Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACADSB	36	ucsc.edu;bcgsc.ca	37	10	124812582	124812582	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACADSB	NM_001609	exon10	c.A1134G	p.A378A	.	.	41	4	39	0	.	92
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160196295	160196295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ACAT2	NM_005891	exon5	c.C584T	p.A195V	.	.	70	18	67	0	.	91
ADAMTS13	11093	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136302887	136302887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADAMTS13	NM_139027	exon13	c.A1454G	p.H485R	.	.	60	14	71	0	.	229
ADCY10	55811	bcgsc.ca	37	1	167798529	167798529	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY10	NM_018417	exon26	c.A3726G	p.A1242A	.	.	89	4	56	0	.	493
ADCY10	55811	broad.mit.edu;bcgsc.ca	37	1	167849412	167849412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY10	NM_018417	exon11	c.T1157C	p.V386A	.	.	123	5	78	0	.	493
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	132051783	132051783	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ADCY8	NM_001115	exon1	c.T797G	p.L266R	.	.	95	20	53	0	.	157
AFMID	125061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76183452	76183452	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AFMID	NM_001145526	exon1	c.A1G	p.M1V	.	.	43	12	48	0	.	136
AGPAT3	56894	broad.mit.edu	37	21	45400991	45400991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AGPAT3	NM_001037553	exon8	c.T965C	p.L322P	.	.	152	4	161	0	.	90
AHNAK	79026	broad.mit.edu	37	11	62293250	62293250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AHNAK	NM_001620	exon5	c.T8639C	p.V2880A	.	.	157	4	172	1	.	109
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74270860	74270860	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALB	NM_000477	exon2	c.A107G	p.K36R	.	.	223	48	201	0	.	96
ALLC	55821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3727570	3727570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ALLC	NM_018436	exon5	c.C284T	p.A95V	.	.	107	37	93	1	.	23
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	101	3	115	2	.	.
ANKRD34A	284615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145474461	145474461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ANKRD34A	NM_001039888	exon4	c.C1133T	p.P378L	.	.	67	11	68	0	.	68
AP2A1	160	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50309033	50309033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	AP2A1	NM_014203	exon21	c.C2650T	p.L884F	.	.	47	21	41	1	.	92
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21232125	21232125	+	Nonsense_Mutation	DEL	C	C	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	APOB	NM_000384	exon26	c.7615delG	p.V2539X	.	.	138	18	109	0	.	175
ARHGAP31	57514	broad.mit.edu	37	3	119101978	119101978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ARHGAP31	NM_020754	exon6	c.T587C	p.L196P	.	.	103	4	86	1	.	92
ARHGAP31	57514	broad.mit.edu	37	3	119121151	119121151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ARHGAP31	NM_020754	exon10	c.T1552C	p.S518P	.	.	111	4	98	0	.	92
ARMC2	84071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109190048	109190048	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ARMC2	NM_032131	exon4	c.C313G	p.P105A	.	.	49	16	56	0	.	68
ASXL3	80816	broad.mit.edu	37	18	31323433	31323433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ASXL3	NM_030632	exon12	c.A3621G	p.I1207M	.	.	58	3	53	0	.	49
ATM	472	broad.mit.edu	37	11	108160527	108160527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATM	NM_000051	exon29	c.A4435G	p.R1479G	.	.	107	4	101	0	.	3419
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7047886	7047886	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATN1	NM_001007026	exon7	c.C2760T	p.V920V	.	.	43	14	45	0	.	139
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	110029743	110029743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ATXN7L2	NM_153340	exon4	c.413delC	p.A138fs	.	.	115	33	112	0	.	92
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156628362	156628362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BCAN	NM_021948	exon13	c.C2465A	p.P822H	.	.	63	6	58	0	.	516
BIRC7	79444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61867529	61867529	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BIRC7	NM_139317	exon1	c.81delG	p.Q27fs	.	.	79	14	97	0	.	659
BSN	8927	broad.mit.edu	37	3	49697979	49697979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BSN	NM_003458	exon6	c.C8701T	p.P2901S	.	.	83	3	85	0	.	97
BTN1A1	696	broad.mit.edu	37	6	26508290	26508290	+	Silent	SNP	A	A	G	rs41267931	byfrequency	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BTN1A1	NM_001732	exon6	c.A882G	p.K294K	.	.	150	4	131	0	A|0.997;G|0.003	92
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	111399745	111399745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	BUB1	NM_004336	exon20	c.C2414T	p.T805I	.	.	223	21	203	1	.	1060
C11orf92	399948	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111166919	111166919	+	RNA	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	C11orf92	.	.	.	.	.	.	89	12	88	0	.	226
C17orf66	256957	broad.mit.edu	37	17	34182245	34182245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	C17orf66	NM_152781	exon15	c.G1535A	p.R512Q	.	.	236	5	244	0	.	155
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35674288	35674288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CA9	NM_001216	exon1	c.A332C	p.E111A	.	.	67	19	68	0	.	95
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54445427	54445427	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CACNG7	NM_031896	exon5	c.G708A	p.A236A	.	.	47	19	59	0	.	91
CAMKK2	10645	broad.mit.edu;bcgsc.ca	37	12	121691259	121691259	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CAMKK2	NM_153500	exon10	c.C924T	p.I308I	.	.	128	5	120	0	.	450
CARD18	59082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105009742	105009742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CARD18	NM_021571	exon2	c.C71A	p.A24D	.	.	126	59	118	1	.	206
CCDC144NL	339184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	20769875	20769875	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC144NL	NM_001004306	exon3	c.557delC	p.P186fs	.	.	83	13	71	0	.	90
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56597778	56597778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC66	NM_001141947	exon4	c.A169G	p.T57A	.	.	104	14	119	0	.	135
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49200370	49200370	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CCDC71	NM_022903	exon2	c.G1272T	p.L424L	.	.	139	23	130	0	.	91
CCER1	196477	bcgsc.ca	37	12	91347324	91347324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_152638	exon1	c.T1196C	p.F399S	.	.	72	4	65	0	.	.
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2417938	2417938	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CD81	NM_004356	exon7	c.G642T	p.V214V	.	.	38	4	47	0	.	650
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54468477	54468477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDC20B	NM_001170402	exon2	c.A65G	p.E22G	.	.	54	10	53	0	.	90
CDH18	1016	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19473467	19473467	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH18	NM_004934	exon13	c.T2241G	p.A747A	.	.	230	44	225	2	.	159
CDH4	1002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60348088	60348088	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH4	NM_001794	exon4	c.G426T	p.L142L	.	.	49	9	49	0	.	282
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	26881520	26881521	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDH9	NM_016279	exon12	c.2095_2096insT	p.Q699fs	.	.	165	45	149	0	.	99
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15510886	15510886	+	Splice_Site	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CDRT1	NM_006382	exon7	c.1232+2T>A	.	.	.	139	57	123	0	.	68
CELSR3	1951	bcgsc.ca	37	3	48697879	48697879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CELSR3	NM_001407	exon1	c.A2189G	p.D730G	.	.	122	6	98	0	.	523
CENPQ	55166	bcgsc.ca	37	6	49437942	49437942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CENPQ	NM_018132	exon2	c.A53G	p.N18S	.	.	151	5	139	0	.	92
CERK	64781	broad.mit.edu	37	22	47085919	47085919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CERK	NM_022766	exon12	c.A1511G	p.E504G	.	.	19	3	16	1	.	251
CERS5	91012	bcgsc.ca	37	12	50524400	50524400	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_147190	exon10	c.T1107C	p.C369C	.	.	121	5	145	0	.	.
CHAT	1103	ucsc.edu;bcgsc.ca	37	10	50824554	50824554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHAT	NM_020549	exon2	c.A293G	p.H98R	.	.	43	4	49	1	.	514
CHEK2	11200	broad.mit.edu	37	22	29121302	29121302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHEK2	NM_001005735	exon4	c.T502C	p.F168L	.	.	302	6	235	0	.	1515
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	361529	361529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHL1	NM_001253388	exon1	c.G70T	p.A24S	.	.	46	15	26	0	.	583
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	129241310	129241310	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CHSY3	NM_175856	exon1	c.A788T	p.D263V	.	.	62	22	49	0	.	25
CLEC4A	50856	broad.mit.edu	37	12	8290757	8290757	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CLEC4A	NM_016184	exon6	c.C588T	p.P196P	.	.	145	6	132	0	.	90
CLEC9A	283420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10205339	10205339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CLEC9A	NM_207345	exon4	c.A53T	p.D18V	.	.	88	23	83	0	.	91
CMYA5	202333	broad.mit.edu	37	5	79027567	79027567	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CMYA5	NM_153610	exon2	c.A2979G	p.E993E	.	.	139	4	116	1	.	77
CNGB3	54714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87645119	87645119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CNGB3	NM_019098	exon11	c.A1181C	p.Y394S	.	.	243	77	172	0	.	93
COL7A1	1294	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	48612816	48612816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	COL7A1	NM_000094	exon73	c.G6136A	p.G2046S	.	.	40	18	53	1	.	160
CORO6	84940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	27943827	27943828	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CORO6	NM_032854	exon7	c.896_897del	p.299_299del	.	.	66	20	63	0	.	90
CRYZ	1429	ucsc.edu	37	1	75190517	75190517	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CRYZ	.	.	.	.	.	.	151	45	127	0	.	90
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3063095	3063095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSMD1	NM_033225	exon31	c.C4915A	p.P1639T	.	.	26	18	31	0	.	86
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75969717	75969717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSPG4	NM_001897	exon10	c.G5143A	p.V1715I	.	.	38	18	41	0	.	229
CSPP1	79848	broad.mit.edu	37	8	68028266	68028266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CSPP1	NM_024790	exon11	c.C1390T	p.P464S	.	.	110	4	95	1	.	138
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41274911	41274911	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTNNB1	NM_001098209	exon8	c.T1161G	p.N387K	.	.	130	45	112	0	.	24361
CTR9	9646	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10797162	10797162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTR9	NM_014633	exon24	c.T3077A	p.L1026H	.	.	88	16	81	1	.	92
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	11705274	11705274	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	CTSB	NM_147780	exon9	c.590delC	p.P197fs	.	.	52	15	61	0	.	90
DAOA	267012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	106142291	106142291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DAOA	NM_172370	exon4	c.C323A	p.A108E	.	.	91	26	64	0	.	90
DCD	117159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55040929	55040929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DCD	NM_053283	exon2	c.G73T	p.A25S	.	.	57	18	48	0	.	91
DDX10	1662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108712068	108712068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	DDX10,NS,carcinoma,0	DDX10	NM_004398	exon15	c.G2112T	p.Q704H	.	.	230	85	217	0	.	1145
DENND2D	79961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111738547	111738547	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DENND2D	NM_024901	exon6	c.A636T	p.S212S	.	.	29	7	27	0	.	227
DIAPH2	1730	broad.mit.edu	37	X	96684649	96684649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DIAPH2	NM_007309	exon26	c.A3146G	p.E1049G	.	.	193	5	169	0	.	133
DMXL2	23312	bcgsc.ca	37	15	51780837	51780837	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DMXL2	NM_001174116	exon21	c.C4959T	p.A1653A	.	.	85	5	96	0	.	99
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70192040	70192040	+	Missense_Mutation	SNP	C	C	G	rs201999986	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001080449	exon12	c.G1796C	p.R599P	.	.	171	23	209	0	.	.
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76565546	76565546	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DNAH17	NM_173628	exon8	c.C1108T	p.L370L	.	.	77	27	84	0	.	142
DNAH8	1769	bcgsc.ca	37	6	38883035	38883035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DNAH8	NM_001206927	exon68	c.A10022G	p.Q3341R	.	.	159	5	143	1	.	615
DNM3	26052	bcgsc.ca	37	1	172222788	172222788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DNM3	NM_001136127	exon15	c.A1735G	p.K579E	.	.	59	4	34	0	.	90
DOCK10	55619	bcgsc.ca	37	2	225672464	225672464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DOCK10	NM_014689	exon33	c.T3623C	p.L1208P	.	.	115	5	88	0	.	92
DPRXP4	503645	ucsc.edu	37	17	29302455	29302455	+	RNA	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	18	5	27	0	.	.
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7585457	7585457	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DSP	NM_004415	exon24	c.G7962A	p.Q2654Q	.	.	86	17	77	0	.	518
DST	667	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56342207	56342207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	DST	NM_015548	exon72	c.G13742C	p.C4581S	.	.	142	38	165	1	.	523
EFHC1	114327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52334232	52334232	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EFHC1	NM_018100	exon7	c.G1239A	p.L413L	.	.	61	19	64	0	.	93
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38451432	38451432	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EGFLAM	NM_001205301	exon20	c.A2583G	p.R861R	.	.	52	13	48	0	.	187
EMD	2010	bcgsc.ca	37	X	153609164	153609164	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	EMD	NM_000117	exon5	c.449+2T>C	.	.	.	59	4	61	0	.	130
EP400NL	347918	hgsc.bcm.edu;broad.mit.edu	37	12	132588784	132588791	+	RNA	DEL	GGGAAGCC	GGGAAGCC	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	GGGAAGCC	GGGAAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	107	20	163	0	.	.
ERGIC1	57222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	172359509	172359509	+	Silent	SNP	G	G	A	rs144844076	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ERGIC1	NM_001031711	exon8	c.G612A	p.R204R	.	.	50	5	47	0	G|0.993;T|0.007	93
FAM138D	677784	ucsc.edu	37	12	148444	148444	+	RNA	SNP	C	C	G	rs2368790		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	99	20	85	8	.	.
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	89772242	89772242	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM13A	NM_014883	exon7	c.A936G	p.L312L	.	.	62	13	57	0	.	70
FAM71A	149647	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	212799352	212799352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM71A	NM_153606	exon1	c.C1133A	p.T378N	.	.	106	30	73	1	.	94
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	127568717	127568717	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FAM84B	NM_174911	exon2	c.G918C	p.E306D	.	.	70	7	49	0	.	22
FAM86C2P	645332	broad.mit.edu	37	11	67560494	67560494	+	RNA	SNP	T	T	C	rs61894309		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	35	4	33	0	.	.
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45946402	45946402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FBLN1	NM_006487	exon14	c.A1604G	p.N535S	.	.	46	9	38	0	.	515
FBXL7	23194	broad.mit.edu	37	5	15936871	15936871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FBXL7	NM_012304	exon4	c.G1052A	p.R351H	.	.	23	8	36	1	.	228
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4792915	4792915	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FEM1A	NM_018708	exon1	c.A1049C	p.Y350S	.	.	44	13	26	0	.	90
FIGN	55137	hgsc.bcm.edu;bcgsc.ca	37	2	164467480	164467481	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FIGN	NM_018086	exon3	c.862_863insC	p.T288fs	.	.	66	11	70	0	.	156
FILIP1	27145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76024199	76024199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FILIP1	NM_015687	exon5	c.C1349T	p.T450I	.	.	227	70	201	0	.	94
FKBP10	60681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39975631	39975631	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FKBP10	NM_021939	exon5	c.C897T	p.D299D	.	.	114	16	104	1	.	227
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128482659	128482659	+	Missense_Mutation	SNP	C	C	T	rs200215340		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FLNC	NM_001127487	exon15	c.C2296T	p.R766W	.	.	47	19	62	0	.	141
FMNL2	114793	broad.mit.edu	37	2	153496509	153496509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FMNL2	NM_052905	exon24	c.A2984G	p.E995G	.	.	260	4	225	0	.	516
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	153471433	153471433	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FMNL2	NM_052905	exon12	c.T1131C	p.D377D	.	.	127	47	149	0	.	516
FOXP2	93986	broad.mit.edu	37	7	114299629	114299629	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FOXP2	NM_148898	exon14	c.T1623C	p.A541A	.	.	199	4	177	0	.	295
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	79396668	79396668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	FRAS1	NM_025074	exon54	c.G7759T	p.V2587F	.	.	83	30	100	0	.	68
GABRE	2564	broad.mit.edu	37	X	151138750	151138750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GABRE	NM_004961	exon2	c.A181G	p.T61A	.	.	117	3	123	0	.	132
GCNT3	9245	broad.mit.edu	37	15	59911518	59911518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GCNT3	NM_004751	exon3	c.G1081A	p.A361T	.	.	93	3	80	0	.	91
GJA3	2700	mdanderson.org	37	13	20716454	20716454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GJA3	NM_021954	exon2	c.A974G	p.E325G	.	.	17	3	29	0	.	69
GLRA1	2741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	151304062	151304062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GLRA1	NM_000171	exon1	c.T49C	p.F17L	.	.	90	28	81	0	.	91
GNAT3	346562	broad.mit.edu	37	7	80123956	80123956	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GNAT3	NM_001102386	exon2	c.A126G	p.G42G	.	.	268	5	266	1	.	23
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37367438	37367438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GOLGA4	NM_001172713	exon15	c.C4127A	p.A1376D	.	.	125	44	106	0	.	93
GRAMD3	65983	broad.mit.edu	37	5	125821429	125821429	+	Missense_Mutation	SNP	C	C	T	rs138413986	byfrequency	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GRAMD3	NM_001146319	exon11	c.C1067T	p.P356L	.	.	64	3	65	0	C|1.000;T|0.000	90
GREB1	9687	bcgsc.ca	37	2	11765427	11765427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GREB1	NM_014668	exon24	c.T4295C	p.I1432T	.	.	90	4	80	0	.	91
GRIN2B	2904	broad.mit.edu	37	12	13828738	13828738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GRIN2B	NM_000834	exon4	c.T1066C	p.Y356H	.	.	148	4	131	0	.	231
GRIP1	23426	bcgsc.ca	37	12	66909519	66909519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	GRIP1	NM_001178074	exon7	c.A604G	p.R202G	.	.	73	4	63	0	.	494
GUSBP11	91316	ucsc.edu	37	22	24034460	24034460	+	RNA	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	79	28	81	0	.	.
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	45353238	45353238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HCN1	NM_021072	exon5	c.A1341T	p.E447D	.	.	124	15	103	0	.	91
HHAT	55733	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210637950	210637950	+	Missense_Mutation	SNP	G	G	A	rs143700139		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HHAT	NM_001170587	exon7	c.G961A	p.A321T	.	.	172	68	133	1	G|1.000;A|0.000	92
HSD11B1	3290	broad.mit.edu	37	1	209879215	209879215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HSD11B1	NM_001206741	exon3	c.A148G	p.M50V	.	.	157	5	117	0	.	153
HTR2B	3357	broad.mit.edu	37	2	231988385	231988385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	HTR2B	NM_000867	exon2	c.T94C	p.S32P	.	.	230	6	213	1	.	90
IFT140	9742	hgsc.bcm.edu;broad.mit.edu	37	16	1634278	1634278	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IFT140	NM_014714	exon11	c.1299delC	p.S433fs	.	.	33	11	18	0	.	95
IPO4	79711	broad.mit.edu;mdanderson.org	37	14	24657605	24657605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IPO4	NM_024658	exon3	c.A181G	p.T61A	.	.	8	3	8	0	.	226
IQCA1	79781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237406078	237406078	+	Missense_Mutation	SNP	C	C	T	rs200469019		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCA1	NM_001270585	exon2	c.G85A	p.D29N	.	.	157	36	125	0	.	23
IQCE	23288	broad.mit.edu;bcgsc.ca	37	7	2646793	2646793	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	IQCE	NM_152558	exon21	c.C1901G	p.T634S	.	.	65	5	64	0	.	226
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182358113	182358113	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGA4	NM_000885	exon11	c.C1215T	p.G405G	.	.	115	28	106	0	.	230
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124540317	124540317	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ITGB5	NM_002213	exon6	c.A785C	p.K262T	.	.	42	7	43	0	.	227
JAGN1	84522	broad.mit.edu	37	3	9934723	9934723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	JAGN1	NM_032492	exon2	c.T214C	p.Y72H	.	.	327	5	277	0	.	91
JMJD1C	221037	bcgsc.ca	37	10	64975064	64975064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	JMJD1C	NM_032776	exon7	c.A974G	p.E325G	.	.	127	5	120	1	.	275
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74168404	74168404	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KCNE3	NM_005472	exon3	c.G205C	p.A69P	.	.	98	18	105	0	.	69
KCNH4	23415	broad.mit.edu	37	17	40332950	40332950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KCNH4	NM_012285	exon1	c.A14G	p.K5R	.	.	43	3	41	1	.	153
KDR	3791	bcgsc.ca	37	4	55956196	55956196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KDR	NM_002253	exon23	c.A3119G	p.N1040S	.	.	50	4	59	0	.	2298
KIAA1210	57481	broad.mit.edu	37	X	118250526	118250526	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KIAA1210	NM_020721	exon4	c.T583C	p.L195L	.	.	139	4	118	1	.	67
KIAA1324	57535	broad.mit.edu	37	1	109733999	109733999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KIAA1324	NM_020775	exon12	c.C1451T	p.S484L	.	.	106	3	120	0	.	157
KIAA1524	57650	broad.mit.edu	37	3	108279547	108279547	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KIAA1524	NM_020890	exon14	c.T1776C	p.V592V	.	.	270	6	228	1	.	92
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	10587104	10587104	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	KLRC2	NM_002260	exon3	c.G312A	p.P104P	.	.	590	104	562	0	.	514
LARP4B	23185	bcgsc.ca	37	10	866757	866757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LARP4B	NM_015155	exon14	c.A1513G	p.R505G	.	.	75	4	95	1	.	92
LIMA1	51474	broad.mit.edu;bcgsc.ca	37	12	50575718	50575718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LIMA1	NM_001113546	exon10	c.T1246C	p.F416L	.	.	139	5	108	1	.	91
LIN52	91750	bcgsc.ca	37	14	74567933	74567933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LIN52	NM_001024674	exon5	c.T287C	p.L96P	.	.	63	4	77	0	.	135
LOC200772	0	mdanderson.org	37	2	241903018	241903018	+	RNA	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	17	3	18	0	.	.
LOC643387	0	broad.mit.edu	37	2	239141064	239141064	+	RNA	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	206	4	173	0	.	.
LOC643387	0	broad.mit.edu	37	2	239142288	239142288	+	RNA	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	107	34	92	0	.	.
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	151770044	151770044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRBA	NM_006726	exon26	c.C4265T	p.S1422F	.	.	192	77	164	0	.	157
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356953	42356953	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRFN5	NM_152447	exon3	c.T1125G	p.I375M	.	.	94	34	88	0	.	97
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141806729	141806729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRP1B	NM_018557	exon11	c.G1615T	p.D539Y	.	.	220	67	182	0	.	311
LRRC52	440699	ucsc.edu;mdanderson.org	37	1	165533062	165533062	+	RNA	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LRRC52	.	.	.	.	.	.	122	56	92	0	.	91
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74989512	74989512	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	LTBP2	NM_000428	exon16	c.C2640A	p.P880P	.	.	42	17	26	0	.	92
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	56178151	56178151	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MAP3K1	NM_005921	exon14	c.C3124G	p.L1042V	.	.	96	28	100	0	.	956
MCF2	4168	broad.mit.edu;bcgsc.ca	37	X	138670589	138670589	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MCF2	NM_001171876	exon25	c.T2607C	p.N869N	.	.	146	8	136	0	.	227
MCOLN2	255231	broad.mit.edu	37	1	85392402	85392402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MCOLN2	NM_153259	exon14	c.A1667G	p.K556R	.	.	58	3	47	0	.	94
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	48450496	48450496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ME2	NM_001168335	exon11	c.A1085T	p.Q362L	.	.	197	27	164	0	.	90
MED12	9968	bcgsc.ca	37	X	70344092	70344092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MED12	NM_005120	exon13	c.T1828C	p.S610P	.	.	57	4	46	0	.	272
MFSD11	79157	bcgsc.ca	37	17	74740473	74740473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MFSD11	NM_001242532	exon7	c.T566C	p.L189P	.	.	70	4	69	0	.	91
MMP20	9313	bcgsc.ca	37	11	102464252	102464252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MMP20	NM_004771	exon8	c.A1165G	p.R389G	.	.	74	6	69	1	.	226
MPHOSPH9	10198	broad.mit.edu	37	12	123649873	123649873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MPHOSPH9	NM_022782	exon14	c.A2287G	p.T763A	.	.	129	4	107	0	.	514
MRC2	9902	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60766320	60766320	+	Silent	SNP	G	G	T	rs144406119	byfrequency;alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MRC2	NM_006039	exon23	c.G3333T	p.T1111T	.	.	67	25	80	0	G|0.993;A|0.007	117
MS4A1	931	broad.mit.edu	37	11	60234493	60234493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MS4A1	NM_152866	exon7	c.T635C	p.V212A	.	.	178	5	180	0	.	525
MUC17	140453	broad.mit.edu	37	7	100699536	100699536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MUC17	NM_001040105	exon12	c.A13425G	p.I4475M	.	.	97	3	98	0	.	95
MUC17	140453	hgsc.bcm.edu	37	7	100682814	100682814	+	Missense_Mutation	SNP	A	A	G	rs201007776		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MUC17	NM_001040105	exon3	c.A8117G	p.N2706S	.	.	112	6	99	0	A|0.999;G|0.001	95
MUC4	4585	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513177	195513177	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MUC4	NM_018406	exon2	c.C5274A	p.A1758A	.	.	334	44	307	1	.	90
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26436361	26436361	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon23	c.C2508A	p.V836V	.	.	106	14	92	0	.	1007
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26465727	26465727	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	MYO3A	NM_017433	exon31	c.A4391G	p.H1464R	.	.	85	21	102	0	.	1007
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	78400495	78400495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NAV3	NM_014903	exon8	c.G1177A	p.A393T	.	.	121	28	107	0	.	279
NGLY1	55768	broad.mit.edu;bcgsc.ca	37	3	25761522	25761522	+	Missense_Mutation	SNP	T	T	C	rs7635089	bycluster;by2hit2allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NGLY1	NM_018297	exon11	c.A1772G	p.Q591R	.	.	143	5	109	0	T|1.000;|0.000	135
NKG7	4818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51875422	51875422	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NKG7	NM_005601	exon2	c.T297C	p.F99F	.	.	44	9	37	0	.	90
NLGN4X	57502	broad.mit.edu	37	X	5821576	5821576	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NLGN4X	NM_181332	exon5	c.C1143T	p.D381D	.	.	151	76	153	0	.	195
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55453049	55453049	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NLRP7	NM_001127255	exon2	c.C31G	p.Q11E	.	.	93	24	93	0	.	291
NOP14-AS1	317648	ucsc.edu	37	4	2940347	2940347	+	RNA	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	17	0	17	0	.	.
NPR2	4882	bcgsc.ca	37	9	35802525	35802525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NPR2	NM_003995	exon11	c.T1736C	p.L579P	.	.	142	5	157	0	.	335
NSUN5P1	155400	broad.mit.edu	37	7	75045045	75045045	+	RNA	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NSUN5P1	.	.	.	.	.	.	125	5	96	0	.	22
NUP50	10762	broad.mit.edu	37	22	45574335	45574335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	NUP50	NM_007172	exon5	c.T557C	p.I186T	.	.	275	5	212	1	.	68
OC90	729330	broad.mit.edu;bcgsc.ca	37	8	133051316	133051316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OC90	NM_001080399	exon7	c.A512G	p.E171G	.	.	103	6	63	0	.	206
OR10Z1	128368	broad.mit.edu	37	1	158576862	158576862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR10Z1	NM_001004478	exon1	c.T634C	p.F212L	.	.	233	4	155	0	.	70
OR2A12	346525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143792372	143792372	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR2A12	NM_001004135	exon1	c.A172G	p.M58V	.	.	131	44	131	0	.	92
OR6P1	128366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158533217	158533217	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	OR6P1	NM_001160325	exon1	c.T178A	p.Y60N	.	.	100	42	64	0	.	68
PARP2	10038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20822996	20822996	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PARP2	NM_005484	exon9	c.A831C	p.A277A	.	.	91	30	100	0	.	661
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57326459	57326459	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PEG3	NM_001146184	exon9	c.G3351A	p.V1117V	.	.	64	23	72	0	.	164
PFKP	5214	broad.mit.edu	37	10	3146006	3146006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PFKP	NM_002627	exon5	c.T490C	p.Y164H	.	.	55	5	47	0	.	253
PGR	5241	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	100999292	100999292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PGR	NM_000926	exon1	c.C510G	p.C170W	.	.	13	5	15	0	.	652
PIGU	128869	bcgsc.ca	37	20	33225691	33225691	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PIGU	NM_080476	exon5	c.A417G	p.K139K	.	.	46	5	60	0	.	226
PKHD1L1	93035	broad.mit.edu	37	8	110539094	110539094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PKHD1L1	NM_177531	exon77	c.T12566C	p.V4189A	.	.	200	5	110	0	.	145
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42436338	42436338	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLA2G4F	NM_213600	exon18	c.A1980T	p.T660T	.	.	34	10	26	0	.	94
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40585896	40585896	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLCB2	NM_004573	exon20	c.C2091T	p.R697R	.	.	98	23	91	0	.	275
PLEKHG2	64857	bcgsc.ca	37	19	39908236	39908236	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PLEKHG2	NM_022835	exon8	c.T786C	p.G262G	.	.	47	4	62	0	.	274
POU5F1P4	645682	ucsc.edu	37	1	155403319	155403319	+	RNA	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	.	.	.	81	23	57	0	.	.
PPARA	5465	broad.mit.edu	37	22	46594485	46594485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPARA	NM_001001928	exon3	c.A205G	p.T69A	.	.	46	5	54	1	.	611
PPP1R3A	5506	broad.mit.edu	37	7	113519979	113519979	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPP1R3A	NM_002711	exon4	c.T1168A	p.C390S	.	.	254	4	214	1	.	832
PPP1R9A	55607	bcgsc.ca	37	7	94915567	94915567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPP1R9A	NM_001166160	exon18	c.A3659G	p.D1220G	.	.	76	5	82	0	.	208
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857048	46857048	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PPP5C	NM_006247	exon2	c.C165T	p.I55I	.	.	78	23	77	0	.	227
PROSER1	80209	broad.mit.edu;bcgsc.ca	37	13	39587551	39587551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_025138	exon11	c.G1838A	p.S613N	.	.	68	4	70	0	.	.
PSD3	23362	broad.mit.edu	37	8	18729490	18729490	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSD3	NM_015310	exon3	c.G884A	p.R295Q	.	.	150	4	152	0	.	93
PSD4	23550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113940279	113940279	+	Silent	SNP	C	C	T	rs147089589		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSD4	NM_012455	exon2	c.C246T	p.D82D	.	.	87	29	71	1	C|1.000;T|0.000	229
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	13	20356641	20356641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PSPC1	NM_001042414	exon2	c.T257C	p.V86A	.	.	48	4	40	1	.	135
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157369433	157369433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	PTPRN2	NM_002847	exon19	c.C2655G	p.F885L	.	.	41	9	40	0	.	295
RAB23	51715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57055398	57055398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RAB23	NM_016277	exon7	c.G575T	p.G192V	.	.	93	34	95	0	.	660
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79298691	79298691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RASGRF1	NM_002891	exon15	c.G1951A	p.A651T	.	.	74	20	57	0	.	662
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103159876	103159876	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RELN	NM_173054	exon49	c.A7756T	p.T2586S	.	.	121	16	95	0	.	574
RGS12	6002	ucsc.edu;bcgsc.ca	37	4	3419229	3419229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS12	NM_002926	exon9	c.A2722G	p.R908G	.	.	46	5	32	0	.	226
RGS16	6004	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182572454	182572454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RGS16	NM_002928	exon2	c.G65A	p.R22H	.	.	143	33	138	1	.	227
RNF180	285671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63509811	63509811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RNF180	NM_001113561	exon4	c.G658T	p.A220S	.	.	116	29	111	1	.	90
RNF208	727800	mdanderson.org	37	9	140114880	140114880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_031297	exon1	c.A785G	p.X262W	.	.	11	3	8	0	.	.
RPL5	6125	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	93307405	93307405	+	Missense_Mutation	SNP	C	C	T	rs200315052		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPL5	NM_000969	exon8	c.C877T	p.R293W	.	.	166	47	94	1	C|0.999;T|0.000	90
RPRM	56475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	154334986	154334986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RPRM	NM_019845	exon1	c.C94A	p.Q32K	.	.	30	9	28	0	.	204
RRM2B	50484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	103237178	103237178	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RRM2B	NM_001172477	exon4	c.C606A	p.I202I	.	.	162	33	71	0	.	229
RRP1	8568	bcgsc.ca	37	21	45209580	45209580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RRP1	NM_003683	exon1	c.A70G	p.T24A	.	.	37	4	38	0	.	90
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179023595	179023595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RUFY1	NM_025158	exon13	c.C1544T	p.A515V	.	.	39	13	36	0	.	157
RYR3	6263	broad.mit.edu	37	15	34130273	34130273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	RYR3	NM_001036	exon89	c.G12092A	p.R4031H	.	.	145	3	123	0	.	520
S1PR3	1903	broad.mit.edu	37	9	91616945	91616945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	S1PR3	NM_005226	exon2	c.T830C	p.L277P	.	.	57	4	73	1	.	949
SCN7A	6332	broad.mit.edu	37	2	167300120	167300120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SCN7A	NM_002976	exon13	c.T1693C	p.F565L	.	.	180	4	149	0	.	67
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	169702100	169702100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SELE	NM_000450	exon3	c.C77A	p.T26N	.	.	130	17	82	0	.	95
SFRP4	6424	broad.mit.edu	37	7	37947220	37947220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SFRP4	NM_003014	exon6	c.A902G	p.K301R	.	.	152	4	150	0	.	658
SFT2D2	375035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	168195328	168195328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SFT2D2	NM_199344	exon1	c.T11C	p.L4P	.	.	26	10	36	0	.	69
SH2D7	646892	bcgsc.ca	37	15	78393778	78393778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001101404	exon5	c.A1183G	p.T395A	.	.	60	4	60	0	.	.
SH3BP5L	80851	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	249106250	249106250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SH3BP5L	NM_030645	exon7	c.A1031G	p.D344G	.	.	20	4	13	0	.	90
SHC2	25759	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	436421	436421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SHC2	NM_012435	exon6	c.A785G	p.D262G	.	.	18	5	33	0	.	392
SHPRH	257218	broad.mit.edu	37	6	146264634	146264634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SHPRH	NM_173082	exon9	c.A1883G	p.E628G	.	.	172	4	165	0	.	92
SHPRH	257218	broad.mit.edu	37	6	146275907	146275907	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SHPRH	NM_173082	exon2	c.A552G	p.E184E	.	.	190	5	172	0	.	92
SLC16A12	387700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91193059	91193059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC16A12	NM_213606	exon8	c.G1313T	p.S438I	.	.	53	15	64	1	.	69
SLC26A8	116369	broad.mit.edu	37	6	35923037	35923037	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC26A8	NM_052961	exon17	c.A2124T	p.S708S	.	.	132	5	127	1	.	92
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18292223	18292223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC39A12	NM_001145195	exon12	c.G1883A	p.C628Y	.	.	163	65	123	0	.	154
SLC6A5	9152	broad.mit.edu	37	11	20629117	20629117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SLC6A5	NM_004211	exon5	c.T904C	p.F302L	.	.	161	6	201	0	.	156
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32000381	32000381	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SNTA1	NM_003098	exon4	c.G909A	p.Q303Q	.	.	42	14	44	0	.	91
SORL1	6653	broad.mit.edu	37	11	121460001	121460001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SORL1	NM_003105	exon29	c.A3980G	p.E1327G	.	.	190	7	193	1	.	228
SPATA18	132671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52948586	52948586	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPATA18	NM_145263	exon10	c.T1389C	p.A463A	.	.	63	21	76	0	.	72
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158655029	158655029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTA1	NM_003126	exon2	c.A133G	p.R45G	.	.	154	74	102	0	.	142
SPTAN1	6709	broad.mit.edu;bcgsc.ca	37	9	131377967	131377967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SPTAN1	NM_001130438	exon41	c.C5205A	p.F1735L	.	.	68	5	56	0	.	158
SRRM5	100170229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44116772	44116772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001145641	exon1	c.G499A	p.G167R	.	.	59	15	36	0	.	.
STAT4	6775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191927489	191927489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STAT4	NM_001243835	exon9	c.A940G	p.N314D	.	.	149	43	119	0	.	914
STEAP2	261729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89854507	89854507	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STEAP2	NM_001244946	exon3	c.A111G	p.G37G	.	.	191	50	177	0	.	92
STX12	23673	broad.mit.edu;bcgsc.ca	37	1	28144417	28144417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STX12	NM_177424	exon7	c.A632G	p.D211G	.	.	124	6	157	0	.	153
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130428513	130428513	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	STXBP1	NM_001032221	exon9	c.C732A	p.L244L	.	.	54	17	53	0	.	91
SYK	6850	broad.mit.edu	37	9	93626923	93626923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SYK	NM_003177	exon5	c.T770C	p.V257A	.	.	73	4	84	1	.	1402
SYN3	8224	bcgsc.ca	37	22	32934031	32934031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	SYN3	NM_133633	exon8	c.T983C	p.M328T	.	.	55	4	58	0	.	92
TACR2	6865	broad.mit.edu	37	10	71175986	71175986	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TACR2	NM_001057	exon1	c.C94T	p.Q32X	.	.	77	3	73	0	.	522
TANGO6	79613	broad.mit.edu;bcgsc.ca	37	16	68901085	68901085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_024562	exon4	c.T956C	p.V319A	.	.	65	5	60	0	.	.
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	9629277	9629277	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TAS2R1	NM_019599	exon1	c.A868T	p.K290X	.	.	107	30	74	0	.	93
TBC1D9B	23061	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	179306633	179306633	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TBC1D9B	NM_198868	exon8	c.A1411T	p.K471X	.	.	144	47	145	1	.	154
TCHH	7062	broad.mit.edu	37	1	152081715	152081715	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TCHH	NM_007113	exon3	c.A3978G	p.E1326E	.	.	154	5	96	0	.	72
TDRD1	56165	bcgsc.ca	37	10	115980538	115980538	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TDRD1	NM_198795	exon19	c.A2706G	p.K902K	.	.	106	4	116	0	.	90
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104506642	104506642	+	Missense_Mutation	SNP	G	G	A	rs182776644	alternate_allele	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TDRD9	NM_153046	exon33	c.G3826A	p.V1276I	.	.	90	25	93	0	G|0.999;T|0.000	70
TELO2	9894	ucsc.edu	37	16	1550623	1550623	+	Missense_Mutation	SNP	G	G	A	rs146959869		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TELO2	NM_016111	exon9	c.G1204A	p.V402M	.	.	15	8	15	0	G|0.999;A|0.001	90
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69942515	69942515	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TEX11	NM_001003811	exon14	c.C1002T	p.P334P	.	.	63	43	55	0	.	178
TEX36	387718	bcgsc.ca	37	10	127344696	127344696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001128202	exon4	c.T334C	p.C112R	.	.	69	4	69	0	.	.
TMEM106C	79022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48359775	48359775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMEM106C	NM_001143843	exon4	c.A406G	p.I136V	.	.	145	40	127	0	.	90
TMEM209	84928	bcgsc.ca	37	7	129821522	129821522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMEM209	NM_032842	exon9	c.A1061G	p.E354G	.	.	75	4	87	0	.	92
TMPRSS11E	28983	broad.mit.edu	37	4	69337230	69337230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMPRSS11E	NM_014058	exon5	c.T379C	p.S127P	.	.	405	6	443	1	.	70
TMPRSS13	84000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117784524	117784524	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMPRSS13	NM_001206790	exon5	c.A777G	p.S259S	.	.	60	12	42	0	.	91
TMPRSS15	5651	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19651306	19651306	+	Silent	SNP	A	A	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TMPRSS15	NM_002772	exon23	c.T2739G	p.A913A	.	.	84	24	97	7	.	160
TONSL	4796	bcgsc.ca	37	8	145666207	145666207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TONSL	NM_013432	exon9	c.T1058C	p.I353T	.	.	111	6	62	0	.	92
TPPP3	51673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67424387	67424387	+	Missense_Mutation	SNP	C	C	T	rs146906089		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TPPP3	NM_016140	exon4	c.G337A	p.V113I	.	.	65	16	55	0	C|1.000;T|0.000	90
TRAPPC11	60684	broad.mit.edu	37	4	184627958	184627958	+	Splice_Site	SNP	A	A	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_199053	exon28	c.3056-2A>T	.	.	.	83	3	77	0	.	.
TRIM31	11074	broad.mit.edu	37	6	30080384	30080384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIM31	NM_007028	exon2	c.T199C	p.F67L	.	.	146	6	124	1	.	658
TRIM33	51592	ucsc.edu	37	1	114945422	114945422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIM33	NM_033020	exon16	c.A2852G	p.K951R	.	.	200	1	143	0	.	1351
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	114506845	114506845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIM36	NM_001017397	exon2	c.C138A	p.D46E	.	.	129	15	108	0	.	725
TRIM49C	642612	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	89774525	89774525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001195234	exon8	c.G1166T	p.C389F	.	.	98	33	122	0	.	.
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230724096	230724096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TRIP12	NM_004238	exon3	c.C293T	p.T98I	.	.	201	70	156	0	.	572
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49724529	49724529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TROAP	NM_005480	exon13	c.G1901A	p.G634E	.	.	39	15	36	0	.	91
TRPC7	57113	broad.mit.edu	37	5	135587501	135587501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_020389	exon6	c.A1415G	p.N472S	.	.	72	4	68	1	.	.
TTLL10	254173	broad.mit.edu	37	1	1132010	1132010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTLL10	NM_001130045	exon14	c.T1432C	p.F478L	.	.	62	4	82	0	.	153
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179436094	179436094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon326	c.G74765C	p.R24922T	.	.	170	47	142	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179636192	179636192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	TTN	NM_001267550	exon34	c.C7862A	p.A2621D	.	.	119	17	102	0	.	636
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34827055	34827055	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UHRF1BP1	NM_017754	exon14	c.C2922G	p.S974S	.	.	70	27	52	0	.	93
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96141185	96141185	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UNC5C	NM_003728	exon8	c.G1251T	p.S417S	.	.	196	73	189	0	.	94
USP21	27005	broad.mit.edu	37	1	161132750	161132750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	USP21	NM_012475	exon6	c.G935A	p.R312Q	.	.	142	3	98	0	.	660
UTP14A	10813	broad.mit.edu	37	X	129058928	129058928	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	UTP14A	NM_006649	exon12	c.A1506G	p.L502L	.	.	88	3	71	0	.	132
WBSCR28	135886	broad.mit.edu;bcgsc.ca	37	7	73280013	73280013	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	WBSCR28	NM_182504	exon3	c.T608G	p.L203R	.	.	93	7	108	0	.	90
WDFY4	57705	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	50151490	50151490	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	WDFY4	NM_020945	exon49	c.C7745A	p.S2582X	.	.	20	5	23	0	.	22
ZBED1	9189	broad.mit.edu	37	X	2406948	2406948	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZBED1	NM_001171135	exon2	c.C1813T	p.L605L	.	.	68	3	47	0	.	40
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G	rs3911884		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZC3H11A	NM_014827	exon20	c.C2414G	p.S805X	.	.	195	4	143	0	.	515
ZC3H7B	23264	bcgsc.ca	37	22	41747578	41747578	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZC3H7B	NM_017590	exon17	c.A1962G	p.E654E	.	.	170	5	157	0	.	90
ZDHHC7	55625	broad.mit.edu	37	16	85015569	85015569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZDHHC7	NM_001145548	exon5	c.A458G	p.E153G	.	.	119	5	137	0	.	289
ZMIZ2	83637	bcgsc.ca	37	7	44805831	44805831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZMIZ2	NM_031449	exon17	c.C2311T	p.L771F	.	.	52	4	40	0	.	137
ZMYND12	84217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	42914268	42914268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZMYND12	NM_032257	exon3	c.C294A	p.Y98X	.	.	88	38	119	0	.	91
ZNF184	7738	broad.mit.edu	37	6	27425135	27425135	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF184	NM_007149	exon4	c.A129G	p.K43K	.	.	127	4	119	0	.	91
ZNF19	7567	broad.mit.edu	37	16	71509951	71509951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF19	NM_006961	exon6	c.G499A	p.G167R	.	.	143	4	133	0	.	90
ZNF350	59348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52468795	52468795	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF350	NM_021632	exon5	c.A911C	p.N304T	.	.	183	57	153	0	.	227
ZNF394	84124	bcgsc.ca	37	7	99091179	99091179	+	Silent	SNP	C	C	T	rs115901783	byfrequency	TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF394	NM_032164	exon3	c.G1659A	p.S553S	.	.	92	5	91	1	C|0.992;T|0.008	90
ZNF469	84627	broad.mit.edu;bcgsc.ca	37	16	88498781	88498781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001127464	exon2	c.G4819A	p.A1607T	.	.	28	4	34	0	.	.
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48371172	48371172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF488	NM_153034	exon2	c.G640A	p.V214I	.	.	47	13	57	0	.	91
ZNF527	84503	broad.mit.edu	37	19	37879793	37879793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF527	NM_032453	exon5	c.A842G	p.D281G	.	.	166	5	164	1	.	70
ZNF578	147660	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014979	53014979	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	NM_001099694	exon6	c.C1345A	p.H449N	.	.	114	32	99	1	.	.
ZNF626	199777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20807980	20807980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF626	NM_001076675	exon4	c.G703T	p.G235C	.	.	39	8	29	0	.	515
ZNF627	199692	broad.mit.edu;bcgsc.ca	37	19	11728045	11728045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF627	NM_145295	exon4	c.A727G	p.R243G	.	.	86	4	101	0	.	91
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668481	53668481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF665	NM_024733	exon4	c.G1262T	p.R421L	.	.	94	29	74	0	.	70
ZNF699	374879	broad.mit.edu;bcgsc.ca	37	19	9407513	9407513	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF699	NM_198535	exon5	c.T567C	p.N189N	.	.	158	5	140	0	.	68
ZNF780A	284323	broad.mit.edu	37	19	40581974	40581974	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF780A	NM_001142577	exon6	c.A378G	p.R126R	.	.	311	6	254	0	.	22
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146696966	146696966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNF827	NM_178835	exon10	c.G2668A	p.G890R	.	.	59	21	59	0	.	22
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	29445870	29445871	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZNRF3	NM_001206998	exon8	c.1701_1702del	p.567_568del	.	.	43	10	42	0	.	69
ZSWIM3	140831	broad.mit.edu	37	20	44505767	44505767	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	ZSWIM3	NM_080752	exon2	c.T570C	p.A190A	.	.	124	4	75	0	.	92
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	118896162	118896163	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G84R	.	.	.	.	.	.	.	
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72183571	72183572	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.G338F	.	.	.	.	.	.	.	
DSPP	1834	hgsc.bcm.edu	37	4	88536019	88536020	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-FV-A2QQ-01A-11D-A22F-10	TCGA-FV-A2QQ-10B-01D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4904d56f-0fe7-4482-8f6d-9e54d261f399	e31c3b51-9a28-4191-b67f-21ac68e47c1e	.	.	.	.	.	p.D736N	.	.	.	.	.	.	.	
