Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107547843	107547843	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCA1	NM_005502	exon49	c.G6479C	p.G2160A	.	.	60	7	84	0	.	1016
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43406411	43406411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABCC10	NM_001198934	exon8	c.G2005A	p.A669T	.	.	103	19	41	0	.	96
ABHD5	51099	bcgsc.ca	37	3	43753270	43753270	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ABHD5	NM_016006	exon4	c.A576G	p.R192R	.	.	83	5	145	0	.	91
ADAM8	101	broad.mit.edu;ucsc.edu	37	10	135084292	135084292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ADAM8	NM_001164489	exon15	c.G1582A	p.E528K	.	.	77	11	65	1	.	90
ADAMTS6	11174	bcgsc.ca	37	5	64595819	64595819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ADAMTS6	NM_197941	exon10	c.T1363C	p.F455L	.	.	51	4	56	0	.	226
ADCY9	115	broad.mit.edu	37	16	4016936	4016936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ADCY9	NM_001116	exon11	c.C2902T	p.P968S	.	.	51	3	66	0	.	139
ADRBK2	157	bcgsc.ca	37	22	26114335	26114335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ADRBK2	NM_005160	exon19	c.A1778G	p.E593G	.	.	112	5	71	1	.	955
ALDOB	229	bcgsc.ca	37	9	104187296	104187296	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ALDOB	NM_000035	exon8	c.T828C	p.S276S	.	.	45	4	59	0	.	226
ALOX12B	242	broad.mit.edu;bcgsc.ca	37	17	7980386	7980386	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ALOX12B	NM_001139	exon9	c.G1197A	p.L399L	.	.	60	4	53	0	.	226
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	37506693	37506693	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ANKRD30A	NM_052997	exon33	c.T2986C	p.L996L	.	.	217	46	279	0	.	161
AP4B1-AS1	100287722	ucsc.edu	37	1	114443785	114443785	+	RNA	SNP	A	A	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	66	43	76	0	.	.
APBB1	322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6422643	6422643	+	Missense_Mutation	SNP	C	C	G	rs142613637		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	APBB1	NM_001164	exon10	c.G1520C	p.R507P	.	.	38	16	48	0	C|1.000;G|0.000	136
AQP6	363	broad.mit.edu	37	12	50369249	50369249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	AQP6	NM_001652	exon4	c.T644C	p.V215A	.	.	49	3	63	0	.	90
ASIC5	51802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156784657	156784657	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_017419	exon2	c.A290T	p.E97V	.	.	104	19	99	0	.	.
ASMTL	8623	broad.mit.edu	37	X	1531640	1531640	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ASMTL	NM_004192	exon12	c.G1630A	p.E544K	.	.	258	4	296	0	.	62
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124361670	124361670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ATAD2	NM_014109	exon14	c.C1661T	p.T554I	.	.	59	31	51	0	.	92
ATG4D	84971	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10657547	10657547	+	Missense_Mutation	SNP	C	C	T	rs142336391	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ATG4D	NM_032885	exon4	c.C526T	p.P176S	.	.	74	15	44	0	A|0.000;C|0.999;T|0.001	90
ATP8B4	79895	bcgsc.ca	37	15	50158655	50158655	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ATP8B4	NM_024837	exon26	c.T3054C	p.T1018T	.	.	64	4	63	0	.	140
BAP1	8314	hgsc.bcm.edu	37	3	52442000	52442062	+	In_Frame_Del	DEL	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	CCTTCATGCGACTCAGGGTGGGTCCCAGGTCCACGCTGCTGCAGTTCAGGAGCACGCTCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	BAP1	NM_004656	exon5	c.287_349del	p.96_117del	.	.	31	0	113	0	.	1032
BBS9	27241	broad.mit.edu;bcgsc.ca	37	7	33545255	33545255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	BBS9	NM_198428	exon20	c.2296delT	p.L766fs	.	.	30	7	42	0	.	230
BLOC1S1	2647	broad.mit.edu	37	12	56109926	56109926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	BLOC1S1	NM_001487	exon1	c.T91C	p.S31P	.	.	58	3	53	0	.	90
C10orf12	26148	broad.mit.edu;bcgsc.ca	37	10	98741247	98741247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	C10orf12	NM_015652	exon1	c.T100C	p.F34L	.	.	79	4	126	0	.	92
C1orf101	257044	broad.mit.edu	37	1	244653765	244653765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	C1orf101	NM_173807	exon6	c.T343C	p.F115L	.	.	237	4	278	1	.	154
CCDC134	79879	broad.mit.edu	37	22	42209386	42209386	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CCDC134	NM_024821	exon5	c.T429C	p.G143G	.	.	154	4	116	0	.	92
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	103392139	103392139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001146197	exon4	c.C10908A	p.F3636L	.	.	192	76	177	0	.	.
CDCA7	83879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174231134	174231134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CDCA7	NM_031942	exon8	c.G1159A	p.E387K	.	.	94	28	88	0	.	91
CDR2	1039	broad.mit.edu	37	16	22358490	22358490	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CDR2	NM_001802	exon5	c.G1161A	p.K387K	.	.	106	3	114	0	.	91
CEACAM5	1048	broad.mit.edu	37	19	42219656	42219656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CEACAM5	NM_004363	exon4	c.A791G	p.N264S	.	.	207	4	155	0	.	92
CHRFAM7A	89832	broad.mit.edu	37	15	30663368	30663368	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CHRFAM7A	NM_139320	exon8	c.T543C	p.S181S	.	.	934	9	939	2	.	45
CHRNA10	57053	hgsc.bcm.edu	37	11	3688934	3688934	+	Silent	SNP	G	G	A	rs147957618		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CHRNA10	NM_020402	exon4	c.C423T	p.A141A	.	.	11	7	0	0	G|0.995;A|0.005	91
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71043685	71043685	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLEC4F	NM_173535	exon4	c.T828C	p.N276N	.	.	208	110	250	0	.	95
CLK1	1195	bcgsc.ca	37	2	201721660	201721660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLK1	NM_001162407	exon8	c.T1007C	p.I336T	.	.	103	5	121	0	.	784
CLK4	57396	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178050338	178050338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CLK4	NM_020666	exon2	c.A80G	p.H27R	.	.	127	70	108	1	.	359
CMAS	55907	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	22199469	22199479	+	Frame_Shift_Del	DEL	GCGGCCCTGGA	GCGGCCCTGGA	-	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	GCGGCCCTGGA	GCGGCCCTGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CMAS	NM_018686	exon1	c.232_242del	p.78_81del	.	.	83	39	24	0	.	93
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101476143	101476143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	COX15	NM_004376	exon8	c.A1063G	p.M355V	.	.	31	4	30	0	.	227
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	68658311	68658311	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CPA6	NM_020361	exon1	c.C54A	p.C18X	.	.	75	28	88	0	.	92
CSF2	1437	bcgsc.ca	37	5	131409805	131409805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CSF2	NM_000758	exon2	c.T191C	p.F64S	.	.	46	4	111	0	.	90
CSPG4	1464	bcgsc.ca	37	15	75982072	75982072	+	Missense_Mutation	SNP	G	G	A	rs77681934	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CSPG4	NM_001897	exon3	c.C1334T	p.A445V	.	.	138	13	107	2	G|0.918;A|0.082	229
CSPG4	1464	bcgsc.ca	37	15	75982085	75982085	+	Missense_Mutation	SNP	C	C	T	rs79463888	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	CSPG4	NM_001897	exon3	c.G1321A	p.E441K	.	.	119	9	113	2	C|0.878;T|0.122	229
DCAF8L2	347442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	27765469	27765469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DCAF8L2	NM_001136533	exon1	c.C457T	p.P153S	.	.	68	60	86	0	.	42
DCSTAMP	81501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	105361092	105361092	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001257317	exon2	c.G312T	p.G104G	.	.	155	25	121	0	.	.
DFNA5	1687	broad.mit.edu	37	7	24784360	24784360	+	Silent	SNP	C	C	T	rs191022542		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DFNA5	NM_001127453	exon3	c.G225A	p.S75S	.	.	51	3	44	0	C|0.999;T|0.000	91
DGAT1	8694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145540267	145540267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_012079	exon17	c.G1417A	p.V473I	.	.	69	40	37	0	.	.
DNAH5	1767	bcgsc.ca	37	5	13829795	13829795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DNAH5	NM_001369	exon38	c.C6268T	p.R2090W	.	.	95	6	80	0	.	182
DOCK9	23348	broad.mit.edu	37	13	99515630	99515630	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DOCK9	NM_001130049	exon31	c.T3462C	p.A1154A	.	.	416	6	315	0	.	90
DPCR1	135656	broad.mit.edu	37	6	30917520	30917520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DPCR1	NM_080870	exon2	c.A1279G	p.T427A	.	.	184	6	118	1	.	90
DPYSL5	56896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27156166	27156166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DPYSL5	NM_001253724	exon7	c.C755T	p.S252L	.	.	118	55	119	0	.	92
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096333	167096333	+	Silent	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DUSP27	NM_001080426	exon5	c.G1965C	p.G655G	.	.	92	17	69	0	.	71
DYNC1H1	1778	broad.mit.edu;mdanderson.org	37	14	102510668	102510668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DYNC1H1	NM_001376	exon71	c.G12742T	p.A4248S	.	.	24	3	49	0	.	98
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71892431	71892431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	DYSF	NM_001130987	exon47	c.A5314G	p.I1772V	.	.	59	33	48	0	.	158
ECI1	1632	broad.mit.edu	37	16	2294415	2294415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ECI1	NM_001178029	exon4	c.G433A	p.A145T	.	.	68	4	65	0	.	90
EDA	1896	broad.mit.edu	37	X	68836540	68836540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	EDA	NM_001005613	exon1	c.G388T	p.G130W	.	.	115	3	83	0	.	195
EDEM2	55741	bcgsc.ca	37	20	33722732	33722732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	EDEM2	NM_018217	exon6	c.A511G	p.M171V	.	.	56	4	44	0	.	90
ENTHD2	146705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79203158	79203158	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_144679	exon12	c.C1148G	p.P383R	.	.	101	40	138	0	.	.
ERCC1	2067	broad.mit.edu	37	19	45916825	45916825	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ERCC1	NM_202001	exon8	c.A953G	p.H318R	.	.	106	4	94	0	.	659
ERO1LB	56605	bcgsc.ca	37	1	236413264	236413264	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ERO1LB	NM_019891	exon5	c.T352C	p.L118L	.	.	90	4	102	0	.	90
ETV3L	440695	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157069139	157069139	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ETV3L	NM_001004341	exon2	c.C90T	p.A30A	.	.	93	15	96	1	.	228
FADS6	283985	hgsc.bcm.edu	37	17	72889676	72889677	+	In_Frame_Ins	INS	-	-	GGCTCCGTAGGTTCCATC	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FADS6	NM_178128	exon1	c.18_19insGATGGAACCTACGGAGCC	p.P6delinsPMEPTEP	.	.	45	31	31	0	.	22
FAIM3	9214	hgsc.bcm.edu	37	1	207083133	207083133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FAIM3	NM_005449	exon6	c.C922A	p.P308T	.	.	8	7	0	0	.	90
FAM153B	202134	broad.mit.edu	37	5	175528068	175528068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FAM153B	NM_001265615	exon10	c.A350G	p.E117G	.	.	348	6	302	2	.	69
FAM171B	165215	bcgsc.ca	37	2	187559050	187559050	+	Silent	SNP	A	A	G	rs75768569		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FAM171B	NM_177454	exon1	c.A150G	p.Q50Q	.	.	35	5	34	2	A|0.500;G|0.500	141
FAM182B	728882	broad.mit.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	109	4	14	0	.	.
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FANK1	NM_145235	exon1	c.C10T	p.Q4X	.	.	60	7	8	0	.	91
FCGBP	8857	broad.mit.edu	37	19	40424353	40424353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FCGBP	NM_003890	exon4	c.A1850G	p.D617G	.	.	58	5	51	0	.	98
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123325033	123325033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FGFR2	NM_000141	exon3	c.C295T	p.P99S	.	.	78	44	75	0	.	2607
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153896719	153896719	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FHDC1	NM_033393	exon11	c.G2276A	p.S759N	.	.	78	17	67	0	.	136
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	99643072	99643072	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FILIP1L	NM_182909	exon5	c.605+2T>C	.	.	.	192	37	189	0	.	45
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152327575	152327575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FLG2	NM_001014342	exon3	c.G2687A	p.G896D	.	.	162	30	152	0	.	151
FRAS1	80144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79366872	79366872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	FRAS1	NM_001166133	exon42	c.G5862C	p.K1954N	.	.	148	21	148	0	.	68
GPR174	84636	broad.mit.edu	37	X	78426603	78426603	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	GPR174	NM_032553	exon1	c.T99C	p.G33G	.	.	199	4	206	0	.	130
GPT2	84706	broad.mit.edu	37	16	46952641	46952641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	GPT2	NM_133443	exon8	c.C1009T	p.H337Y	.	.	28	3	42	0	.	92
HDAC7	51564	ucsc.edu	37	12	48183685	48183685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HDAC7	NM_015401	exon17	c.T2002C	p.W668R	.	.	35	4	18	0	.	289
HERC4	26091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	69797855	69797855	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HERC4	NM_022079	exon5	c.C458G	p.S153C	.	.	125	27	158	0	.	659
HIST1H2BK	85236	broad.mit.edu	37	6	27114390	27114390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HIST1H2BK	NM_080593	exon1	c.T188C	p.M63T	.	.	212	5	138	1	.	68
HK2	3099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	75113781	75113781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HK2	NM_000189	exon15	c.C2200T	p.L734F	.	.	51	27	49	0	.	252
HNRNPKP3	399881	broad.mit.edu;ucsc.edu	37	11	43283803	43283803	+	RNA	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	21	6	11	0	.	.
HOXB3	3213	ucsc.edu;bcgsc.ca	37	17	46628059	46628059	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HOXB3	NM_002146	exon4	c.T933C	p.P311P	.	.	24	4	24	0	.	514
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18333521	18333521	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HPS5	NM_181507	exon3	c.A159G	p.G53G	.	.	59	12	57	0	.	133
HSPH1	10808	bcgsc.ca	37	13	31725829	31725829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HSPH1	NM_006644	exon6	c.A580G	p.K194E	.	.	65	4	105	1	.	90
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HTR6	NM_000871	exon3	c.G1045T	p.A349S	.	.	48	9	27	2	.	91
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3224125	3224125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HTT	NM_002111	exon54	c.C7381T	p.R2461C	.	.	64	24	61	1	.	281
HUWE1	10075	bcgsc.ca	37	X	53600735	53600735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	HUWE1	NM_031407	exon47	c.T6287C	p.V2096A	.	.	106	5	111	1	.	280
IGSF11	152404	bcgsc.ca	37	3	118624562	118624562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	IGSF11	NM_001015887	exon5	c.A584G	p.Q195R	.	.	55	4	41	0	.	90
IGSF5	150084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	41137531	41137531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	IGSF5	NM_001080444	exon3	c.G170T	p.R57L	.	.	62	23	49	0	.	68
INPP5B	3633	bcgsc.ca	37	1	38354015	38354015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	INPP5B	NM_005540	exon10	c.T799C	p.F267L	.	.	68	4	78	0	.	227
KCNN1	3780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18092829	18092829	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KCNN1	NM_002248	exon5	c.G810A	p.T270T	.	.	100	17	35	0	.	22
KCNQ4	9132	broad.mit.edu	37	1	41296888	41296888	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KCNQ4	NM_004700	exon10	c.C1425T	p.S475S	.	.	135	5	141	0	.	90
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7755291	7755291	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KDM6B	NM_001080424	exon18	c.C4188T	p.F1396F	.	.	89	14	79	0	.	205
KIAA1109	84162	bcgsc.ca	37	4	123200970	123200970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KIAA1109	NM_015312	exon49	c.T8632C	p.Y2878H	.	.	84	4	77	1	.	80
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56079097	56079097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	KTN1	NM_004986	exon2	c.G331T	p.V111F	.	.	157	49	119	0	.	1147
L1TD1	54596	broad.mit.edu	37	1	62672891	62672891	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	L1TD1	NM_001164835	exon4	c.A591G	p.R197R	.	.	98	4	127	0	.	92
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	17579110	17579110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	LAP3	NM_015907	exon1	c.G22A	p.A8T	.	.	76	13	17	0	.	90
LIG3	3980	broad.mit.edu;ucsc.edu	37	17	33318795	33318795	+	Missense_Mutation	SNP	C	C	T	rs201706144		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	LIG3	NM_013975	exon6	c.C1147T	p.R383W	.	.	39	4	53	1	.	728
LOC642236	0	bcgsc.ca	37	9	68433511	68433511	+	RNA	SNP	C	C	T	rs202018667		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	335	21	412	21	.	.
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	111	4	121	2	.	.
MAGT1	84061	broad.mit.edu	37	X	77109396	77109396	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MAGT1	NM_032121	exon8	c.922+2T>C	.	.	.	256	5	270	0	.	63
MAP2K1	5604	bcgsc.ca	37	15	66727406	66727406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MAP2K1	NM_002755	exon2	c.A122G	p.E41G	.	.	71	5	63	1	.	978
MAPK6	5597	broad.mit.edu	37	15	52356789	52356789	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MAPK6	NM_002748	exon6	c.A1758G	p.E586E	.	.	270	6	243	1	.	1403
MARCH3	115123	bcgsc.ca	37	5	126253707	126253707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MARCH3	NM_178450	exon2	c.T157C	p.S53P	.	.	55	4	84	0	.	69
MED25	81857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50331706	50331706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MED25	NM_030973	exon4	c.G306T	p.K102N	.	.	86	46	63	0	.	91
MGAT3	4248	broad.mit.edu	37	22	39884400	39884400	+	Missense_Mutation	SNP	G	G	A	rs9611185		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MGAT3	NM_002409	exon2	c.G1048A	p.G350S	.	.	54	3	36	0	.	90
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	13109010	13109010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MPDZ	NM_003829	exon45	c.A5904T	p.L1968F	.	.	59	31	51	0	.	231
MRFAP1	93621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6642727	6642727	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001272053	exon2	c.C138T	p.H46H	.	.	118	89	98	0	.	.
MT1F	4494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56692645	56692645	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MT1F	NM_005949	exon2	c.C87T	p.C29C	.	.	42	25	54	0	.	44
MTFR2	113115	bcgsc.ca	37	6	136552478	136552478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_138419	exon8	c.A1093G	p.M365V	.	.	60	4	77	0	.	.
MUC2	4583	bcgsc.ca	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MUC2	NM_002457	exon30	c.G4729A	p.G1577S	.	.	43	7	55	2	.	90
MUC4	4585	bcgsc.ca	37	3	195507237	195507237	+	Silent	SNP	G	G	A	rs199776180		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MUC4	NM_018406	exon2	c.C11214T	p.S3738S	.	.	132	10	135	3	.	90
MUC4	4585	broad.mit.edu	37	3	195509143	195509143	+	Missense_Mutation	SNP	G	G	A	rs200380706		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	MUC4	NM_018406	exon2	c.C9308T	p.T3103M	.	.	125	6	104	1	G|0.998;A|0.002	90
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1277989	1277989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_002458	exon39	c.G16225A	p.V5409M	.	.	39	10	23	0	.	.
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48595690	48595690	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	N4BP1	NM_153029	exon2	c.T864A	p.S288S	.	.	67	44	98	0	.	22
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3613089	3613089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NLRC3	NM_178844	exon5	c.G1849A	p.E617K	.	.	58	40	21	0	.	96
NSA2	10412	bcgsc.ca	37	5	74065140	74065140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NSA2	NM_001271665	exon3	c.G293A	p.R98Q	.	.	128	6	193	0	.	91
NUDT10	170685	broad.mit.edu	37	X	51076024	51076024	+	Silent	SNP	G	G	A	rs2801626		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NUDT10	NM_153183	exon2	c.G207A	p.E69E	.	.	221	10	174	1	.	90
NUMBL	9253	ucsc.edu	37	19	41173886	41173886	+	Silent	SNP	C	C	T	rs62640392		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NUMBL	NM_004756	exon10	c.G1317A	p.Q439Q	.	.	49	0	28	0	C|0.984;T|0.016	637
NUP155	9631	broad.mit.edu	37	5	37329307	37329307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NUP155	NM_153485	exon16	c.T1798C	p.S600P	.	.	349	7	209	1	.	205
NXF5	55998	broad.mit.edu	37	X	101096894	101096894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	NXF5	NM_032946	exon4	c.A103G	p.S35G	.	.	493	5	556	1	.	204
OPN1LW	5956	ucsc.edu	37	X	153418468	153418468	+	Silent	SNP	G	G	C	rs731614	bycluster	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OPN1LW	NM_020061	exon3	c.G465C	p.V155V	.	.	39	12	212	8	C|1.000;|0.000	108
OR2D3	120775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6942827	6942827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR2D3	NM_001004684	exon1	c.G595T	p.A199S	.	.	264	135	249	0	.	68
OR2T27	403239	ucsc.edu	37	1	248813271	248813271	+	Silent	SNP	C	C	A	rs2802081	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR2T27	NM_001001824	exon1	c.G915T	p.V305V	.	.	203	24	195	11	C|0.968;A|0.032	47
OR4N4	283694	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	22382912	22382912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR4N4	NM_001005241	exon1	c.C440T	p.A147V	.	.	393	26	352	1	.	73
OR51T1	401665	broad.mit.edu;bcgsc.ca	37	11	4904015	4904015	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OR51T1	NM_001004759	exon1	c.T967C	p.L323L	.	.	142	8	135	0	.	115
OSBPL6	114880	bcgsc.ca	37	2	179197380	179197380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	OSBPL6	NM_001201482	exon7	c.A385G	p.K129E	.	.	123	5	101	0	.	69
PABPC3	5042	hgsc.bcm.edu	37	13	25671755	25671755	+	Silent	SNP	G	G	A	rs116223079	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PABPC3	NM_030979	exon1	c.G1419A	p.T473T	.	.	56	6	62	0	G|0.977;A|0.023	72
PABPC3	5042	hgsc.bcm.edu	37	13	25671759	25671759	+	Missense_Mutation	SNP	C	C	T	rs115121649	byfrequency	TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PABPC3	NM_030979	exon1	c.C1423T	p.R475C	.	.	55	6	63	0	C|0.968;T|0.032	72
PARP14	54625	broad.mit.edu	37	3	122399819	122399819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PARP14	NM_017554	exon1	c.A89G	p.Y30C	.	.	93	4	47	0	.	525
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52584506	52584506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PBRM1	NM_018313	exon29	c.T4507C	p.Y1503H	.	.	35	28	49	0	.	575
PELI2	57161	broad.mit.edu	37	14	56755185	56755185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PELI2	NM_021255	exon4	c.T340C	p.F114L	.	.	112	4	83	0	.	91
PHYHD1	254295	broad.mit.edu	37	9	131696337	131696337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PHYHD1	NM_001100877	exon4	c.G316A	p.A106T	.	.	32	3	49	0	.	90
PIK3R4	30849	bcgsc.ca	37	3	130403097	130403097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PIK3R4	NM_014602	exon16	c.G3604A	p.A1202T	.	.	72	4	69	0	.	1471
PIWIL1	9271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130827612	130827612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PIWIL1	NM_004764	exon3	c.G156C	p.Q52H	.	.	218	35	167	0	.	92
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110495324	110495324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PKHD1L1	NM_177531	exon57	c.T9566A	p.V3189E	.	.	134	35	102	0	.	145
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28825786	28825786	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PLB1	NM_153021	exon39	c.C2772T	p.A924A	.	.	29	11	30	0	.	141
PNLIPRP3	119548	bcgsc.ca	37	10	118215277	118215277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PNLIPRP3	NM_001011709	exon5	c.A500G	p.H167R	.	.	59	4	62	0	.	91
POMT2	29954	broad.mit.edu	37	14	77786853	77786853	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	POMT2	NM_013382	exon1	c.T172G	p.W58G	.	.	38	11	19	1	.	91
POSTN	10631	bcgsc.ca	37	13	38151931	38151931	+	Missense_Mutation	SNP	A	A	G	rs185597450		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	POSTN	NM_006475	exon16	c.T1967C	p.V656A	.	.	128	5	223	0	A|0.999;G|0.000	516
PPFIBP1	8496	broad.mit.edu	37	12	27824457	27824457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PPFIBP1	NM_177444	exon14	c.C1291T	p.P431S	.	.	287	5	200	0	.	228
PRKAA1	5562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	40777637	40777637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PRKAA1	NM_006251	exon2	c.G179A	p.R60Q	.	.	271	28	198	0	.	792
PRKAA2	5563	broad.mit.edu	37	1	57158075	57158075	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PRKAA2	NM_006252	exon4	c.T375C	p.S125S	.	.	147	4	113	0	.	885
PRPF38A	84950	bcgsc.ca	37	1	52874313	52874313	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PRPF38A	NM_032864	exon3	c.A363G	p.E121E	.	.	69	4	57	0	.	90
PSMF1	9491	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1106148	1106148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PSMF1	NM_006814	exon2	c.C137T	p.P46L	.	.	90	34	85	1	.	90
PTH2R	5746	bcgsc.ca	37	2	209292983	209292983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PTH2R	NM_005048	exon2	c.A133G	p.K45E	.	.	69	4	78	0	.	502
PZP	5858	broad.mit.edu	37	12	9309827	9309827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	PZP	NM_002864	exon28	c.A3494G	p.K1165R	.	.	184	5	113	0	.	157
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53607025	53607025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RARG	NM_000966	exon9	c.C1021T	p.R341C	.	.	67	35	36	0	.	722
RBAK	57786	broad.mit.edu	37	7	5104794	5104794	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RBAK	NM_001204456	exon6	c.T1707C	p.C569C	.	.	88	3	89	0	.	653
RBM43	375287	bcgsc.ca	37	2	152107553	152107553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RBM43	NM_198557	exon4	c.A941G	p.E314G	.	.	146	5	169	0	.	90
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108487292	108487292	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RGPD4	NM_182588	exon20	c.T2832C	p.D944D	.	.	1165	178	1081	1	.	2
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93118817	93118817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RIN3	NM_024832	exon6	c.C1423T	p.P475S	.	.	28	23	57	0	.	522
RNASE9	390443	broad.mit.edu	37	14	21024709	21024709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	RNASE9	NM_001110359	exon5	c.A535G	p.M179V	.	.	230	4	167	1	.	70
RRN3P2	653390	broad.mit.edu;bcgsc.ca	37	16	29113397	29113397	+	RNA	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	144	26	175	0	.	.
S100A7	6278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153430321	153430321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	S100A7	NM_002963	exon3	c.G267T	p.Q89H	.	.	199	35	199	0	.	91
SAAL1	113174	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18127543	18127543	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SAAL1	NM_138421	exon1	c.G46C	p.E16Q	.	.	19	6	17	0	.	90
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	15858388	15858388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SAMSN1	NM_001256370	exon9	c.G1171T	p.D391Y	.	.	149	37	137	0	.	94
SCN4A	6329	bcgsc.ca	37	17	62018294	62018294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SCN4A	NM_000334	exon24	c.A5348G	p.E1783G	.	.	65	4	85	1	.	93
SCN7A	6332	bcgsc.ca	37	2	167334114	167334114	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SCN7A	NM_002976	exon2	c.A93G	p.E31E	.	.	158	5	167	0	.	67
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139370175	139370175	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_014866	exon3	c.G1893T	p.V631V	.	.	45	33	66	0	.	.
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	109315748	109315748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SESN1	NM_014454	exon6	c.G1037T	p.R346L	.	.	54	17	85	0	.	227
SGPL1	8879	broad.mit.edu;bcgsc.ca	37	10	72604395	72604395	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SGPL1	NM_003901	exon3	c.A193G	p.S65G	.	.	43	5	46	0	.	226
SH2D3A	10045	broad.mit.edu	37	19	6760881	6760881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SH2D3A	NM_005490	exon3	c.T187C	p.F63L	.	.	121	4	94	0	.	290
SH3BP4	23677	broad.mit.edu	37	2	235950402	235950402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SH3BP4	NM_014521	exon4	c.T989C	p.V330A	.	.	52	3	64	2	.	94
SH3GLB1	51100	hgsc.bcm.edu	37	1	87170595	87170595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SH3GLB1	NM_001206652	exon1	c.G13A	p.D5N	.	.	13	8	4	0	.	90
SIRT6	51548	broad.mit.edu	37	19	4182533	4182533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SIRT6	NM_016539	exon1	c.T4C	p.S2P	.	.	248	7	100	0	.	227
SLC16A1	6566	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113471853	113471853	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC16A1	NM_001166496	exon2	c.T78C	p.A26A	.	.	30	5	37	0	.	514
SLC17A6	57084	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22399124	22399124	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC17A6	NM_020346	exon12	c.G1587T	p.G529G	.	.	128	36	145	1	.	580
SLC26A8	116369	broad.mit.edu	37	6	35923107	35923107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC26A8	NM_052961	exon17	c.T2054C	p.L685P	.	.	302	5	167	1	.	92
SLC35C1	55343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45832329	45832329	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLC35C1	NM_018389	exon2	c.G538A	p.G180S	.	.	54	17	30	0	.	90
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133654650	133654650	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLCO2A1	NM_005630	exon13	c.C1782T	p.C594C	.	.	118	33	115	0	.	90
SLITRK1	114798	broad.mit.edu	37	13	84455022	84455022	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SLITRK1	NM_052910	exon1	c.C621T	p.I207I	.	.	199	4	135	1	.	94
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	17877588	17877588	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SMC6	NM_001142286	exon22	c.C2500T	p.R834X	.	.	111	18	139	0	.	292
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2302995	2302995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SNX8	NM_013321	exon7	c.C785A	p.A262E	.	.	36	16	41	0	.	290
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21470288	21470288	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SP4	NM_003112	exon3	c.G1505C	p.S502T	.	.	172	94	143	0	.	95
SRRM5	100170229	broad.mit.edu;bcgsc.ca	37	19	44117754	44117754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001145641	exon1	c.A1481G	p.E494G	.	.	70	4	47	0	.	.
SSR4	6748	broad.mit.edu	37	X	153063557	153063557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SSR4	NM_001204526	exon6	c.T416C	p.I139T	.	.	118	9	129	2	.	130
STARD7	56910	broad.mit.edu;mdanderson.org	37	2	96874004	96874004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STARD7	NM_020151	exon1	c.C169T	p.L57F	.	.	56	11	39	0	.	68
STIM1	6786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4076832	4076832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STIM1	NM_003156	exon4	c.C462A	p.F154L	.	.	123	17	112	0	.	91
STX4	6810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31045531	31045531	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	STX4	NM_001272096	exon4	c.C111T	p.L37L	.	.	60	32	75	0	.	90
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67925241	67925241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	SUV420H1	NM_017635	exon11	c.T2572G	p.L858V	.	.	178	101	135	0	.	228
TACC2	10579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123843951	123843951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TACC2	NM_206862	exon4	c.G1936T	p.G646W	.	.	30	16	32	0	.	296
TCEA3	6920	ucsc.edu;bcgsc.ca	37	1	23710871	23710871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_003196	exon10	c.G1006A	p.V336I	.	.	42	4	43	0	.	.
TCEB3	6924	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24078281	24078281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TCEB3	NM_003198	exon4	c.A1264G	p.M422V	.	.	43	31	62	0	.	91
TEKT4P2	100132288	broad.mit.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T	rs71263208		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	.	.	.	.	.	.	25	6	8	0	C|0.500;T|0.500	.
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105885897	105885897	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TGFBRAP1	NM_004257	exon11	c.C2238T	p.T746T	.	.	110	40	90	0	.	91
TGM3	7053	broad.mit.edu;bcgsc.ca	37	20	2315852	2315852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TGM3	NM_003245	exon11	c.T1733C	p.V578A	.	.	114	5	97	0	.	139
THADA	63892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	43458154	43458154	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	THADA	NM_001083953	exon38	c.T5795G	p.L1932R	.	.	132	65	104	0	.	228
TMEM145	284339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42820695	42820695	+	Missense_Mutation	SNP	G	G	A	rs117101875		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TMEM145	NM_173633	exon9	c.G709A	p.E237K	.	.	108	12	73	0	G|0.999;A|0.001	90
TNXB	7148	broad.mit.edu	37	6	32062914	32062914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TNXB	NM_019105	exon4	c.G2297A	p.R766Q	.	.	91	3	56	0	.	90
TRHDE	29953	broad.mit.edu	37	12	73050709	73050709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TRHDE	NM_013381	exon18	c.A2852G	p.Y951C	.	.	193	3	158	0	.	93
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64698610	64698610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TRIP4	NM_016213	exon6	c.A779G	p.E260G	.	.	113	24	98	0	.	188
TTBK1	84630	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	43226802	43226802	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TTBK1	NM_032538	exon11	c.G1043C	p.G348A	.	.	116	11	70	0	.	353
TXK	7294	bcgsc.ca	37	4	48106936	48106936	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	TXK	NM_003328	exon6	c.A483G	p.E161E	.	.	205	6	206	0	.	521
UBE2B	7320	bcgsc.ca	37	5	133712381	133712381	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UBE2B	NM_003337	exon3	c.A147G	p.E49E	.	.	48	4	78	0	.	659
UBE2S	27338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55918294	55918294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UBE2S	NM_014501	exon2	c.C40T	p.R14C	.	.	86	16	76	0	.	226
UBXN7	26043	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196089289	196089289	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UBXN7	NM_015562	exon9	c.G1104A	p.E368E	.	.	70	39	80	0	.	71
UFL1	23376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96986605	96986605	+	Silent	SNP	C	C	T	rs199861765		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_015323	exon10	c.C1077T	p.S359S	.	.	81	17	136	0	C|0.999;T|0.000	.
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216495239	216495239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_007123	exon9	c.A1630G	p.T544A	.	.	121	92	172	0	.	115
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	215932017	215932017	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	USH2A	NM_206933	exon58	c.C11309G	p.S3770X	.	.	82	12	94	0	.	115
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	101736252	101736253	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	UTP20	NM_014503	exon33	c.4130_4131insAC	p.V1377fs	.	.	110	51	81	0	.	155
WNK2	65268	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	96051838	96051838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	WNK2	NM_006648	exon19	c.A4802G	p.D1601G	.	.	15	7	19	0	.	765
ZIM3	114026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57646911	57646911	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZIM3	NM_052882	exon5	c.C794G	p.S265C	.	.	224	31	181	1	.	92
ZNF121	7675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9677428	9677428	+	Missense_Mutation	SNP	A	A	G	rs144655023		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF121	NM_001008727	exon4	c.T361C	p.C121R	.	.	162	93	148	0	A|1.000;G|0.000	91
ZNF248	57209	bcgsc.ca	37	10	38120915	38120915	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF248	NM_021045	exon6	c.A1368G	p.R456R	.	.	93	4	100	0	.	91
ZNF551	90233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58199625	58199625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF551	NM_138347	exon3	c.A1982G	p.H661R	.	.	71	14	50	0	.	91
ZNF578	147660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53014990	53014990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001099694	exon6	c.G1356T	p.E452D	.	.	128	41	89	0	.	.
ZNF655	79027	bcgsc.ca	37	7	99170382	99170382	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF655	NM_001085368	exon4	c.T756C	p.C252C	.	.	144	5	144	1	.	91
ZNF658	26149	broad.mit.edu	37	9	40772354	40772354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF658	NM_033160	exon5	c.C2921A	p.T974K	.	.	89	52	216	0	.	45
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149152627	149152627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZNF777	NM_015694	exon2	c.G487C	p.D163H	.	.	72	31	60	0	.	136
ZNF814	730051	broad.mit.edu	37	19	58385411	58385411	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001144989	exon3	c.A1347G	p.G449G	.	.	147	4	142	0	.	.
ZNF814	730051	mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	376	132	189	3	.	.
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	332	90	181	1	.	.
ZNF841	284371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52570784	52570784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_001136499	exon7	c.G351T	p.M117I	.	.	273	40	235	0	.	.
ZNF845	91664	broad.mit.edu	37	19	53856702	53856702	+	Missense_Mutation	SNP	G	G	A	rs200114728		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_138374	exon4	c.G2774A	p.R925H	.	.	158	21	122	1	.	.
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	G	A	rs201351032		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	.	NM_138374	exon4	c.G2802A	p.K934K	.	.	153	21	120	1	.	.
ZRANB3	84083	bcgsc.ca	37	2	136103126	136103126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZRANB3	NM_032143	exon6	c.A671G	p.H224R	.	.	76	4	171	0	.	658
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58187569	58187569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I0-01A-11D-A22F-10	TCGA-FV-A3I0-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5df489bc-6178-49e4-8a42-506f70300dff	741183d6-2363-4cbf-b5f9-4548e1cab32b	.	ZSCAN4	NM_152677	exon3	c.G56A	p.G19E	.	.	158	88	109	0	.	91
