL43	NM_176792	exon5	c.G616A	p.V206I	.	.	119	4	197	0	.	91
MRS2	57380	hgsc.bcm.edu	37	6	24418379	24418379	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MRS2	NM_020662	exon8	c.T904C	p.L302L	.	.	139	6	234	0	.	68
MSLN	10232	hgsc.bcm.edu	37	16	815776	815776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MSLN	NM_005823	exon11	c.G881T	p.R294L	.	.	60	4	88	0	.	91
MSTN	2660	bcgsc.ca	37	2	190922001	190922001	+	Missense_Mutation	SNP	G	G	T	rs16823988	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MSTN	NM_005259	exon3	c.C1111A	p.R371S	.	.	152	6	225	1	G|0.998;C|0.002	650
MTA2	9219	hgsc.bcm.edu	37	11	62364251	62364251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTA2	NM_004739	exon9	c.A740G	p.K247R	.	.	66	4	94	0	.	92
MTCH1	23787	hgsc.bcm.edu	37	6	36946282	36946282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTCH1	NM_014341	exon3	c.A512G	p.K171R	.	.	100	4	123	0	.	227
MTHFR	4524	hgsc.bcm.edu;bcgsc.ca	37	1	11854524	11854524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTHFR	NM_005957	exon8	c.C1238T	p.P413L	.	.	125	5	159	0	.	90
MTMR14	64419	hgsc.bcm.edu	37	3	9714391	9714391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTMR14	NM_022485	exon7	c.G700T	p.D234Y	.	.	86	4	148	0	.	91
MTMR7	9108	hgsc.bcm.edu	37	8	17163419	17163419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTMR7	NM_004686	exon11	c.A1199G	p.D400G	.	.	91	4	173	0	.	91
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	8	125580779	125580779	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTSS1	NM_014751	exon8	c.461-2A>G	.	.	.	94	6	89	0	.	91
MTUS1	57509	hgsc.bcm.edu;bcgsc.ca	37	8	17541870	17541870	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MTUS1	NM_001001924	exon7	c.A2805G	p.A935A	.	.	79	4	169	0	.	92
MUC16	94025	hgsc.bcm.edu	37	19	8976277	8976277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC16	NM_024690	exon75	c.A42551G	p.D14184G	.	.	98	5	95	0	.	566
MUC20	200958	hgsc.bcm.edu	37	3	195453275	195453275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_152673	exon3	c.C1288A	p.P430T	.	.	86	4	118	0	.	.
MUC2	4583	hgsc.bcm.edu	37	11	1083289	1083289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC2	NM_002457	exon16	c.G2189T	p.G730V	.	.	74	4	62	0	.	90
MUC4	4585	broad.mit.edu	37	3	195513441	195513441	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUC4	NM_018406	exon2	c.T5010C	p.T1670T	.	.	388	5	585	2	.	90
MUTYH	4595	hgsc.bcm.edu;bcgsc.ca	37	1	45800076	45800076	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MUTYH	NM_012222	exon2	c.T144C	p.P48P	.	.	80	4	109	0	.	1083
MVD	4597	hgsc.bcm.edu;bcgsc.ca	37	16	88724396	88724396	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MVD	NM_002461	exon3	c.C183A	p.T61T	.	.	115	5	169	0	.	90
MYB	4602	hgsc.bcm.edu	37	6	135516923	135516923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYB	NM_001161659	exon9	c.G986A	p.S329N	.	.	77	4	120	0	.	838
MYBL1	4603	hgsc.bcm.edu	37	8	67492490	67492490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYBL1	NM_001080416	exon9	c.A979G	p.N327D	.	.	100	4	88	0	.	395
MYCBP2	23077	hgsc.bcm.edu	37	13	77672359	77672359	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYCBP2	NM_015057	exon56	c.A8930G	p.K2977R	.	.	96	4	188	0	.	236
MYH4	4622	broad.mit.edu	37	17	10356121	10356121	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYH4	NM_017533	exon25	c.T3240C	p.L1080L	.	.	647	10	912	0	.	102
MYH9	4627	hgsc.bcm.edu	37	22	36684860	36684860	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYH9	NM_002473	exon33	c.C4683T	p.N1561N	.	.	81	4	136	0	.	292
MYLIP	29116	hgsc.bcm.edu	37	6	16144041	16144041	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYLIP	NM_013262	exon5	c.C774T	p.T258T	.	.	90	4	132	0	.	91
MYO15A	51168	hgsc.bcm.edu	37	17	18024955	18024955	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO15A	NM_016239	exon2	c.A2841G	p.A947A	.	.	105	5	167	0	.	97
MYO15A	51168	hgsc.bcm.edu	37	17	18055165	18055165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO15A	NM_016239	exon40	c.A7793G	p.D2598G	.	.	85	4	137	0	.	97
MYO19	80179	hgsc.bcm.edu	37	17	34884035	34884035	+	Splice_Site	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO19	NM_025109	exon6	c.13-2A>G	.	.	.	50	4	75	0	.	23
MYO5C	55930	hgsc.bcm.edu	37	15	52540902	52540902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO5C	NM_018728	exon14	c.A1741G	p.S581G	.	.	94	6	179	0	.	145
MYO7A	4647	hgsc.bcm.edu	37	11	76922240	76922240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO7A	NM_000260	exon45	c.A6095G	p.E2032G	.	.	99	6	96	0	.	138
MYO7B	4648	hgsc.bcm.edu	37	2	128335802	128335802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYO7B	NM_001080527	exon9	c.G944T	p.S315I	.	.	116	5	168	0	.	47
MYOF	26509	hgsc.bcm.edu	37	10	95107502	95107502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYOF	NM_013451	exon37	c.T4121C	p.V1374A	.	.	85	5	133	0	.	93
MYOM2	9172	hgsc.bcm.edu;bcgsc.ca	37	8	2071186	2071186	+	Missense_Mutation	SNP	C	C	T	rs139807442	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYOM2	NM_003970	exon29	c.C3515T	p.T1172M	.	.	80	4	157	0	A|0.000;C|1.000;T|0.000	95
MYRIP	25924	hgsc.bcm.edu	37	3	40231439	40231439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYRIP	NM_015460	exon10	c.T1150C	p.S384P	.	.	140	6	228	0	.	94
MYT1L	23040	hgsc.bcm.edu	37	2	1915833	1915833	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	MYT1L	NM_015025	exon12	c.G1662T	p.T554T	.	.	75	4	110	0	.	95
N4BP1	9683	hgsc.bcm.edu	37	16	48595790	48595790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	N4BP1	NM_153029	exon2	c.T764C	p.L255P	.	.	137	6	227	0	.	22
NACC2	138151	hgsc.bcm.edu;bcgsc.ca	37	9	138905769	138905769	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NACC2	NM_144653	exon4	c.G1098A	p.L366L	.	.	72	4	93	0	.	90
NADKD1	133686	hgsc.bcm.edu	37	5	36207278	36207278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NADKD1	NM_001085411	exon8	c.A950G	p.K317R	.	.	104	5	116	0	.	92
NARG2	79664	hgsc.bcm.edu	37	15	60720770	60720770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NARG2	NM_024611	exon15	c.G2678A	p.C893Y	.	.	96	4	155	0	.	227
NAV2	89797	hgsc.bcm.edu	37	11	20077344	20077344	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV2	NM_001244963	exon20	c.T4741C	p.L1581L	.	.	73	4	112	0	.	96
NAV3	89795	bcgsc.ca	37	12	78553025	78553025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV3	NM_014903	exon23	c.A4828G	p.T1610A	.	.	140	5	237	0	.	279
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78598913	78598913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NAV3	NM_014903	exon38	c.C6967A	p.P2323T	.	.	58	4	69	0	.	279
NBAS	51594	hgsc.bcm.edu;bcgsc.ca	37	2	15613387	15613387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBAS	NM_015909	exon16	c.A1684G	p.R562G	.	.	90	5	145	0	.	94
NBEAL2	23218	hgsc.bcm.edu	37	3	47040568	47040568	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NBEAL2	NM_015175	exon24	c.G3504T	p.R1168R	.	.	69	4	116	0	.	69
NCAPG2	54892	broad.mit.edu	37	7	158456896	158456896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCAPG2	NM_017760	exon15	c.A1795G	p.R599G	.	.	273	8	378	1	.	272
NCBP1	4686	hgsc.bcm.edu;bcgsc.ca	37	9	100410502	100410502	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCBP1	NM_002486	exon8	c.C894A	p.P298P	.	.	54	4	104	0	.	90
NCOA2	10499	hgsc.bcm.edu;bcgsc.ca	37	8	71074948	71074948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA2	NM_006540	exon9	c.A974G	p.E325G	.	.	88	4	94	0	.	639
NCOA3	8202	bcgsc.ca	37	20	46276103	46276103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA3	NM_181659	exon18	c.G3539T	p.G1180V	.	.	76	4	102	1	.	229
NCOA5	57727	bcgsc.ca	37	20	44691004	44691004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NCOA5	NM_020967	exon8	c.A1675G	p.S559G	.	.	127	6	177	1	.	226
NDFIP2	54602	bcgsc.ca	37	13	80055533	80055533	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NDFIP2	NM_019080	exon1	c.G195T	p.A65A	.	.	55	4	89	0	.	91
NDUFA4	4697	bcgsc.ca	37	7	10978482	10978482	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NDUFA4	NM_002489	exon2	c.A84G	p.G28G	.	.	134	5	228	2	.	90
NDUFB7	4713	hgsc.bcm.edu	37	19	14677715	14677715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NDUFB7	NM_004146	exon2	c.A143G	p.D48G	.	.	79	4	113	0	.	91
NEB	4703	hgsc.bcm.edu	37	2	152402893	152402893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEB	NM_001271208	exon134	c.A20432G	p.D6811G	.	.	99	4	130	0	.	145
NEK11	79858	hgsc.bcm.edu;bcgsc.ca	37	3	130881262	130881262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK11	NM_024800	exon11	c.A973G	p.I325V	.	.	146	6	194	0	.	848
NEK4	6787	hgsc.bcm.edu;bcgsc.ca	37	3	52800369	52800369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEK4	NM_003157	exon3	c.T383C	p.L128P	.	.	97	4	117	0	.	358
NEO1	4756	hgsc.bcm.edu	37	15	73418904	73418904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NEO1	NM_001172623	exon4	c.A871G	p.T291A	.	.	96	4	128	0	.	116
NF1	4763	hgsc.bcm.edu	37	17	29490211	29490211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NF1	NM_001128147	exon4	c.A296G	p.K99R	.	.	100	4	111	0	.	3353
NFATC2	4773	hgsc.bcm.edu	37	20	50071199	50071199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFATC2	NM_012340	exon6	c.A1735G	p.M579V	.	.	98	5	120	0	.	92
NFATC3	4775	hgsc.bcm.edu	37	16	68156472	68156472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFATC3	NM_173163	exon2	c.A686G	p.Y229C	.	.	74	4	106	0	.	92
NFIC	4782	hgsc.bcm.edu	37	19	3381967	3381967	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NFIC	NM_001245004	exon2	c.C288T	p.I96I	.	.	74	4	89	0	.	226
NGEF	25791	bcgsc.ca	37	2	233746972	233746972	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NGEF	NM_019850	exon13	c.T1761C	p.S587S	.	.	61	6	111	0	.	313
NID1	4811	hgsc.bcm.edu	37	1	236228260	236228260	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NID1	NM_002508	exon1	c.A120G	p.G40G	.	.	118	9	83	0	.	154
NIPAL1	152519	bcgsc.ca	37	4	48032138	48032138	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NIPAL1	NM_207330	exon3	c.A315G	p.G105G	.	.	174	6	213	0	.	68
NIT2	56954	hgsc.bcm.edu	37	3	100073624	100073624	+	Missense_Mutation	SNP	T	T	C	rs17851799		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NIT2	NM_020202	exon9	c.T692C	p.V231A	.	.	89	4	136	0	T|1.000;|0.000	91
NKAIN3	286183	hgsc.bcm.edu	37	8	63492103	63492103	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_173688	exon2	c.A60G	p.S20S	.	.	99	5	112	0	.	.
NLRP11	204801	hgsc.bcm.edu	37	19	56320276	56320276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP11	NM_145007	exon5	c.A1700G	p.E567G	.	.	100	4	212	0	.	169
NLRP1	22861	hgsc.bcm.edu;bcgsc.ca	37	17	5425083	5425083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP1	NM_001033053	exon13	c.T3556C	p.F1186L	.	.	51	4	61	0	.	274
NLRP2	55655	hgsc.bcm.edu	37	19	55496563	55496563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP2	NM_017852	exon7	c.A2179G	p.T727A	.	.	68	4	72	0	.	120
NLRP2	55655	hgsc.bcm.edu	37	19	55497649	55497649	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP2	NM_017852	exon8	c.T2332C	p.L778L	.	.	97	4	157	0	.	120
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56565058	56565058	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NLRP5	NM_153447	exon13	c.C3183A	p.I1061I	.	.	89	20	148	0	.	162
NNT	23530	broad.mit.edu	37	5	43649291	43649291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NNT	NM_182977	exon11	c.T1487A	p.L496Q	.	.	441	9	521	2	.	92
NOD2	64127	hgsc.bcm.edu	37	16	50745876	50745876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOD2	NM_022162	exon4	c.A2054G	p.E685G	.	.	90	4	113	0	.	231
NOL4	8715	hgsc.bcm.edu;bcgsc.ca	37	18	31673528	31673528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOL4	NM_003787	exon5	c.A673G	p.M225V	.	.	72	4	103	0	.	93
NOP2	4839	hgsc.bcm.edu;bcgsc.ca	37	12	6669315	6669315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NOP2	NM_001258309	exon16	c.T1837C	p.F613L	.	.	67	4	128	0	.	92
NPC1L1	29881	hgsc.bcm.edu	37	7	44555532	44555532	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPC1L1	NM_013389	exon19	c.T3747C	p.P1249P	.	.	75	4	111	0	.	94
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110926056	110926056	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NPHP1	NM_207181	exon6	c.A597G	p.E199E	.	.	68	20	119	0	.	92
NR0B2	8431	hgsc.bcm.edu	37	1	27240242	27240242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NR0B2	NM_021969	exon1	c.G190T	p.A64S	.	.	41	4	66	0	.	186
NR1H4	9971	bcgsc.ca	37	12	100904587	100904587	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NR1H4	NM_001206992	exon2	c.G141T	p.L47L	.	.	121	6	232	1	.	227
NR1H4	9971	hgsc.bcm.edu	37	12	100955731	100955731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NR1H4	NM_001206993	exon8	c.C1177A	p.Q393K	.	.	90	5	181	0	.	227
NRIP1	8204	hgsc.bcm.edu	37	21	16337049	16337049	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NRIP1	NM_003489	exon4	c.A3465G	p.K1155K	.	.	85	4	110	0	.	186
NRK	203447	bcgsc.ca	37	X	105137854	105137854	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NRK	NM_198465	exon6	c.G408T	p.S136S	.	.	148	6	141	1	.	630
NSD1	64324	hgsc.bcm.edu	37	5	176721162	176721162	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NSD1	NM_022455	exon23	c.T6793C	p.S2265P	.	.	54	4	92	0	.	188
NSMAF	8439	hgsc.bcm.edu	37	8	59520364	59520364	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NSMAF	NM_001144772	exon11	c.C816A	p.R272R	.	.	122	5	88	1	.	91
NUP188	23511	hgsc.bcm.edu	37	9	131750464	131750464	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NUP188	NM_015354	exon24	c.T2532C	p.H844H	.	.	98	4	155	0	.	207
NYNRIN	57523	hgsc.bcm.edu	37	14	24868547	24868547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	NYNRIN	NM_025081	exon2	c.A95G	p.Q32R	.	.	105	6	137	0	.	3
ODF3	113746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	197590	197590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ODF3	NM_053280	exon3	c.C139A	p.R47S	.	.	71	10	85	0	.	493
OR10G2	26534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	22102803	22102803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR10G2	NM_001005466	exon1	c.A196G	p.I66V	.	.	290	71	447	0	.	69
OR2B3	442184	hgsc.bcm.edu	37	6	29054341	29054341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR2B3	NM_001005226	exon1	c.A685G	p.R229G	.	.	84	4	107	0	.	1
OR2K2	26248	hgsc.bcm.edu	37	9	114090233	114090233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR2K2	NM_205859	exon1	c.A481G	p.S161G	.	.	54	4	58	0	.	69
OR4K13	390433	hgsc.bcm.edu	37	14	20502875	20502875	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4K13	NM_001004714	exon1	c.T43C	p.L15L	.	.	98	4	139	0	.	70
OR4S1	256148	bcgsc.ca	37	11	48327904	48327904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4S1	NM_001004725	exon1	c.A130G	p.I44V	.	.	201	6	318	1	.	69
OR4S1	256148	hgsc.bcm.edu;bcgsc.ca	37	11	48328087	48328087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR4S1	NM_001004725	exon1	c.T313C	p.F105L	.	.	81	4	135	0	.	69
OR52E2	119678	hgsc.bcm.edu	37	11	5080303	5080303	+	Silent	SNP	A	A	G	rs201562104		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR52E2	NM_001005164	exon1	c.T555C	p.G185G	.	.	120	5	150	0	A|1.000;G|0.000	71
OR52N5	390075	hgsc.bcm.edu	37	11	5799494	5799494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR52N5	NM_001001922	exon1	c.T371C	p.L124P	.	.	107	5	170	0	.	70
OR5A2	219981	hgsc.bcm.edu	37	11	59189652	59189652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR5A2	NM_001001954	exon1	c.A775G	p.M259V	.	.	89	4	120	0	.	68
OR6F1	343169	hgsc.bcm.edu	37	1	247875696	247875696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR6F1	NM_001005286	exon1	c.A362G	p.D121G	.	.	100	4	101	0	.	68
OR6V1	346517	bcgsc.ca	37	7	142750176	142750176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR6V1	NM_001001667	exon1	c.T739C	p.F247L	.	.	227	7	361	0	.	23
OR8I2	120586	hgsc.bcm.edu	37	11	55861280	55861280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OR8I2	NM_001003750	exon1	c.T497C	p.L166S	.	.	79	4	132	0	.	113
ORC5	5001	hgsc.bcm.edu	37	7	103808859	103808859	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ORC5	NM_181747	exon9	c.T939A	p.T313T	.	.	74	4	102	0	.	206
OS9	10956	bcgsc.ca	37	12	58112867	58112867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OS9	NM_001261420	exon12	c.T1505C	p.I502T	.	.	148	5	212	0	.	493
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45894019	45894019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSBPL7	NM_145798	exon10	c.C838A	p.L280M	.	.	63	14	94	0	.	68
OSGIN2	734	hgsc.bcm.edu;bcgsc.ca	37	8	90921887	90921887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	OSGIN2	NM_001126111	exon2	c.C137T	p.P46L	.	.	121	6	141	0	.	68
OTUD3	23252	hgsc.bcm.edu;bcgsc.ca	37	1	20224100	20224100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015207	exon4	c.A551G	p.D184G	.	.	75	4	89	0	.	.
P2RX2	22953	hgsc.bcm.edu	37	12	133197680	133197680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	P2RX2	NM_170683	exon8	c.C868T	p.P290S	.	.	80	4	94	0	.	68
P2RY8	286530	hgsc.bcm.edu	37	X	1585322	1585322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	P2RY8	NM_178129	exon2	c.T130C	p.S44P	.	.	100	4	94	0	.	522
PABPC1L	80336	hgsc.bcm.edu;bcgsc.ca	37	20	43552887	43552887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PABPC1L	NM_001124756	exon7	c.C962T	p.T321I	.	.	44	4	63	0	.	47
PACS1	55690	ucsc.edu	37	11	66010737	66010737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PACS1	NM_018026	exon24	c.A2878G	p.S960G	.	.	51	4	75	0	.	74
PAN2	9924	hgsc.bcm.edu	37	12	56722129	56722129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PAN2	NM_014871	exon4	c.G466T	p.E156X	.	.	83	4	157	0	.	702
PARP9	83666	bcgsc.ca	37	3	122255151	122255151	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PARP9	NM_031458	exon10	c.T2049C	p.F683F	.	.	113	6	135	1	.	525
PASK	23178	hgsc.bcm.edu	37	2	242063478	242063478	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PASK	NM_015148	exon11	c.A2790G	p.K930K	.	.	110	5	165	0	.	536
PCDH17	27253	hgsc.bcm.edu	37	13	58209048	58209048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH17	NM_001040429	exon1	c.T2368C	p.S790P	.	.	67	7	108	0	.	97
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30725244	30725244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDH7	NM_032457	exon1	c.G2200T	p.D734Y	.	.	141	35	238	0	.	229
PCDHB10	56126	bcgsc.ca	37	5	140572131	140572131	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDHB10	NM_018930	exon1	c.T6C	p.A2A	.	.	277	7	329	0	.	92
PCDHB2	56133	hgsc.bcm.edu	37	5	140475117	140475117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCDHB2	NM_018936	exon1	c.T743C	p.L248P	.	.	83	4	81	0	.	96
PCM1	5108	hgsc.bcm.edu	37	8	17822267	17822267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCM1	NM_006197	exon18	c.A2845G	p.T949A	.	.	94	4	183	0	.	742
PCOLCE2	26577	hgsc.bcm.edu	37	3	142607734	142607734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCOLCE2	NM_013363	exon1	c.G5A	p.R2K	.	.	89	4	85	0	.	93
PCYT1B	9468	hgsc.bcm.edu	37	X	24605380	24605380	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PCYT1B	NM_001163265	exon5	c.T543C	p.V181V	.	.	91	4	101	0	.	130
PDE10A	10846	hgsc.bcm.edu	37	6	165801824	165801824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDE10A	NM_001130690	exon17	c.A1775G	p.E592G	.	.	89	5	119	0	.	519
PDLIM3	27295	hgsc.bcm.edu	37	4	186446276	186446276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDLIM3	NM_001257962	exon2	c.T143C	p.V48A	.	.	75	4	107	0	.	92
PDLIM7	9260	hgsc.bcm.edu	37	5	176916442	176916442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDLIM7	NM_005451	exon9	c.G821A	p.S274N	.	.	125	5	149	0	.	153
PDXDC1	23042	hgsc.bcm.edu;bcgsc.ca	37	16	15128199	15128199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PDXDC1	NM_015027	exon20	c.G1869T	p.E623D	.	.	73	4	97	0	.	91
PEG3	5178	bcgsc.ca	37	19	57325671	57325671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PEG3	NM_001146184	exon9	c.T4139C	p.V1380A	.	.	117	5	205	2	.	164
PELP1	27043	hgsc.bcm.edu	37	17	4607242	4607242	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PELP1	NM_014389	exon1	c.G165A	p.P55P	.	.	80	4	138	0	.	24
PEX1	5189	bcgsc.ca	37	7	92122268	92122268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PEX1	NM_000466	exon20	c.A3206G	p.Q1069R	.	.	130	5	171	0	.	91
PFKFB3	5209	hgsc.bcm.edu	37	10	6258145	6258145	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKFB3	NM_004566	exon4	c.A357G	p.G119G	.	.	60	4	67	0	.	117
PFKL	5211	hgsc.bcm.edu	37	21	45744485	45744485	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKL	NM_002626	exon17	c.G1762T	p.G588W	.	.	95	5	148	0	.	251
PFKM	5213	hgsc.bcm.edu	37	12	48526741	48526741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PFKM	NM_001166686	exon7	c.A541G	p.I181V	.	.	143	6	255	0	.	254
PGM2	55276	hgsc.bcm.edu	37	4	37831602	37831602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PGM2	NM_018290	exon2	c.A98G	p.E33G	.	.	124	5	161	0	.	91
PHC2	1912	hgsc.bcm.edu	37	1	33794700	33794700	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHC2	NM_198040	exon13	c.A2193G	p.T731T	.	.	78	4	88	0	.	227
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27251158	27251158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF12	NM_020889	exon4	c.A484G	p.S162G	.	.	186	8	275	0	.	91
PHF19	26147	hgsc.bcm.edu	37	9	123631484	123631484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHF19	NM_015651	exon6	c.A590G	p.Y197C	.	.	75	4	118	0	.	136
PHKA1	5255	hgsc.bcm.edu	37	X	71822975	71822975	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHKA1	NM_002637	exon26	c.C2911T	p.R971X	.	.	71	4	79	0	.	134
PHKB	5257	hgsc.bcm.edu	37	16	47698853	47698853	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHKB	NM_000293	exon25	c.A2394G	p.P798P	.	.	88	4	124	0	.	154
PHLDB1	23187	bcgsc.ca	37	11	118516467	118516467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PHLDB1	NM_001144758	exon17	c.A3431G	p.D1144G	.	.	135	6	275	1	.	90
PI4KA	5297	hgsc.bcm.edu	37	22	21159287	21159287	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PI4KA	NM_058004	exon11	c.G1335T	p.M445I	.	.	94	4	135	0	.	454
PIGS	94005	hgsc.bcm.edu;bcgsc.ca	37	17	26888474	26888474	+	Missense_Mutation	SNP	G	G	T	rs116094938	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIGS	NM_033198	exon6	c.C642A	p.S214R	.	.	82	5	141	0	G|1.000;A|0.000	289
PIH1D1	55011	hgsc.bcm.edu	37	19	49950318	49950318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIH1D1	NM_017916	exon7	c.C650A	p.P217H	.	.	63	4	117	0	.	90
PIKFYVE	200576	bcgsc.ca	37	2	209179933	209179933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIKFYVE	NM_015040	exon15	c.C1843T	p.H615Y	.	.	93	4	155	1	.	583
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca	37	17	36934625	36934625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2B	NM_003559	exon6	c.G655A	p.G219S	.	.	55	4	71	0	.	266
PIP4K2C	79837	hgsc.bcm.edu;bcgsc.ca	37	12	57989718	57989718	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PIP4K2C	NM_001146258	exon4	c.T417C	p.G139G	.	.	87	4	146	0	.	689
PKD1L2	114780	hgsc.bcm.edu	37	16	81219117	81219117	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKD1L2	NM_001076780	exon11	c.G1977A	p.W659X	.	.	96	5	87	0	.	92
PKDREJ	10343	hgsc.bcm.edu;bcgsc.ca	37	22	46656423	46656423	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PKDREJ	NM_006071	exon1	c.A2797G	p.M933V	.	.	84	6	114	0	.	156
PLA1A	51365	hgsc.bcm.edu	37	3	119334916	119334916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLA1A	NM_015900	exon6	c.A722G	p.D241G	.	.	84	4	128	0	.	92
PLAC1	10761	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	133700150	133700150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLAC1	NM_021796	exon3	c.C563T	p.P188L	.	.	127	86	96	1	.	131
PLAGL1	5325	bcgsc.ca	37	6	144262787	144262787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLAGL1	NM_001080953	exon7	c.T1166C	p.L389P	.	.	81	5	157	1	.	91
PLB1	151056	hgsc.bcm.edu	37	2	28843759	28843759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLB1	NM_153021	exon49	c.G3441T	p.K1147N	.	.	57	4	124	0	.	141
PLCB4	5332	hgsc.bcm.edu	37	20	9438138	9438138	+	Splice_Site	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLCB4	NM_001172646	exon33	c.3072+2T>A	.	.	.	195	8	314	0	.	274
PLCH1	23007	hgsc.bcm.edu	37	3	155200108	155200108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLCH1	NM_001130960	exon23	c.A3731G	p.K1244R	.	.	83	4	127	0	.	151
PLD2	5338	bcgsc.ca	37	17	4721846	4721846	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLD2	NM_001243108	exon20	c.T2067C	p.G689G	.	.	58	5	100	2	.	291
PLD3	23646	mdanderson.org	37	19	40873760	40873760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLD3	NM_012268	exon6	c.C403A	p.H135N	.	.	9	2	17	0	.	228
PLEC	5339	hgsc.bcm.edu;bcgsc.ca	37	8	144991777	144991777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEC	NM_201380	exon32	c.T12623C	p.L4208P	.	.	144	6	127	0	.	141
PLEKHM2	23207	hgsc.bcm.edu	37	1	16051847	16051847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLEKHM2	NM_015164	exon8	c.T748C	p.S250P	.	.	113	5	164	0	.	23
PLEKHS1	79949	hgsc.bcm.edu	37	10	115534677	115534677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_024889	exon10	c.A872G	p.Q291R	.	.	74	4	114	0	.	.
PLS3	5358	hgsc.bcm.edu	37	X	114883870	114883870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLS3	NM_005032	exon16	c.A1882G	p.K628E	.	.	100	4	103	0	.	193
PLXNA3	55558	hgsc.bcm.edu	37	X	153699869	153699869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLXNA3	NM_017514	exon32	c.A5408G	p.D1803G	.	.	78	4	92	0	.	132
PLXNA4	91584	hgsc.bcm.edu	37	7	131865424	131865424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PLXNA4	NM_020911	exon19	c.A3560G	p.E1187G	.	.	87	5	132	0	.	91
PMEL	6490	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56351868	56351868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PMEL	NM_001200054	exon5	c.G470A	p.G157D	.	.	34	4	62	0	.	92
PNLIPRP2	5408	bcgsc.ca	37	10	118390777	118390777	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PNLIPRP2	.	.	.	.	.	.	84	4	135	0	.	67
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50921165	50921165	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLD1	NM_002691	exon27	c.C3285T	p.L1095L	.	.	174	52	255	0	.	840
POLE3	54107	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	116172342	116172342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLE3	NM_017443	exon3	c.A145G	p.T49A	.	.	43	4	67	0	.	227
POLR1A	25885	hgsc.bcm.edu	37	2	86332884	86332884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POLR1A	NM_015425	exon1	c.A16G	p.N6D	.	.	88	4	140	0	.	93
POMT2	29954	mdanderson.org	37	14	77744829	77744829	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POMT2	NM_013382	exon20	c.G2055A	p.L685L	.	.	15	2	18	0	.	91
POP1	10940	ucsc.edu;bcgsc.ca	37	8	99170220	99170220	+	Silent	SNP	G	G	T	rs200939314	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POP1	NM_001145860	exon16	c.G2796T	p.A932A	.	.	32	4	29	0	G|0.999;A|0.000	154
POU6F2	11281	hgsc.bcm.edu;bcgsc.ca	37	7	39500146	39500146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	POU6F2	NM_007252	exon10	c.A1403G	p.N468S	.	.	161	8	234	0	.	90
PPFIA3	8541	bcgsc.ca	37	19	49638095	49638095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPFIA3	NM_003660	exon13	c.G1443T	p.E481D	.	.	58	4	85	0	.	226
PPIE	10450	hgsc.bcm.edu	37	1	40218656	40218656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPIE	NM_006112	exon9	c.T769C	p.W257R	.	.	99	5	153	0	.	90
PPP1CA	5499	bcgsc.ca	37	11	67169205	67169205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPP1CA	NM_002708	exon1	c.C49A	p.L17M	.	.	39	4	55	0	.	659
PPP1R32	220004	hgsc.bcm.edu	37	11	61249330	61249330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001170753	exon2	c.A49G	p.S17G	.	.	44	4	50	0	.	.
PPP2R3C	55012	bcgsc.ca	37	14	35554932	35554932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPP2R3C	NM_017917	exon13	c.A1226G	p.Q409R	.	.	98	4	146	1	.	227
PPP4R4	57718	hgsc.bcm.edu;bcgsc.ca	37	14	94716580	94716580	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PPP4R4	NM_058237	exon15	c.A1683G	p.E561E	.	.	66	4	118	0	.	94
PRDM4	11108	hgsc.bcm.edu	37	12	108140127	108140127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRDM4	NM_012406	exon6	c.C1201A	p.P401T	.	.	89	4	157	0	.	154
PRLH	51052	hgsc.bcm.edu	37	2	238475761	238475761	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRLH	NM_015893	exon2	c.A207G	p.R69R	.	.	121	4	237	0	.	90
PRMT10	90826	hgsc.bcm.edu	37	4	148589795	148589795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRMT10	NM_138364	exon6	c.C848T	p.T283I	.	.	98	5	122	0	.	91
PROB1	389333	hgsc.bcm.edu	37	5	138730638	138730638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001161546	exon1	c.G133A	p.D45N	.	.	95	4	114	0	.	.
PROX2	283571	hgsc.bcm.edu	37	14	75330181	75330181	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PROX2	NM_001080408	exon1	c.T357C	p.P119P	.	.	89	5	118	0	.	69
PRPF40B	25766	mdanderson.org	37	12	50035799	50035799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRPF40B	NM_001031698	exon19	c.T1876C	p.F626L	.	.	20	3	16	0	.	95
PRRC1	133619	hgsc.bcm.edu	37	5	126866068	126866068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRRC1	NM_130809	exon5	c.C737A	p.P246H	.	.	59	4	79	0	.	68
PRRC2C	23215	broad.mit.edu;bcgsc.ca	37	1	171510031	171510031	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_015172	exon16	c.A3420G	p.K1140K	.	.	207	7	196	0	.	.
PRSS33	260429	hgsc.bcm.edu	37	16	2834720	2834720	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRSS33	NM_152891	exon6	c.C768A	p.A256A	.	.	99	4	143	0	.	90
PRSS36	146547	hgsc.bcm.edu	37	16	31151659	31151659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PRSS36	NM_173502	exon14	c.A2245G	p.T749A	.	.	98	4	162	0	.	91
PRSS8	5652	hgsc.bcm.edu;bcgsc.ca	37	16	31143805	31143805	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_002773	exon5	c.T650C	p.V217A	.	.	92	7	121	0	.	.
PSMA8	143471	hgsc.bcm.edu	37	18	23713973	23713973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSMA8	NM_001025096	exon1	c.A44G	p.D15G	.	.	122	5	200	0	.	91
PSMD6	9861	hgsc.bcm.edu	37	3	64005066	64005066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSMD6	NM_001271779	exon4	c.G562T	p.G188C	.	.	94	4	152	0	.	91
PSME4	23198	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54101524	54101524	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PSME4	NM_014614	exon43	c.A5052G	p.K1684K	.	.	180	46	251	1	.	275
PTCH2	8643	hgsc.bcm.edu	37	1	45294290	45294290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTCH2	NM_001166292	exon12	c.A1478G	p.E493G	.	.	101	5	135	0	.	851
PTPN12	5782	bcgsc.ca	37	7	77236567	77236567	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPN12	NM_002835	exon9	c.A711G	p.R237R	.	.	220	7	312	2	.	228
PTPN13	5783	hgsc.bcm.edu;bcgsc.ca	37	4	87687669	87687669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPN13	NM_080685	exon27	c.A4343G	p.Q1448R	.	.	79	4	119	0	.	230
PTPRH	5794	hgsc.bcm.edu;bcgsc.ca	37	19	55708079	55708079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PTPRH	NM_002842	exon10	c.C2068A	p.Q690K	.	.	75	4	110	0	.	138
PTPRQ	374462	hgsc.bcm.edu	37	12	80998862	80998862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001145026	exon24	c.T4118C	p.V1373A	.	.	86	4	132	0	.	.
PWP2	5822	hgsc.bcm.edu	37	21	45548277	45548277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PWP2	NM_005049	exon19	c.A2509G	p.R837G	.	.	89	4	120	0	.	91
PYCR1	5831	hgsc.bcm.edu	37	17	79892251	79892251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PYCR1	NM_153824	exon6	c.T748C	p.F250L	.	.	56	4	127	0	.	68
PYROXD1	79912	bcgsc.ca	37	12	21609026	21609026	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PYROXD1	NM_024854	exon7	c.A747G	p.K249K	.	.	232	8	318	0	.	23
PZP	5858	hgsc.bcm.edu	37	12	9315205	9315205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	PZP	NM_002864	exon22	c.A2776G	p.T926A	.	.	73	4	142	0	.	157
QRICH1	54870	hgsc.bcm.edu	37	3	49094779	49094779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QRICH1	NM_198880	exon3	c.A854G	p.D285G	.	.	174	7	193	0	.	91
QSER1	79832	hgsc.bcm.edu;bcgsc.ca	37	11	32956867	32956867	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	QSER1	NM_001076786	exon4	c.T3676C	p.L1226L	.	.	54	4	52	0	.	95
RAB26	25837	hgsc.bcm.edu	37	16	2203391	2203391	+	Missense_Mutation	SNP	A	A	G	rs199768285	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAB26	NM_014353	exon9	c.A740G	p.E247G	.	.	78	5	115	0	A|0.999;C|0.001	227
RAD18	56852	bcgsc.ca	37	3	9005064	9005064	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAD18	NM_020165	exon1	c.C6T	p.D2D	.	.	129	6	248	0	.	663
RAD54B	25788	hgsc.bcm.edu	37	8	95470643	95470643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAD54B	NM_001205262	exon3	c.T157C	p.F53L	.	.	79	5	92	0	.	539
RAG2	5897	bcgsc.ca	37	11	36614832	36614832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAG2	NM_001243785	exon3	c.A887G	p.K296R	.	.	302	7	482	2	.	95
RANBP9	10048	hgsc.bcm.edu	37	6	13642722	13642722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RANBP9	NM_005493	exon7	c.A1214G	p.K405R	.	.	64	4	76	0	.	414
RAP1GDS1	5910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99300176	99300176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAP1GDS1	NM_001100426	exon5	c.A373G	p.R125G	.	.	65	15	129	0	.	660
RAPGEF1	2889	hgsc.bcm.edu	37	9	134471699	134471699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAPGEF1	NM_198679	exon14	c.A2171G	p.E724G	.	.	113	5	162	0	.	849
RAPGEF4	11069	bcgsc.ca	37	2	173600726	173600726	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RAPGEF4	NM_007023	exon1	c.C15T	p.H5H	.	.	38	4	75	0	.	274
RASGRF1	5923	hgsc.bcm.edu	37	15	79339198	79339198	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RASGRF1	NM_001145648	exon5	c.G768T	p.V256V	.	.	74	4	133	0	.	662
RBM14	10432	hgsc.bcm.edu	37	11	66392365	66392365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBM14	NM_006328	exon2	c.T1018C	p.S340P	.	.	90	4	152	0	.	92
RBM20	282996	hgsc.bcm.edu	37	10	112595736	112595736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001134363	exon14	c.A3684G	p.X1228W	.	.	71	4	125	0	.	.
RBMS1	5937	bcgsc.ca	37	2	161141317	161141317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBMS1	NM_016836	exon9	c.C869A	p.P290H	.	.	181	6	286	1	.	90
RBMS1	5937	hgsc.bcm.edu;bcgsc.ca	37	2	161133886	161133886	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RBMS1	NM_016836	exon12	c.T1071C	p.P357P	.	.	95	6	146	0	.	90
RECK	8434	hgsc.bcm.edu	37	9	36063817	36063817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RECK	NM_021111	exon5	c.G297A	p.W99X	.	.	85	4	159	0	.	93
RELA	5970	hgsc.bcm.edu	37	11	65422122	65422122	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELA	NM_021975	exon11	c.T1383C	p.A461A	.	.	91	4	132	0	.	872
RELN	5649	hgsc.bcm.edu;bcgsc.ca	37	7	103180823	103180823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RELN	NM_173054	exon44	c.T6751C	p.S2251P	.	.	47	4	83	0	.	574
REV3L	5980	hgsc.bcm.edu	37	6	111697828	111697828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	REV3L	NM_002912	exon13	c.T1730C	p.F577S	.	.	67	4	96	0	.	294
RFX6	222546	hgsc.bcm.edu	37	6	117198575	117198575	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RFX6	NM_173560	exon1	c.A137G	p.Y46C	.	.	79	4	147	0	.	93
RGMA	56963	bcgsc.ca	37	15	93588433	93588433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RGMA	NM_001166283	exon4	c.T1172C	p.L391P	.	.	66	6	112	1	.	90
RGSL1	353299	hgsc.bcm.edu	37	1	182443271	182443271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RGSL1	NM_001137669	exon6	c.T1025C	p.L342P	.	.	136	5	121	0	.	226
RHCG	51458	hgsc.bcm.edu	37	15	90023578	90023578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RHCG	NM_016321	exon4	c.T584C	p.V195A	.	.	125	5	177	0	.	226
RHEBL1	121268	hgsc.bcm.edu	37	12	49459212	49459212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RHEBL1	NM_144593	exon7	c.A383G	p.E128G	.	.	75	4	113	0	.	659
RIMS1	22999	hgsc.bcm.edu;bcgsc.ca	37	6	72968750	72968750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RIMS1	NM_014989	exon18	c.T2989C	p.S997P	.	.	80	4	138	0	.	144
RLF	6018	hgsc.bcm.edu	37	1	40705226	40705226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RLF	NM_012421	exon8	c.T4852C	p.C1618R	.	.	146	6	233	0	.	93
RNF123	63891	bcgsc.ca	37	3	49737118	49737118	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF123	NM_022064	exon12	c.C897T	p.D299D	.	.	98	5	165	0	.	584
RNF146	81847	hgsc.bcm.edu;bcgsc.ca	37	6	127608496	127608496	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF146	NM_001242850	exon3	c.T738C	p.S246S	.	.	91	4	142	0	.	226
RNF17	56163	hgsc.bcm.edu	37	13	25442834	25442834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF17	NM_031277	exon31	c.C4258T	p.H1420Y	.	.	125	5	185	0	.	228
RNF180	285671	broad.mit.edu	37	5	63626117	63626117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF180	NM_001113561	exon7	c.A1463G	p.N488S	.	.	339	9	449	2	.	90
RNF31	55072	hgsc.bcm.edu	37	14	24617329	24617329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF31	NM_017999	exon2	c.C337A	p.Q113K	.	.	83	5	82	0	.	90
RNF31	55072	ucsc.edu;bcgsc.ca	37	14	24620086	24620086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNF31	NM_017999	exon8	c.A1477G	p.S493G	.	.	28	4	40	0	.	90
RNPS1	10921	hgsc.bcm.edu	37	16	2305610	2305610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RNPS1	NM_006711	exon7	c.G794T	p.R265M	.	.	91	4	175	0	.	91
ROBO2	6092	hgsc.bcm.edu;bcgsc.ca	37	3	77612404	77612404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ROBO2	NM_002942	exon11	c.A1606G	p.N536D	.	.	117	6	179	0	.	328
RPAP2	79871	hgsc.bcm.edu	37	1	92789692	92789692	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPAP2	NM_024813	exon8	c.A1215G	p.E405E	.	.	98	4	151	0	.	91
RPAP2	79871	hgsc.bcm.edu	37	1	92789911	92789911	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPAP2	NM_024813	exon8	c.C1434T	p.T478T	.	.	89	4	136	0	.	91
RPL7A	6130	hgsc.bcm.edu	37	9	136217542	136217542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPL7A	NM_000972	exon6	c.A586G	p.R196G	.	.	78	4	107	0	.	90
RPS6KC1	26750	broad.mit.edu	37	1	213445880	213445880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPS6KC1	NM_012424	exon15	c.A3104G	p.N1035S	.	.	995	12	908	1	.	417
RPUSD2	27079	hgsc.bcm.edu	37	15	40865856	40865856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RPUSD2	NM_152260	exon3	c.A1034G	p.E345G	.	.	92	4	118	0	.	91
RRN3P2	653390	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	320	7	518	1	.	.
RRP12	23223	hgsc.bcm.edu;bcgsc.ca	37	10	99148093	99148093	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RRP12	NM_015179	exon8	c.G933T	p.L311L	.	.	71	4	93	0	.	92
RSF1	51773	bcgsc.ca	37	11	77451775	77451775	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RSF1	NM_016578	exon5	c.578+1G>A	.	.	.	143	5	212	1	.	93
RUNDC1	146923	hgsc.bcm.edu	37	17	41142394	41142394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RUNDC1	NM_173079	exon4	c.A917G	p.K306R	.	.	98	4	155	0	.	90
RXRB	6257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	33162736	33162736	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RXRB	NM_001270401	exon9	c.T1452C	p.P484P	.	.	171	8	294	0	.	189
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237666628	237666628	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR2	NM_001035	exon22	c.A2436T	p.K812N	.	.	204	31	175	0	.	158
RYR3	6263	hgsc.bcm.edu	37	15	34040731	34040731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	RYR3	NM_001243996	exon55	c.G8199T	p.Q2733H	.	.	75	4	71	0	.	520
S1PR5	53637	hgsc.bcm.edu	37	19	10624905	10624905	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	S1PR5	NM_030760	exon2	c.G783T	p.V261V	.	.	78	5	96	0	.	523
SARS	6301	ucsc.edu;bcgsc.ca	37	1	109778018	109778018	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SARS	NM_006513	exon7	c.A934G	p.T312A	.	.	39	5	35	0	.	90
SCAND3	114821	hgsc.bcm.edu	37	6	28540398	28540398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCAND3	NM_052923	exon4	c.T3268C	p.S1090P	.	.	123	5	126	0	.	91
SCD5	79966	hgsc.bcm.edu;bcgsc.ca	37	4	83602015	83602015	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCD5	NM_024906	exon3	c.A414G	p.S138S	.	.	86	4	133	0	.	91
SCN2B	6327	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118037686	118037686	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCN2B	NM_004588	exon4	c.G564A	p.E188E	.	.	222	65	329	2	.	90
SCRN3	79634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175269041	175269041	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SCRN3	NM_024583	exon5	c.A752C	p.K251T	.	.	76	21	107	0	.	91
SDHA	6389	broad.mit.edu;bcgsc.ca	37	5	251503	251503	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SDHA	NM_004168	exon13	c.A1714T	p.M572L	.	.	355	73	446	1	.	226
SEMA3A	10371	hgsc.bcm.edu	37	7	83640613	83640613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEMA3A	NM_006080	exon8	c.A811G	p.N271D	.	.	63	4	90	0	.	156
SEMA7A	8482	hgsc.bcm.edu	37	15	74710280	74710280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEMA7A	NM_003612	exon4	c.A403G	p.R135G	.	.	74	4	110	0	.	153
SEPT9	10801	hgsc.bcm.edu;bcgsc.ca	37	17	75471676	75471676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SEPT9	NM_001113495	exon1	c.T76C	p.S26P	.	.	81	4	153	0	.	659
SERPINA10	51156	hgsc.bcm.edu;bcgsc.ca	37	14	94750485	94750485	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA10	NM_001100607	exon5	c.A1152G	p.Q384Q	.	.	62	4	91	0	.	228
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94845816	94845816	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINA1	NM_001127701	exon6	c.C1050T	p.P350P	.	.	53	6	79	0	.	226
SERPINE1	5054	hgsc.bcm.edu	37	7	100773929	100773929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINE1	NM_000602	exon3	c.A499G	p.T167A	.	.	91	4	153	0	.	652
SERPINH1	871	hgsc.bcm.edu	37	11	75279838	75279838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SERPINH1	NM_001207014	exon4	c.T685C	p.S229P	.	.	121	5	237	0	.	228
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122247600	122247600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SETD1B	NM_015048	exon5	c.C749A	p.T250K	.	.	57	7	71	0	.	86
SETX	23064	hgsc.bcm.edu	37	9	135204839	135204839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SETX	NM_015046	exon10	c.A2146G	p.K716E	.	.	93	4	99	0	.	93
SFI1	9814	hgsc.bcm.edu	37	22	31927044	31927044	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFI1	NM_001007467	exon4	c.A267G	p.R89R	.	.	93	4	139	0	.	90
SFMBT2	57713	hgsc.bcm.edu	37	10	7247790	7247790	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFMBT2	NM_001029880	exon12	c.A1431G	p.P477P	.	.	107	5	189	0	.	141
SFTA2	389376	hgsc.bcm.edu;bcgsc.ca	37	6	30899268	30899268	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SFTA2	NM_205854	exon3	c.A234G	p.T78T	.	.	79	4	137	0	.	90
SH2B1	25970	hgsc.bcm.edu	37	16	28883910	28883910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SH2B1	NM_001145796	exon8	c.T1781C	p.F594S	.	.	161	7	219	0	.	92
SHCBP1L	81626	hgsc.bcm.edu	37	1	182921997	182921997	+	Missense_Mutation	SNP	T	T	C	rs199811188		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SHCBP1L	NM_030933	exon1	c.A272G	p.E91G	.	.	36	4	32	0	.	91
SHPRH	257218	broad.mit.edu;bcgsc.ca	37	6	146264289	146264289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SHPRH	NM_173082	exon9	c.T2228C	p.L743P	.	.	129	7	161	1	.	92
SIDT1	54847	hgsc.bcm.edu	37	3	113300279	113300279	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIDT1	NM_017699	exon6	c.C735A	p.A245A	.	.	89	4	136	0	.	95
SIGLEC15	284266	hgsc.bcm.edu;bcgsc.ca	37	18	43417043	43417043	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC15	NM_213602	exon2	c.A102G	p.T34T	.	.	71	4	77	0	.	90
SIGLEC1	6614	hgsc.bcm.edu	37	20	3677238	3677238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC1	NM_023068	exon10	c.T2678C	p.V893A	.	.	89	4	155	0	.	167
SIGLEC1	6614	hgsc.bcm.edu	37	20	3678483	3678483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIGLEC1	NM_023068	exon8	c.T2084C	p.L695P	.	.	69	4	101	0	.	167
SIM1	6492	broad.mit.edu;bcgsc.ca	37	6	100838858	100838858	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIM1	NM_005068	exon11	c.A1680G	p.E560E	.	.	328	11	440	0	.	94
SIPA1L1	26037	hgsc.bcm.edu	37	14	72090842	72090842	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIPA1L1	NM_015556	exon4	c.T1707C	p.P569P	.	.	75	4	90	0	.	156
SIPA1L3	23094	hgsc.bcm.edu	37	19	38633306	38633306	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SIPA1L3	NM_015073	exon12	c.C3489T	p.T1163T	.	.	69	4	87	0	.	91
SLC11A1	6556	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	219251389	219251389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC11A1	NM_000578	exon5	c.A425G	p.E142G	.	.	24	4	43	0	.	93
SLC12A6	9990	hgsc.bcm.edu	37	15	34547554	34547554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC12A6	NM_133647	exon7	c.C785A	p.P262Q	.	.	69	4	108	0	.	517
SLC16A14	151473	bcgsc.ca	37	2	230924010	230924010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC16A14	NM_152527	exon2	c.A59G	p.K20R	.	.	168	6	284	0	.	96
SLC22A14	9389	hgsc.bcm.edu	37	3	38348793	38348793	+	Missense_Mutation	SNP	A	A	G	rs145776663	byfrequency	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC22A14	NM_004803	exon2	c.A565G	p.M189V	.	.	97	4	144	0	A|0.997;G|0.003	90
SLC24A5	283652	hgsc.bcm.edu;bcgsc.ca	37	15	48413333	48413333	+	Missense_Mutation	SNP	C	C	A	rs201294244	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC24A5	NM_205850	exon1	c.C92A	p.S31Y	.	.	55	4	60	0	C|0.999;T|0.001	90
SLC25A17	10478	hgsc.bcm.edu;bcgsc.ca	37	22	41173121	41173121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A17	NM_006358	exon7	c.T616C	p.F206L	.	.	63	5	103	0	.	90
SLC25A19	60386	hgsc.bcm.edu	37	17	73279599	73279599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A19	NM_001126122	exon4	c.T364C	p.F122L	.	.	80	4	105	0	.	91
SLC25A30	253512	bcgsc.ca	37	13	45973143	45973143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC25A30	NM_001010875	exon8	c.A685G	p.M229V	.	.	101	4	194	0	.	135
SLC26A1	10861	hgsc.bcm.edu	37	4	983570	983570	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T1157C	p.L386P	.	.	111	5	129	0	.	91
SLC26A1	10861	hgsc.bcm.edu;bcgsc.ca	37	4	983816	983816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC26A1	NM_022042	exon3	c.T911C	p.L304P	.	.	72	5	78	0	.	91
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170732421	170732421	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A2	NM_000340	exon3	c.A208C	p.I70L	.	.	482	136	698	0	.	515
SLC2A6	11182	hgsc.bcm.edu	37	9	136339170	136339170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC2A6	NM_017585	exon7	c.T968C	p.L323P	.	.	95	4	143	0	.	90
SLC30A7	148867	hgsc.bcm.edu	37	1	101379339	101379339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC30A7	NM_133496	exon6	c.G632T	p.G211V	.	.	84	4	123	0	.	90
SLC35D2	11046	hgsc.bcm.edu	37	9	99145784	99145784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC35D2	NM_007001	exon1	c.A133G	p.N45D	.	.	26	4	43	0	.	90
SLC38A10	124565	hgsc.bcm.edu	37	17	79225020	79225080	+	Frame_Shift_Del	DEL	GGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTGTTTAAA	GGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTGTTTAAA	-	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	GGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTGTTTAAA	GGGGAGCAAGGGAGATAAAACGGTAATCACAAGCCATGTGACGATGCCGCAGGTGTTTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC38A10	NM_138570	exon14	c.2278_2338del	p.760_780del	.	.	47	0	72	0	.	70
SLC39A3	29985	hgsc.bcm.edu	37	19	2733301	2733301	+	Silent	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC39A3	NM_144564	exon3	c.G393C	p.S131S	.	.	68	4	110	0	.	90
SLC4A2	6522	hgsc.bcm.edu	37	7	150761997	150761997	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC4A2	NM_003040	exon5	c.T522C	p.P174P	.	.	75	4	104	0	.	90
SLC5A12	159963	hgsc.bcm.edu	37	11	26700317	26700317	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A12	NM_178498	exon13	c.C1521T	p.Y507Y	.	.	93	4	139	0	.	92
SLC5A8	160728	hgsc.bcm.edu;bcgsc.ca	37	12	101581168	101581168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC5A8	NM_145913	exon7	c.A959G	p.D320G	.	.	97	4	109	0	.	90
SLC9A4	389015	hgsc.bcm.edu	37	2	103095346	103095346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLC9A4	NM_001011552	exon2	c.T305C	p.L102P	.	.	64	4	112	0	.	92
SLC9B1	150159	broad.mit.edu	37	4	103853439	103853439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001100874	exon7	c.T671C	p.V224A	.	.	424	6	581	0	.	.
SLCO1B1	10599	bcgsc.ca	37	12	21350093	21350093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLCO1B1	NM_006446	exon8	c.A941G	p.Q314R	.	.	150	5	194	0	.	97
SLMO2	51012	bcgsc.ca	37	20	57611574	57611574	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLMO2	NM_016045	exon5	c.T417C	p.S139S	.	.	136	5	168	0	.	45
SLU7	10569	bcgsc.ca	37	5	159835063	159835063	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SLU7	NM_006425	exon9	c.T832C	p.L278L	.	.	190	6	247	0	.	91
SMARCA5	8467	hgsc.bcm.edu	37	4	144464786	144464786	+	Silent	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMARCA5	NM_003601	exon15	c.T2028A	p.G676G	.	.	97	4	150	0	.	227
SMCHD1	23347	hgsc.bcm.edu;bcgsc.ca	37	18	2726476	2726476	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMCHD1	NM_015295	exon22	c.T2727C	p.P909P	.	.	67	4	118	0	.	46
SMEK2	57223	hgsc.bcm.edu	37	2	55844327	55844327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMEK2	NM_001122964	exon1	c.T95C	p.V32A	.	.	122	5	175	0	.	228
SMPD1	6609	hgsc.bcm.edu	37	11	6415247	6415247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMPD1	NM_000543	exon5	c.A1462G	p.T488A	.	.	113	5	158	0	.	90
SMYD5	10322	hgsc.bcm.edu;bcgsc.ca	37	2	73446019	73446019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SMYD5	NM_006062	exon2	c.C127T	p.R43W	.	.	124	5	224	0	.	226
SNF8	11267	hgsc.bcm.edu;bcgsc.ca	37	17	47022064	47022064	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNF8	NM_007241	exon1	c.C33A	p.I11I	.	.	41	4	58	0	.	90
SNTG1	54212	hgsc.bcm.edu	37	8	51617305	51617305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SNTG1	NM_018967	exon16	c.G1184A	p.R395Q	.	.	88	4	74	0	.	95
SORBS2	8470	bcgsc.ca	37	4	186605972	186605972	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SORBS2	NM_001270771	exon5	c.C39T	p.A13A	.	.	81	5	118	1	.	91
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106970970	106970970	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SORCS3	NM_014978	exon17	c.G2337T	p.K779N	.	.	145	32	205	0	.	99
SP140	11262	hgsc.bcm.edu	37	2	231103553	231103553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SP140	NM_001005176	exon4	c.G484T	p.A162S	.	.	80	4	120	0	.	90
SP4	6671	bcgsc.ca	37	7	21516796	21516796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SP4	NM_003112	exon4	c.T1778C	p.V593A	.	.	100	4	151	0	.	95
SPAG6	9576	hgsc.bcm.edu	37	10	22680689	22680689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPAG6	NM_172242	exon8	c.A1037G	p.E346G	.	.	72	4	105	0	.	153
SPATA13	221178	hgsc.bcm.edu	37	13	24797715	24797715	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPATA13	NM_001166271	exon2	c.T648A	p.D216E	.	.	35	4	49	0	.	229
SPATA13	221178	hgsc.bcm.edu	37	13	24798393	24798393	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPATA13	NM_001166271	exon2	c.A1326G	p.K442K	.	.	96	4	181	0	.	229
SPEN	23013	hgsc.bcm.edu;bcgsc.ca	37	1	16257506	16257506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPEN	NM_015001	exon11	c.A4771G	p.T1591A	.	.	68	4	88	0	.	298
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44859730	44859730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon36	c.G6646A	p.E2216K	.	.	73	4	142	0	.	95
SPG11	80208	hgsc.bcm.edu;bcgsc.ca	37	15	44903081	44903081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPG11	NM_025137	exon18	c.T3248C	p.L1083P	.	.	95	5	116	0	.	95
SPINT2	10653	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38782590	38782590	+	Missense_Mutation	SNP	G	G	A	rs200600070		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPINT2	NM_021102	exon7	c.G703A	p.V235I	.	.	150	45	254	1	.	90
SPIRE1	56907	hgsc.bcm.edu	37	18	12535544	12535544	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPIRE1	NM_020148	exon4	c.A660G	p.V220V	.	.	94	4	183	0	.	90
SPRED3	399473	broad.mit.edu	37	19	38880984	38880984	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPRED3	NM_001042522	exon1	c.C42T	p.S14S	.	.	250	7	403	0	.	651
SPRY2	10253	hgsc.bcm.edu	37	13	80911489	80911489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPRY2	NM_005842	exon2	c.T352C	p.S118P	.	.	71	4	103	0	.	659
SPTAN1	6709	hgsc.bcm.edu	37	9	131344805	131344805	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTAN1	NM_003127	exon13	c.A1620G	p.A540A	.	.	93	4	138	0	.	158
SPTB	6710	hgsc.bcm.edu	37	14	65249225	65249225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon19	c.T4049C	p.V1350A	.	.	48	4	81	0	.	100
SPTB	6710	hgsc.bcm.edu;bcgsc.ca	37	14	65241212	65241212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTB	NM_001024858	exon23	c.C4876T	p.H1626Y	.	.	81	4	129	0	.	100
SPTBN1	6711	hgsc.bcm.edu	37	2	54871648	54871648	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SPTBN1	NM_003128	exon20	c.C4194A	p.G1398G	.	.	91	4	201	0	.	140
SRPX2	27286	hgsc.bcm.edu;bcgsc.ca	37	X	99901349	99901349	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SRPX2	NM_014467	exon2	c.T30C	p.A10A	.	.	71	4	49	0	.	132
SSC5D	284297	bcgsc.ca	37	19	56009382	56009382	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001195267	exon9	c.T1523C	p.L508P	.	.	192	6	342	0	.	.
SSH3	54961	bcgsc.ca	37	11	67079085	67079085	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SSH3	NM_017857	exon14	c.A1707G	p.S569S	.	.	88	4	175	1	.	91
ST5	6764	hgsc.bcm.edu;bcgsc.ca	37	11	8717087	8717087	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST5	NM_213618	exon19	c.A3302G	p.E1101G	.	.	60	4	80	0	.	227
ST6GAL2	84620	hgsc.bcm.edu	37	2	107459506	107459506	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ST6GAL2	NM_032528	exon2	c.T928C	p.L310L	.	.	93	4	176	0	.	191
STARD13	90627	hgsc.bcm.edu	37	13	33700281	33700281	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STARD13	NM_178006	exon7	c.A2019G	p.G673G	.	.	96	5	182	0	.	94
STARD8	9754	hgsc.bcm.edu	37	X	67938076	67938076	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STARD8	NM_001142503	exon6	c.T1320C	p.A440A	.	.	118	5	143	0	.	196
STAU1	6780	hgsc.bcm.edu	37	20	47739657	47739657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STAU1	NM_017453	exon8	c.T938C	p.L313P	.	.	92	4	166	0	.	230
STIP1	10963	hgsc.bcm.edu;bcgsc.ca	37	11	63970927	63970927	+	Silent	SNP	G	G	T	rs144539134	alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STIP1	NM_006819	exon13	c.G1392T	p.A464A	.	.	67	4	94	0	G|1.000;A|0.000	93
STK3	6788	hgsc.bcm.edu	37	8	99779493	99779493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STK3	NM_001256312	exon5	c.T298C	p.S100P	.	.	84	4	85	0	.	978
STK40	83931	hgsc.bcm.edu	37	1	36814368	36814368	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STK40	NM_032017	exon8	c.G672T	p.V224V	.	.	114	5	154	0	.	83
STON1	11037	bcgsc.ca	37	2	48809689	48809689	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STON1	NM_001198595	exon3	c.A1917G	p.P639P	.	.	126	5	241	0	.	91
STX12	23673	hgsc.bcm.edu	37	1	28136791	28136791	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STX12	NM_177424	exon5	c.C461A	p.S154X	.	.	87	3	132	0	.	153
STX5	6811	bcgsc.ca	37	11	62594823	62594823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	STX5	NM_003164	exon4	c.T344C	p.L115P	.	.	215	6	296	1	.	154
SUGP2	10147	hgsc.bcm.edu	37	19	19129923	19129923	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUGP2	NM_014884	exon4	c.T1845C	p.A615A	.	.	83	4	139	0	.	91
SULT1C2	6819	hgsc.bcm.edu	37	2	108910710	108910710	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SULT1C2	NM_001056	exon3	c.G177T	p.V59V	.	.	93	5	73	0	.	91
SULT1C2	6819	hgsc.bcm.edu	37	2	108910807	108910807	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SULT1C2	NM_001056	exon3	c.T274A	p.S92T	.	.	92	4	113	0	.	91
SULT2A1	6822	bcgsc.ca	37	19	48386883	48386883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SULT2A1	NM_003167	exon2	c.A296G	p.H99R	.	.	159	6	241	1	.	92
SUN2	25777	hgsc.bcm.edu	37	22	39136284	39136284	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUN2	NM_001199579	exon12	c.C1407A	p.A469A	.	.	87	4	140	0	.	154
SUSD1	64420	bcgsc.ca	37	9	114904634	114904634	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUSD1	NM_022486	exon5	c.G672T	p.L224L	.	.	180	6	243	0	.	90
SUSD4	55061	bcgsc.ca	37	1	223536631	223536631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUSD4	NM_017982	exon2	c.A137G	p.Q46R	.	.	156	8	129	1	.	68
SUZ12	23512	bcgsc.ca	37	17	30302622	30302622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SUZ12	NM_015355	exon7	c.A713G	p.E238G	.	.	218	6	395	1	.	658
SV2B	9899	hgsc.bcm.edu	37	15	91809826	91809826	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SV2B	NM_014848	exon8	c.A1023G	p.K341K	.	.	78	4	75	0	.	97
SVEP1	79987	hgsc.bcm.edu;bcgsc.ca	37	9	113169313	113169313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SVEP1	NM_153366	exon38	c.A8567G	p.E2856G	.	.	78	4	106	0	.	75
SWAP70	23075	hgsc.bcm.edu	37	11	9715709	9715709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SWAP70	NM_015055	exon2	c.T116C	p.L39P	.	.	108	5	144	0	.	228
SYN1	6853	hgsc.bcm.edu	37	X	47434132	47434132	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYN1	NM_006950	exon11	c.C1348T	p.Q450X	.	.	63	3	71	0	.	131
SYNE1	23345	hgsc.bcm.edu	37	6	152660387	152660387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNE1	NM_182961	exon75	c.A12340G	p.T4114A	.	.	83	4	136	0	.	607
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152605298	152605298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNE1	NM_182961	exon96	c.G18022T	p.D6008Y	.	.	38	4	75	0	.	607
SYNGR1	9145	hgsc.bcm.edu	37	22	39760240	39760240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNGR1	NM_145738	exon1	c.C41T	p.S14L	.	.	97	4	183	0	.	90
SYNGR1	9145	hgsc.bcm.edu	37	22	39772194	39772194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNGR1	NM_145738	exon3	c.T478C	p.F160L	.	.	115	5	199	0	.	90
SYNJ1	8867	hgsc.bcm.edu	37	21	34056410	34056410	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNJ1	NM_203446	exon10	c.C1255T	p.R419X	.	.	95	4	158	0	.	232
SYNPO	11346	hgsc.bcm.edu	37	5	150029768	150029768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	SYNPO	NM_001166209	exon3	c.A2663G	p.D888G	.	.	142	6	140	0	.	153
T	6862	hgsc.bcm.edu;bcgsc.ca	37	6	166579280	166579280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	T	NM_003181	exon4	c.A520G	p.R174G	.	.	99	6	157	0	.	516
TAF10	6881	bcgsc.ca	37	11	6632679	6632679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TAF10	NM_006284	exon3	c.C392T	p.P131L	.	.	153	5	247	0	.	90
TAF1C	9013	hgsc.bcm.edu	37	16	84214784	84214784	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TAF1C	NM_005679	exon11	c.G1251A	p.P417P	.	.	99	4	190	0	.	91
TANC1	85461	ucsc.edu	37	2	160053254	160053254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TANC1	NM_033394	exon18	c.C3115T	p.H1039Y	.	.	50	4	48	0	.	92
TAS2R7	50837	bcgsc.ca	37	12	10955139	10955139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TAS2R7	NM_023919	exon1	c.T31C	p.F11L	.	.	234	6	292	0	.	91
TBC1D10A	83874	hgsc.bcm.edu	37	22	30688656	30688656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D10A	NM_001204240	exon9	c.T1256C	p.L419P	.	.	76	4	94	0	.	91
TBC1D2B	23102	hgsc.bcm.edu;bcgsc.ca	37	15	78308988	78308988	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon8	c.G1675A	p.G559R	.	.	75	4	105	0	.	136
TBC1D2B	23102	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	78301403	78301403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D2B	NM_144572	exon10	c.T2324C	p.L775P	.	.	36	4	95	0	.	136
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179298474	179298474	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBC1D9B	NM_198868	exon15	c.C2472T	p.Y824Y	.	.	112	18	159	0	.	154
TBCC	6903	hgsc.bcm.edu	37	6	42713354	42713354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBCC	NM_003192	exon1	c.A458G	p.D153G	.	.	94	4	91	0	.	90
TBCCD1	55171	hgsc.bcm.edu	37	3	186272247	186272247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBCCD1	NM_001134415	exon6	c.T1340C	p.V447A	.	.	98	4	159	0	.	108
TBR1	10716	hgsc.bcm.edu	37	2	162275531	162275531	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBR1	NM_006593	exon4	c.C1098T	p.F366F	.	.	89	5	122	0	.	91
TBX10	347853	hgsc.bcm.edu;bcgsc.ca	37	11	67406938	67406938	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TBX10	NM_005995	exon1	c.A6G	p.A2A	.	.	66	4	99	0	.	90
TCEANC2	127428	hgsc.bcm.edu	37	1	54520126	54520126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCEANC2	NM_153035	exon2	c.A31G	p.I11V	.	.	112	5	138	0	.	91
TCF7L1	83439	hgsc.bcm.edu	37	2	85533589	85533589	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCF7L1	NM_031283	exon10	c.T1164C	p.S388S	.	.	95	4	124	0	.	585
TCF7L2	6934	hgsc.bcm.edu	37	10	114849213	114849213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TCF7L2	NM_001146283	exon5	c.T538C	p.S180P	.	.	68	4	96	0	.	586
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	46657993	46657993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TDRD6	NM_001168359	exon1	c.G2128A	p.A710T	.	.	197	60	272	0	.	138
TEAD4	7004	hgsc.bcm.edu	37	12	3121364	3121364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TEAD4	NM_003213	exon5	c.G320T	p.R107L	.	.	82	4	101	0	.	90
TENC1	23371	hgsc.bcm.edu	37	12	53455989	53455989	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TENC1	NM_015319	exon23	c.A3657G	p.K1219K	.	.	66	5	103	0	.	92
TENM2	57451	hgsc.bcm.edu	37	5	167489113	167489113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001122679	exon7	c.T1358C	p.V453A	.	.	89	4	91	0	.	.
TENM3	55714	hgsc.bcm.edu	37	4	183651371	183651371	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001080477	exon14	c.A2604G	p.R868R	.	.	142	6	209	0	.	.
TET2	54790	hgsc.bcm.edu	37	4	106157772	106157772	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TET2,NS,haematopoietic_neoplasm,+2	TET2	NM_001127208	exon3	c.A2673G	p.Q891Q	.	.	72	3	78	1	.	4618
TET3	200424	hgsc.bcm.edu	37	2	74274104	74274104	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_144993	exon1	c.T655C	p.L219L	.	.	112	5	157	0	.	.
TFAP2A	7020	hgsc.bcm.edu	37	6	10410201	10410201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TFAP2A	NM_003220	exon2	c.A413G	p.H138R	.	.	89	4	153	0	.	91
TFE3	7030	hgsc.bcm.edu	37	X	48896668	48896668	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TFE3	NM_006521	exon3	c.T498C	p.R166R	.	.	147	6	181	0	.	658
TG	7038	hgsc.bcm.edu	37	8	134125745	134125745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TG	NM_003235	exon44	c.A7652G	p.D2551G	.	.	100	4	87	0	.	145
TGM5	9333	hgsc.bcm.edu	37	15	43548802	43548802	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TGM5	NM_201631	exon4	c.G519A	p.K173K	.	.	119	6	163	0	.	90
THEMIS	387357	bcgsc.ca	37	6	128150820	128150820	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	THEMIS	NM_001010923	exon3	c.A510G	p.E170E	.	.	137	5	192	0	.	94
THOC2	57187	hgsc.bcm.edu	37	X	122760485	122760485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	THOC2	NM_001081550	exon24	c.A2786G	p.E929G	.	.	98	3	90	0	.	133
TIAM1	7074	hgsc.bcm.edu	37	21	32639207	32639207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TIAM1	NM_003253	exon5	c.C82A	p.R28S	.	.	70	4	91	0	.	724
TKT	7086	hgsc.bcm.edu	37	3	53263137	53263137	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TKT	NM_001258028	exon11	c.C1305T	p.S435S	.	.	86	4	111	0	.	92
TLE2	7089	hgsc.bcm.edu	37	19	3006425	3006425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001144761	exon16	c.A1535G	p.D512G	.	.	110	5	113	0	.	.
TLK1	9874	bcgsc.ca	37	2	171974278	171974278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TLK1	NM_012290	exon2	c.A229G	p.S77G	.	.	84	5	106	2	.	439
TLR7	51284	bcgsc.ca	37	X	12903796	12903796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TLR7	NM_016562	exon3	c.A169G	p.T57A	.	.	187	6	168	0	.	564
TM7SF2	7108	hgsc.bcm.edu	37	11	64880311	64880311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TM7SF2	NM_003273	exon3	c.A278G	p.K93R	.	.	75	4	105	0	.	91
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2593953	2593953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMC2	NM_080751	exon14	c.C1857G	p.D619E	.	.	313	68	513	0	.	93
TMEM104	54868	hgsc.bcm.edu;ucsc.edu	37	17	72784959	72784959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM104	NM_017728	exon4	c.A199G	p.M67V	.	.	42	4	48	0	.	90
TMEM106A	113277	hgsc.bcm.edu	37	17	41365155	41365155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_145041	exon3	c.A95G	p.N32S	.	.	86	4	109	0	.	.
TMEM132B	114795	hgsc.bcm.edu	37	12	126136985	126136985	+	Splice_Site	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM132B	NM_052907	exon8	c.1900-2A>G	.	.	.	70	4	97	0	.	185
TMEM161B	153396	broad.mit.edu	37	5	87493493	87493493	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM161B	NM_153354	exon11	c.A1179G	p.K393K	.	.	637	9	841	2	.	92
TMEM200A	114801	hgsc.bcm.edu	37	6	130762627	130762627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM200A	NM_001258277	exon3	c.T1060C	p.S354P	.	.	148	6	191	0	.	23
TMEM201	199953	hgsc.bcm.edu;bcgsc.ca	37	1	9669927	9669927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM201	NM_001130924	exon8	c.C1423T	p.P475S	.	.	80	4	133	0	.	68
TMEM79	84283	hgsc.bcm.edu	37	1	156255196	156255196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMEM79	NM_032323	exon2	c.A179G	p.E60G	.	.	87	5	95	0	.	90
TMPRSS15	5651	bcgsc.ca	37	21	19744616	19744616	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMPRSS15	NM_002772	exon6	c.T558C	p.P186P	.	.	175	6	271	0	.	160
TMPRSS9	360200	hgsc.bcm.edu;bcgsc.ca	37	19	2396594	2396594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMPRSS9	NM_182973	exon2	c.G200T	p.R67L	.	.	89	5	131	0	.	91
TMTC3	160418	hgsc.bcm.edu	37	12	88566387	88566387	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMTC3	NM_181783	exon8	c.T1064A	p.M355K	.	.	75	4	132	0	.	91
TMX3	54495	bcgsc.ca	37	18	66344259	66344259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TMX3	NM_019022	exon16	c.A1276G	p.S426G	.	.	77	4	151	1	.	91
TNFRSF8	943	hgsc.bcm.edu	37	1	12202458	12202458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNFRSF8	NM_001243	exon15	c.A1658G	p.E553G	.	.	157	6	268	0	.	654
TNIP2	79155	hgsc.bcm.edu	37	4	2749527	2749527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNIP2	NM_024309	exon2	c.A422G	p.D141G	.	.	87	4	111	0	.	90
TNKS2	80351	bcgsc.ca	37	10	93576910	93576910	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNKS2	NM_025235	exon3	c.T444C	p.A148A	.	.	175	6	244	0	.	541
TNPO1	3842	bcgsc.ca	37	5	72182905	72182905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNPO1	NM_002270	exon12	c.T1159C	p.S387P	.	.	132	5	183	0	.	228
TNS1	7145	hgsc.bcm.edu	37	2	218712293	218712293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TNS1	NM_022648	exon17	c.T2572C	p.S858P	.	.	107	5	135	0	.	156
TOB1	10140	hgsc.bcm.edu	37	17	48941375	48941375	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOB1	NM_005749	exon2	c.C4T	p.Q2X	.	.	45	4	69	0	.	226
TOP2B	7155	hgsc.bcm.edu	37	3	25671863	25671863	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOP2B	NM_001068	exon12	c.A1488G	p.R496R	.	.	121	5	226	0	.	273
TOPORS	10210	hgsc.bcm.edu	37	9	32541494	32541494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TOPORS	NM_005802	exon3	c.A3029G	p.N1010S	.	.	120	5	173	0	.	230
TP53	7157	hgsc.bcm.edu	37	17	7577602	7577602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	TP53,NS,carcinoma,+1	TP53	NM_000546	exon7	c.T679C	p.S227P	.	.	149	6	208	2	.	70225
TPGS1	91978	hgsc.bcm.edu	37	19	507710	507710	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_033513	exon1	c.T204C	p.A68A	.	.	111	6	136	0	.	.
TPK1	27010	hgsc.bcm.edu	37	7	144288520	144288520	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TPK1	NM_022445	exon7	c.A497T	p.Q166L	.	.	83	4	134	0	.	188
TPO	7173	hgsc.bcm.edu	37	2	1440149	1440149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TPO	NM_175719	exon5	c.A475G	p.N159D	.	.	94	4	195	0	.	332
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	36875346	36875346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRANK1	NM_014831	exon21	c.T5596C	p.F1866L	.	.	110	5	189	0	.	24
TRAPPC8	22878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29488317	29488317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRAPPC8	NM_014939	exon8	c.G1187T	p.S396I	.	.	229	47	318	1	.	159
TREML2	79865	bcgsc.ca	37	6	41162217	41162217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TREML2	NM_024807	exon3	c.T731C	p.L244P	.	.	195	6	354	3	.	91
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180662368	180662368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM41	NM_201627	exon8	c.A1546G	p.S516G	.	.	254	55	264	0	.	226
TRIM42	287015	bcgsc.ca	37	3	140406637	140406637	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM42	NM_152616	exon3	c.A1113G	p.A371A	.	.	126	5	180	1	.	227
TRIM51	84767	bcgsc.ca	37	11	55655650	55655650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_032681	exon4	c.C650A	p.A217D	.	.	567	14	770	3	.	.
TRIM51	84767	broad.mit.edu	37	11	55655651	55655651	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_032681	exon4	c.C651T	p.A217A	.	.	566	13	761	1	.	.
TRIM59	286827	hgsc.bcm.edu	37	3	160156325	160156325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIM59	NM_173084	exon3	c.A647G	p.Q216R	.	.	122	5	212	0	.	658
TRIO	7204	bcgsc.ca	37	5	14387618	14387618	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIO	NM_007118	exon22	c.G3642T	p.A1214A	.	.	236	8	226	2	.	562
TRIP12	9320	hgsc.bcm.edu	37	2	230683119	230683119	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRIP12	NM_004238	exon8	c.A1416G	p.T472T	.	.	171	7	285	0	.	572
TRPM3	80036	hgsc.bcm.edu	37	9	73399114	73399114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRPM3	NM_001007471	exon7	c.G1055A	p.R352Q	.	.	125	5	158	0	.	521
TRRAP	8295	bcgsc.ca	37	7	98527822	98527822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TRRAP	NM_001244580	exon24	c.A3386G	p.K1129R	.	.	217	6	341	1	.	923
TSPAN11	441631	hgsc.bcm.edu	37	12	31132605	31132605	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN11	NM_001080509	exon5	c.T456C	p.D152D	.	.	97	4	129	0	.	68
TSPAN18	90139	hgsc.bcm.edu	37	11	44940765	44940765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN18	NM_130783	exon6	c.C334T	p.L112F	.	.	92	4	122	0	.	68
TSPAN32	10077	hgsc.bcm.edu;bcgsc.ca	37	11	2337500	2337500	+	Silent	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPAN32	NM_139022	exon7	c.G585A	p.Q195Q	.	.	120	6	203	0	.	23
TSPYL2	64061	hgsc.bcm.edu	37	X	53114011	53114011	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TSPYL2	NM_022117	exon3	c.C960T	p.N320N	.	.	91	4	128	0	.	130
TTC31	64427	hgsc.bcm.edu	37	2	74719856	74719856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTC31	NM_022492	exon12	c.C1245A	p.C415X	.	.	63	4	158	0	.	90
TTI2	80185	hgsc.bcm.edu;bcgsc.ca	37	8	33357923	33357923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001265581	exon7	c.T1345C	p.S449P	.	.	53	5	93	0	.	.
TTLL1	25809	bcgsc.ca	37	22	43435818	43435818	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTLL1	NM_012263	exon11	c.A1236G	p.R412R	.	.	74	5	103	0	.	92
TTLL13	440307	hgsc.bcm.edu	37	15	90793872	90793872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTLL13	NM_001029964	exon2	c.A10G	p.S4G	.	.	97	4	170	0	.	44
TTLL5	23093	hgsc.bcm.edu	37	14	76156612	76156612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTLL5	NM_015072	exon6	c.T449C	p.F150S	.	.	124	4	157	0	.	92
TTN	7273	bcgsc.ca	37	2	179610651	179610651	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_133379	exon46	c.A16476G	p.E5492E	.	.	154	5	213	0	.	636
TTN	7273	hgsc.bcm.edu	37	2	179605820	179605820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon48	c.A12140G	p.E4047G	.	.	59	4	81	0	.	636
TTN	7273	hgsc.bcm.edu;bcgsc.ca	37	2	179393915	179393915	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon360	c.T106563C	p.S35521S	.	.	63	4	99	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179396537	179396537	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon358	c.T104805C	p.P34935P	.	.	144	43	242	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179458397	179458397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TTN	NM_001267550	exon298	c.C58630A	p.L19544I	.	.	201	56	269	0	.	636
TUBGCP4	27229	hgsc.bcm.edu	37	15	43689513	43689513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TUBGCP4	NM_014444	exon12	c.C1273T	p.H425Y	.	.	70	4	134	0	.	93
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139564133	139564133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXLNB	NM_153235	exon10	c.A1585T	p.S529C	.	.	174	47	267	0	.	91
TXNL4A	10907	hgsc.bcm.edu;bcgsc.ca	37	18	77748286	77748286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TXNL4A	NM_006701	exon1	c.C107A	p.P36H	.	.	67	5	122	0	.	90
TYMP	1890	hgsc.bcm.edu	37	22	50966131	50966131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TYMP	NM_001257989	exon5	c.G532T	p.D178Y	.	.	96	4	119	0	.	23
TYMP	1890	hgsc.bcm.edu	37	22	50968110	50968110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	TYMP	NM_001257989	exon2	c.G29T	p.G10V	.	.	99	4	174	0	.	23
UBR3	130507	hgsc.bcm.edu	37	2	170806434	170806434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon23	c.T3404C	p.V1135A	.	.	87	4	156	0	.	68
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	2	170897404	170897404	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UBR3	NM_172070	exon32	c.A4569G	p.E1523E	.	.	93	4	151	0	.	68
UEVLD	55293	hgsc.bcm.edu	37	11	18557968	18557968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UEVLD	NM_018314	exon10	c.T1109C	p.V370A	.	.	85	4	145	0	.	226
UGGT2	55757	hgsc.bcm.edu	37	13	96530059	96530059	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGGT2	NM_020121	exon28	c.G3280T	p.G1094X	.	.	62	4	82	0	.	92
UGT2A1	10941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	70504997	70504997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UGT2A1	NM_001252274	exon3	c.G965A	p.G322E	.	.	120	7	212	0	.	92
UHRF1BP1L	23074	bcgsc.ca	37	12	100433435	100433435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UHRF1BP1L	NM_015054	exon20	c.T4214C	p.V1405A	.	.	105	6	157	1	.	24
UROC1	131669	hgsc.bcm.edu;bcgsc.ca	37	3	126220121	126220121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UROC1	NM_001165974	exon11	c.A1085G	p.E362G	.	.	50	4	83	0	.	91
USP11	8237	hgsc.bcm.edu	37	X	47098823	47098823	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP11	NM_004651	exon3	c.G489A	p.W163X	.	.	90	4	61	0	.	659
USP14	9097	bcgsc.ca	37	18	211246	211246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP14	NM_005151	exon16	c.C1447T	p.R483C	.	.	170	6	283	0	.	659
USP21	27005	hgsc.bcm.edu	37	1	161134677	161134677	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP21	NM_012475	exon11	c.T1437C	p.G479G	.	.	199	9	205	0	.	660
USP22	23326	hgsc.bcm.edu	37	17	20914512	20914512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP22	NM_015276	exon8	c.G1055T	p.G352V	.	.	92	4	95	0	.	636
USP34	9736	hgsc.bcm.edu	37	2	61505341	61505341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP34	NM_014709	exon41	c.G5392A	p.V1798I	.	.	85	4	131	0	.	579
USP36	57602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76799931	76799931	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP36	NM_025090	exon16	c.G2346T	p.T782T	.	.	68	19	107	0	.	659
USP3	9960	hgsc.bcm.edu	37	15	63850378	63850378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP3	NM_006537	exon6	c.A524G	p.Q175R	.	.	56	4	119	0	.	658
USP44	84101	hgsc.bcm.edu;bcgsc.ca	37	12	95922582	95922582	+	Splice_Site	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USP44	NM_032147	exon4	c.1624+1G>A	.	.	.	100	5	176	0	.	658
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31232538	31232538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	USPL1	NM_005800	exon9	c.T2324C	p.V775A	.	.	83	5	123	0	.	524
UTP20	27340	hgsc.bcm.edu	37	12	101683948	101683948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTP20	NM_014503	exon7	c.T631C	p.F211L	.	.	120	5	230	0	.	155
UTP20	27340	hgsc.bcm.edu	37	12	101685546	101685546	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTP20	NM_014503	exon9	c.A918G	p.K306K	.	.	96	4	127	0	.	155
UTRN	7402	bcgsc.ca	37	6	145103112	145103112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTRN	NM_007124	exon60	c.A8687G	p.N2896S	.	.	159	5	242	0	.	95
UTRN	7402	hgsc.bcm.edu	37	6	144801076	144801076	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	UTRN	NM_007124	exon25	c.C3465T	p.Y1155Y	.	.	97	4	129	0	.	95
VASP	7408	hgsc.bcm.edu	37	19	46021235	46021235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VASP	NM_003370	exon3	c.A226G	p.T76A	.	.	191	10	260	0	.	514
VAV1	7409	hgsc.bcm.edu	37	19	6828673	6828673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VAV1	NM_005428	exon12	c.A1133G	p.E378G	.	.	98	4	143	0	.	1276
VCAN	1462	hgsc.bcm.edu;bcgsc.ca	37	5	82833999	82833999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VCAN	NM_004385	exon8	c.A5177G	p.K1726R	.	.	71	4	48	0	.	238
VHL	7428	hgsc.bcm.edu	37	3	10191490	10191490	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	VHL,NS,carcinoma,+2	VHL	NM_000551	exon3	c.A483G	p.R161R	.	.	40	2	66	0	.	6694
VILL	50853	hgsc.bcm.edu	37	3	38038608	38038608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VILL	NM_015873	exon5	c.T491C	p.F164S	.	.	94	4	148	0	.	90
VPRBP	9730	hgsc.bcm.edu;bcgsc.ca	37	3	51456190	51456190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPRBP	NM_014703	exon15	c.A3218G	p.Q1073R	.	.	74	4	125	0	.	92
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	62352482	62352482	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS13C	NM_020821	exon1	c.T92G	p.I31S	.	.	50	15	84	0	.	92
VPS18	57617	hgsc.bcm.edu	37	15	41191112	41191112	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VPS18	NM_020857	exon3	c.T241C	p.L81L	.	.	75	4	100	0	.	155
VSX2	338917	hgsc.bcm.edu	37	14	74706312	74706312	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VSX2	NM_182894	exon1	c.A48G	p.T16T	.	.	96	4	143	0	.	69
VWA5B2	90113	bcgsc.ca	37	3	183955046	183955046	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_138345	exon11	c.T1566C	p.P522P	.	.	133	5	179	0	.	.
VWCE	220001	hgsc.bcm.edu	37	11	61042033	61042033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	VWCE	NM_152718	exon12	c.T1519C	p.W507R	.	.	69	4	96	0	.	91
WBSCR22	114049	hgsc.bcm.edu	37	7	73108372	73108372	+	Silent	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WBSCR22	NM_001202560	exon10	c.C693A	p.T231T	.	.	52	4	88	0	.	90
WDR16	146845	hgsc.bcm.edu	37	17	9490134	9490134	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR16	NM_145054	exon3	c.A390G	p.G130G	.	.	80	4	175	0	.	71
WDR62	284403	bcgsc.ca	37	19	36550902	36550902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR62	NM_173636	exon3	c.A302G	p.N101S	.	.	114	5	158	1	.	90
WDR72	256764	hgsc.bcm.edu;bcgsc.ca	37	15	54003136	54003136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR72	NM_182758	exon9	c.G872A	p.S291N	.	.	52	4	47	0	.	92
WDR82	80335	hgsc.bcm.edu;bcgsc.ca	37	3	52293863	52293863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR82	NM_025222	exon6	c.A569G	p.Q190R	.	.	35	5	47	0	.	226
WDR88	126248	hgsc.bcm.edu	37	19	33623281	33623281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WDR88	NM_173479	exon1	c.C206T	p.P69L	.	.	82	4	105	0	.	154
WNK2	65268	hgsc.bcm.edu	37	9	96024258	96024258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WNK2	NM_006648	exon12	c.T3229C	p.S1077P	.	.	71	4	123	0	.	765
WSB1	26118	bcgsc.ca	37	17	25636178	25636178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WSB1	NM_015626	exon6	c.A764G	p.H255R	.	.	155	5	222	0	.	226
WWC1	23286	hgsc.bcm.edu	37	5	167835651	167835651	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WWC1	NM_015238	exon7	c.C860A	p.S287X	.	.	66	4	66	0	.	157
WWTR1	25937	hgsc.bcm.edu	37	3	149375035	149375035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	WWTR1	NM_001168278	exon3	c.T59C	p.V20A	.	.	88	4	133	0	.	94
XAB2	56949	hgsc.bcm.edu	37	19	7685180	7685180	+	Silent	SNP	C	C	T	rs202217433		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XAB2	NM_020196	exon16	c.G2247A	p.S749S	.	.	92	4	154	0	C|0.999;T|0.000	272
XIRP2	129446	broad.mit.edu	37	2	168100203	168100203	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XIRP2	NM_152381	exon9	c.A2301G	p.V767V	.	.	253	6	346	1	.	104
XPO4	64328	hgsc.bcm.edu	37	13	21442736	21442736	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XPO4	NM_022459	exon2	c.G174A	p.L58L	.	.	100	4	146	0	.	272
XRCC1	7515	hgsc.bcm.edu	37	19	44048332	44048332	+	Missense_Mutation	SNP	C	C	A	rs2307167	byfrequency;alternate_allele	TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XRCC1	NM_006297	exon15	c.G1676T	p.R559L	.	.	92	4	104	0	C|0.999;T|0.001	912
XRCC5	7520	bcgsc.ca	37	2	217001890	217001890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	XRCC5	NM_021141	exon11	c.A1193G	p.D398G	.	.	242	7	340	2	.	970
YAP1	10413	hgsc.bcm.edu	37	11	101984899	101984899	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	YAP1	NM_001130145	exon2	c.G346T	p.G116X	.	.	64	4	132	0	.	659
YLPM1	56252	broad.mit.edu	37	14	75287795	75287795	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	YLPM1	NM_019589	exon17	c.A6066G	p.E2022E	.	.	473	8	697	1	.	71
YTHDF1	54915	hgsc.bcm.edu	37	20	61835053	61835053	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	YTHDF1	NM_017798	exon4	c.A239G	p.D80G	.	.	115	5	170	0	.	92
ZAN	7455	bcgsc.ca	37	7	100373430	100373430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZAN	.	.	.	.	.	.	110	5	199	1	.	142
ZBTB11	27107	broad.mit.edu	37	3	101384360	101384360	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZBTB11	NM_014415	exon4	c.A1071G	p.E357E	.	.	303	7	490	1	.	91
ZBTB8B	728116	hgsc.bcm.edu;bcgsc.ca	37	1	32950817	32950817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001145720	exon4	c.A1286G	p.D429G	.	.	78	5	104	0	.	.
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	306	6	292	2	.	515
ZC3H12A	80149	hgsc.bcm.edu	37	1	37945926	37945926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZC3H12A	NM_025079	exon3	c.T479C	p.I160T	.	.	119	5	202	0	.	92
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138749685	138749685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZC3HAV1	NM_024625	exon8	c.T1933C	p.C645R	.	.	93	4	154	0	.	91
ZDBF2	57683	hgsc.bcm.edu	37	2	207175357	207175357	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDBF2	NM_020923	exon5	c.G6105A	p.W2035X	.	.	73	5	119	0	.	3
ZDHHC3	51304	hgsc.bcm.edu	37	3	44975411	44975411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDHHC3	NM_016598	exon4	c.A497G	p.E166G	.	.	99	4	147	0	.	90
ZDHHC9	51114	hgsc.bcm.edu	37	X	128947657	128947657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZDHHC9	NM_001008222	exon6	c.G670A	p.G224R	.	.	72	4	62	0	.	131
ZER1	10444	hgsc.bcm.edu	37	9	131502396	131502396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZER1	NM_006336	exon13	c.A1856G	p.N619S	.	.	100	4	186	0	.	91
ZFAT	57623	hgsc.bcm.edu;bcgsc.ca	37	8	135545138	135545138	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZFAT	NM_020863	exon12	c.T3054C	p.P1018P	.	.	59	4	80	0	.	90
ZFP14	57677	hgsc.bcm.edu	37	19	36853129	36853129	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZFP14	NM_020917	exon3	c.A21G	p.T7T	.	.	66	4	123	0	.	91
ZGLP1	100125288	bcgsc.ca	37	19	10419281	10419281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZGLP1	NM_001103167	exon1	c.C77A	p.P26Q	.	.	63	4	69	0	.	23
ZIK1	284307	hgsc.bcm.edu	37	19	58102154	58102154	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZIK1	NM_001010879	exon4	c.T975C	p.C325C	.	.	76	4	115	0	.	91
ZMYM4	9202	hgsc.bcm.edu;bcgsc.ca	37	1	35846860	35846860	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZMYM4	NM_005095	exon8	c.A1182G	p.K394K	.	.	82	4	89	0	.	291
ZNF165	7718	bcgsc.ca	37	6	28056859	28056859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF165	NM_003447	exon4	c.T1069C	p.S357P	.	.	163	5	212	1	.	90
ZNF165	7718	hgsc.bcm.edu;bcgsc.ca	37	6	28057118	28057118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF165	NM_003447	exon4	c.T1328A	p.L443H	.	.	89	4	139	0	.	90
ZNF177	7730	hgsc.bcm.edu;bcgsc.ca	37	19	9491942	9491942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF177	NM_001172651	exon6	c.A935G	p.Y312C	.	.	91	4	165	0	.	91
ZNF189	7743	hgsc.bcm.edu	37	9	104170939	104170939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF189	NM_003452	exon3	c.T889C	p.F297L	.	.	95	4	159	0	.	229
ZNF189	7743	hgsc.bcm.edu	37	9	104171114	104171114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF189	NM_003452	exon3	c.G1064T	p.R355L	.	.	103	4	141	0	.	229
ZNF195	7748	hgsc.bcm.edu	37	11	3392927	3392927	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF195	NM_001256824	exon3	c.T22C	p.L8L	.	.	79	4	115	0	.	90
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	22157552	22157552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF208	NM_007153	exon4	c.T284C	p.F95S	.	.	123	6	198	0	.	7
ZNF227	7770	hgsc.bcm.edu	37	19	44740046	44740046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.G1463T	p.G488V	.	.	83	4	134	0	.	91
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44739253	44739253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF227	NM_182490	exon6	c.A670C	p.K224Q	.	.	81	24	122	0	.	91
ZNF260	339324	bcgsc.ca	37	19	37005423	37005423	+	Missense_Mutation	SNP	T	T	C	rs199971748		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF260	NM_001166038	exon3	c.A718G	p.R240G	.	.	241	7	363	1	.	90
ZNF267	10308	hgsc.bcm.edu	37	16	31926790	31926790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF267	NM_003414	exon4	c.C1220A	p.P407Q	.	.	49	4	100	0	.	138
ZNF271	10778	bcgsc.ca	37	18	32888394	32888394	+	RNA	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF271	.	.	.	.	.	.	79	8	108	3	.	90
ZNF271	10778	bcgsc.ca	37	18	32888401	32888401	+	RNA	SNP	A	A	G	rs74831732		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF271	.	.	.	.	.	.	89	13	137	48	A|0.250;G|0.750	90
ZNF292	23036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87955340	87955340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF292	NM_015021	exon7	c.T998C	p.L333P	.	.	200	46	276	2	.	72
ZNF365	22891	hgsc.bcm.edu;bcgsc.ca	37	10	64415380	64415380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF365	NM_199452	exon4	c.T380C	p.V127A	.	.	34	4	42	0	.	92
ZNF418	147686	hgsc.bcm.edu	37	19	58438293	58438293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.G1256A	p.G419D	.	.	97	4	152	0	.	90
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	58438372	58438372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF418	NM_133460	exon4	c.A1177G	p.T393A	.	.	103	8	155	0	.	90
ZNF420	147923	hgsc.bcm.edu	37	19	37619072	37619072	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF420	NM_144689	exon5	c.T1179A	p.C393X	.	.	98	4	146	0	.	90
ZNF423	23090	hgsc.bcm.edu	37	16	49671524	49671524	+	Silent	SNP	A	A	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF423	NM_015069	exon4	c.T1539A	p.G513G	.	.	54	4	80	0	.	228
ZNF436	80818	hgsc.bcm.edu	37	1	23689249	23689249	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF436	NM_001077195	exon4	c.T626C	p.L209P	.	.	168	8	241	0	.	153
ZNF469	84627	hgsc.bcm.edu	37	16	88503720	88503720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001127464	exon2	c.A9758G	p.N3253S	.	.	115	5	119	0	.	.
ZNF497	162968	mdanderson.org	37	19	58868792	58868792	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF497	NM_001207009	exon2	c.C210A	p.P70P	.	.	11	2	10	0	.	90
ZNF500	26048	hgsc.bcm.edu	37	16	4802991	4802991	+	Silent	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF500	NM_021646	exon6	c.C829A	p.R277R	.	.	40	4	57	0	.	93
ZNF525	170958	bcgsc.ca	37	19	53884237	53884237	+	RNA	SNP	T	T	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	.	.	.	.	.	.	138	5	203	0	.	.
ZNF544	27300	hgsc.bcm.edu	37	19	58773098	58773098	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF544	NM_014480	exon7	c.G1126T	p.G376X	.	.	48	4	69	0	.	91
ZNF558	148156	hgsc.bcm.edu;bcgsc.ca	37	19	8922642	8922642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF558	NM_144693	exon6	c.C524G	p.T175S	.	.	79	4	134	0	.	90
ZNF567	163081	hgsc.bcm.edu	37	19	37210227	37210227	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF567	NM_152603	exon4	c.C508T	p.Q170X	.	.	78	4	136	0	.	90
ZNF569	148266	hgsc.bcm.edu	37	19	37905051	37905051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF569	NM_152484	exon6	c.C509A	p.P170H	.	.	82	4	130	0	.	154
ZNF582	147948	hgsc.bcm.edu	37	19	56895790	56895790	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF582	NM_144690	exon5	c.T996C	p.V332V	.	.	84	3	126	0	.	138
ZNF606	80095	hgsc.bcm.edu	37	19	58491239	58491239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF606	NM_025027	exon7	c.T809C	p.V270A	.	.	57	4	104	0	.	92
ZNF611	81856	hgsc.bcm.edu;bcgsc.ca	37	19	53208496	53208496	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF611	NM_030972	exon7	c.T1812C	p.S604S	.	.	88	4	145	0	.	91
ZNF664	144348	hgsc.bcm.edu;bcgsc.ca	37	12	124497322	124497322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF664	NM_152437	exon5	c.A631G	p.S211G	.	.	60	4	95	0	.	90
ZNF665	79788	hgsc.bcm.edu;bcgsc.ca	37	19	53667902	53667902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF665	NM_024733	exon4	c.C1841T	p.A614V	.	.	98	6	139	0	.	70
ZNF667	63934	hgsc.bcm.edu	37	19	56953574	56953574	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF667	NM_022103	exon5	c.C790T	p.Q264X	.	.	104	4	180	0	.	91
ZNF676	163223	bcgsc.ca	37	19	22363870	22363870	+	Missense_Mutation	SNP	C	C	T	rs201994000		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF676	NM_001001411	exon3	c.G649A	p.V217I	.	.	41	9	73	0	.	90
ZNF688	146542	hgsc.bcm.edu;bcgsc.ca	37	16	30582420	30582420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF688	NM_145271	exon2	c.T221C	p.L74P	.	.	64	4	94	0	.	68
ZNF707	286075	hgsc.bcm.edu;bcgsc.ca	37	8	144773301	144773301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF707	NM_001100598	exon4	c.T74C	p.L25P	.	.	143	7	160	0	.	67
ZNF724P	440519	ucsc.edu;bcgsc.ca	37	19	23405943	23405943	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF724P	.	.	.	.	.	.	27	4	39	0	.	23
ZNF740	283337	hgsc.bcm.edu	37	12	53579803	53579803	+	Silent	SNP	C	C	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001004304	exon5	c.C315T	p.H105H	.	.	109	5	173	0	.	.
ZNF77	58492	hgsc.bcm.edu;bcgsc.ca	37	19	2933802	2933802	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF77	NM_021217	exon4	c.T1323C	p.C441C	.	.	65	4	117	0	.	91
ZNF790	388536	bcgsc.ca	37	19	37310694	37310694	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF790	NM_206894	exon5	c.T552C	p.D184D	.	.	242	6	388	2	.	92
ZNF790	388536	hgsc.bcm.edu;bcgsc.ca	37	19	37309733	37309733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF790	NM_206894	exon5	c.C1513A	p.P505T	.	.	71	4	125	0	.	92
ZNF79	7633	hgsc.bcm.edu;bcgsc.ca	37	9	130206630	130206630	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF79	NM_007135	exon5	c.A651G	p.G217G	.	.	66	4	109	0	.	90
ZNF808	388558	hgsc.bcm.edu	37	19	53057390	53057390	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_001039886	exon5	c.T1221C	p.A407A	.	.	92	4	156	0	.	.
ZNF821	55565	hgsc.bcm.edu	37	16	71895749	71895749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF821	NM_001201553	exon6	c.C514A	p.H172N	.	.	67	4	137	0	.	23
ZNF845	91664	hgsc.bcm.edu	37	19	53854926	53854926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_138374	exon4	c.G998A	p.G333D	.	.	67	4	156	0	.	.
ZNF845	91664	hgsc.bcm.edu;bcgsc.ca	37	19	53855322	53855322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_138374	exon4	c.A1394G	p.K465R	.	.	68	4	120	0	.	.
ZNF90	7643	hgsc.bcm.edu;bcgsc.ca	37	19	20229869	20229869	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF90	NM_007138	exon4	c.T1506C	p.I502I	.	.	56	4	74	0	.	48
ZNF90	7643	ucsc.edu	37	19	20229460	20229460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF90	NM_007138	exon4	c.A1097G	p.E366G	.	.	43	4	65	1	.	48
ZNF93	81931	ucsc.edu;bcgsc.ca	37	19	20045260	20045260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZNF93	NM_031218	exon4	c.A1496G	p.H499R	.	.	32	4	36	0	.	91
ZSCAN20	7579	hgsc.bcm.edu;bcgsc.ca	37	1	33955141	33955141	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN20	NM_145238	exon5	c.T705C	p.H235H	.	.	58	4	82	0	.	93
ZSCAN21	7589	hgsc.bcm.edu	37	7	99661625	99661625	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZSCAN21	NM_145914	exon4	c.A807G	p.K269K	.	.	100	4	146	0	.	93
ZSCAN25	221785	hgsc.bcm.edu	37	7	99227239	99227239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_145115	exon8	c.A1231G	p.T411A	.	.	55	4	73	0	.	.
ZSWIM6	57688	hgsc.bcm.edu;bcgsc.ca	37	5	60835544	60835544	+	Silent	SNP	A	A	G	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_020928	exon12	c.A2661G	p.P887P	.	.	98	5	139	0	.	.
ZSWIM6	57688	hgsc.bcm.edu;bcgsc.ca	37	5	60839556	60839556	+	Silent	SNP	T	T	C	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	.	NM_020928	exon14	c.T3060C	p.A1020A	.	.	60	4	70	0	.	.
ZWILCH	55055	hgsc.bcm.edu	37	15	66820213	66820213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ES-A2HT-01A-12D-A183-10	TCGA-ES-A2HT-11A-11D-A183-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d6ccfd6f-2ea9-499d-a25d-4ba9d4a9258e	1a9dd052-17c3-4a9d-a566-ad9f88b85428	.	ZWILCH	NM_017975	exon10	c.G932T	p.G311V	.	.	122	5	183	0	.	91
