Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAK1	22848	bcgsc.ca	37	2	69704080	69704080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AAK1	NM_014911	exon21	c.A2723G	p.E908G	.	.	57	4	103	0	.	333
AARS	16	hgsc.bcm.edu	37	16	70303590	70303590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AARS	NM_001605	exon7	c.T893C	p.L298P	.	.	107	5	89	0	.	91
ABCA13	154664	hgsc.bcm.edu	37	7	48312769	48312769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCA13	NM_152701	exon17	c.T3506C	p.M1169T	.	.	97	4	70	0	.	521
ABCF3	55324	hgsc.bcm.edu;bcgsc.ca	37	3	183907370	183907370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCF3	NM_018358	exon13	c.T1139C	p.V380A	.	.	151	8	124	0	.	94
ABCG4	64137	hgsc.bcm.edu	37	11	119030961	119030961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABCG4	NM_022169	exon13	c.A1462G	p.S488G	.	.	141	6	108	0	.	92
ABHD16A	7920	hgsc.bcm.edu	37	6	31669898	31669898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ABHD16A	NM_021160	exon2	c.T142C	p.Y48H	.	.	93	4	77	0	.	91
ACACB	32	hgsc.bcm.edu	37	12	109613960	109613960	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACACB	NM_001093	exon8	c.A1329G	p.A443A	.	.	94	4	74	0	.	98
ACAD10	80724	hgsc.bcm.edu	37	12	112186252	112186252	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACAD10	NM_001136538	exon18	c.A2710G	p.T904A	.	.	97	4	63	0	.	92
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	rs141522105	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	.	.	84	6	76	0	C|1.000;T|0.000	156
ACSF3	197322	hgsc.bcm.edu	37	16	89180759	89180759	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACSF3	NM_174917	exon6	c.A990G	p.S330S	.	.	139	9	121	0	.	68
ACSM2A	123876	hgsc.bcm.edu	37	16	20497902	20497902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ACSM2A	NM_001010845	exon15	c.T1636C	p.F546L	.	.	163	7	149	0	.	91
ADAD2	161931	hgsc.bcm.edu;bcgsc.ca	37	16	84229269	84229269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAD2	NM_139174	exon7	c.A1264G	p.S422G	.	.	70	4	118	0	.	68
ADAMTS13	11093	broad.mit.edu	37	9	136321335	136321335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAMTS13	NM_139025	exon26	c.C3713T	p.A1238V	.	.	128	4	74	0	.	229
ADAMTS18	170692	hgsc.bcm.edu;bcgsc.ca	37	16	77326981	77326981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ADAMTS18	NM_199355	exon20	c.T3181C	p.W1061R	.	.	63	4	44	0	.	1036
AK4	205	hgsc.bcm.edu	37	1	65690526	65690526	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AK4	NM_203464	exon5	c.T530C	p.V177A	.	.	122	6	108	0	.	253
AKAP6	9472	hgsc.bcm.edu	37	14	33291695	33291695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AKAP6	NM_004274	exon13	c.T4676C	p.L1559P	.	.	93	4	90	0	.	733
AKNA	80709	bcgsc.ca	37	9	117136402	117136402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AKNA	NM_030767	exon4	c.A1387G	p.T463A	.	.	142	8	99	0	.	94
ALK	238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	29451807	29451807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALK	NM_004304	exon16	c.G2758T	p.G920C	.	.	385	164	331	1	.	3833
ALLC	55821	hgsc.bcm.edu	37	2	3729256	3729256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALLC	NM_018436	exon6	c.A331G	p.R111G	.	.	79	4	79	0	.	23
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	56247584	56247584	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ALPK2	NM_052947	exon4	c.G424T	p.E142X	.	.	306	125	270	1	.	765
AMBRA1	55626	hgsc.bcm.edu	37	11	46431903	46431903	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMBRA1	NM_001267782	exon18	c.T3141C	p.G1047G	.	.	96	4	79	0	.	136
AMPD1	270	hgsc.bcm.edu	37	1	115215782	115215782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMPD1	NM_000036	exon16	c.T2296C	p.C766R	.	.	149	6	164	0	.	293
AMPD3	272	hgsc.bcm.edu	37	11	10500172	10500172	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AMPD3	NM_000480	exon3	c.T348C	p.S116S	.	.	114	5	89	0	.	291
ANAPC7	51434	hgsc.bcm.edu	37	12	110812082	110812082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANAPC7	NM_016238	exon11	c.A1667G	p.E556G	.	.	83	5	57	0	.	226
ANKRD13D	338692	hgsc.bcm.edu	37	11	67067337	67067337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD13D	NM_207354	exon9	c.A920G	p.Q307R	.	.	100	4	108	0	.	91
ANKRD18DP	348840	bcgsc.ca	37	3	197790653	197790653	+	RNA	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	78	4	64	0	.	.
ANKRD24	170961	hgsc.bcm.edu	37	19	4200121	4200121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD24	NM_133475	exon5	c.A296G	p.E99G	.	.	114	5	100	0	.	68
ANKRD6	22881	hgsc.bcm.edu	37	6	90340295	90340295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ANKRD6	NM_001242809	exon16	c.T1756C	p.S586P	.	.	99	5	130	0	.	93
AP3M2	10947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42022975	42022975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3M2	NM_001134296	exon7	c.C700T	p.H234Y	.	.	329	139	245	0	.	90
AP3S1	1176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115249174	115249174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	AP3S1	NM_001284	exon6	c.C569A	p.P190H	.	.	230	40	225	0	.	90
AP5B1	91056	hgsc.bcm.edu	37	11	65547419	65547419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_138368	exon2	c.T545C	p.V182A	.	.	100	6	115	0	.	.
ARAP3	64411	hgsc.bcm.edu	37	5	141038204	141038204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARAP3	NM_022481	exon24	c.A3353G	p.D1118G	.	.	87	6	81	0	.	291
ARF4	378	bcgsc.ca	37	3	57569647	57569647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARF4	NM_001660	exon3	c.A236G	p.K79R	.	.	186	6	193	1	.	228
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	11	128932247	128932247	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGAP32	NM_001142685	exon9	c.A849G	p.G283G	.	.	47	4	43	0	.	231
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73076917	73076917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF17	NM_014786	exon20	c.C5920A	p.R1974S	.	.	90	28	72	0	.	227
ARHGEF26	26084	hgsc.bcm.edu	37	3	153847474	153847474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF26	NM_001251962	exon4	c.A1235G	p.K412R	.	.	93	4	198	0	.	47
ARHGEF4	50649	hgsc.bcm.edu	37	2	131801915	131801915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARHGEF4	NM_032995	exon12	c.A1643G	p.D548G	.	.	209	9	162	0	.	292
ARNTL2	56938	hgsc.bcm.edu	37	12	27573461	27573461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARNTL2	NM_020183	exon17	c.T1907C	p.L636P	.	.	67	5	74	0	.	92
ARPC3	10094	hgsc.bcm.edu	37	12	110874444	110874444	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ARPC3	NM_005719	exon5	c.A297G	p.G99G	.	.	94	4	102	0	.	91
ASAP3	55616	hgsc.bcm.edu	37	1	23759640	23759640	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASAP3	NM_017707	exon22	c.T2253C	p.C751C	.	.	164	7	118	0	.	155
ASH1L	55870	hgsc.bcm.edu	37	1	155448559	155448559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASH1L	NM_018489	exon3	c.A4102G	p.S1368G	.	.	145	5	50	0	.	234
ASXL3	80816	hgsc.bcm.edu;bcgsc.ca	37	18	31326119	31326119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ASXL3	NM_030632	exon12	c.T6307C	p.Y2103H	.	.	80	4	48	0	.	49
ATF1	466	bcgsc.ca	37	12	51213468	51213468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATF1	NM_005171	exon7	c.T722C	p.L241P	.	.	85	4	99	0	.	685
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10527419	10527419	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATF7IP2	NM_024997	exon4	c.G873A	p.E291E	.	.	190	47	168	0	.	186
ATP12A	479	hgsc.bcm.edu	37	13	25266639	25266639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1159G	p.T387A	.	.	87	4	66	0	.	137
ATP12A	479	hgsc.bcm.edu;bcgsc.ca	37	13	25266681	25266681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP12A	NM_001185085	exon9	c.A1201G	p.T401A	.	.	125	7	101	0	.	137
ATP1A4	480	hgsc.bcm.edu	37	1	160151564	160151564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP1A4	NM_144699	exon19	c.T2827C	p.S943P	.	.	447	18	175	0	.	94
ATP1B1	481	broad.mit.edu	37	1	169099307	169099307	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP1B1	NM_001677	exon5	c.T627C	p.L209L	.	.	192	7	76	2	.	540
ATP2C2	9914	hgsc.bcm.edu	37	16	84438813	84438813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP2C2	NM_014861	exon3	c.A290G	p.D97G	.	.	144	6	128	0	.	91
ATP6V1B2	526	hgsc.bcm.edu	37	8	20074766	20074766	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ATP6V1B2	NM_001693	exon12	c.A1197G	p.S399S	.	.	95	4	80	0	.	90
BACH2	60468	hgsc.bcm.edu	37	6	90661367	90661367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BACH2	NM_021813	exon7	c.A458G	p.H153R	.	.	46	4	79	0	.	231
BANK1	55024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102783739	102783739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BANK1	NM_017935	exon4	c.G681T	p.E227D	.	.	187	73	144	0	.	93
BAZ1A	11177	hgsc.bcm.edu	37	14	35227928	35227928	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BAZ1A	NM_013448	exon25	c.A4368G	p.K1456K	.	.	65	4	58	0	.	291
BAZ2A	11176	hgsc.bcm.edu	37	12	56995380	56995380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BAZ2A	NM_013449	exon20	c.T4027C	p.S1343P	.	.	88	5	67	0	.	22
BCL9L	283149	hgsc.bcm.edu	37	11	118769314	118769314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BCL9L	NM_182557	exon8	c.A4310G	p.K1437R	.	.	113	5	159	0	.	229
BET3L	100128327	hgsc.bcm.edu;bcgsc.ca	37	6	116866643	116866643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001139444	exon1	c.A35G	p.H12R	.	.	98	4	189	0	.	.
BPTF	2186	broad.mit.edu	37	17	65941983	65941983	+	Missense_Mutation	SNP	T	T	C	rs74959789		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BPTF	NM_004459	exon23	c.T7537C	p.S2513P	.	.	175	15	103	0	.	94
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32953916	32953924	+	In_Frame_Del	DEL	GATTTATAT	GATTTATAT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GATTTATAT	GATTTATAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon23	c.8983_8991del	p.2995_2997del	.	.	168	17	181	0	.	3153
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32937516	32937516	+	Missense_Mutation	SNP	A	A	G	rs80359064		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRCA2	NM_000059	exon18	c.A8177G	p.Y2726C	.	.	168	66	139	0	.	3153
BRSK1	84446	hgsc.bcm.edu	37	19	55815939	55815939	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BRSK1	NM_032430	exon14	c.A1368G	p.S456S	.	.	73	5	46	0	.	759
BTRC	8945	hgsc.bcm.edu	37	10	103190119	103190119	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	BTRC	NM_001256856	exon2	c.T66C	p.S22S	.	.	82	4	146	0	.	659
C10orf76	79591	bcgsc.ca	37	10	103799855	103799855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C10orf76	NM_024541	exon2	c.A17G	p.K6R	.	.	58	4	42	0	.	90
C14orf1	11161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76117958	76117958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C14orf1	NM_007176	exon5	c.G363A	p.M121I	.	.	104	37	76	0	.	90
C15orf52	388115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40628995	40628995	+	Silent	SNP	T	T	C	rs143912259		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C15orf52	NM_207380	exon8	c.A894G	p.K298K	.	.	74	39	64	0	T|1.000;C|0.000	153
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81095083	81095083	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf46	NM_001100873	exon3	c.C871T	p.L291L	.	.	208	67	184	0	.	90
C16orf78	123970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49412388	49412388	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C16orf78	NM_144602	exon3	c.G278A	p.G93E	.	.	43	14	42	0	.	90
C17orf47	284083	broad.mit.edu;bcgsc.ca	37	17	56621120	56621120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C17orf47	NM_001038704	exon1	c.T428C	p.V143A	.	.	417	13	212	0	.	135
C18orf25	147339	hgsc.bcm.edu	37	18	43833701	43833701	+	Missense_Mutation	SNP	T	T	G	rs77850739		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C18orf25	NM_145055	exon4	c.T937G	p.S313A	.	.	158	7	87	0	.	515
C19orf33	64073	hgsc.bcm.edu	37	19	38795554	38795554	+	Missense_Mutation	SNP	A	A	G	rs79297344		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C19orf33	NM_033520	exon4	c.A271G	p.K91E	.	.	311	13	226	0	.	90
C4orf46	201725	hgsc.bcm.edu	37	4	159592902	159592902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C4orf46	NM_001008393	exon1	c.T52C	p.S18P	.	.	125	9	174	0	.	91
C9orf173	441476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140147365	140147365	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	C9orf173	NM_001004353	exon5	c.G744A	p.S248S	.	.	70	36	63	0	.	46
CACNA1E	777	hgsc.bcm.edu	37	1	181452881	181452881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CACNA1E	NM_001205293	exon1	c.A1G	p.M1V	.	.	75	4	39	0	.	95
CACNA1G	8913	hgsc.bcm.edu	37	17	48703642	48703642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CACNA1G	NM_018896	exon38	c.A6664G	p.S2222G	.	.	123	5	96	0	.	67
CADM1	23705	hgsc.bcm.edu	37	11	115049371	115049371	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CADM1	NM_014333	exon9	c.A1203G	p.R401R	.	.	54	4	45	0	.	92
CADM4	199731	hgsc.bcm.edu	37	19	44127546	44127546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CADM4	NM_145296	exon9	c.A1103G	p.E368G	.	.	126	9	91	0	.	90
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67701207	67701207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CAND1	NM_018448	exon11	c.C2960T	p.T987M	.	.	82	34	57	0	.	516
CAPN11	11131	hgsc.bcm.edu	37	6	44140054	44140054	+	Missense_Mutation	SNP	T	T	C	rs111320370	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CAPN11	NM_007058	exon5	c.T425C	p.L142P	.	.	82	16	73	0	T|0.992;C|0.008	136
CATSPERG	57828	bcgsc.ca	37	19	38857937	38857937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CATSPERG	NM_021185	exon23	c.T2755C	p.F919L	.	.	43	4	40	0	.	92
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219892384	219892384	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC108	NM_194302	exon13	c.C2199T	p.F733F	.	.	255	84	185	0	.	94
CCDC135	84229	hgsc.bcm.edu	37	16	57758667	57758667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC135	NM_032269	exon12	c.T1678C	p.S560P	.	.	123	7	84	0	.	90
CCDC150	284992	bcgsc.ca	37	2	197583321	197583321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001080539	exon18	c.A1961G	p.D654G	.	.	117	7	97	0	.	.
CCDC168	643677	hgsc.bcm.edu	37	13	103394092	103394092	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001146197	exon4	c.G8955A	p.E2985E	.	.	86	4	74	0	.	.
CCDC171	203238	hgsc.bcm.edu	37	9	15695299	15695299	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_173550	exon11	c.T1282C	p.L428L	.	.	95	4	96	0	.	.
CCDC66	285331	hgsc.bcm.edu	37	3	56650051	56650051	+	Missense_Mutation	SNP	A	A	T	rs74463118		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC66	NM_001141947	exon13	c.A1813T	p.T605S	.	.	99	5	96	0	.	135
CCDC88C	440193	hgsc.bcm.edu	37	14	91806281	91806281	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CCDC88C	NM_001080414	exon7	c.A571G	p.S191G	.	.	181	12	147	0	.	25
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7510070	7510070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD163L1	NM_174941	exon19	c.A4292T	p.N1431I	.	.	74	24	52	0	.	100
CD1C	911	broad.mit.edu	37	1	158261027	158261027	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD1C	NM_001765	exon2	c.T165C	p.T55T	.	.	581	9	289	0	.	94
CD207	50489	hgsc.bcm.edu	37	2	71062833	71062833	+	Splice_Site	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD207	NM_015717	exon2	c.73+1C>G	.	.	.	174	4	185	0	.	46
CD22	933	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35832037	35832037	+	Silent	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CD22	NM_001185100	exon7	c.C1503G	p.V501V	.	.	122	58	127	1	.	526
CDH18	1016	broad.mit.edu	37	5	19571852	19571852	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CDH18	NM_001167667	exon8	c.T1089C	p.P363P	.	.	414	8	271	0	.	159
CDKN2D	1032	bcgsc.ca	37	19	10678046	10678046	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CDKN2D	NM_079421	exon3	c.A189G	p.Q63Q	.	.	144	7	78	0	.	414
CEACAM20	125931	hgsc.bcm.edu	37	19	45026890	45026890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEACAM20	NM_001102600	exon4	c.A524G	p.E175G	.	.	121	6	90	0	.	67
CELA1	1990	hgsc.bcm.edu	37	12	51723604	51723604	+	Missense_Mutation	SNP	C	C	G	rs201129231		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CELA1	NM_001971	exon7	c.G623C	p.G208A	.	.	35	4	46	0	C|0.999;G|0.001	153
CELSR3	1951	hgsc.bcm.edu	37	3	48697030	48697030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CELSR3	NM_001407	exon1	c.A3038G	p.E1013G	.	.	86	4	68	0	.	523
CEP152	22995	hgsc.bcm.edu	37	15	49033896	49033896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP152	NM_001194998	exon26	c.A3995G	p.E1332G	.	.	89	4	70	0	.	70
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117222640	117222640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP164	NM_001271933	exon4	c.A329C	p.K110T	.	.	87	6	57	0	.	69
CEP290	80184	hgsc.bcm.edu	37	12	88444170	88444170	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon53	c.A7170G	p.T2390T	.	.	64	4	41	0	.	96
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88486591	88486591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP290	NM_025114	exon29	c.G3328T	p.D1110Y	.	.	177	64	176	0	.	96
CEP44	80817	hgsc.bcm.edu;bcgsc.ca	37	4	175225512	175225512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP44	NM_001040157	exon6	c.T499C	p.S167P	.	.	167	11	146	0	.	68
CEP68	23177	hgsc.bcm.edu	37	2	65296913	65296913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP68	NM_015147	exon2	c.T335C	p.L112P	.	.	57	4	54	0	.	91
CEP95	90799	hgsc.bcm.edu	37	17	62528114	62528114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CEP95	NM_138363	exon14	c.T1646C	p.L549P	.	.	80	4	57	0	.	23
CHD1L	9557	hgsc.bcm.edu	37	1	146737617	146737617	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHD1L	NM_004284	exon8	c.C766G	p.P256A	.	.	94	4	109	0	.	231
CHD7	55636	hgsc.bcm.edu	37	8	61707642	61707642	+	Missense_Mutation	SNP	C	C	T	rs200277422	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHD7	NM_017780	exon4	c.C2194T	p.P732S	.	.	79	4	57	0	C|0.998;G|0.002	141
CHDC2	286464	hgsc.bcm.edu	37	X	36156122	36156122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_173695	exon9	c.T1093C	p.S365P	.	.	91	4	98	0	.	.
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78972946	78972946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHMP6	NM_024591	exon8	c.C599G	p.A200G	.	.	128	37	95	0	.	91
CHRM2	1129	ucsc.edu;mdanderson.org	37	7	136701056	136701056	+	RNA	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CHRM2	.	.	.	.	.	.	232	54	170	0	.	94
CHUK	1147	hgsc.bcm.edu	37	10	101978562	101978562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	CHUK,NS,carcinoma,-1	CHUK	NM_001278	exon8	c.A710G	p.K237R	.	.	79	4	118	0	.	961
CIC	23152	hgsc.bcm.edu	37	19	42798458	42798458	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIC	NM_015125	exon18	c.4327+2T>C	.	.	.	69	4	71	0	.	591
CIITA	4261	hgsc.bcm.edu	37	16	10989540	10989540	+	Missense_Mutation	SNP	A	A	G	rs143732812		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIITA	NM_000246	exon3	c.A214G	p.T72A	.	.	136	6	102	0	A|1.000;G|0.000	226
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120172998	120172998	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CIT	NM_001206999	exon25	c.G3123A	p.T1041T	.	.	450	155	371	0	.	399
CLIP1	6249	hgsc.bcm.edu	37	12	122864937	122864937	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLIP1	NM_002956	exon2	c.A63G	p.T21T	.	.	74	4	51	0	.	155
CLK2P	1197	bcgsc.ca	37	7	23625006	23625006	+	RNA	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	82	5	96	0	.	.
CLN6	54982	hgsc.bcm.edu	37	15	68504129	68504129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLN6	NM_017882	exon4	c.G370A	p.A124T	.	.	96	4	95	0	.	91
CLPTM1L	81037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1331943	1331943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CLPTM1L	NM_030782	exon8	c.A947G	p.K316R	.	.	184	47	115	2	.	153
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842848	7842848	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CNTROB	NM_001037144	exon8	c.T945C	p.A315A	.	.	85	6	135	0	.	153
COBL	23242	hgsc.bcm.edu	37	7	51098573	51098573	+	Missense_Mutation	SNP	T	T	A	rs76265922	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COBL	NM_015198	exon9	c.A1440T	p.E480D	.	.	146	13	129	0	T|0.988;A|0.012	95
COG4	25839	hgsc.bcm.edu	37	16	70553593	70553593	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COG4	NM_015386	exon2	c.A213G	p.Q71Q	.	.	115	5	88	0	.	90
COL12A1	1303	hgsc.bcm.edu	37	6	75806978	75806978	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL12A1	NM_004370	exon59	c.A8568G	p.P2856P	.	.	72	4	110	0	.	142
COL12A1	1303	hgsc.bcm.edu	37	6	75864133	75864133	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL12A1	NM_004370	exon17	c.T3564C	p.S1188S	.	.	95	4	87	0	.	142
COL17A1	1308	hgsc.bcm.edu	37	10	105830329	105830329	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL17A1	NM_000494	exon10	c.464-2A>G	.	.	.	43	4	58	0	.	95
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117015214	117015214	+	Splice_Site	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL27A1	NM_032888	exon27	c.3141+2T>A	.	.	.	166	58	128	0	.	94
COL4A3	1285	broad.mit.edu;bcgsc.ca	37	2	228163506	228163506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL4A3	NM_000091	exon43	c.A3860G	p.D1287G	.	.	182	6	154	0	.	132
COL5A2	1290	hgsc.bcm.edu	37	2	189922082	189922082	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL5A2	NM_000393	exon34	c.A2301G	p.R767R	.	.	90	4	86	0	.	92
COL6A3	1293	hgsc.bcm.edu	37	2	238244877	238244877	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	COL6A3	NM_004369	exon40	c.G8866C	p.A2956P	.	.	46	4	40	0	.	526
CPD	1362	hgsc.bcm.edu;bcgsc.ca	37	17	28770949	28770949	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CPD	NM_001304	exon11	c.T2503C	p.L835L	.	.	90	5	61	0	.	92
CRB2	286204	hgsc.bcm.edu	37	9	126139301	126139301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CRB2	NM_173689	exon13	c.A3818G	p.D1273G	.	.	137	6	142	0	.	91
CREB3L2	64764	hgsc.bcm.edu	37	7	137612916	137612916	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CREB3L2	NM_001253775	exon2	c.C299G	p.T100S	.	.	474	10	255	0	.	92
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457625	51457625	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1536T	p.T512T	.	.	152	71	154	0	.	90
CSRNP2	81566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51457641	51457641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CSRNP2	NM_030809	exon5	c.G1520T	p.S507I	.	.	169	76	166	0	.	90
CST5	1473	hgsc.bcm.edu	37	20	23860229	23860229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CST5	NM_001900	exon1	c.A85G	p.T29A	.	.	99	4	63	0	.	90
CXCR5	643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118764607	118764607	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CXCR5	NM_001716	exon2	c.G354A	p.G118G	.	.	177	42	173	0	.	721
CYGB	114757	hgsc.bcm.edu;bcgsc.ca	37	17	74527573	74527573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	CYGB	NM_134268	exon2	c.T344C	p.L115P	.	.	119	5	57	0	.	90
DAO	1610	hgsc.bcm.edu	37	12	109288106	109288106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DAO	NM_001917	exon7	c.A575G	p.D192G	.	.	92	4	98	0	.	92
DCAF15	90379	hgsc.bcm.edu	37	19	14071164	14071164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DCAF15	NM_138353	exon11	c.T1592C	p.V531A	.	.	85	4	115	0	.	90
DCP2	167227	bcgsc.ca	37	5	112346458	112346458	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DCP2	NM_152624	exon10	c.T1053C	p.C351C	.	.	41	4	39	0	.	90
DDN	23109	hgsc.bcm.edu	37	12	49391026	49391026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDN	NM_015086	exon2	c.A1633G	p.T545A	.	.	49	4	68	0	.	90
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70694063	70694063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DDX50	NM_024045	exon9	c.C1348T	p.R450C	.	.	66	24	52	0	.	91
DEF8	54849	bcgsc.ca	37	16	90028226	90028226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DEF8	NM_207514	exon8	c.T944C	p.V315A	.	.	55	4	50	0	.	68
DENND4B	9909	hgsc.bcm.edu	37	1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C	rs199597671		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DENND4B	NM_014856	exon18	c.C2722G	p.Q908E	.	.	171	48	73	0	.	69
DENND4B	9909	hgsc.bcm.edu	37	1	153907315	153907315	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DENND4B	NM_014856	exon18	c.G2694A	p.Q898Q	.	.	182	14	86	0	.	69
DENND4B	9909	mdanderson.org	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	.	.	177	65	79	0	.	69
DEPDC1	55635	bcgsc.ca	37	1	68948582	68948582	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DEPDC1	NM_001114120	exon9	c.911-2A>G	.	.	.	102	4	74	0	.	90
DFFB	1677	hgsc.bcm.edu	37	1	3775365	3775365	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DFFB	NM_004402	exon2	c.C198T	p.N66N	.	.	94	4	104	0	.	91
DGCR2	9993	bcgsc.ca	37	22	19052386	19052386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DGCR2	NM_005137	exon4	c.A523G	p.S175G	.	.	76	5	32	0	.	90
DHRS4L1	728635	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	24517998	24517998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001082488	exon8	c.T653C	p.I218T	.	.	875	334	674	0	.	.
DHRSX	207063	broad.mit.edu;bcgsc.ca	37	X	2139146	2139146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_145177	exon7	c.A929T	p.K310I	.	.	678	14	472	0	.	.
DHX30	22907	hgsc.bcm.edu	37	3	47882442	47882442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DHX30	NM_138615	exon7	c.T442C	p.S148P	.	.	161	8	112	0	.	228
DMD	1756	hgsc.bcm.edu;bcgsc.ca	37	X	31497178	31497178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DMD	NM_004006	exon58	c.A8590G	p.S2864G	.	.	93	4	72	0	.	265
DNAH17	8632	hgsc.bcm.edu	37	17	76464900	76464900	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH17	NM_173628	exon55	c.A8577G	p.T2859T	.	.	111	5	62	0	.	142
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721766	7721766	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH2	NM_020877	exon68	c.T10524C	p.A3508A	.	.	57	33	80	0	.	102
DNAH3	55567	hgsc.bcm.edu	37	16	21139101	21139101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH3	NM_017539	exon8	c.A1115G	p.E372G	.	.	89	4	58	0	.	167
DNAH6	1768	bcgsc.ca	37	2	84945446	84945446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAH6	NM_001370	exon59	c.T9730C	p.F3244L	.	.	146	5	103	0	.	69
DNAJC3	5611	bcgsc.ca	37	13	96377449	96377449	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DNAJC3	NM_006260	exon4	c.T336C	p.G112G	.	.	232	8	195	0	.	226
DOCK1	1793	ucsc.edu;bcgsc.ca	37	10	128835998	128835998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DOCK1	NM_001380	exon19	c.T1865C	p.L622P	.	.	46	4	78	0	.	698
DRD3	1814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113850192	113850192	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DRD3	NM_033663	exon6	c.A779C	p.Q260P	.	.	195	67	120	0	.	93
DSG4	147409	hgsc.bcm.edu	37	18	28971041	28971041	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DSG4	NM_001134453	exon7	c.C685T	p.Q229X	.	.	83	4	84	0	.	177
DST	667	hgsc.bcm.edu	37	6	56443682	56443682	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DST	NM_015548	exon31	c.A5088G	p.K1696K	.	.	118	5	85	0	.	523
DUPD1	338599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	76818256	76818256	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUPD1	NM_001003892	exon1	c.T17A	p.V6E	.	.	79	23	53	0	.	92
DUSP13	51207	hgsc.bcm.edu	37	10	76868819	76868819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	DUSP13	NM_001007272	exon1	c.T97C	p.S33P	.	.	84	4	64	0	.	226
EEF1A1	1915	bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EEF1A1	NM_001402	exon7	c.T1077G	p.P359P	.	.	88	6	115	1	C|1.000;|0.000	226
EIF4G2	1982	hgsc.bcm.edu;bcgsc.ca	37	11	10824623	10824623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EIF4G2	NM_001042559	exon11	c.A950G	p.D317G	.	.	125	5	99	0	.	91
EP400	57634	hgsc.bcm.edu;bcgsc.ca	37	12	132527997	132527997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EP400	NM_015409	exon33	c.T6356C	p.F2119S	.	.	82	4	82	0	.	520
EPHB2	2048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23232489	23232489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPHB2	NM_004442	exon10	c.G1778T	p.G593V	.	.	89	38	99	0	.	1381
EPN2	22905	hgsc.bcm.edu	37	17	19186829	19186873	+	In_Frame_Del	DEL	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	CTCCTCAAGGACGAGGAACGGTTGAAGGCTGAGAGGGCCCAGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EPN2	NM_148921	exon3	c.397_441del	p.133_147del	.	.	56	0	98	0	.	91
ERAP2	64167	hgsc.bcm.edu	37	5	96215717	96215717	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERAP2	NM_001130140	exon2	c.T328C	p.L110L	.	.	100	4	125	0	.	68
ERCC6L	54821	hgsc.bcm.edu	37	X	71426725	71426725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERCC6L	NM_017669	exon2	c.A1892G	p.E631G	.	.	83	6	82	0	.	93
ERI3	79033	hgsc.bcm.edu	37	1	44778868	44778868	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ERI3	NM_024066	exon5	c.T639C	p.G213G	.	.	154	7	126	0	.	92
EVX1	2128	broad.mit.edu;mdanderson.org	37	7	27285622	27285622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EVX1	NM_001989	exon3	c.G802C	p.G268R	.	.	11	6	31	0	.	91
EVX1	2128	hgsc.bcm.edu	37	7	27285511	27285511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EVX1	NM_001989	exon3	c.T691C	p.F231L	.	.	100	4	113	0	.	91
EXOC3L4	91828	broad.mit.edu	37	14	103570622	103570622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EXOC3L4	NM_001077594	exon4	c.T1180C	p.F394L	.	.	184	4	170	0	.	23
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575571	28575571	+	Silent	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	EXTL3	NM_001440	exon3	c.G1995T	p.V665V	.	.	165	94	222	1	.	92
F3	2152	hgsc.bcm.edu;bcgsc.ca	37	1	95001634	95001634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F3	NM_001993	exon3	c.A299G	p.K100R	.	.	121	5	108	0	.	90
F5	2153	hgsc.bcm.edu	37	1	169555549	169555549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	F5	NM_000130	exon1	c.A76G	p.T26A	.	.	220	10	96	0	.	157
FADS3	3995	hgsc.bcm.edu	37	11	61641336	61641336	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FADS3	NM_021727	exon12	c.T1288C	p.S430P	.	.	242	10	132	0	.	46
FAM157B	100132403	ucsc.edu;bcgsc.ca	37	9	141107526	141107526	+	Missense_Mutation	SNP	C	C	T	rs7457501	bycluster;by2hit2allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001145249	exon2	c.C208T	p.R70W	.	.	285	75	171	3	C|1.000;|0.000	.
FAM157B	100132403	ucsc.edu;bcgsc.ca	37	9	141107533	141107533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001145249	exon2	c.G215A	p.R72Q	.	.	252	76	165	1	.	.
FAM157B	100132403	ucsc.edu;bcgsc.ca	37	9	141107536	141107536	+	Missense_Mutation	SNP	G	G	A	rs62429398		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001145249	exon2	c.G218A	p.R73Q	.	.	244	16	158	1	.	.
FAM168A	23201	hgsc.bcm.edu	37	11	73179515	73179515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM168A	NM_015159	exon2	c.A5G	p.N2S	.	.	74	4	69	0	.	68
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	56	10	40	0	.	.
FAM73A	374986	hgsc.bcm.edu	37	1	78309009	78309009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM73A	NM_001270384	exon8	c.A913G	p.T305A	.	.	63	4	47	0	.	91
FAM98B	283742	hgsc.bcm.edu	37	15	38776827	38776827	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM98B	NM_173611	exon8	c.T1269A	p.G423G	.	.	68	10	70	0	.	515
FAM98B	283742	hgsc.bcm.edu	37	15	38776830	38776830	+	Silent	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAM98B	NM_173611	exon8	c.T1272A	p.G424G	.	.	65	7	69	0	.	515
FAS	355	hgsc.bcm.edu	37	10	90762898	90762898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAS	NM_152872	exon2	c.A143G	p.N48S	.	.	72	4	109	0	.	847
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150908876	150908876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FAT2	NM_001447	exon14	c.A9889G	p.S3297G	.	.	122	44	106	0	.	96
FBXO3	26273	hgsc.bcm.edu	37	11	33770421	33770421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO3	NM_012175	exon9	c.A950G	p.D317G	.	.	88	4	72	0	.	227
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147807217	147807217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FBXO38	NM_030793	exon15	c.G2360A	p.R787K	.	.	100	33	82	0	.	231
FERD3L	222894	hgsc.bcm.edu	37	7	19184746	19184746	+	Silent	SNP	C	C	T	rs199985178		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FERD3L	NM_152898	exon1	c.G240A	p.E80E	.	.	50	5	38	0	.	153
FERD3L	222894	hgsc.bcm.edu	37	7	19184752	19184752	+	Silent	SNP	C	C	T	rs73079402		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FERD3L	NM_152898	exon1	c.G234A	p.E78E	.	.	47	5	39	0	C|1.000;T|0.000	153
FGFR1	2260	hgsc.bcm.edu	37	8	38285912	38285912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FGFR1	NM_001174067	exon5	c.T499C	p.S167P	.	.	84	4	123	0	.	1793
FHDC1	85462	hgsc.bcm.edu	37	4	153864458	153864458	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FHDC1	NM_033393	exon1	c.T249C	p.T83T	.	.	108	5	96	0	.	136
FKBP8	23770	hgsc.bcm.edu	37	19	18649200	18649200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FKBP8	NM_012181	exon5	c.A598G	p.T200A	.	.	113	5	118	0	.	227
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180036905	180036905	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FLT4	NM_182925	exon28	c.G3807T	p.V1269V	.	.	124	49	109	0	.	1490
FN1	2335	hgsc.bcm.edu	37	2	216239959	216239959	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FN1	NM_212482	exon38	c.T6135C	p.G2045G	.	.	116	5	110	0	.	584
FNTA	2339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	42939883	42939883	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FNTA	NM_002027	exon8	c.T876C	p.Y292Y	.	.	104	6	89	0	.	91
FOXR2	139628	bcgsc.ca	37	X	55650210	55650210	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FOXR2	NM_198451	exon1	c.G66A	p.L22L	.	.	106	4	78	0	.	227
FOXR2	139628	hgsc.bcm.edu	37	X	55650773	55650773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FOXR2	NM_198451	exon1	c.A629G	p.H210R	.	.	86	4	59	0	.	227
FPGS	2356	hgsc.bcm.edu	37	9	130573285	130573285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FPGS	NM_004957	exon14	c.A1349G	p.N450S	.	.	62	4	46	0	.	90
FRAS1	80144	hgsc.bcm.edu	37	4	79367953	79367953	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FRAS1	NM_025074	exon43	c.A5929C	p.S1977R	.	.	125	5	108	0	.	68
FREM1	158326	broad.mit.edu	37	9	14842559	14842559	+	Missense_Mutation	SNP	C	C	T	rs184394424		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FREM1	NM_144966	exon10	c.G1493A	p.R498Q	.	.	86	4	45	0	C|0.999;T|0.000	138
FRG1B	284802	broad.mit.edu	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FRG1B	.	.	.	.	.	.	362	8	326	1	.	22
FST	10468	bcgsc.ca	37	5	52780882	52780882	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FST	NM_013409	exon5	c.T777C	p.D259D	.	.	216	6	182	0	.	90
FZR1	51343	hgsc.bcm.edu	37	19	3530851	3530851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	FZR1	NM_001136198	exon7	c.A716G	p.E239G	.	.	87	4	67	0	.	227
G6PC	2538	bcgsc.ca	37	17	41063391	41063391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	G6PC	NM_000151	exon5	c.T1022C	p.I341T	.	.	83	8	95	1	.	292
G6PD	2539	hgsc.bcm.edu	37	X	153774307	153774307	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	G6PD	NM_000402	exon2	c.C154T	p.Q52X	.	.	60	4	33	0	.	135
GABRB3	2562	hgsc.bcm.edu	37	15	26828551	26828551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GABRB3	NM_021912	exon5	c.A472G	p.T158A	.	.	78	4	93	0	.	518
GALNT6	11226	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51748219	51748219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GALNT6	NM_007210	exon12	c.C1813A	p.P605T	.	.	210	23	159	1	.	92
GAS2L2	246176	hgsc.bcm.edu;bcgsc.ca	37	17	34073039	34073039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GAS2L2	NM_139285	exon6	c.T1477C	p.S493P	.	.	77	4	53	0	.	227
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	.	.	84	16	76	0	A|0.963;T|0.037	90
GIMAP8	155038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150171348	150171348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GIMAP8	NM_175571	exon4	c.A931G	p.N311D	.	.	126	31	63	0	.	95
GIT1	28964	bcgsc.ca	37	17	27902427	27902427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GIT1	NM_001085454	exon19	c.A1915G	p.S639G	.	.	129	5	112	0	.	251
GLDC	2731	hgsc.bcm.edu;bcgsc.ca	37	9	6554742	6554742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GLDC	NM_000170	exon19	c.T2242C	p.S748P	.	.	74	5	52	0	.	92
GMEB1	10691	hgsc.bcm.edu;bcgsc.ca	37	1	29040628	29040628	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GMEB1	NM_006582	exon10	c.T1065C	p.D355D	.	.	89	4	88	0	.	90
GOLGA4	2803	hgsc.bcm.edu	37	3	37367411	37367411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GOLGA4	NM_001172713	exon15	c.A4100G	p.K1367R	.	.	75	3	54	0	.	93
GPR111	222611	hgsc.bcm.edu	37	6	47649351	47649351	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPR111	NM_153839	exon7	c.A852G	p.E284E	.	.	96	4	71	0	.	91
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89954088	89954088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPR98	NM_032119	exon21	c.T4745C	p.I1582T	.	.	189	73	165	0	.	103
GPRIN3	285513	hgsc.bcm.edu	37	4	90170576	90170576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GPRIN3	NM_198281	exon2	c.A686G	p.D229G	.	.	78	4	65	0	.	71
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	.	.	133	15	67	0	.	134
GRM8	2918	hgsc.bcm.edu	37	7	126079220	126079220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	GRM8	NM_000845	exon10	c.T2680C	p.S894P	.	.	63	4	50	0	.	581
GSE1	23199	hgsc.bcm.edu	37	16	85687787	85687901	+	In_Frame_Del	DEL	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	ATCTAGCGCCTTCCCGTGAGTCAGGAGACCTGGCTGTGTCCTGTGGTCAGTGGCCTATACCAGGCTCCTGCCCTGACTGGACGCTCTCCTCCCGCAGGATGCCGGCTCCAGGAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_014615	exon4	c.427_444del	p.143_148del	.	.	38	0	25	0	.	.
HCFC1	3054	hgsc.bcm.edu	37	X	153230097	153230097	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HCFC1	NM_005334	exon2	c.A274G	p.T92A	.	.	250	11	97	0	.	132
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	236749177	236749177	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEATR1	NM_018072	exon16	c.G1992C	p.M664I	.	.	274	17	149	0	.	93
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65105654	65105654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HELZ	NM_014877	exon29	c.C4067T	p.P1356L	.	.	501	131	305	0	.	92
HEY2	23493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126080600	126080600	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HEY2	NM_012259	exon5	c.C666T	p.H222H	.	.	48	32	80	0	.	658
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	30458995	30458995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HLA-E	NM_005516	exon4	c.C692G	p.P231R	.	.	166	58	130	0	.	516
HNRNPCL1	343069	bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	.	.	127	9	171	2	.	68
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41800283	41800283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HNRNPUL1	NM_007040	exon9	c.C1307A	p.T436K	.	.	235	82	190	0	.	69
HOMEZ	57594	hgsc.bcm.edu	37	14	23744844	23744844	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOMEZ	NM_020834	exon2	c.G1593A	p.E531E	.	.	105	18	86	0	.	22
HOMEZ	57594	hgsc.bcm.edu	37	14	23744847	23744847	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOMEZ	NM_020834	exon2	c.A1590G	p.E530E	.	.	102	12	87	0	.	22
HOXA11	3207	hgsc.bcm.edu	37	7	27224736	27224736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOXA11	NM_005523	exon1	c.T28C	p.S10P	.	.	95	4	45	0	.	1082
HOXA6	3203	bcgsc.ca	37	7	27187271	27187271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOXA6	NM_024014	exon1	c.A98G	p.D33G	.	.	54	6	56	0	.	91
HOXC4	3221	ucsc.edu	37	12	54447662	54447662	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HOXC4	.	.	.	.	.	.	64	22	54	0	.	91
HPSE2	60495	hgsc.bcm.edu;bcgsc.ca	37	10	100904083	100904083	+	Silent	SNP	C	C	T	rs200038077		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HPSE2	NM_001166246	exon3	c.G522A	p.L174L	.	.	62	4	69	0	C|0.999;T|0.001	91
HRC	3270	hgsc.bcm.edu	37	19	49657886	49657886	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HRC	NM_002152	exon1	c.G609A	p.E203E	.	.	158	10	137	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657889	49657889	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HRC	NM_002152	exon1	c.A606G	p.E202E	.	.	154	11	140	0	.	91
HRC	3270	hgsc.bcm.edu	37	19	49657916	49657916	+	Silent	SNP	T	T	C	rs7409255		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HRC	NM_002152	exon1	c.A579G	p.E193E	.	.	173	16	129	0	.	91
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20823705	20823705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS1BP3	NM_022460	exon6	c.G871T	p.G291W	.	.	103	33	84	0	.	91
HS3ST2	9956	hgsc.bcm.edu	37	16	22926369	22926369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HS3ST2	NM_006043	exon2	c.A590G	p.D197G	.	.	81	4	89	0	.	516
HSDL2	84263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	115232768	115232768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSDL2	NM_032303	exon11	c.A1201G	p.M401V	.	.	42	4	54	0	.	90
HSPA4L	22824	hgsc.bcm.edu;bcgsc.ca	37	4	128724944	128724944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HSPA4L	NM_014278	exon7	c.A824G	p.K275R	.	.	99	4	111	0	.	228
HTR3A	3359	broad.mit.edu	37	11	113857609	113857609	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HTR3A	NM_213621	exon7	c.G1093C	p.V365L	.	.	223	5	196	0	.	90
HYDIN	54768	hgsc.bcm.edu;bcgsc.ca	37	16	70884467	70884467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	HYDIN	NM_001270974	exon74	c.A12535G	p.T4179A	.	.	212	38	149	0	.	92
ID1	3397	hgsc.bcm.edu	37	20	30193564	30193564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ID1	NM_002165	exon1	c.T374C	p.V125A	.	.	108	5	121	0	.	651
IDO2	169355	hgsc.bcm.edu	37	8	39840206	39840206	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IDO2	NM_194294	exon5	c.A390G	p.E130E	.	.	69	5	85	0	.	24
IFI16	3428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158988074	158988074	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFI16	NM_005531	exon5	c.A605T	p.K202I	.	.	364	120	128	0	.	91
IFITM10	402778	hgsc.bcm.edu	37	11	1756545	1756545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001170820	exon3	c.T652C	p.F218L	.	.	82	5	63	0	.	.
IFNA6	3443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21350645	21350645	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IFNA6	NM_021002	exon1	c.A242C	p.H81P	.	.	239	110	193	0	.	68
IGLON5	402665	mdanderson.org	37	19	51830442	51830442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001101372	exon6	c.A755G	p.K252R	.	.	19	3	42	0	.	.
IGSF3	3321	hgsc.bcm.edu	37	1	117122269	117122269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IGSF3	NM_001542	exon11	c.C3139G	p.P1047A	.	.	89	5	93	0	.	92
IGSF5	150084	bcgsc.ca	37	21	41137660	41137660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IGSF5	NM_001080444	exon3	c.A299G	p.Q100R	.	.	146	5	126	1	.	68
IL1RAPL2	26280	hgsc.bcm.edu	37	X	104728324	104728324	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL1RAPL2	NM_017416	exon6	c.T717C	p.P239P	.	.	431	22	180	0	.	194
IL2RA	3559	bcgsc.ca	37	10	6061863	6061863	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL2RA	NM_000417	exon5	c.A625G	p.S209G	.	.	159	6	129	1	.	92
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55206415	55206415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IL31RA	NM_001242637	exon12	c.G1557T	p.K519N	.	.	267	105	233	0	.	91
INSIG1	3638	hgsc.bcm.edu;bcgsc.ca	37	7	155090257	155090257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	INSIG1	NM_198337	exon2	c.A262G	p.S88G	.	.	77	4	59	0	.	90
IP6K3	117283	hgsc.bcm.edu;bcgsc.ca	37	6	33696059	33696059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IP6K3	NM_001142883	exon4	c.T218C	p.L73P	.	.	113	6	89	0	.	240
IQGAP1	8826	hgsc.bcm.edu	37	15	91043300	91043300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IQGAP1	NM_003870	exon38	c.T4934C	p.L1645P	.	.	96	5	94	0	.	950
IRF1	3659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131825125	131825125	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IRF1	NM_002198	exon2	c.A46C	p.I16L	.	.	128	41	114	0	.	226
IRF6	3664	bcgsc.ca	37	1	209969698	209969698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	IRF6	NM_006147	exon4	c.A374G	p.N125S	.	.	219	6	71	0	.	92
ITGA11	22801	hgsc.bcm.edu	37	15	68620599	68620599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA11	NM_001004439	exon16	c.T1903C	p.S635P	.	.	130	8	92	0	.	538
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52356813	52356813	+	Silent	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGA2	NM_002203	exon12	c.A1395T	p.I465I	.	.	194	73	189	0	.	226
ITGB4	3691	hgsc.bcm.edu	37	17	73729645	73729645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB4	NM_001005731	exon13	c.A1529G	p.K510R	.	.	96	4	52	0	.	227
ITGB5	3693	hgsc.bcm.edu	37	3	124515576	124515576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB5	NM_002213	exon10	c.A1352G	p.D451G	.	.	106	6	119	0	.	227
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	20438493	20438493	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ITGB8	NM_002214	exon9	c.C1157A	p.S386X	.	.	159	60	127	0	.	227
JMJD4	65094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	227922402	227922402	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	JMJD4	NM_023007	exon2	c.C516T	p.G172G	.	.	562	285	287	0	.	226
KAT6B	23522	hgsc.bcm.edu;bcgsc.ca	37	10	76741556	76741556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_012330	exon11	c.T2243C	p.L748P	.	.	76	4	52	0	.	.
KCNAB1	7881	hgsc.bcm.edu	37	3	156183439	156183439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KCNAB1	NM_172160	exon7	c.A535G	p.T179A	.	.	100	4	86	0	.	94
KCNK6	9424	hgsc.bcm.edu	37	19	38817935	38817935	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KCNK6	NM_004823	exon3	c.T834C	p.S278S	.	.	114	6	94	0	.	91
KDM4D	55693	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	94732090	94732104	+	In_Frame_Del	DEL	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CTGGGCCCCTGTGCC	CTGGGCCCCTGTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM4D	NM_018039	exon3	c.1554_1568del	p.518_523del	.	.	135	20	126	0	.	226
KDM5C	8242	hgsc.bcm.edu	37	X	53226132	53226132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KDM5C	NM_004187	exon19	c.A2717G	p.E906G	.	.	76	6	68	0	.	1272
KIAA0319L	79932	hgsc.bcm.edu	37	1	35928258	35928258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA0319L	NM_024874	exon8	c.T1258C	p.S420P	.	.	63	4	54	0	.	92
KIAA1210	57481	hgsc.bcm.edu;bcgsc.ca	37	X	118221124	118221124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIAA1210	NM_020721	exon11	c.A4069G	p.K1357E	.	.	92	4	43	0	.	67
KIAA1257	57501	hgsc.bcm.edu	37	3	128694728	128694728	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_020741	exon7	c.A915G	p.T305T	.	.	90	4	64	0	.	.
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32136525	32136525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_018169	exon4	c.C2636T	p.S879L	.	.	170	47	137	0	.	.
KIF2A	3796	hgsc.bcm.edu;bcgsc.ca	37	5	61659121	61659121	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF2A	NM_001098511	exon13	c.A1236G	p.K412K	.	.	92	6	45	0	.	228
KIF5A	3798	hgsc.bcm.edu	37	12	57966045	57966045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KIF5A	NM_004984	exon14	c.A1564G	p.K522E	.	.	93	4	93	0	.	517
KNTC1	9735	bcgsc.ca	37	12	123031193	123031193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KNTC1	NM_014708	exon10	c.A788G	p.D263G	.	.	148	5	111	0	.	543
KRT17	3872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39778675	39778675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRT17	NM_000422	exon3	c.G604T	p.A202S	.	.	608	224	438	0	.	92
KRT36	8689	bcgsc.ca	37	17	39646029	39646029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRT36	NM_003771	exon1	c.T88C	p.S30P	.	.	131	9	102	1	.	90
KRTAP1-4	728255	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39186236	39186236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001257305	exon1	c.C95A	p.T32N	.	.	101	46	69	0	.	.
KRTAP9-2	83899	hgsc.bcm.edu	37	17	39383332	39383332	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KRTAP9-2	NM_031961	exon1	c.G426C	p.Q142H	.	.	274	16	219	0	.	23
KSR1	8844	hgsc.bcm.edu	37	17	25932752	25932752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	KSR1	NM_014238	exon15	c.T1562C	p.V521A	.	.	147	8	110	0	.	964
LACC1	144811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	44455558	44455558	+	Missense_Mutation	SNP	C	C	A	rs150202700		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001128303	exon2	c.C437A	p.S146Y	.	.	76	25	76	0	C|1.000;A|0.000	.
LATS2	26524	hgsc.bcm.edu	37	13	21555755	21555755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LATS2	NM_014572	exon6	c.A2515G	p.S839G	.	.	89	3	98	0	.	1404
LCA5L	150082	mdanderson.org	37	21	40777864	40777864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LCA5L	NM_152505	exon10	c.G1957A	p.V653I	.	.	28	3	32	0	.	22
LOC100132247	0	bcgsc.ca	37	16	22545897	22545897	+	Missense_Mutation	SNP	G	G	T	rs143579045		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001135865	exon7	c.G1593T	p.K531N	.	.	56	8	50	4	.	.
LOC400891	0	broad.mit.edu	37	22	21403327	21403327	+	RNA	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	333	48	196	2	.	.
LOC442028	0	ucsc.edu	37	2	95539168	95539168	+	RNA	SNP	G	G	C	rs72942209		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	82	10	65	6	.	.
LOC642852	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46713386	46713386	+	RNA	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	91	29	89	0	.	.
LOC645752	0	broad.mit.edu	37	15	78211470	78211470	+	RNA	SNP	T	T	A	rs200829951	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	330	121	234	0	T|0.998;C|0.002	.
LOXL1	4016	ucsc.edu	37	15	74219024	74219024	+	RNA	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LOXL1	.	.	.	.	.	.	29	9	20	0	.	226
LRFN5	145581	hgsc.bcm.edu	37	14	42357029	42357029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRFN5	NM_152447	exon3	c.A1201G	p.T401A	.	.	92	4	62	0	.	97
LRP1	4035	hgsc.bcm.edu	37	12	57569808	57569808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1	NM_002332	exon24	c.T3910C	p.F1304L	.	.	117	7	106	0	.	596
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141819744	141819744	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRP1B	NM_018557	exon8	c.A1112C	p.Q371P	.	.	173	62	163	0	.	311
LRRC16B	90668	hgsc.bcm.edu	37	14	24523470	24523470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRRC16B	NM_138360	exon4	c.T206C	p.V69A	.	.	94	4	61	0	.	139
LRRC3	81543	hgsc.bcm.edu	37	21	45877204	45877204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRRC3	NM_030891	exon2	c.T677C	p.V226A	.	.	77	5	84	0	.	90
LRRN4CL	221091	mdanderson.org	37	11	62455894	62455894	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LRRN4CL	NM_203422	exon2	c.A87G	p.E29E	.	.	15	3	18	0	.	90
LURAP1L	286343	mdanderson.org	37	9	12775864	12775864	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_203403	exon1	c.C150T	p.G50G	.	.	28	14	33	0	.	.
LY75	4065	hgsc.bcm.edu	37	2	160676430	160676430	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	LY75	NM_002349	exon29	c.T3960C	p.N1320N	.	.	98	4	64	0	.	90
MAML2	84441	mdanderson.org	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MAML2	NM_032427	exon2	c.G1812A	p.Q604Q	.	.	133	25	123	0	C|0.500;T|0.500	850
MAS1L	116511	hgsc.bcm.edu	37	6	29454972	29454972	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MAS1L	NM_052967	exon1	c.A708G	p.S236S	.	.	83	4	53	0	.	527
MB21D2	151963	bcgsc.ca	37	3	192516935	192516935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MB21D2	NM_178496	exon2	c.T716C	p.V239A	.	.	219	6	145	0	.	70
MCL1	4170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150551951	150551951	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MCL1	NM_182763	exon1	c.C56T	p.A19V	.	.	138	33	82	0	.	227
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30679231	30679231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDC1	NM_014641	exon7	c.C2179T	p.P727S	.	.	228	83	184	0	.	273
MDN1	23195	hgsc.bcm.edu	37	6	90411385	90411385	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MDN1	NM_014611	exon55	c.A8319G	p.E2773E	.	.	46	4	59	0	.	100
MEF2A	4205	hgsc.bcm.edu	37	15	100211761	100211761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEF2A	NM_005587	exon5	c.C295T	p.P99S	.	.	92	10	69	0	.	455
MEF2A	4205	hgsc.bcm.edu	37	15	100211780	100211780	+	Missense_Mutation	SNP	A	A	G	rs201205600		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEF2A	NM_005587	exon5	c.A314G	p.Y105C	.	.	65	10	48	0	.	455
MEF2A	4205	hgsc.bcm.edu	37	15	100211794	100211794	+	Missense_Mutation	SNP	C	C	T	rs75248193		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEF2A	NM_005587	exon5	c.C328T	p.H110Y	.	.	53	10	35	0	.	455
MEF2A	4205	mdanderson.org	37	15	100252748	100252748	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEF2A	NM_005587	exon11	c.G1272A	p.P424P	.	.	25	5	48	1	.	455
MEGF8	1954	hgsc.bcm.edu	37	19	42855634	42855634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MEGF8	NM_001271938	exon17	c.A2909G	p.Q970R	.	.	81	4	76	0	.	23
MFAP2	4237	broad.mit.edu	37	1	17303261	17303261	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MFAP2	NM_002403	exon5	c.G183A	p.Q61Q	.	.	244	7	199	0	.	514
MFSD1	64747	hgsc.bcm.edu;bcgsc.ca	37	3	158527010	158527010	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MFSD1	NM_022736	exon6	c.T630C	p.A210A	.	.	74	4	58	0	.	90
MITF	4286	broad.mit.edu	37	3	69988321	69988321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MITF	NM_198159	exon4	c.T655C	p.S219P	.	.	172	6	144	0	.	524
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69813025	69813025	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MITF	NM_006722	exon1	c.C33T	p.F11F	.	.	94	37	81	0	.	524
MLL3	58508	bcgsc.ca	37	7	151932965	151932965	+	Silent	SNP	C	C	T	rs78472109		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLL3	NM_170606	exon16	c.G2706A	p.S902S	.	.	200	20	148	5	.	1398
MLL	4297	hgsc.bcm.edu	37	11	118368716	118368716	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLL	NM_001197104	exon21	c.A5730G	p.S1910S	.	.	95	4	93	0	.	1255
MLL4	8085	hgsc.bcm.edu	37	19	36229022	36229022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLL4	NM_014727	exon36	c.T7802C	p.V2601A	.	.	100	6	68	0	.	697
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLLT3	NM_004529	exon5	c.T501C	p.S167S	.	.	47	5	51	1	.	660
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20414041	20414041	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLLT3	NM_004529	exon5	c.A803G	p.N268S	.	.	451	179	439	1	.	660
MLXIPL	51085	hgsc.bcm.edu	37	7	73010987	73010987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MLXIPL	NM_032954	exon11	c.T1804C	p.S602P	.	.	129	6	85	0	.	91
MME	4311	broad.mit.edu;bcgsc.ca	37	3	154861272	154861272	+	Missense_Mutation	SNP	G	G	C	rs201238171	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MME	NM_007287	exon13	c.G1229C	p.R410P	.	.	150	7	204	1	.	516
MMP13	4322	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102826137	102826137	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MMP13	NM_002427	exon2	c.G206A	p.R69Q	.	.	220	84	134	2	.	229
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31333805	31333805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MORC2	NM_014941	exon15	c.A1180G	p.I394V	.	.	228	110	140	0	.	92
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58979671	58979671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPEG1	NM_001039396	exon1	c.C668T	p.A223V	.	.	49	21	44	0	.	70
MPP3	4356	hgsc.bcm.edu	37	17	41907094	41907094	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MPP3	NM_001932	exon7	c.T369C	p.P123P	.	.	96	4	84	0	.	91
MTF2	22823	hgsc.bcm.edu	37	1	93575851	93575851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTF2	NM_001164392	exon2	c.A70G	p.T24A	.	.	140	8	120	0	.	92
MTMR9	66036	hgsc.bcm.edu	37	8	11174246	11174246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTMR9	NM_015458	exon8	c.A1178G	p.E393G	.	.	139	6	191	0	.	226
MTR	4548	hgsc.bcm.edu	37	1	237038042	237038042	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MTR	NM_000254	exon24	c.A2490G	p.S830S	.	.	75	4	31	0	.	92
MUC4	4585	broad.mit.edu	37	3	195509566	195509566	+	Missense_Mutation	SNP	G	G	T	rs200444826	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MUC4	NM_018406	exon2	c.C8885A	p.P2962H	.	.	167	11	125	0	G|0.992;T|0.008	90
MUC4	4585	hgsc.bcm.edu	37	3	195513683	195513683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MUC4	NM_018406	exon2	c.A4768G	p.T1590A	.	.	193	9	157	0	.	90
MUM1	84939	hgsc.bcm.edu	37	19	1362334	1362334	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MUM1	NM_032853	exon6	c.A1200G	p.R400R	.	.	95	5	80	0	.	90
MYCL1	4610	hgsc.bcm.edu	37	1	40363211	40363211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYCL1	NM_001033082	exon3	c.A1018G	p.T340A	.	.	107	5	101	0	.	847
MYLK2	85366	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30409394	30409394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYLK2	NM_033118	exon4	c.A626G	p.E209G	.	.	182	70	150	1	.	760
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16783454	16783454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO10	NM_012334	exon5	c.C592A	p.L198I	.	.	105	20	54	0	.	3
MYO3A	53904	hgsc.bcm.edu	37	10	26443748	26443748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO3A	NM_017433	exon25	c.T2789C	p.F930S	.	.	90	4	68	0	.	1007
MYO5B	4645	hgsc.bcm.edu	37	18	47405425	47405425	+	Missense_Mutation	SNP	T	T	G	rs200219597		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO5B	NM_001080467	exon24	c.A3166C	p.M1056L	.	.	175	1	161	0	.	72
MYO7A	4647	hgsc.bcm.edu	37	11	76858854	76858854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO7A	NM_001127179	exon4	c.T143C	p.I48T	.	.	147	7	95	0	.	138
MYO7A	4647	hgsc.bcm.edu	37	11	76895772	76895772	+	Missense_Mutation	SNP	G	G	A	rs78509218		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO7A	NM_001127179	exon27	c.G3515A	p.G1172E	.	.	110	6	120	0	.	138
MYO9A	4649	hgsc.bcm.edu	37	15	72170493	72170493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYO9A	NM_006901	exon31	c.A5819G	p.E1940G	.	.	184	9	120	0	.	93
MYOCD	93649	bcgsc.ca	37	17	12656407	12656407	+	Missense_Mutation	SNP	G	G	T	rs200828842		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	MYOCD	NM_001146312	exon10	c.G1802T	p.C601F	.	.	63	18	82	9	.	93
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41941630	41941630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAA16	NM_024561	exon14	c.A1595G	p.K532R	.	.	91	4	74	0	.	90
NACAD	23148	hgsc.bcm.edu	37	7	45123859	45123859	+	Silent	SNP	G	G	A	rs72497819	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001146334	exon2	c.C1920T	p.S640S	.	.	11	6	5	0	G|0.791;A|0.209	.
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	78513703	78513703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NAV3	NM_014903	exon15	c.A3727G	p.I1243V	.	.	200	75	155	0	.	279
NBEA	26960	hgsc.bcm.edu	37	13	36046643	36046643	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NBEA	NM_015678	exon41	c.T6555C	p.D2185D	.	.	94	4	88	0	.	144
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001039703	exon3	c.C325T	p.L109L	.	.	156	8	145	2	C|0.959;T|0.041	.
NBPF10	100132406	broad.mit.edu	37	1	145296373	145296373	+	Missense_Mutation	SNP	G	G	T	rs3969711	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001039703	exon3	c.G295T	p.V99F	.	.	140	10	126	1	G|0.700;T|0.300	.
NCALD	83988	hgsc.bcm.edu	37	8	102731720	102731720	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NCALD	NM_001040627	exon4	c.A138G	p.E46E	.	.	121	5	120	0	.	90
NCKAP5L	57701	hgsc.bcm.edu	37	12	50189186	50189186	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NCKAP5L	NM_001037806	exon8	c.T2457C	p.P819P	.	.	65	5	43	0	.	68
NCOR2	9612	hgsc.bcm.edu	37	12	124887099	124887099	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NCOR2	NM_006312	exon16	c.A1491G	p.Q497Q	.	.	41	8	32	0	.	229
NEB	4703	bcgsc.ca	37	2	152584274	152584274	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NEB	NM_004543	exon5	c.A225G	p.K75K	.	.	59	4	83	0	.	145
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29576138	29576138	+	Splice_Site	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NF1	NM_000267	exon30	c.4110+1G>C	.	.	.	94	28	87	0	.	3353
NFATC2IP	84901	hgsc.bcm.edu	37	16	28967623	28967623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFATC2IP	NM_032815	exon5	c.T811C	p.C271R	.	.	90	4	68	0	.	91
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47916121	47916121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NFXL1	NM_152995	exon2	c.G100A	p.G34R	.	.	37	15	89	0	.	524
NINL	22981	hgsc.bcm.edu	37	20	25478915	25478915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NINL	NM_025176	exon9	c.T1100C	p.L367P	.	.	108	6	86	0	.	94
NIPBL	25836	hgsc.bcm.edu	37	5	37063996	37063996	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NIPBL	NM_015384	exon46	c.A7965G	p.G2655G	.	.	99	4	64	0	.	293
NLRC3	197358	hgsc.bcm.edu	37	16	3602250	3602250	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NLRC3	NM_178844	exon10	c.A2298G	p.G766G	.	.	117	4	92	0	.	96
NLRP12	91662	bcgsc.ca	37	19	54314099	54314100	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NLRP12	NM_144687	exon3	c.813_814del	p.271_272del	.	.	73	9	90	0	.	211
NOS1	4842	bcgsc.ca	37	12	117768610	117768610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NOS1	NM_000620	exon2	c.T265C	p.S89P	.	.	169	6	114	1	.	154
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555505	44555505	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPC1L1	NM_013389	exon19	c.G3774A	p.K1258K	.	.	93	38	68	0	.	94
NPHS1	4868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36342181	36342181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NPHS1	NM_004646	exon3	c.T380A	p.V127E	.	.	110	26	82	0	.	49
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	261	44	239	0	T|0.024;A|0.976	90
NRDE2	55051	hgsc.bcm.edu	37	14	90755002	90755002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017970	exon11	c.T2717C	p.L906P	.	.	72	4	45	0	.	.
NVL	4931	hgsc.bcm.edu	37	1	224514099	224514099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NVL	NM_001243147	exon2	c.T125C	p.V42A	.	.	110	5	50	0	.	92
NYNRIN	57523	hgsc.bcm.edu;bcgsc.ca	37	14	24879219	24879219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	NYNRIN	NM_025081	exon4	c.A2219C	p.Q740P	.	.	138	8	98	0	.	3
OAS3	4940	hgsc.bcm.edu	37	12	113384738	113384738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OAS3	NM_006187	exon4	c.A827G	p.E276G	.	.	149	5	141	0	.	1
OASL	8638	hgsc.bcm.edu	37	12	121469367	121469367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OASL	NM_198213	exon3	c.A535G	p.K179E	.	.	64	4	59	0	.	69
OR4S2	219431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55418935	55418935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR4S2	NM_001004059	exon1	c.G556T	p.A186S	.	.	301	114	235	0	.	71
OR51G1	79324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4944635	4944635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR51G1	NM_001005237	exon1	c.T935C	p.I312T	.	.	117	16	113	0	.	70
OR5C1	392391	hgsc.bcm.edu	37	9	125551531	125551531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR5C1	NM_001001923	exon1	c.T320C	p.V107A	.	.	101	5	86	0	.	69
OR5M10	390167	hgsc.bcm.edu	37	11	56344851	56344851	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001004741	exon1	c.C347G	p.A116G	.	.	179	6	138	0	.	.
OR5P2	120065	hgsc.bcm.edu	37	11	7818387	7818387	+	Missense_Mutation	SNP	G	G	T	rs201603694		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	OR5P2	NM_153444	exon1	c.C103A	p.L35I	.	.	57	5	37	0	.	496
P2RX2	22953	hgsc.bcm.edu	37	12	133196677	133196677	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RX2	NM_170683	exon5	c.T549C	p.S183S	.	.	96	3	94	0	.	68
P2RY12	64805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151055763	151055763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	P2RY12	NM_022788	exon3	c.G871T	p.A291S	.	.	66	46	111	0	.	501
PARP14	54625	hgsc.bcm.edu;bcgsc.ca	37	3	122419294	122419294	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PARP14	NM_017554	exon6	c.T1893C	p.T631T	.	.	77	4	85	0	.	525
PAX4	5078	hgsc.bcm.edu	37	7	127252032	127252032	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PAX4	NM_006193	exon7	c.A714G	p.V238V	.	.	75	4	59	0	.	227
PAXIP1	22976	hgsc.bcm.edu	37	7	154759592	154759592	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PAXIP1,NS,carcinoma,-2	PAXIP1	NM_007349	exon8	c.T1827C	p.C609C	.	.	75	4	71	1	.	228
PCBP3	54039	hgsc.bcm.edu	37	21	47360058	47360058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCBP3	NM_020528	exon13	c.A1024G	p.T342A	.	.	90	4	73	0	.	227
PCDH8	5100	broad.mit.edu	37	13	53420543	53420543	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCDH8	NM_032949	exon1	c.C2029A	p.L677I	.	.	5	2	23	0	.	153
PCDHGA11	56105	broad.mit.edu;bcgsc.ca	37	5	140802511	140802511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_032091	exon1	c.T1717C	p.S573P	.	.	186	7	166	0	.	.
PCDHGB4	8641	broad.mit.edu	37	5	140768725	140768725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_032098	exon1	c.G1274T	p.R425L	.	.	70	4	54	0	.	.
PCMTD1	115294	hgsc.bcm.edu;bcgsc.ca	37	8	52746162	52746162	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PCMTD1	NM_052937	exon4	c.A498G	p.G166G	.	.	74	4	84	0	.	68
PCNXL4	64430	hgsc.bcm.edu	37	14	60585412	60585412	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_022495	exon6	c.1240+2T>C	.	.	.	100	4	80	0	.	.
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178545631	178545631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDE11A	NM_016953	exon16	c.G2346T	p.E782D	.	.	24	10	38	0	.	93
PDGFC	56034	bcgsc.ca	37	4	157732026	157732026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDGFC	NM_016205	exon3	c.A458G	p.E153G	.	.	181	6	254	0	.	525
PDHB	5162	hgsc.bcm.edu	37	3	58415861	58415861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PDHB	NM_000925	exon7	c.A694G	p.R232G	.	.	98	4	79	0	.	91
PEAR1	375033	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156878092	156878092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PEAR1	NM_001080471	exon9	c.T1075C	p.C359R	.	.	123	18	61	1	.	71
PELP1	27043	hgsc.bcm.edu;bcgsc.ca	37	17	4585844	4585844	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PELP1	NM_014389	exon5	c.A595G	p.M199V	.	.	61	4	75	0	.	24
PER2	8864	hgsc.bcm.edu	37	2	239165617	239165617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PER2	NM_022817	exon17	c.A2011G	p.S671G	.	.	113	6	78	0	.	154
PHRF1	57661	bcgsc.ca	37	11	611081	611081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PHRF1	NM_020901	exon17	c.A4802G	p.K1601R	.	.	127	15	65	1	.	22
PHRF1	57661	ucsc.edu	37	11	607758	607758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PHRF1	NM_020901	exon14	c.A2299G	p.K767E	.	.	45	4	35	0	.	22
PIDD	55367	hgsc.bcm.edu	37	11	802841	802841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIDD	NM_145887	exon4	c.T760C	p.S254P	.	.	147	6	127	0	.	205
PIGN	23556	hgsc.bcm.edu;bcgsc.ca	37	18	59713126	59713126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIGN	NM_176787	exon31	c.T2759C	p.L920P	.	.	94	5	77	0	.	227
PIGO	84720	broad.mit.edu	37	9	35091651	35091651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIGO	NM_032634	exon7	c.C2233T	p.R745W	.	.	63	4	64	0	.	290
PIM3	415116	hgsc.bcm.edu	37	22	50355358	50355358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PIM3	NM_001001852	exon4	c.A515G	p.K172R	.	.	74	4	109	0	.	521
PJA1	64219	hgsc.bcm.edu	37	X	68382107	68382107	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PJA1	NM_145119	exon2	c.A975G	p.K325K	.	.	88	5	68	0	.	130
PKD1	5310	hgsc.bcm.edu	37	16	2153323	2153323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD1	NM_000296	exon23	c.A8735G	p.D2912G	.	.	86	4	110	0	.	91
PKD2	5311	hgsc.bcm.edu;bcgsc.ca	37	4	88940628	88940628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKD2	NM_000297	exon2	c.T614C	p.L205P	.	.	61	4	44	0	.	91
PKDREJ	10343	hgsc.bcm.edu	37	22	46656813	46656813	+	Missense_Mutation	SNP	T	T	C	rs144736781	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PKDREJ	NM_006071	exon1	c.A2407G	p.I803V	.	.	94	4	144	0	T|1.000;C|0.000	156
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48565265	48565265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLA2G4C	NM_001159322	exon14	c.A1277G	p.D426G	.	.	59	26	45	0	.	92
PLEKHA5	54477	hgsc.bcm.edu	37	12	19436349	19436349	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLEKHA5	NM_001256470	exon12	c.T1449C	p.P483P	.	.	92	5	85	0	.	227
PLEKHG1	57480	hgsc.bcm.edu	37	6	151121959	151121959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLEKHG1	NM_001029884	exon7	c.T734C	p.L245P	.	.	93	4	105	0	.	92
PLEKHM1P	440456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62796826	62796826	+	RNA	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	124	38	86	0	.	.
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19116605	19116605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PLIN2	NM_001122	exon8	c.C955G	p.Q319E	.	.	217	97	200	0	.	92
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6026652	6026652	+	Missense_Mutation	SNP	C	C	G	rs63750739	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PMS2	NM_000535	exon11	c.G1744C	p.E582Q	.	.	86	41	77	0	.	1083
PNISR	25957	hgsc.bcm.edu	37	6	99862518	99862518	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PNISR	NM_015491	exon2	c.A18G	p.G6G	.	.	76	4	106	0	.	22
POLQ	10721	hgsc.bcm.edu	37	3	121186373	121186373	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	POLQ	NM_199420	exon24	c.T6960C	p.P2320P	.	.	89	4	84	0	.	664
POLR3D	661	hgsc.bcm.edu	37	8	22106822	22106822	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	POLR3D	NM_001722	exon7	c.A921G	p.R307R	.	.	84	5	90	0	.	90
PPIL4	85313	hgsc.bcm.edu;bcgsc.ca	37	6	149867088	149867088	+	Silent	SNP	G	G	A	rs200555722	alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPIL4	NM_139126	exon1	c.C54T	p.T18T	.	.	49	4	86	0	G|0.997;C|0.003	90
PPM1E	22843	hgsc.bcm.edu	37	17	56833454	56833454	+	Silent	SNP	G	G	A	rs77856248	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPM1E	NM_014906	exon1	c.G96A	p.E32E	.	.	83	6	109	0	.	291
PPP3CA	5530	hgsc.bcm.edu;bcgsc.ca	37	4	102030182	102030182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon3	c.G313A	p.G105R	.	.	86	4	76	0	.	227
PPP3CA	5530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	101982264	101982264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPP3CA	NM_000944	exon10	c.C1136T	p.S379L	.	.	405	86	424	0	.	227
PPRC1	23082	hgsc.bcm.edu	37	10	103908392	103908392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPRC1	NM_015062	exon11	c.T4558C	p.S1520P	.	.	97	4	130	0	.	227
PPTC7	160760	bcgsc.ca	37	12	110989758	110989758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PPTC7	NM_139283	exon2	c.T239C	p.V80A	.	.	128	5	99	0	.	90
PRRC2A	7916	hgsc.bcm.edu	37	6	31594920	31594920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PRRC2A	NM_004638	exon11	c.T1235A	p.L412Q	.	.	86	4	78	0	.	156
PRRC2C	23215	broad.mit.edu	37	1	171526745	171526745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_015172	exon19	c.T5488C	p.S1830P	.	.	440	15	209	0	.	.
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	171510373	171510373	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_015172	exon16	c.C3762T	p.V1254V	.	.	431	29	157	0	.	.
PRUNE2	158471	hgsc.bcm.edu	37	9	79324155	79324155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PRUNE2	NM_015225	exon8	c.C3035A	p.P1012H	.	.	176	9	151	0	.	157
PSMF1	9491	hgsc.bcm.edu;bcgsc.ca	37	20	1145055	1145055	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PSMF1	NM_006814	exon6	c.T699C	p.P233P	.	.	118	6	111	0	.	90
PTGER2	5732	hgsc.bcm.edu	37	14	52794168	52794168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	PTGER2,NS,carcinoma,+1	PTGER2	NM_000956	exon2	c.T1073C	p.L358P	.	.	64	3	29	0	.	658
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71478142	71478142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTGER3	NM_001126044	exon2	c.A923T	p.N308I	.	.	99	35	65	0	.	660
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114380814	114380814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PTPN22	NM_015967	exon13	c.C1208T	p.P403L	.	.	124	45	126	0	.	227
PXDN	7837	hgsc.bcm.edu	37	2	1677567	1677567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	PXDN	NM_012293	exon9	c.A866G	p.K289R	.	.	121	5	108	0	.	166
RAB28	9364	hgsc.bcm.edu;bcgsc.ca	37	4	13462450	13462450	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RAB28	NM_004249	exon4	c.A264G	p.G88G	.	.	104	5	63	0	.	228
RAB33B	83452	broad.mit.edu;bcgsc.ca	37	4	140394113	140394113	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RAB33B	NM_031296	exon2	c.T523C	p.F175L	.	.	190	7	121	0	.	227
RASA2	5922	bcgsc.ca	37	3	141328725	141328725	+	Missense_Mutation	SNP	G	G	T	rs200247437		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RASA2	NM_006506	exon23	c.G2336T	p.C779F	.	.	76	17	124	6	.	661
RBM47	54502	hgsc.bcm.edu	37	4	40440472	40440472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM47	NM_001098634	exon4	c.A439G	p.S147G	.	.	96	4	96	0	.	25
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	50103698	50103698	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RBM6	NM_005777	exon17	c.2706delC	p.I902fs	.	.	53	16	44	0	.	280
RECK	8434	bcgsc.ca	37	9	36120720	36120720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RECK	NM_021111	exon19	c.A2525G	p.D842G	.	.	71	4	95	1	.	93
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100029414	100029414	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REV1	NM_016316	exon14	c.1952-1G>A	.	.	.	117	46	120	0	.	92
REXO1	57455	hgsc.bcm.edu	37	19	1816497	1816497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	REXO1	NM_020695	exon14	c.T3389C	p.L1130P	.	.	77	4	71	0	.	90
RIMS2	9699	hgsc.bcm.edu	37	8	104898200	104898200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RIMS2	NM_001100117	exon4	c.A1373G	p.H458R	.	.	109	5	79	0	.	279
RNF44	22838	hgsc.bcm.edu	37	5	175958000	175958000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RNF44	NM_014901	exon5	c.A488G	p.Q163R	.	.	91	4	57	0	.	658
ROBO3	64221	hgsc.bcm.edu	37	11	124750459	124750459	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ROBO3	NM_022370	exon27	c.T4104C	p.S1368S	.	.	48	8	70	0	.	113
ROPN1L	83853	hgsc.bcm.edu	37	5	10450066	10450066	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ROPN1L	NM_031916	exon3	c.T258C	p.C86C	.	.	96	4	71	0	.	91
RORA	6095	hgsc.bcm.edu	37	15	60806947	60806947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RORA	NM_134260	exon5	c.A391G	p.R131G	.	.	99	4	107	0	.	290
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55537397	55537397	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RP1	NM_006269	exon4	c.A955G	p.I319V	.	.	94	4	79	0	.	102
RPAP2	79871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92789250	92789250	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPAP2	NM_024813	exon8	c.C773G	p.S258C	.	.	149	73	125	0	.	91
RPH3A	22895	hgsc.bcm.edu	37	12	113319635	113319635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPH3A	NM_001143854	exon15	c.T1310C	p.L437P	.	.	111	5	99	0	.	519
RPUSD4	84881	bcgsc.ca	37	11	126079515	126079515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RPUSD4	NM_001144827	exon3	c.A458G	p.D153G	.	.	171	27	131	3	.	153
RRP12	23223	bcgsc.ca	37	10	99148034	99148034	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RRP12	NM_015179	exon8	c.T992C	p.L331P	.	.	61	4	83	0	.	92
RSBN1	54665	hgsc.bcm.edu	37	1	114354478	114354478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RSBN1	NM_018364	exon1	c.A557G	p.K186R	.	.	74	4	77	0	.	91
RYR1	6261	hgsc.bcm.edu	37	19	38939069	38939069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	RYR1	NM_001042723	exon10	c.T875C	p.L292P	.	.	82	4	68	0	.	100
SAMD12	401474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119452108	119452108	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SAMD12	NM_207506	exon3	c.G285C	p.Q95H	.	.	176	70	172	0	.	227
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75310253	75310253	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCAMP5	NM_001178111	exon6	c.C336T	p.F112F	.	.	135	50	121	0	.	23
SCEL	8796	hgsc.bcm.edu	37	13	78143580	78143580	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCEL	NM_003843	exon8	c.A473G	p.K158R	.	.	65	4	56	0	.	95
SCRN3	79634	hgsc.bcm.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SCRN3	NM_024583	exon8	c.T1251G	p.N417K	.	.	300	27	247	0	T|0.842;G|0.157	91
SDK2	54549	hgsc.bcm.edu	37	17	71386431	71386431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SDK2	NM_001144952	exon29	c.A4187G	p.K1396R	.	.	84	4	59	0	.	24
SEC23IP	11196	hgsc.bcm.edu	37	10	121677482	121677482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEC23IP	NM_007190	exon9	c.A1679G	p.N560S	.	.	93	5	101	0	.	93
SEC61A1	29927	hgsc.bcm.edu	37	3	127775642	127775642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEC61A1	NM_013336	exon5	c.A311G	p.D104G	.	.	105	6	82	0	.	91
SEL1L3	23231	bcgsc.ca	37	4	25792104	25792104	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_015187	exon12	c.A2049G	p.E683E	.	.	198	6	211	0	.	.
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590840	83590840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SEMA3A	NM_006080	exon17	c.C2163A	p.F721L	.	.	549	109	238	0	.	156
SENP6	26054	hgsc.bcm.edu	37	6	76405605	76405605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SENP6	NM_015571	exon17	c.A2161G	p.R721G	.	.	97	4	154	0	.	660
SERGEF	26297	hgsc.bcm.edu	37	11	18026056	18026056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SERGEF	NM_012139	exon4	c.T379C	p.S127P	.	.	62	4	48	0	.	227
SERPINB10	5273	hgsc.bcm.edu	37	18	61587033	61587033	+	Silent	SNP	A	A	G	rs149788289		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SERPINB10	NM_005024	exon4	c.A384G	p.E128E	.	.	75	4	66	0	A|1.000;G|0.000	227
SETD1B	23067	hgsc.bcm.edu	37	12	122246139	122246139	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SETD1B	NM_015048	exon4	c.A570G	p.E190E	.	.	142	6	114	0	.	86
SETD9	133383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	56205565	56205565	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_153706	exon1	c.C93T	p.N31N	.	.	132	52	131	0	.	.
SETX	23064	hgsc.bcm.edu	37	9	135202230	135202230	+	Silent	SNP	A	A	G	rs151237267	byfrequency;alternate_allele	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SETX	NM_015046	exon10	c.T4755C	p.P1585P	.	.	127	6	127	0	A|0.995;C|0.005	93
SFPQ	6421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35656352	35656352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SFPQ	NM_005066	exon3	c.A1262C	p.K421T	.	.	155	57	137	0	.	231
SH3D19	152503	hgsc.bcm.edu	37	4	152095911	152095911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SH3D19	NM_001128924	exon1	c.A605G	p.D202G	.	.	125	5	96	0	.	92
SH3GLB1	51100	broad.mit.edu	37	1	87200779	87200779	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SH3GLB1	NM_001206651	exon8	c.T765C	p.C255C	.	.	172	5	142	0	.	90
SHH	6469	broad.mit.edu	37	7	155604779	155604779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SHH	NM_000193	exon1	c.T38C	p.V13A	.	.	171	5	172	0	.	1134
SKIV2L2	23517	hgsc.bcm.edu	37	5	54635841	54635841	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SKIV2L2	NM_015360	exon6	c.T519C	p.Y173Y	.	.	93	5	73	0	.	92
SLC10A2	6555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103701761	103701761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC10A2	NM_000452	exon5	c.A797G	p.N266S	.	.	187	70	143	0	.	94
SLC12A2	6558	hgsc.bcm.edu	37	5	127484452	127484452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC12A2	NM_001046	exon12	c.T1888C	p.C630R	.	.	97	4	66	0	.	94
SLC16A14	151473	broad.mit.edu	37	2	230923970	230923970	+	Silent	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC16A14	NM_152527	exon2	c.T99A	p.A33A	.	.	212	5	146	0	.	96
SLC1A5	6510	hgsc.bcm.edu	37	19	47280496	47280496	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC1A5	NM_005628	exon6	c.T1225C	p.L409L	.	.	82	5	49	0	.	90
SLC22A11	55867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64326710	64326710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC22A11	NM_018484	exon2	c.G497A	p.R166Q	.	.	98	39	67	0	.	91
SLC22A14	9389	bcgsc.ca	37	3	38357121	38357121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC22A14	NM_004803	exon8	c.T1451C	p.L484P	.	.	130	5	136	0	.	90
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	92953018	92953024	+	Frame_Shift_Del	DEL	TATCGGA	TATCGGA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TATCGGA	TATCGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC24A4	NM_153646	exon14	c.1431_1437del	p.477_479del	.	.	242	38	226	0	.	93
SLC35D1	23169	hgsc.bcm.edu;bcgsc.ca	37	1	67512974	67512974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC35D1	NM_015139	exon7	c.T610C	p.Y204H	.	.	75	4	61	0	.	90
SLC38A1	81539	hgsc.bcm.edu	37	12	46598344	46598344	+	Silent	SNP	A	A	G	rs148843987		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	SLC38A1,hand,malignant_melanoma,0	SLC38A1	NM_030674	exon10	c.T676C	p.L226L	.	.	58	3	53	0	.	518
SLC4A8	9498	bcgsc.ca	37	12	51857441	51857441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC4A8	NM_001039960	exon11	c.A1292G	p.H431R	.	.	74	4	60	0	.	95
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	333670	333670	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC6A13	NM_016615	exon10	c.T1070C	p.L357P	.	.	176	63	152	0	.	90
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	477525	477525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3	NM_004174	exon11	c.C1682A	p.S561Y	.	.	189	44	106	0	.	90
SLC9A3R1	9368	hgsc.bcm.edu	37	17	72759578	72759578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLC9A3R1	NM_004252	exon3	c.A676G	p.T226A	.	.	242	12	152	0	.	90
SLCO5A1	81796	hgsc.bcm.edu	37	8	70744610	70744610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLCO5A1	NM_030958	exon2	c.A299G	p.D100G	.	.	138	18	117	0	.	94
SLFN14	342618	hgsc.bcm.edu	37	17	33880034	33880034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SLFN14	NM_001129820	exon3	c.A1619G	p.E540G	.	.	109	9	112	0	.	1
SMC3	9126	hgsc.bcm.edu;bcgsc.ca	37	10	112356255	112356255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SMC3	NM_005445	exon19	c.A2063G	p.E688G	.	.	61	4	61	0	.	92
SNRPA1	6627	hgsc.bcm.edu	37	15	101827183	101827183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNRPA1	NM_003090	exon5	c.A389G	p.H130R	.	.	87	4	64	0	.	226
SNX21	90203	hgsc.bcm.edu	37	20	44469288	44469288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX21	NM_001042633	exon5	c.T469C	p.S157P	.	.	86	4	76	0	.	290
SNX25	83891	hgsc.bcm.edu;bcgsc.ca	37	4	186185597	186185597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SNX25	NM_031953	exon4	c.A245G	p.E82G	.	.	60	4	104	0	.	273
SORL1	6653	hgsc.bcm.edu	37	11	121420770	121420770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SORL1	NM_003105	exon15	c.T2153C	p.V718A	.	.	92	5	54	0	.	228
SPATA13	221178	hgsc.bcm.edu	37	13	24797158	24797158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPATA13	NM_001166271	exon2	c.T91C	p.C31R	.	.	94	4	80	0	.	229
SPDL1	54908	hgsc.bcm.edu	37	5	169031187	169031187	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017785	exon12	c.A1794G	p.P598P	.	.	97	4	69	0	.	.
SPEN	23013	hgsc.bcm.edu	37	1	16263967	16263967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPEN	NM_015001	exon12	c.T10336C	p.S3446P	.	.	74	6	50	0	.	298
SPI1	6688	hgsc.bcm.edu	37	11	47380554	47380554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPI1	NM_001080547	exon4	c.T337C	p.S113P	.	.	306	13	225	0	.	226
SPOP	8405	hgsc.bcm.edu;bcgsc.ca	37	17	47684733	47684733	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPOP	NM_001007228	exon8	c.A716G	p.N239S	.	.	67	4	81	0	.	660
SPTB	6710	bcgsc.ca	37	14	65241944	65241944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTB	NM_001024858	exon22	c.A4741G	p.R1581G	.	.	64	4	82	1	.	100
SPTBN4	57731	hgsc.bcm.edu	37	19	41029483	41029483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN4	NM_020971	exon17	c.T3794C	p.L1265P	.	.	86	5	62	0	.	94
SPTBN4	57731	hgsc.bcm.edu	37	19	41066144	41066144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN4	NM_020971	exon27	c.A5750G	p.E1917G	.	.	155	7	145	0	.	94
SPTBN5	51332	hgsc.bcm.edu	37	15	42163597	42163597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SPTBN5	NM_016642	exon29	c.T5318C	p.V1773A	.	.	153	6	212	0	.	91
SRCAP	10847	hgsc.bcm.edu	37	16	30732698	30732698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRCAP	NM_006662	exon21	c.T3442C	p.S1148P	.	.	100	5	69	0	.	94
SRP72	6731	hgsc.bcm.edu	37	4	57340277	57340277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_006947	exon4	c.A412G	p.N138D	.	.	126	13	128	0	.	116
SRP72	6731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	57340266	57340277	+	In_Frame_Del	DEL	ATCTCGTCCGAA	ATCTCGTCCGAA	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	ATCTCGTCCGAA	ATCTCGTCCGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SRP72	NM_006947	exon4	c.401_412del	p.134_138del	.	.	126	20	126	0	.	116
SSBP1	6742	hgsc.bcm.edu;bcgsc.ca	37	7	141441987	141441987	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SSBP1	NM_001256513	exon3	c.A43G	p.R15G	.	.	61	4	41	0	.	91
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476671	+	Missense_Mutation	SNP	T	T	C	rs201032059		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_198455	exon10	c.T1121C	p.L374P	.	.	420	42	159	0	.	.
SST	6750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187388043	187388043	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SST	NM_001048	exon1	c.C37T	p.L13L	.	.	108	50	131	0	.	91
STAG3L2	442582	ucsc.edu	37	7	74306639	74306639	+	RNA	SNP	C	C	G	rs76222990	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	.	.	.	35	6	19	3	C|0.500;G|0.500	.
STIL	6491	broad.mit.edu	37	1	47748019	47748019	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	STIL	NM_003035	exon11	c.A1246G	p.K416E	.	.	41	3	32	0	.	659
STS	412	hgsc.bcm.edu	37	X	7177425	7177425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	STS	NM_000351	exon5	c.A433G	p.T145A	.	.	98	4	60	0	.	130
SULF1	23213	hgsc.bcm.edu	37	8	70541861	70541861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SULF1	NM_001128205	exon19	c.T2231C	p.L744P	.	.	120	6	109	0	.	518
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24582054	24582054	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SUSD2	NM_019601	exon9	c.G1410A	p.E470E	.	.	220	52	136	0	.	91
SYNE1	23345	hgsc.bcm.edu	37	6	152623096	152623096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNE1	NM_182961	exon92	c.A17449G	p.T5817A	.	.	88	4	105	0	.	607
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33405455	33405455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNGAP1	NM_006772	exon8	c.G773A	p.R258H	.	.	64	24	59	0	.	48
SYNJ1	8867	hgsc.bcm.edu	37	21	34003928	34003928	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNJ1	NM_003895	exon32	c.T4216A	p.L1406M	.	.	76	3	78	0	.	232
SYNPO2	171024	hgsc.bcm.edu	37	4	119947966	119947966	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	SYNPO2	NM_001128934	exon3	c.A442G	p.S148G	.	.	78	6	77	0	.	92
TAF1C	9013	hgsc.bcm.edu	37	16	84212770	84212770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAF1C	NM_005679	exon14	c.A2387G	p.Q796R	.	.	68	4	71	0	.	91
TAF4	6874	bcgsc.ca	37	20	60551353	60551353	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAF4	NM_003185	exon15	c.T3129C	p.G1043G	.	.	74	5	70	0	.	93
TAF5	6877	hgsc.bcm.edu	37	10	105139430	105139430	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAF5	NM_006951	exon4	c.A1179G	p.G393G	.	.	89	4	134	0	.	92
TAS1R1	80835	hgsc.bcm.edu	37	1	6638906	6638906	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS1R1	NM_138697	exon6	c.G1788A	p.V596V	.	.	100	5	107	0	.	516
TAS2R41	259287	broad.mit.edu	37	7	143175152	143175152	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS2R41	NM_176883	exon1	c.A187G	p.T63A	.	.	268	18	137	1	.	92
TAS2R7	50837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10954420	10954420	+	Silent	SNP	G	G	A	rs201086265	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TAS2R7	NM_023919	exon1	c.C750T	p.S250S	.	.	177	69	112	0	G|0.997;A|0.003	91
TBC1D12	23232	hgsc.bcm.edu	37	10	96260080	96260080	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBC1D12	NM_015188	exon6	c.T1515C	p.T505T	.	.	70	4	120	0	.	68
TBC1D9	23158	broad.mit.edu	37	4	141545544	141545544	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBC1D9	NM_015130	exon20	c.2900-2A>G	.	.	.	104	4	83	0	.	23
TBK1	29110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64889483	64889483	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBK1	NM_013254	exon15	c.G1648C	p.E550Q	.	.	109	50	58	0	.	1459
TBP	6908	hgsc.bcm.edu	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TBP	NM_003194	exon3	c.A189G	p.Q63Q	.	.	53	4	87	0	.	91
TCTEX1D1	200132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67241997	67241997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TCTEX1D1	NM_152665	exon4	c.C247G	p.H83D	.	.	231	95	174	0	.	90
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	179564922	179564922	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TDRD5	NM_173533	exon4	c.C800G	p.S267X	.	.	259	42	102	0	.	94
TEAD3	7005	hgsc.bcm.edu	37	6	35443341	35443341	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TEAD3	NM_003214	exon12	c.1041+2T>C	.	.	.	131	6	95	0	.	23
TELO2	9894	hgsc.bcm.edu	37	16	1551668	1551668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TELO2	NM_016111	exon11	c.T1366C	p.S456P	.	.	138	6	121	0	.	90
THEM4	117145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151867506	151867506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	THEM4	NM_053055	exon2	c.A264C	p.Q88H	.	.	241	11	97	0	.	522
TICRR	90381	broad.mit.edu	37	15	90167999	90167999	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_152259	exon20	c.A4458G	p.E1486E	.	.	175	4	141	0	.	.
TIGD7	91151	hgsc.bcm.edu	37	16	3348989	3348989	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TIGD7	NM_033208	exon2	c.T1626C	p.P542P	.	.	80	4	92	0	.	90
TMCC1	23023	hgsc.bcm.edu	37	3	129547013	129547013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMCC1	NM_001017395	exon3	c.T209C	p.V70A	.	.	93	4	69	0	.	91
TMEM181	57583	hgsc.bcm.edu;bcgsc.ca	37	6	159005001	159005001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM181	NM_020823	exon4	c.A595G	p.I199V	.	.	48	4	65	0	.	70
TMEM184C	55751	bcgsc.ca	37	4	148555047	148555047	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM184C	NM_018241	exon9	c.A1011G	p.S337S	.	.	71	4	73	0	.	90
TMEM260	0	hgsc.bcm.edu	37	14	57083976	57083976	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_017799	exon9	c.A1017G	p.R339R	.	.	108	5	109	0	.	.
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14180787	14180787	+	Silent	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM43	NM_024334	exon11	c.C990T	p.L330L	.	.	174	72	109	0	.	91
TMEM67	91147	hgsc.bcm.edu	37	8	94822029	94822029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TMEM67	NM_153704	exon26	c.A2678G	p.D893G	.	.	92	4	90	0	.	92
TNKS1BP1	85456	hgsc.bcm.edu	37	11	57076580	57076580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNKS1BP1	NM_033396	exon6	c.A3605G	p.D1202G	.	.	125	5	116	0	.	91
TNPO1	3842	hgsc.bcm.edu	37	5	72168546	72168546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNPO1	NM_002270	exon7	c.A677G	p.E226G	.	.	133	6	117	0	.	228
TNRC6A	27327	hgsc.bcm.edu	37	16	24801444	24801444	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1481G	p.Q494R	.	.	86	4	90	0	.	92
TNRC6A	27327	hgsc.bcm.edu;bcgsc.ca	37	16	24801289	24801289	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6A	NM_014494	exon6	c.A1326G	p.Q442Q	.	.	83	4	72	0	.	92
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40660706	40660706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TNRC6B	NM_001162501	exon5	c.G472A	p.G158S	.	.	138	36	94	0	.	22
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145659589	145659589	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TONSL	NM_013432	exon21	c.C3159T	p.A1053A	.	.	100	9	123	0	.	92
TOP2A	7153	hgsc.bcm.edu	37	17	38552571	38552571	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TOP2A	NM_001067	exon28	c.A3684G	p.K1228K	.	.	46	4	69	0	.	655
TP53I13	90313	hgsc.bcm.edu	37	17	27899619	27899619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TP53I13	NM_138349	exon6	c.A973G	p.T325A	.	.	116	5	90	0	.	90
TPCN1	53373	hgsc.bcm.edu	37	12	113730811	113730811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TPCN1	NM_001143819	exon27	c.A2402G	p.E801G	.	.	87	5	71	0	.	93
TRDN	10345	mdanderson.org	37	6	123699015	123699015	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TRDN	NM_001251987	exon17	c.A1218G	p.E406E	.	.	14	3	12	0	.	91
TSC1	7248	hgsc.bcm.edu;bcgsc.ca	37	9	135798881	135798881	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSC1	NM_001162427	exon6	c.211-2A>G	.	.	.	127	7	119	0	.	1906
TSG101	7251	bcgsc.ca	37	11	18536321	18536321	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSG101	NM_006292	exon4	c.T261C	p.C87C	.	.	105	4	89	0	.	90
TSPYL6	388951	hgsc.bcm.edu	37	2	54482716	54482716	+	Silent	SNP	G	G	A	rs79371652	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TSPYL6	NM_001003937	exon1	c.C573T	p.P191P	.	.	63	7	58	0	G|0.991;A|0.008	90
TTF2	8458	hgsc.bcm.edu	37	1	117634026	117634026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TTF2	NM_003594	exon16	c.A2665G	p.S889G	.	.	71	4	46	0	.	91
TTN	7273	hgsc.bcm.edu	37	2	179659759	179659759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TTN	NM_001267550	exon7	c.A1135G	p.R379G	.	.	57	4	31	0	.	636
TXN	7295	hgsc.bcm.edu;bcgsc.ca	37	9	113018699	113018699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TXN	NM_001244938	exon1	c.A17G	p.E6G	.	.	65	6	52	0	.	90
TYW1	55253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66660199	66660199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	TYW1	NM_018264	exon15	c.A1852T	p.M618L	.	.	227	77	179	1	.	91
UBLCP1	134510	hgsc.bcm.edu;bcgsc.ca	37	5	158705274	158705274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	UBLCP1	NM_145049	exon9	c.A713G	p.K238R	.	.	74	4	46	0	.	91
ULK2	9706	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	19700945	19700945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ULK2	NM_001142610	exon18	c.A1573G	p.R525G	.	.	33	4	42	0	.	334
URI1	8725	mdanderson.org	37	19	30500143	30500143	+	Silent	SNP	T	T	C	rs1127493	byfrequency	TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_003796	exon8	c.T918C	p.D306D	.	.	67	14	75	0	T|0.979;C|0.021	.
USP9Y	8287	hgsc.bcm.edu	37	Y	14928278	14928278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	USP9Y	NM_004654	exon32	c.A4829G	p.E1610G	.	.	87	4	54	0	.	136
USP9Y	8287	hgsc.bcm.edu	37	Y	14951989	14951989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	USP9Y	NM_004654	exon36	c.A5537G	p.N1846S	.	.	68	4	48	0	.	136
UTRN	7402	bcgsc.ca	37	6	145069467	145069467	+	Silent	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	UTRN	NM_007124	exon54	c.A8025G	p.L2675L	.	.	22	3	30	0	.	95
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1377635	1377635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_020894	exon13	c.G1943A	p.G648D	.	.	48	24	64	0	.	.
VAPA	9218	hgsc.bcm.edu	37	18	9931911	9931911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VAPA	NM_003574	exon2	c.A184G	p.R62G	.	.	97	4	73	0	.	90
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82835029	82835029	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VCAN	NM_004385	exon8	c.G6207A	p.T2069T	.	.	91	36	66	0	.	238
VPS37A	137492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17132309	17132309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VPS37A	NM_152415	exon5	c.C484A	p.P162T	.	.	117	64	174	0	.	90
VSIG10	54621	hgsc.bcm.edu	37	12	118506333	118506333	+	Silent	SNP	C	C	T	rs199991783		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_019086	exon8	c.G1416A	p.E472E	.	.	212	26	182	0	.	.
VWA2	340706	hgsc.bcm.edu	37	10	116044664	116044664	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	VWA2	NM_001272046	exon10	c.T932C	p.V311A	.	.	65	4	75	0	.	156
WBP4	11193	hgsc.bcm.edu	37	13	41642739	41642739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WBP4	NM_007187	exon5	c.C305T	p.P102L	.	.	64	4	50	0	.	289
WEE2	494551	hgsc.bcm.edu	37	7	141420771	141420771	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WEE2	NM_001105558	exon5	c.G795A	p.V265V	.	.	96	4	75	0	.	305
WRN	7486	hgsc.bcm.edu	37	8	31024656	31024656	+	Silent	SNP	T	T	C	rs201955394		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WRN	NM_000553	exon34	c.T4101C	p.C1367C	.	.	95	4	153	0	T|0.999;C|0.000	1036
WSCD2	9671	hgsc.bcm.edu	37	12	108642083	108642083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	WSCD2	NM_014653	exon9	c.A1661G	p.N554S	.	.	95	4	70	0	.	136
YY1	7528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100742844	100742844	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1	NM_003403	exon4	c.C921G	p.F307L	.	.	105	27	85	0	.	226
YY1AP1	55249	hgsc.bcm.edu	37	1	155630158	155630158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	YY1AP1	NM_001198903	exon10	c.T1957C	p.S653P	.	.	247	14	82	0	.	93
ZBED4	9889	hgsc.bcm.edu	37	22	50280096	50280096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZBED4	NM_014838	exon2	c.T2786C	p.V929A	.	.	111	5	165	0	.	92
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132334321	132334321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZCCHC10	NM_017665	exon4	c.A467G	p.D156G	.	.	100	36	82	0	.	90
ZFAT	57623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	135545117	135545124	+	Frame_Shift_Del	DEL	CACGTTGG	CACGTTGG	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CACGTTGG	CACGTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFAT	NM_020863	exon12	c.3068_3075del	p.1023_1025del	.	.	64	10	66	0	.	90
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	77768488	77768488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon10	c.G9331A	p.G3111R	.	.	69	5	66	0	.	98
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77616371	77616371	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFHX4	NM_024721	exon2	c.G48A	p.Q16Q	.	.	144	63	126	0	.	98
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68220472	68220472	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZFYVE26	NM_015346	exon39	c.A7140G	p.G2380G	.	.	77	4	61	0	.	162
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	123964092	123964092	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZHX2	NM_014943	exon3	c.A342T	p.E114D	.	.	75	21	43	0	.	227
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	147128512	147128526	+	In_Frame_Del	DEL	GCCGCGCATCACGGC	GCCGCGCATCACGGC	-	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	GCCGCGCATCACGGC	GCCGCGCATCACGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZIC1	NM_003412	exon1	c.613_627del	p.205_209del	.	.	51	15	119	0	.	91
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20567643	20567643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZMYM2	NM_001190964	exon4	c.C431T	p.P144L	.	.	113	43	91	0	.	685
ZNF136	7695	bcgsc.ca	37	19	12298679	12298679	+	Missense_Mutation	SNP	A	A	G	rs201316262		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF136	NM_003437	exon4	c.A1486G	p.R496G	.	.	68	4	47	0	A|1.000;G|0.000	92
ZNF208	7757	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22157531	22157531	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF208	NM_007153	exon4	c.G305C	p.R102T	.	.	100	37	80	1	.	7
ZNF300	91975	hgsc.bcm.edu	37	5	150275250	150275250	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF300	NM_001172831	exon7	c.A1599G	p.G533G	.	.	73	4	62	0	.	92
ZNF319	57567	hgsc.bcm.edu;bcgsc.ca	37	16	58031121	58031121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF319	NM_020807	exon2	c.T1049C	p.M350T	.	.	75	5	88	0	.	90
ZNF404	342908	broad.mit.edu;bcgsc.ca	37	19	44377922	44377922	+	Silent	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001033719	exon2	c.A435G	p.E145E	.	.	221	7	151	0	.	.
ZNF469	84627	hgsc.bcm.edu	37	16	88497617	88497617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001127464	exon2	c.T3655C	p.S1219P	.	.	88	4	73	0	.	.
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30793663	30793663	+	Silent	SNP	G	G	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_001080417	exon3	c.C1986T	p.Y662Y	.	.	56	18	58	0	.	.
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23938330	23938330	+	Silent	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	NM_138286	exon2	c.G27T	p.V9V	.	.	36	10	36	0	.	.
ZNF691	51058	hgsc.bcm.edu	37	1	43316763	43316763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF691	NM_001242739	exon4	c.T227C	p.L76P	.	.	95	4	66	0	.	24
ZNF830	91603	hgsc.bcm.edu	37	17	33289487	33289487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF830	NM_052857	exon1	c.T902C	p.L301S	.	.	93	4	73	0	.	89
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	57175640	57175640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF835	NM_001005850	exon2	c.G927T	p.Q309H	.	.	21	12	16	0	.	72
ZNF843	283933	bcgsc.ca	37	16	31447690	31447690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZNF843	NM_001136509	exon2	c.T481C	p.S161P	.	.	64	4	82	1	.	68
ZSWIM4	65249	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13910558	13910558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	ZSWIM4	NM_023072	exon2	c.C178T	p.P60S	.	.	151	55	129	2	.	90
C10orf113	387638	hgsc.bcm.edu	37	10	21435343	21435344	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.S32F	.	.	.	.	.	.	.	
OR5M10	390167	hgsc.bcm.edu	37	11	56344846	56344847	+	Missense_Mutation	DNP	TT	TT	AG	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.M118L	.	.	.	.	.	.	.	
LCE4A	199834	hgsc.bcm.edu	37	1	152681679	152681680	+	Missense_Mutation	DNP	CC	CC	GT	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.S43C	.	.	.	.	.	.	.	
GPSM2	29899	hgsc.bcm.edu	37	1	109465167	109465168	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.S524T	.	.	.	.	.	.	.	
SCN3A	6328	hgsc.bcm.edu	37	2	166032778	166032779	+	Missense_Mutation	DNP	TA	TA	CT	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.DN42ED	.	.	.	.	.	.	.	
PILRB	29990	hgsc.bcm.edu	37	7	99957138	99957139	+	Silent	DNP	CC	CC	GT	novel		TCGA-FV-A2QR-01A-11D-A20W-10	TCGA-FV-A2QR-11A-11D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34b26fff-981d-4f15-b59f-68a9208af0f5	39ada55b-dcea-4e2e-81da-374a3020c56e	.	.	.	.	.	p.L315L	.	.	.	.	.	.	.	
