Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADGB	79747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	147109747	147109747	+	Splice_Site	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_024694	exon33	c.4537+1G>A	.	.	.	53	22	51	0	.	.
ALMS1	7840	broad.mit.edu	37	2	73682334	73682334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ALMS1	NM_015120	exon9	c.T7583C	p.I2528T	.	.	122	5	98	0	.	142
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139917173	139917173	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon31	c.A7227T	p.S2409S	.	.	130	37	121	1	.	185
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139889380	139889380	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKHD1	NM_017747	exon21	c.T3924C	p.C1308C	.	.	165	56	104	0	.	185
ANKRD11	29123	broad.mit.edu	37	16	89357126	89357126	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ANKRD11	NM_001256183	exon6	c.A508C	p.T170P	.	.	66	22	62	32	.	139
APAF1	317	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99060130	99060130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APAF1	NM_181868	exon9	c.C1357A	p.L453I	.	.	183	61	161	1	.	229
APBA2	321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	29398965	29398965	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	APBA2	NM_005503	exon11	c.C1860T	p.S620S	.	.	121	40	101	0	.	90
ATXN1	6310	broad.mit.edu;mdanderson.org	37	6	16327891	16327891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ATXN1	NM_001128164	exon7	c.G651T	p.Q217H	.	.	58	6	71	0	.	93
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107510138	107510138	+	Missense_Mutation	SNP	C	C	T	rs138504832	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	BBX	NM_001142568	exon15	c.C2345T	p.P782L	.	.	230	53	215	0	C|1.000;A|0.000	94
BHLHB9	80823	broad.mit.edu	37	X	102005117	102005117	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	BHLHB9	NM_001142530	exon2	c.A1194G	p.Q398Q	.	.	303	7	259	1	.	132
C9orf64	84267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86571114	86571114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	C9orf64	NM_032307	exon1	c.C302T	p.S101F	.	.	25	10	27	0	.	90
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54417766	54417766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CACNG7	NM_031896	exon2	c.G209T	p.G70V	.	.	127	31	140	0	.	91
CAMLG	819	broad.mit.edu	37	5	134074357	134074357	+	Missense_Mutation	SNP	T	T	G	rs75279757		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CAMLG	NM_001745	exon1	c.T47G	p.V16G	.	.	87	20	83	11	.	90
CAPRIN1	4076	hgsc.bcm.edu;broad.mit.edu	37	11	34112151	34112151	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CAPRIN1	NM_203364	exon14	c.C1480T	p.Q494X	.	.	134	5	136	0	.	91
CDH11	1009	broad.mit.edu	37	16	65026851	65026851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CDH11	NM_001797	exon5	c.G610A	p.G204R	.	.	130	4	146	1	.	852
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85971460	85971460	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CDHR1	NM_001171971	exon14	c.T1542A	p.T514T	.	.	88	24	83	0	.	91
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	180062616	180062617	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CEP350	NM_014810	exon34	c.7376_7377insT	p.K2459fs	.	.	325	154	252	0	.	26
CES1P1	51716	broad.mit.edu	37	16	55794587	55794587	+	RNA	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	.	.	123	8	104	1	.	.
CHL1	10752	broad.mit.edu	37	3	440811	440811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CHL1	NM_006614	exon26	c.A3365G	p.N1122S	.	.	176	5	237	0	.	583
COPG1	22820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128973580	128973580	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_016128	exon6	c.C393A	p.I131I	.	.	45	11	41	0	.	.
CP	1356	broad.mit.edu	37	3	148916289	148916289	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CP	NM_000096	exon9	c.A1578G	p.G526G	.	.	310	6	302	1	.	515
CYP4A22	284541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47609480	47609481	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	CYP4A22	NM_001010969	exon6	c.682_683insT	p.V228fs	.	.	156	47	189	0	.	139
DEPDC1	55635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	68944871	68944874	+	Frame_Shift_Del	DEL	GTAA	GTAA	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	GTAA	GTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DEPDC1	NM_001114120	exon10	c.2065_2068del	p.689_690del	.	.	173	51	209	0	.	90
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	24758722	24758722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DFNA5	NM_001127453	exon4	c.A520G	p.M174V	.	.	27	15	51	0	.	91
DNAH10	196385	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124414218	124414218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH10	NM_207437	exon71	c.T12170C	p.M4057T	.	.	111	38	114	1	.	95
DNAH12	201625	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57454649	57454649	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DNAH12	NM_178504	exon17	c.A2163G	p.E721E	.	.	131	50	114	1	.	47
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	98164998	98164998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	DPYD	NM_000110	exon6	c.C589T	p.P197S	.	.	162	51	145	0	.	278
EDIL3	10085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	83680126	83680126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EDIL3	NM_005711	exon1	c.G67A	p.G23S	.	.	46	15	36	0	.	131
EHMT2	10919	broad.mit.edu	37	6	31848859	31848859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EHMT2	NM_006709	exon26	c.G3208A	p.E1070K	.	.	49	3	54	0	.	91
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095957	143095957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.C1073A	p.T358K	.	.	47	23	32	0	.	1436
EPHA1	2041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143095959	143095959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EPHA1	NM_005232	exon6	c.T1071A	p.D357E	.	.	46	22	32	0	.	1436
ETV5	2119	broad.mit.edu	37	3	185823650	185823650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ETV5	NM_004454	exon2	c.G8A	p.G3E	.	.	238	3	219	1	.	706
EXOSC3	51010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37784995	37784995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EXOSC3	NM_016042	exon1	c.G47A	p.R16K	.	.	42	18	63	1	.	135
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66044982	66044982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	EYS	NM_001142801	exon11	c.C1657A	p.L553I	.	.	143	53	140	0	.	660
FAM127C	441518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134156305	134156305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM127C	NM_001078173	exon1	c.C185T	p.A62V	.	.	160	54	137	0	.	62
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119345814	119345814	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM184A	NM_024581	exon2	c.T324G	p.I108M	.	.	231	73	206	0	.	519
FAM185A	222234	broad.mit.edu	37	7	102390095	102390095	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001145268	exon1	c.C441T	p.P147P	.	.	83	3	63	0	.	.
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149524	34149524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FAM47A	NM_203408	exon1	c.C872G	p.T291R	.	.	136	43	156	0	.	134
FBLN2	2199	broad.mit.edu	37	3	13679185	13679185	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	FBLN2	NM_001004019	exon18	c.C3462T	p.G1154G	.	.	112	3	139	0	.	91
GPR157	80045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	9188904	9188904	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR157	NM_024980	exon1	c.C183T	p.A61A	.	.	43	17	28	0	.	514
GPR87	53836	hgsc.bcm.edu;broad.mit.edu	37	3	151017871	151017871	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	GPR87	NM_023915	exon2	c.G18T	p.T6T	.	.	84	4	84	0	.	153
HAPLN2	60484	broad.mit.edu;mdanderson.org	37	1	156594411	156594411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HAPLN2	NM_021817	exon6	c.A575G	p.D192G	.	.	55	8	29	0	.	90
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	50534990	50534990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HDC	NM_002112	exon12	c.C1456T	p.R486W	.	.	60	17	69	0	.	156
HS6ST3	266722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	97484795	97484795	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HS6ST3	NM_153456	exon2	c.C759T	p.S253S	.	.	89	27	87	0	.	92
HSPA5	3309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128001549	128001549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	HSPA5	NM_005347	exon5	c.T667G	p.F223V	.	.	90	48	101	1	.	230
INO80B	83444	broad.mit.edu	37	2	74684498	74684498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	INO80B	NM_031288	exon5	c.C578T	p.P193L	.	.	103	4	82	0	.	226
ITGB3BP	23421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63974243	63974243	+	Splice_Site	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ITGB3BP	NM_014288	exon3	c.6-2A>G	.	.	.	311	99	256	0	.	90
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65482196	65482196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KAT5	NM_182710	exon7	c.G921T	p.K307N	.	.	162	53	162	0	.	90
KIAA0040	9674	hgsc.bcm.edu	37	1	175129924	175129924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001162895	exon3	c.G226A	p.D76N	.	.	121	5	117	0	.	.
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91522476	91522476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIF20B	NM_016195	exon29	c.A4753G	p.I1585V	.	.	64	15	73	0	.	93
KIF3A	11127	broad.mit.edu	37	5	132069962	132069962	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KIF3A	NM_007054	exon2	c.A215G	p.K72R	.	.	198	4	150	0	.	91
KRTAP9-2	83899	bcgsc.ca	37	17	39383348	39383348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	KRTAP9-2	NM_031961	exon1	c.G442A	p.A148T	.	.	214	69	225	1	.	23
L1CAM	3897	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153136308	153136308	+	Missense_Mutation	SNP	C	C	A	rs202000092	alternate_allele	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	L1CAM	NM_000425	exon6	c.G631T	p.A211S	.	.	218	71	225	1	.	138
LAD1	3898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201351823	201351823	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LAD1	NM_005558	exon8	c.G1431A	p.L477L	.	.	53	16	55	0	.	90
LAMP3	27074	broad.mit.edu	37	3	182871701	182871701	+	Silent	SNP	C	C	T	rs189233925	by1000genomes	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LAMP3	NM_014398	exon2	c.G528A	p.L176L	.	.	448	4	457	0	C|0.999;T|0.000	92
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103870721	103870721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LDB1	NM_001113407	exon5	c.A257G	p.D86G	.	.	91	39	95	0	.	289
LHB	3972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49519808	49519808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LHB	NM_000894	exon2	c.C179A	p.T60N	.	.	88	43	82	0	.	90
LOC81691	0	broad.mit.edu	37	16	20855295	20855295	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LOC81691	NM_030941	exon16	c.C1666T	p.Q556X	.	.	86	3	105	0	.	92
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	99771771	99771771	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LPPR4	NM_014839	exon7	c.T1497C	p.N499N	.	.	96	38	93	0	.	93
LRP10	26020	broad.mit.edu	37	14	23344712	23344712	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	LRP10	NM_014045	exon5	c.A555G	p.R185R	.	.	117	4	146	0	.	90
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	43655030	43655030	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAOB	NM_000898	exon7	c.A724T	p.R242X	.	.	116	44	121	0	.	555
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	161470524	161470524	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MAP3K4	NM_006724	exon3	c.T1220G	p.L407X	.	.	171	64	164	0	.	548
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	99045370	99045370	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MATN2	NM_002380	exon17	c.T2682C	p.S894S	.	.	190	52	141	0	.	24
MIR320A	407037	mdanderson.org	37	8	22102533	22102533	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	.	.	13	3	26	0	.	.
MIR320B2	100313769	ucsc.edu;mdanderson.org	37	1	224444769	224444769	+	RNA	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	.	.	537	141	379	2	.	.
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3249346	3249346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRGPRE	NM_001039165	exon2	c.C684A	p.F228L	.	.	32	13	38	0	.	136
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36923570	36923570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MRPS15	NM_031280	exon6	c.C398G	p.S133C	.	.	121	35	104	0	.	91
MTMR8	55613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63548663	63548663	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MTMR8	NM_017677	exon12	c.C1470A	p.P490P	.	.	35	12	26	0	.	195
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	3227926	3227926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MXRA5	NM_015419	exon7	c.C8318T	p.S2773L	.	.	237	74	276	1	.	136
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26414368	26414368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYO3A	NM_017433	exon19	c.G1945T	p.A649S	.	.	127	34	165	0	.	1007
MYOT	9499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	137219116	137219116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	MYOT	NM_006790	exon7	c.G860T	p.G287V	.	.	185	55	169	0	.	153
NADSYN1	55191	broad.mit.edu	37	11	71193003	71193003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NADSYN1	NM_018161	exon13	c.A1082G	p.D361G	.	.	69	20	63	17	.	92
NEURL4	84461	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7230299	7230299	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NEURL4	NM_001005408	exon4	c.G823C	p.V275L	.	.	28	6	56	0	.	46
NFE2L2	4780	hgsc.bcm.edu;bcgsc.ca	37	2	178098960	178098974	+	In_Frame_Del	DEL	CTATATCTTGCCTCC	CTATATCTTGCCTCC	-	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CTATATCTTGCCTCC	CTATATCTTGCCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NFE2L2	NM_006164	exon2	c.71_85del	p.24_29del	.	.	185	125	128	0	.	90
NKAPP1	158801	ucsc.edu	37	X	119374080	119374080	+	RNA	SNP	C	C	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NKAPP1	.	.	.	.	.	.	290	85	248	0	.	108
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998534	173998534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NLGN1	NM_014932	exon7	c.C1913A	p.P638H	.	.	148	40	166	0	.	231
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635458	2635458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOP56	NM_006392	exon5	c.A434G	p.Q145R	.	.	50	19	60	0	.	92
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117723945	117723945	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NOS1	NM_000620	exon6	c.G1254A	p.S418S	.	.	122	32	157	0	.	154
NXF2	56001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	101615541	101615541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	NXF2	NM_022053	exon23	c.C1862T	p.A621V	.	.	887	73	813	1	.	46
OBSCN	84033	broad.mit.edu	37	1	228487681	228487681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OBSCN	NM_001271223	exon51	c.G13573T	p.E4525X	.	.	33	6	29	0	.	403
OCLN	100506658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68805338	68805338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OCLN	NM_001205254	exon3	c.A421T	p.M141L	.	.	318	111	289	0	.	68
ODC1	4953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	10581663	10581663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ODC1	NM_002539	exon11	c.A1213G	p.I405V	.	.	140	98	118	0	.	69
OGT	8473	broad.mit.edu;bcgsc.ca	37	X	70782704	70782704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OGT	NM_181672	exon16	c.G1985T	p.W662L	.	.	162	6	156	0	.	113
OR5H14	403273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	97868346	97868346	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	OR5H14	NM_001005514	exon1	c.C117A	p.I39I	.	.	565	189	555	0	.	91
PALM3	342979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14167259	14167259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PALM3	NM_001145028	exon4	c.G336T	p.R112S	.	.	56	30	79	0	.	24
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140235699	140235699	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PCDHA10	NM_031859	exon1	c.C66T	p.A22A	.	.	76	52	64	0	.	99
PHF2	5253	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96415567	96415567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PHF2	NM_005392	exon6	c.T709G	p.C237G	.	.	22	9	32	0	.	91
PHGDH	26227	broad.mit.edu	37	1	120283074	120283074	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PHGDH	NM_006623	exon9	c.A1011G	p.E337E	.	.	107	4	97	1	.	91
PIEZO1	9780	broad.mit.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G	rs202139830		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001142864	exon17	c.G2248C	p.E750Q	.	.	44	4	72	0	.	.
PIN4	5303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417258	71417258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PIN4	NM_006223	exon4	c.C353A	p.P118Q	.	.	308	94	270	1	.	130
PLCB3	5331	broad.mit.edu	37	11	64032490	64032490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PLCB3	NM_000932	exon23	c.A2720C	p.N907T	.	.	120	22	119	16	.	228
PLCL1	5334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198949734	198949734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PLCL1	NM_006226	exon2	c.C1493T	p.P498L	.	.	156	114	144	1	.	228
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21142904	21142904	+	RNA	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	.	.	110	39	100	0	.	.
PPEF2	5470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	76794280	76794280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PPEF2	NM_006239	exon12	c.G1506T	p.K502N	.	.	92	21	76	0	.	228
PRPF38B	55119	broad.mit.edu	37	1	109242560	109242560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PRPF38B	NM_018061	exon6	c.A1559G	p.D520G	.	.	185	4	135	1	.	90
PRRC2A	7916	broad.mit.edu	37	6	31593328	31593328	+	Silent	SNP	T	T	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	PRRC2A	NM_004638	exon7	c.T699G	p.G233G	.	.	88	14	86	9	.	156
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73431941	73431941	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RAB6A	NM_002869	exon3	c.A133G	p.T45A	.	.	118	31	113	0	.	227
RGPD3	653489	broad.mit.edu	37	2	107041721	107041721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RGPD3	NM_001144013	exon20	c.G2702T	p.G901V	.	.	457	7	453	0	.	23
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78685014	78685014	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ROBO1	NM_002941	exon23	c.T3282C	p.S1094S	.	.	178	60	178	0	.	67
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55539906	55539906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	RP1	NM_006269	exon4	c.A3464G	p.N1155S	.	.	244	58	196	0	.	102
SAMD7	344658	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169639062	169639062	+	Silent	SNP	A	A	G	rs60401515	byfrequency	TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SAMD7	NM_182610	exon4	c.A147G	p.Q49Q	.	.	156	53	138	0	A|0.982;G|0.018	91
SCN7A	6332	broad.mit.edu	37	2	167273238	167273238	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SCN7A	NM_002976	exon20	c.T3393C	p.G1131G	.	.	219	6	238	0	.	67
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47098921	47098921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SETD2	NM_014159	exon15	c.C6353T	p.T2118I	.	.	96	24	98	0	.	1273
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63059095	63059095	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SLC22A10	NM_001039752	exon2	c.A486T	p.I162I	.	.	115	33	110	0	.	92
SMARCC2	6601	broad.mit.edu	37	12	56558430	56558430	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SMARCC2	NM_003075	exon27	c.T3225G	p.G1075G	.	.	74	17	82	14	.	229
SMC1A	8243	broad.mit.edu	37	X	53423436	53423436	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SMC1A	NM_006306	exon17	c.T2664C	p.N888N	.	.	168	5	176	2	.	232
SMPDL3A	10924	hgsc.bcm.edu	37	6	123110566	123110566	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SMPDL3A	NM_006714	exon1	c.G75T	p.V25V	.	.	20	6	3	0	.	90
SORL1	6653	broad.mit.edu;bcgsc.ca	37	11	121440944	121440944	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SORL1	NM_003105	exon23	c.A3302G	p.N1101S	.	.	88	6	74	0	.	228
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42158099	42158099	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SPTBN5	NM_016642	exon39	c.G6720A	p.E2240E	.	.	70	20	61	0	.	91
SSC5D	284297	broad.mit.edu	37	19	56029354	56029354	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001144950	exon14	c.A3711C	p.T1237T	.	.	222	20	237	11	.	.
SYMPK	8189	broad.mit.edu	37	19	46341780	46341780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	SYMPK	NM_004819	exon10	c.A1181G	p.D394G	.	.	41	3	69	0	.	91
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183659598	183659598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_001080477	exon17	c.T3280C	p.W1094R	.	.	155	48	136	0	.	.
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10398750	10398750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TFAP2A	NM_003220	exon7	c.C1214A	p.A405D	.	.	151	60	150	0	.	91
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	137814010	137814010	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	THSD7B	.	.	.	.	.	.	49	30	78	0	.	75
TNFRSF1A	7132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6443355	6443355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	TNFRSF1A	NM_001065	exon2	c.C95A	p.P32H	.	.	116	43	117	0	.	659
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	.	.	66	32	121	1	.	70225
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	210	15	267	20	.	.
USP8	9101	broad.mit.edu	37	15	50774226	50774226	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	USP8	NM_001128610	exon11	c.C1767A	p.P589P	.	.	67	3	75	0	.	658
VPS36	51028	broad.mit.edu	37	13	52992155	52992155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	VPS36	NM_016075	exon11	c.A877G	p.M293V	.	.	67	4	72	0	.	91
WDR36	134430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	110456277	110456277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	WDR36	NM_139281	exon18	c.C2156A	p.T719N	.	.	104	26	92	0	.	92
ZBTB9	221504	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	6	33424110	33424110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZBTB9	NM_152735	exon2	c.T1233A	p.F411L	.	.	44	8	44	0	.	90
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138764382	138764382	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZC3HAV1	NM_024625	exon4	c.G1305T	p.V435V	.	.	240	112	188	0	.	91
ZFX	7543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24229378	24229378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZFX	NM_003410	exon10	c.C2303A	p.S768Y	.	.	310	111	352	0	.	132
ZNF180	7733	broad.mit.edu	37	19	44981597	44981597	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF180	NM_013256	exon5	c.T1101C	p.H367H	.	.	114	4	104	1	.	92
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178310382	178310382	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF354B	NM_058230	exon5	c.G929C	p.R310T	.	.	203	63	201	0	.	92
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9453375	9453375	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNF559	NM_001202406	exon6	c.A1440C	p.K480N	.	.	87	47	144	0	.	91
ZNFX1	57169	broad.mit.edu	37	20	47879914	47879914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	ZNFX1	NM_021035	exon6	c.T2258C	p.I753T	.	.	123	4	120	0	.	24
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49427419	49427420	+	Missense_Mutation	DNP	CC	CC	AT	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	p.G3690I	.	.	.	.	.	.	.	
KRASP1	3844	bcgsc.ca	37	6	54635522	54635523	+	RNA	DNP	GG	GG	AT	novel		TCGA-FV-A3I1-01A-11D-A22F-10	TCGA-FV-A3I1-10A-01D-A22F-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	992d9566-b1da-421a-bf36-d23382b115fa	5cce4752-30c6-4bc7-8c28-90617e8dcd3b	.	.	.	.	.	.	.	.	.	.	.	.	.	
