Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18777712	18777712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADAMTSL1	NM_001040272	exon19	c.G3485A	p.R1162H	.	.	96	13	68	0	.	230
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49176704	49176704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADCY6	NM_020983	exon2	c.G514T	p.A172S	.	.	52	23	43	0	.	90
ADIPOR1	51094	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202914287	202914287	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ADIPOR1	NM_015999	exon5	c.G441T	p.L147L	.	.	125	47	129	2	.	90
AKAP11	11215	bcgsc.ca	37	13	42876498	42876498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	AKAP11	NM_016248	exon8	c.A3616G	p.I1206V	.	.	59	4	98	0	.	227
ALKBH2	121642	broad.mit.edu	37	12	109527903	109527903	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ALKBH2	NM_001001655	exon3	c.T390C	p.S130S	.	.	61	4	54	0	.	227
ALOX12B	242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7983975	7983975	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ALOX12B	NM_001139	exon6	c.650+1G>T	.	.	.	61	41	83	1	.	226
ANGPT1	284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	108334350	108334350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANGPT1	NM_001199859	exon4	c.A582T	p.L194F	.	.	210	45	129	0	.	521
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241463777	241463777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANKMY1	NM_016552	exon7	c.G1090A	p.V364I	.	.	56	17	65	0	.	90
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	101520844	101520844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ANO4	NM_178826	exon26	c.C2759A	p.P920Q	.	.	73	26	87	0	.	96
ARHGAP23	57636	broad.mit.edu	37	17	36654050	36654050	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ARHGAP23	NM_001199417	exon21	c.A3300G	p.E1100E	.	.	185	7	167	0	.	205
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130219933	130219933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ARHGAP36	NM_144967	exon9	c.G1151T	p.G384V	.	.	80	61	80	0	.	133
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160033981	160033981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ATP10B	NM_025153	exon19	c.C2951A	p.S984Y	.	.	300	166	187	1	.	72
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	360070	360070	+	Splice_Site	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	AXIN1	NM_181050	exon5	c.1020-1G>T	.	.	.	24	12	35	0	.	684
BAHCC1	57597	broad.mit.edu	37	17	79414623	79414623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BAHCC1	.	.	.	.	.	.	34	3	27	0	.	23
BANK1	55024	bcgsc.ca	37	4	102981394	102981394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BANK1	NM_017935	exon12	c.T1996C	p.F666L	.	.	66	4	63	0	.	93
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34118587	34118587	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BMPER	NM_133468	exon13	c.G1197T	p.S399S	.	.	70	21	58	0	.	92
BRD1	23774	hgsc.bcm.edu	37	22	50169766	50169766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BRD1	NM_014577	exon10	c.G2770A	p.A924T	.	.	12	7	7	0	.	91
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93720038	93720038	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	BTBD7	NM_001002860	exon7	c.C1707A	p.I569I	.	.	90	33	72	0	.	91
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953465	111953465	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	C11orf57	NM_001082969	exon6	c.A651C	p.K217N	.	.	147	49	135	1	.	155
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13387893	13387893	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNA1A	NM_001127221	exon23	c.T3875C	p.M1292T	.	.	55	17	48	0	.	67
CACNB4	785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152695776	152695776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CACNB4	NM_000726	exon14	c.T1420A	p.L474M	.	.	180	77	173	0	.	24
CCDC158	339965	broad.mit.edu	37	4	77317563	77317563	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CCDC158	NM_001042784	exon3	c.A147G	p.T49T	.	.	262	6	284	0	.	96
CCT6P3	643180	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs1799112	byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	94	4	73	1	G|0.430;A|0.570	.
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26889956	26889956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CDH9	NM_016279	exon9	c.A1501G	p.K501E	.	.	139	48	95	0	.	99
CDK17	5128	broad.mit.edu;bcgsc.ca	37	12	96694085	96694085	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CDK17	NM_001170464	exon6	c.A597G	p.G199G	.	.	148	6	142	3	.	550
CELSR2	1952	broad.mit.edu	37	1	109803772	109803772	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CELSR2	NM_001408	exon3	c.C4067T	p.P1356L	.	.	96	3	93	0	.	526
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7811224	7811224	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHD3	NM_001005271	exon34	c.G5216T	p.G1739V	.	.	24	15	74	0	.	228
CHRNA3	1136	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78893648	78893648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CHRNA3	NM_000743	exon5	c.C1336A	p.Q446K	.	.	239	90	214	1	.	515
CKM	1158	broad.mit.edu	37	19	45810888	45810888	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CKM	NM_001824	exon7	c.A798G	p.K266K	.	.	64	3	55	0	.	91
CLCA1	1179	bcgsc.ca	37	1	86961226	86961226	+	Missense_Mutation	SNP	T	T	C	rs5744409	byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CLCA1	NM_001285	exon12	c.T1981C	p.Y661H	.	.	126	5	104	1	T|0.984;C|0.016	91
CMYA5	202333	broad.mit.edu	37	5	79033577	79033577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CMYA5	NM_153610	exon2	c.A8989G	p.T2997A	.	.	274	5	221	0	.	77
CNGA3	1261	broad.mit.edu	37	2	99012458	99012458	+	Silent	SNP	C	C	T	rs148949600	alternate_allele	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CNGA3	NM_001298	exon8	c.C825T	p.F275F	.	.	102	3	132	0	C|1.000;G|0.000	96
COL22A1	169044	bcgsc.ca	37	8	139727927	139727927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	COL22A1	NM_152888	exon30	c.A2515G	p.K839E	.	.	55	4	29	0	.	103
CR2	1380	ucsc.edu;bcgsc.ca	37	1	207642179	207642179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CR2	NM_001006658	exon4	c.T669A	p.N223K	.	.	251	94	237	2	.	232
CTSL1	1514	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90342998	90342998	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	CTSL1	NM_145918	exon3	c.G183A	p.L61L	.	.	29	17	53	1	.	93
DAGLA	747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61502408	61502408	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DAGLA	NM_006133	exon10	c.C1062A	p.I354I	.	.	37	11	57	0	.	92
DIDO1	11083	broad.mit.edu	37	20	61528064	61528064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DIDO1	NM_080797	exon7	c.T1873C	p.S625P	.	.	145	5	95	0	.	96
DNMBP	23268	broad.mit.edu;bcgsc.ca	37	10	101656127	101656127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DNMBP	NM_015221	exon10	c.A2948G	p.D983G	.	.	149	6	141	1	.	233
DOCK2	1794	broad.mit.edu	37	5	169503069	169503069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DOCK2	NM_004946	exon47	c.A4847G	p.E1616G	.	.	149	4	66	0	.	97
DTNA	1837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	32418793	32418793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	DTNA	NM_001390	exon12	c.C1257A	p.N419K	.	.	100	28	82	1	.	153
EFCAB4B	84766	broad.mit.edu	37	12	3806151	3806151	+	Silent	SNP	G	G	A	rs148897271		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	EFCAB4B	NM_001144958	exon4	c.C15T	p.D5D	.	.	16	3	48	0	G|0.999;A|0.001	92
EIF4G2	1982	broad.mit.edu;bcgsc.ca	37	11	10822332	10822332	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	EIF4G2	NM_001172705	exon16	c.T1590C	p.P530P	.	.	183	6	178	0	.	91
F11	2160	bcgsc.ca	37	4	187197434	187197434	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	F11	NM_000128	exon7	c.C645T	p.I215I	.	.	126	5	131	0	.	90
FAM86C2P	645332	bcgsc.ca	37	11	67560715	67560715	+	RNA	SNP	C	C	T	rs184691350		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	240	28	185	10	.	.
FANK1	92565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127697046	127697046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FANK1	NM_145235	exon8	c.G776T	p.R259M	.	.	109	41	89	0	.	91
FAT4	79633	bcgsc.ca	37	4	126372706	126372706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FAT4	NM_024582	exon9	c.T10535C	p.V3512A	.	.	148	6	163	0	.	108
FAT4	79633	broad.mit.edu	37	4	126370106	126370106	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FAT4	NM_024582	exon9	c.T7935C	p.G2645G	.	.	60	4	66	0	.	108
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	125072474	125072474	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FER1L6	NM_001039112	exon23	c.C2928G	p.T976T	.	.	71	13	52	0	.	100
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110059526	110059526	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FIG4	NM_014845	exon7	c.647-2A>G	.	.	.	90	54	121	0	.	69
FMNL3	91010	bcgsc.ca	37	12	50055756	50055756	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FMNL3	NM_175736	exon5	c.T445C	p.S149P	.	.	67	4	59	0	.	228
FOXRED1	55572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126145999	126145999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	FOXRED1	NM_017547	exon8	c.A856G	p.I286V	.	.	81	25	94	0	.	90
GCNT4	51301	broad.mit.edu	37	5	74325758	74325758	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GCNT4	NM_016591	exon1	c.A105G	p.R35R	.	.	235	6	154	0	.	93
GIGYF2	26058	broad.mit.edu	37	2	233704656	233704656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GIGYF2	NM_001103147	exon25	c.A2927G	p.E976G	.	.	67	3	56	0	.	28
GLB1L2	89944	bcgsc.ca	37	11	134243628	134243628	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GLB1L2	NM_138342	exon16	c.T1521C	p.N507N	.	.	82	4	58	0	.	25
GLIS3-AS1	84850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	3898836	3898836	+	RNA	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	92	24	77	0	.	.
GMNN	51053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	24785914	24785914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GMNN	NM_001251991	exon7	c.G517C	p.E173Q	.	.	143	40	71	0	.	228
GOSR2	9570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45015970	45015970	+	Silent	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GOSR2	NM_004287	exon6	c.T483G	p.T161T	.	.	68	22	69	0	.	92
GRIP2	80852	broad.mit.edu;ucsc.edu	37	3	14551403	14551403	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GRIP2	.	.	.	.	.	.	39	4	24	0	.	69
GSTZ1	2954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77796672	77796672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	GSTZ1	NM_145870	exon8	c.G494T	p.C165F	.	.	72	27	79	0	.	90
HEBP2	23593	bcgsc.ca	37	6	138727288	138727288	+	Missense_Mutation	SNP	G	G	A	rs3734303	byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HEBP2	NM_014320	exon3	c.G419A	p.R140Q	.	.	108	6	202	0	G|0.996;A|0.004	90
HFM1	164045	broad.mit.edu	37	1	91740338	91740338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HFM1	NM_001017975	exon33	c.A3617G	p.D1206G	.	.	184	7	164	1	.	112
HHAT	55733	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210637852	210637852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HHAT	NM_001170587	exon7	c.G863C	p.G288A	.	.	136	45	149	3	.	92
HNRNPA1	3178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54676893	54676893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HNRNPA1	NM_031157	exon8	c.C782G	p.S261C	.	.	81	34	71	0	.	93
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31778524	31778524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HSPA1L	NM_005527	exon2	c.G1226A	p.G409E	.	.	149	38	104	0	.	230
HTT	3064	bcgsc.ca	37	4	3241717	3241717	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	HTT	NM_002111	exon67	c.A9360G	p.A3120A	.	.	68	4	71	0	.	281
IFITM5	387733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	299408	299408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IFITM5	NM_001025295	exon1	c.C83T	p.A28V	.	.	61	29	35	0	.	514
IGLL1	3543	broad.mit.edu	37	22	23915501	23915501	+	Silent	SNP	G	G	A	rs1064418	bycluster;byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IGLL1	NM_020070	exon3	c.C594T	p.H198H	.	.	92	4	85	0	A|0.001;G|0.999	90
IP6K3	117283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33690707	33690707	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IP6K3	NM_001142883	exon7	c.C1023T	p.G341G	.	.	166	41	107	0	.	240
IRF2	3660	bcgsc.ca	37	4	185339345	185339345	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	IRF2	NM_002199	exon5	c.A387G	p.K129K	.	.	206	6	208	0	.	91
KCNH2	3757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150644109	150644109	+	Silent	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KCNH2	NM_000238	exon14	c.T3186A	p.T1062T	.	.	166	46	98	0	.	94
KDM5B	10765	broad.mit.edu	37	1	202702567	202702567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KDM5B	NM_006618	exon23	c.T3871C	p.W1291R	.	.	177	4	138	1	.	273
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34810943	34810943	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIAA0355	NM_014686	exon3	c.C627T	p.G209G	.	.	95	41	107	0	.	91
KIF14	9928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	200587131	200587131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KIF14	NM_014875	exon2	c.721delC	p.Q241fs	.	.	137	56	157	0	.	140
KRTAP5-4	387267	broad.mit.edu	37	11	1643246	1643246	+	Silent	SNP	A	A	G	rs142004120	by1000genomes	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_001012709	exon1	c.T78C	p.S26S	.	.	88	12	88	6	A|0.886;G|0.114	.
KRTAP5-4	387267	broad.mit.edu	37	11	1643255	1643255	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_001012709	exon1	c.C69T	p.G23G	.	.	92	7	97	2	.	.
KRTAP5-5	439915	broad.mit.edu	37	11	1651533	1651533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KRTAP5-5	NM_001001480	exon1	c.T463C	p.S155P	.	.	68	4	91	2	.	23
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	118298110	118298110	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	KSR2	NM_173598	exon2	c.A220T	p.K74X	.	.	23	8	24	0	.	1449
LCA5	167691	broad.mit.edu	37	6	80197266	80197266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LCA5	NM_001122769	exon8	c.A1549G	p.R517G	.	.	119	4	171	0	.	90
LGI4	163175	broad.mit.edu	37	19	35616247	35616247	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGI4	NM_139284	exon9	c.G1464A	p.L488L	.	.	88	3	93	0	.	91
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	27389536	27389536	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR4	NM_018490	exon18	c.G2734T	p.E912X	.	.	58	17	83	0	.	91
LGR6	59352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202249945	202249945	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LGR6	NM_001017403	exon6	c.C681A	p.T227T	.	.	73	26	44	0	.	160
LIG4	3981	broad.mit.edu	37	13	108863583	108863583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LIG4	NM_206937	exon3	c.T34C	p.S12P	.	.	87	4	126	0	.	659
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54373548	54373548	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LNX1	NM_001126328	exon4	c.G711C	p.G237G	.	.	110	37	115	0	.	229
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141660519	141660519	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LRP1B	NM_018557	exon23	c.G3736T	p.D1246Y	.	.	116	46	120	1	.	311
LRRC36	55282	bcgsc.ca	37	16	67400929	67400929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	LRRC36	NM_018296	exon8	c.A764G	p.H255R	.	.	54	4	75	0	.	90
MAGEC3	139081	bcgsc.ca	37	X	140984650	140984650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAGEC3	NM_177456	exon5	c.T212C	p.L71P	.	.	80	4	77	0	.	555
MAGEE1	57692	broad.mit.edu	37	X	75649863	75649863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAGEE1	NM_020932	exon1	c.G1540T	p.E514X	.	.	51	39	52	1	.	262
MAP2K1	5604	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66729181	66729181	+	Missense_Mutation	SNP	A	A	G	rs121908595		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP2K1	NM_002755	exon3	c.A389G	p.Y130C	.	.	52	16	76	1	.	978
MAP3K15	389840	bcgsc.ca	37	X	19413202	19413202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP3K15	NM_001001671	exon16	c.G2191A	p.G731R	.	.	25	22	29	1	.	335
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135318411	135318411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAP7D3	NM_024597	exon7	c.A728G	p.K243R	.	.	41	4	34	0	.	110
MAPK1	5594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22160192	22160192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MAPK1	NM_002745	exon3	c.C439T	p.H147Y	.	.	135	46	156	0	.	1405
MARS	4141	broad.mit.edu	37	12	57905830	57905830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MARS	NM_004990	exon13	c.T1579C	p.S527P	.	.	147	4	134	0	.	654
MB21D2	151963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	192516790	192516790	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MB21D2	NM_178496	exon2	c.G861A	p.W287X	.	.	79	47	56	0	.	70
MBIP	51562	broad.mit.edu	37	14	36777303	36777303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MBIP	NM_016586	exon7	c.T883C	p.S295P	.	.	83	4	82	0	.	658
MC3R	4159	broad.mit.edu	37	20	54824434	54824434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MC3R	NM_019888	exon1	c.T535C	p.F179L	.	.	159	5	104	0	.	660
MNS1	55329	broad.mit.edu	37	15	56748710	56748710	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MNS1	NM_018365	exon3	c.A235G	p.N79D	.	.	270	5	260	1	.	91
MORC1	27136	broad.mit.edu	37	3	108819281	108819281	+	Silent	SNP	G	G	A	rs201458034		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MORC1	NM_014429	exon5	c.C297T	p.Y99Y	.	.	221	5	177	0	G|0.999;A|0.001	98
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	154007594	154007594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MPP1	NM_002436	exon12	c.A1259G	p.E420G	.	.	44	34	44	1	.	132
MRPL1	65008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	78806454	78806454	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MRPL1	NM_020236	exon4	c.A447G	p.P149P	.	.	127	55	131	0	.	90
MS4A14	84689	broad.mit.edu	37	11	60183096	60183096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MS4A14	NM_001261828	exon6	c.T754C	p.S252P	.	.	214	5	229	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9057255	9057255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MUC16	NM_024690	exon3	c.C30191A	p.T10064K	.	.	90	45	110	0	.	566
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MUC2	NM_002457	exon30	c.C4766A	p.T1589N	.	.	72	4	60	0	.	90
MXRA5	25878	bcgsc.ca	37	X	3235720	3235720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	MXRA5	NM_015419	exon6	c.G6002A	p.R2001H	.	.	58	4	46	0	.	136
NARG2	79664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	60740303	60740303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NARG2	NM_024611	exon11	c.G2161A	p.E721K	.	.	77	31	62	0	.	227
NBPF9	400818	broad.mit.edu	37	1	144815968	144815968	+	Translation_Start_Site	SNP	G	G	A	rs200833830		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	8	2	9	0	.	.
NCOA3	8202	hgsc.bcm.edu	37	20	46279860	46279860	+	Silent	SNP	G	G	A	rs151060280	byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NCOA3	NM_181659	exon20	c.G3786A	p.Q1262Q	.	.	93	8	88	0	G|0.997;A|0.003	229
NCOA3	8202	mdanderson.org	37	20	46279827	46279827	+	Silent	SNP	G	G	A	rs6018623	byfrequency	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NCOA3	NM_181659	exon20	c.G3753A	p.Q1251Q	.	.	119	26	92	0	G|0.861;A|0.139	229
NEFH	4744	hgsc.bcm.edu	37	22	29885586	29885587	+	In_Frame_Ins	INS	-	-	AGTCCCCTGAGAAGGCCA	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NEFH	NM_021076	exon4	c.1957_1958insAGTCCCCTGAGAAGGCCA	p.K653delinsKSPEKAK	.	.	111	70	103	0	.	90
NET1	10276	broad.mit.edu	37	10	5494327	5494327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NET1	NM_001047160	exon5	c.A370G	p.T124A	.	.	123	4	127	1	.	290
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417752	70417752	+	Silent	SNP	G	G	A	rs145217972		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NETO1	NM_001201465	exon9	c.C1086T	p.I362I	.	.	71	21	58	0	G|1.000;A|0.000	94
NID2	22795	broad.mit.edu	37	14	52486831	52486831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NID2	NM_007361	exon13	c.T2740C	p.F914L	.	.	76	4	89	0	.	158
NIPBL	25836	bcgsc.ca	37	5	37044815	37044815	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NIPBL	NM_015384	exon36	c.T6327C	p.C2109C	.	.	120	5	130	0	.	293
NLRP12	91662	broad.mit.edu	37	19	54327154	54327154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NLRP12	NM_144687	exon1	c.T275G	p.V92G	.	.	82	4	84	1	.	211
NOL6	65083	broad.mit.edu	37	9	33467408	33467408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NOL6	NM_022917	exon13	c.A1709G	p.E570G	.	.	94	4	93	0	.	92
NUP210L	91181	broad.mit.edu	37	1	154112366	154112366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NUP210L	NM_001159484	exon5	c.A629G	p.E210G	.	.	271	7	261	0	.	77
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50411919	50411919	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	NUP62	NM_153719	exon3	c.G1146T	p.V382V	.	.	58	22	54	0	.	615
ODF4	146852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	8243610	8243610	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ODF4	NM_153007	exon1	c.C241T	p.Q81X	.	.	41	28	67	0	.	69
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123900948	123900948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR10G8	NM_001004464	exon1	c.T619C	p.S207P	.	.	215	95	246	0	.	92
OR12D2	26529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29364910	29364910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR12D2	NM_013936	exon1	c.C434A	p.T145K	.	.	227	63	160	0	.	69
OR2T11	127077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248790035	248790035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR2T11	NM_001001964	exon1	c.T395C	p.L132P	.	.	88	40	86	0	.	69
OR51S1	119692	broad.mit.edu	37	11	4870405	4870405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR51S1	NM_001004758	exon1	c.A34G	p.S12G	.	.	86	3	84	0	.	72
OR7D4	125958	broad.mit.edu	37	19	9324894	9324894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR7D4	NM_001005191	exon1	c.G620A	p.G207D	.	.	95	4	96	0	.	71
OR9A4	130075	broad.mit.edu	37	7	141619444	141619444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	OR9A4	NM_001001656	exon1	c.T769C	p.F257L	.	.	139	4	96	0	.	91
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	21380718	21380718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_005446	exon12	c.C1138T	p.P380S	.	.	57	19	65	0	.	.
PAX3	5077	broad.mit.edu	37	2	223066123	223066123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PAX3	NM_181461	exon8	c.A1212G	p.X404W	.	.	101	3	112	0	.	1821
PBRM1	55193	broad.mit.edu	37	3	52582220	52582220	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PBRM1	NM_018313	exon30	c.A4608G	p.E1536E	.	.	141	4	98	0	.	575
PDCD10	11235	broad.mit.edu	37	3	167405434	167405434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PDCD10	NM_145860	exon6	c.T443C	p.V148A	.	.	123	5	78	0	.	659
PDE4D	5144	broad.mit.edu	37	5	58272210	58272210	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PDE4D	NM_001104631	exon13	c.T1797C	p.V599V	.	.	328	6	215	1	.	226
PDE8A	5151	broad.mit.edu	37	15	85659284	85659284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PDE8A	NM_002605	exon16	c.G1469A	p.R490Q	.	.	112	4	103	1	.	94
PEX14	5195	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10678434	10678434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PEX14	NM_004565	exon5	c.T344C	p.I115T	.	.	25	9	31	0	.	90
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	114255975	114255975	+	Nonsense_Mutation	SNP	G	G	A	rs61730007	byfrequency;alternate_allele	TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PHTF1	NM_006608	exon7	c.C709T	p.Q237X	.	.	216	72	175	0	G|0.991;T|0.009	91
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75761417	75761417	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PI15	NM_015886	exon6	c.T706A	p.Y236N	.	.	259	65	191	0	.	515
PIWIL4	143689	bcgsc.ca	37	11	94351263	94351263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PIWIL4	NM_152431	exon17	c.T2158C	p.S720P	.	.	160	5	142	0	.	91
PLEKHH2	130271	broad.mit.edu	37	2	43933507	43933507	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PLEKHH2	NM_172069	exon10	c.T1773C	p.S591S	.	.	92	3	101	0	.	92
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	14542851	14542851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	POTEC	NM_001137671	exon1	c.G295T	p.G99C	.	.	268	91	247	0	.	3
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113519285	113519285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP1R3A	NM_002711	exon4	c.G1862A	p.R621K	.	.	309	163	273	0	.	832
PPP2R2B	5521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	146077624	146077624	+	Silent	SNP	C	C	T	rs200884068		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PPP2R2B	NM_181675	exon4	c.G570A	p.K190K	.	.	264	78	169	1	C|0.999;T|0.001	659
PRDM16	63976	broad.mit.edu	37	1	3328405	3328405	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRDM16	NM_022114	exon9	c.C1644T	p.P548P	.	.	37	5	26	0	.	660
PRKAA1	5562	broad.mit.edu	37	5	40767618	40767618	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRKAA1	NM_206907	exon7	c.A816G	p.K272K	.	.	109	5	109	0	.	792
PRKCSH	5589	ucsc.edu;bcgsc.ca	37	19	11548763	11548763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRKCSH	NM_001001329	exon4	c.C263T	p.P88L	.	.	134	47	147	2	.	90
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	1580416	1580416	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	PRPF8	NM_006445	exon15	c.T2035A	p.S679T	.	.	59	21	53	0	.	525
RALA	5898	broad.mit.edu	37	7	39745766	39745766	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RALA	NM_005402	exon5	c.A543G	p.E181E	.	.	364	5	246	0	.	847
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	198436936	198436936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFTN2	NM_144629	exon9	c.C1302A	p.D434E	.	.	170	62	162	0	.	90
RFX5	5993	broad.mit.edu;bcgsc.ca	37	1	151316341	151316341	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RFX5	NM_000449	exon9	c.A573G	p.E191E	.	.	80	4	107	0	.	91
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109695878	109695878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RGAG1	NM_020769	exon3	c.C2033T	p.A678V	.	.	48	38	79	0	.	132
ROBO4	54538	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	124766856	124766856	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ROBO4	NM_019055	exon2	c.C372A	p.V124V	.	.	54	17	62	0	.	92
RPL10	6134	bcgsc.ca	37	X	153628235	153628235	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RPL10	NM_001256577	exon5	c.C282A	p.F94L	.	.	116	96	121	2	.	130
RPL10L	140801	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	47120791	47120791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RPL10L	NM_080746	exon1	c.G149A	p.G50D	.	.	91	35	92	1	.	91
RPTN	126638	broad.mit.edu	37	1	152128708	152128708	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	RPTN	NM_001122965	exon3	c.A867G	p.Q289Q	.	.	281	5	325	0	.	68
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18462375	18462375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SATB1	NM_002971	exon2	c.A85C	p.K29Q	.	.	164	95	134	0	.	228
SAV1	60485	broad.mit.edu	37	14	51132073	51132073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SAV1	NM_021818	exon2	c.T359C	p.V120A	.	.	614	8	684	1	.	658
SCAF11	9169	broad.mit.edu	37	12	46315857	46315857	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SCAF11	NM_004719	exon15	c.G4366A	p.V1456M	.	.	189	5	197	0	.	93
SDAD1	55153	bcgsc.ca	37	4	76892557	76892557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SDAD1	NM_018115	exon9	c.A766G	p.S256G	.	.	119	5	101	0	.	91
SDHAP1	255812	broad.mit.edu	37	3	195711466	195711466	+	RNA	SNP	G	G	T	rs74731410		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	47	9	33	0	G|1.000;|0.000	.
SERAC1	84947	bcgsc.ca	37	6	158579378	158579378	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SERAC1	NM_032861	exon2	c.T18C	p.Y6Y	.	.	64	4	108	1	.	90
SERF2-C15ORF63	0	ucsc.edu	37	15	44093878	44093878	+	RNA	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	61	23	60	0	.	.
SERPINA12	145264	broad.mit.edu;bcgsc.ca	37	14	94964608	94964608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SERPINA12	NM_173850	exon3	c.A127G	p.M43V	.	.	119	5	94	0	.	310
SF3A2	8175	broad.mit.edu	37	19	2245452	2245452	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SF3A2	NM_007165	exon5	c.C253A	p.R85R	.	.	65	8	39	1	.	90
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51169520	51169526	+	Frame_Shift_Del	DEL	CCCACTG	CCCACTG	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	CCCACTG	CCCACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHANK1	NM_016148	exon22	c.5691_5697del	p.1897_1899del	.	.	42	19	33	0	.	153
SHQ1	55164	bcgsc.ca	37	3	72891451	72891451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHQ1	NM_018130	exon3	c.A311G	p.K104R	.	.	94	4	82	0	.	137
SHROOM3	57619	hgsc.bcm.edu	37	4	77661969	77661969	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SHROOM3	NM_020859	exon5	c.G2643A	p.P881P	.	.	9	6	5	0	.	93
SIRT2	22933	broad.mit.edu;bcgsc.ca	37	19	39380761	39380761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SIRT2	NM_012237	exon5	c.G250A	p.G84R	.	.	74	4	68	1	.	226
SKP1	6500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133494206	133494206	+	Silent	SNP	A	A	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SKP1	NM_170679	exon5	c.T396G	p.P132P	.	.	126	44	106	0	.	226
SLFN14	342618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33884944	33884944	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SLFN14	NM_001129820	exon1	c.C138A	p.I46I	.	.	152	61	137	0	.	1
SNX17	9784	broad.mit.edu	37	2	27596123	27596123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SNX17	NM_014748	exon4	c.A266G	p.D89G	.	.	114	5	117	0	.	651
SPATA19	219938	broad.mit.edu	37	11	133712426	133712426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SPATA19	NM_174927	exon5	c.A391G	p.M131V	.	.	121	4	119	1	.	90
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54853192	54853192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SPTBN1	NM_003128	exon12	c.G1465A	p.E489K	.	.	108	42	134	0	.	140
SYNE3	161176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95942020	95942020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	NM_152592	exon1	c.A139G	p.T47A	.	.	26	4	35	0	.	.
SYT14	255928	broad.mit.edu	37	1	210329194	210329194	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	SYT14	NM_001146264	exon8	c.A1428G	p.R476R	.	.	147	5	141	0	.	92
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	52901914	52901914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TCF4	NM_001243226	exon17	c.G1657A	p.V553M	.	.	27	16	45	0	.	523
TEX15	56154	broad.mit.edu	37	8	30704127	30704127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TEX15	NM_031271	exon1	c.A2407G	p.T803A	.	.	87	4	133	1	.	97
TGFB2	7042	broad.mit.edu	37	1	218520094	218520094	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TGFB2	NM_003238	exon1	c.C51T	p.V17V	.	.	55	3	73	0	.	710
TLR8	51311	broad.mit.edu	37	X	12939537	12939537	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TLR8	NM_138636	exon2	c.T2378C	p.V793A	.	.	85	3	74	0	.	629
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138856001	138856001	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM173	NM_198282	exon8	c.G985T	p.V329F	.	.	67	13	33	0	.	69
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7758491	7758491	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMEM88	NM_203411	exon1	c.C99T	p.A33A	.	.	25	18	46	0	.	68
TMPRSS11B	132724	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	69095161	69095161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TMPRSS11B	NM_182502	exon8	c.C760T	p.Q254X	.	.	204	64	197	1	.	91
TOM1L1	10040	broad.mit.edu;bcgsc.ca	37	17	53027430	53027430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TOM1L1	NM_005486	exon14	c.C1313T	p.P438L	.	.	84	5	79	0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577022	7577022	+	Nonsense_Mutation	SNP	G	G	A	rs121913344		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	TP53,brain,glioma,+2	TP53	NM_000546	exon8	c.C916T	p.R306X	.	.	39	21	64	1	.	70225
TRIM51HP	440041	ucsc.edu;bcgsc.ca	37	11	55062219	55062219	+	RNA	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	.	.	.	.	.	.	.	80	31	80	0	.	.
TRPS1	7227	hgsc.bcm.edu;bcgsc.ca	37	8	116617020	116617020	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TRPS1	NM_014112	exon4	c.1176delT	p.S392fs	.	.	216	56	172	2	.	229
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	135786464	135786464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TSC1	NM_000368	exon11	c.1066delA	p.T356fs	.	.	50	28	87	0	.	1906
TTF2	8458	bcgsc.ca	37	1	117619296	117619296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TTF2	NM_003594	exon7	c.A1424G	p.Q475R	.	.	87	5	80	1	.	91
TTN	7273	broad.mit.edu	37	2	179614830	179614830	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TTN	NM_133379	exon46	c.T12297C	p.L4099L	.	.	220	4	260	1	.	636
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	66463919	66463919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	TYW1	NM_018264	exon3	c.G251T	p.G84V	.	.	131	35	89	0	.	91
UBA1	7317	bcgsc.ca	37	X	47058739	47058739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	UBA1	NM_153280	exon4	c.A308G	p.D103G	.	.	94	5	89	0	.	227
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73840324	73840324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	UNC13D	NM_199242	exon1	c.C95T	p.P32L	.	.	21	10	27	0	.	92
USP9Y	8287	broad.mit.edu;bcgsc.ca	37	Y	14968376	14968376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7176A	p.M2392I	.	.	94	76	119	1	.	136
USP9Y	8287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	14968377	14968377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	USP9Y	NM_004654	exon43	c.G7177T	p.V2393L	.	.	92	75	118	0	.	136
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82836955	82836955	+	Silent	SNP	T	T	A	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	VCAN	NM_004385	exon8	c.T8133A	p.A2711A	.	.	94	27	88	0	.	238
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116955172	116955172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	WNT2	NM_003391	exon3	c.G541A	p.D181N	.	.	354	94	195	0	.	1011
XRCC4	7518	broad.mit.edu	37	5	82649027	82649027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	XRCC4	NM_022406	exon8	c.A977G	p.N326S	.	.	394	5	272	1	.	229
ZMAT1	84460	broad.mit.edu	37	X	101138624	101138624	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZMAT1	NM_001011657	exon7	c.A1775G	p.K592R	.	.	142	4	136	0	.	131
ZNF410	57862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74363143	74363143	+	Silent	SNP	G	G	A	rs150263864		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF410	NM_001242924	exon5	c.G345A	p.P115P	.	.	122	33	100	0	G|1.000;A|0.000	91
ZNF618	114991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116731402	116731402	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZNF618	NM_133374	exon2	c.C39T	p.D13D	.	.	20	16	30	0	.	22
ZPLD1	131368	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	102157387	102157387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R2-01A-11D-A22F-10	TCGA-FV-A3R2-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b9098b7c-eab0-4ef5-b968-8d3024bf32f7	3600db40-c4e6-463b-89f9-a95454c88e2b	.	ZPLD1	NM_175056	exon2	c.C104T	p.A35V	.	.	183	59	123	1	.	72
