Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACOT2	10965	broad.mit.edu	37	14	74041658	74041658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ACOT2	NM_006821	exon3	c.A893G	p.E298G	.	.	280	5	341	1	.	91
ACTR1B	10120	ucsc.edu;bcgsc.ca	37	2	98274501	98274501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ACTR1B	NM_005735	exon8	c.A830G	p.E277G	.	.	38	5	42	0	.	91
ADA	100	bcgsc.ca	37	20	43251681	43251681	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ADA	NM_000022	exon7	c.C645T	p.A215A	.	.	40	4	43	0	.	653
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86265519	86265519	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKAP13	NM_006738	exon25	c.T6449G	p.V2150G	.	.	138	14	136	0	.	258
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	117122236	117122236	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AKNA	NM_030767	exon10	c.2231delT	p.L744fs	.	.	49	11	76	0	.	94
ALG12	79087	bcgsc.ca	37	22	50297614	50297614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ALG12	NM_024105	exon10	c.A1339G	p.T447A	.	.	66	4	58	0	.	90
AMMECR1	9949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109444278	109444278	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AMMECR1	NM_015365	exon5	c.G791A	p.G264E	.	.	72	10	97	0	.	130
ANKRD11	29123	broad.mit.edu	37	16	89350417	89350417	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ANKRD11	NM_001256183	exon9	c.T2533C	p.L845L	.	.	101	4	115	0	.	139
ANKRD36BP2	645784	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	89065665	89065665	+	RNA	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	.	.	.	.	.	.	46	16	45	0	.	.
ANXA13	312	bcgsc.ca	37	8	124705991	124705991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ANXA13	NM_001003954	exon8	c.A623G	p.D208G	.	.	87	5	113	0	.	93
AR	367	broad.mit.edu	37	X	66765158	66765158	+	Missense_Mutation	SNP	T	T	A	rs78686797		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	AR	NM_000044	exon1	c.T170A	p.L57Q	.	.	45	20	51	7	.	661
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86643102	86643102	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARHGAP24	NM_001025616	exon3	c.A245T	p.K82M	.	.	172	22	207	0	.	227
ARHGAP36	158763	bcgsc.ca	37	X	130218352	130218352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARHGAP36	NM_144967	exon5	c.A719G	p.E240G	.	.	78	5	113	1	.	133
ARID4A	5926	bcgsc.ca	37	14	58825870	58825870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARID4A	NM_002892	exon18	c.C1874T	p.A625V	.	.	94	6	104	1	.	231
ARSI	340075	ucsc.edu;bcgsc.ca	37	5	149681722	149681722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ARSI	NM_001012301	exon1	c.C215A	p.P72H	.	.	21	4	37	0	.	92
ASXL1	171023	bcgsc.ca;mdanderson.org	37	20	31017824	31017824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ASXL1	NM_015338	exon7	c.C686A	p.P229Q	.	.	15	3	24	0	.	2057
ATAD2	29028	broad.mit.edu;bcgsc.ca	37	8	124382254	124382254	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ATAD2	NM_014109	exon7	c.A738G	p.E246E	.	.	89	5	118	0	.	92
BAZ1A	11177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35231121	35231121	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BAZ1A	NM_013448	exon24	c.A4085G	p.K1362R	.	.	328	36	365	1	.	291
BBS4	585	broad.mit.edu	37	15	73016989	73016989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BBS4	NM_033028	exon8	c.G580A	p.A194T	.	.	104	5	111	0	.	90
BMP1	649	bcgsc.ca	37	8	22052386	22052386	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BMP1	NM_001199	exon12	c.T1593C	p.S531S	.	.	67	5	49	0	.	155
BMP5	653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	55620459	55620459	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BMP5	NM_021073	exon7	c.C1237G	p.H413D	.	.	266	20	242	0	.	516
BST1	683	broad.mit.edu	37	4	15733387	15733387	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	BST1	NM_004334	exon9	c.A876G	p.K292K	.	.	162	6	167	0	.	90
C9orf57	138240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74667237	74667237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001128618	exon5	c.G461T	p.C154F	.	.	79	13	86	0	.	.
C9orf84	158401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114462240	114462240	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	C9orf84	NM_173521	exon22	c.T2985C	p.D995D	.	.	48	13	61	0	.	92
CASC3	22794	bcgsc.ca	37	17	38318311	38318311	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CASC3	NM_007359	exon5	c.T513C	p.D171D	.	.	78	4	101	0	.	91
CATSPERB	79820	bcgsc.ca	37	14	92091215	92091215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CATSPERB	NM_024764	exon18	c.C1879A	p.L627I	.	.	100	4	116	0	.	138
CCDC125	202243	broad.mit.edu	37	5	68588122	68588122	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CCDC125	NM_176816	exon9	c.A992G	p.E331G	.	.	192	5	203	1	.	90
CCDC132	55610	broad.mit.edu;bcgsc.ca	37	7	92935295	92935295	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CCDC132	NM_017667	exon18	c.A1608G	p.E536E	.	.	71	4	83	0	.	90
CCDC168	643677	broad.mit.edu	37	13	103385483	103385483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001146197	exon4	c.T17564C	p.F5855S	.	.	218	5	264	1	.	.
CCDC173	129881	broad.mit.edu	37	2	170531109	170531109	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001085447	exon4	c.T639C	p.A213A	.	.	82	4	49	0	.	.
CCDC178	374864	bcgsc.ca	37	18	30873230	30873230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001105528	exon11	c.T1069C	p.S357P	.	.	154	6	175	0	.	.
CCT6B	10693	bcgsc.ca	37	17	33259440	33259440	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CCT6B	NM_006584	exon11	c.A1293G	p.G431G	.	.	70	4	106	0	.	91
CFB	629	broad.mit.edu;bcgsc.ca	37	6	31917266	31917266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CFB	NM_001710	exon10	c.A1340G	p.D447G	.	.	75	5	101	0	.	91
CHAT	1103	bcgsc.ca	37	10	50828601	50828601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CHAT	NM_020549	exon4	c.T640C	p.S214P	.	.	55	4	66	0	.	514
CHL1	10752	broad.mit.edu;bcgsc.ca	37	3	425546	425546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CHL1	NM_001253388	exon17	c.A2224G	p.K742E	.	.	97	9	133	0	.	583
CIDEB	27141	broad.mit.edu	37	14	24775280	24775280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CIDEB	NM_014430	exon6	c.T400C	p.F134L	.	.	40	4	47	0	.	90
CLEC4F	165530	broad.mit.edu;bcgsc.ca	37	2	71043538	71043538	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CLEC4F	NM_173535	exon4	c.A975G	p.E325E	.	.	187	5	183	0	.	95
CLGN	1047	broad.mit.edu;bcgsc.ca	37	4	141313503	141313503	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CLGN	NM_001130675	exon14	c.A1521G	p.K507K	.	.	243	12	264	1	.	93
COL5A1	1289	broad.mit.edu;bcgsc.ca	37	9	137674544	137674544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COL5A1	NM_000093	exon29	c.A2462G	p.D821G	.	.	78	4	102	0	.	524
COQ6	51004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74422552	74422552	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COQ6	NM_182476	exon4	c.T402G	p.D134E	.	.	91	17	122	0	.	90
COX18	285521	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73923971	73923971	+	Missense_Mutation	SNP	C	C	A	rs201251329	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	COX18	NM_173827	exon6	c.G862T	p.V288L	.	.	129	36	123	1	C|0.999;T|0.001	90
CRAT	1384	ucsc.edu	37	9	131862190	131862190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CRAT	NM_000755	exon8	c.A1040G	p.E347G	.	.	35	5	33	0	.	90
CRY1	1407	broad.mit.edu;bcgsc.ca	37	12	107486610	107486610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CRY1	NM_004075	exon1	c.T130C	p.S44P	.	.	75	6	82	0	.	93
CYFIP2	26999	broad.mit.edu	37	5	156731354	156731354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	CYFIP2	NM_001037332	exon8	c.G775A	p.E259K	.	.	105	3	103	0	.	22
DAZAP1	26528	broad.mit.edu;mdanderson.org	37	19	1434862	1434862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DAZAP1	NM_018959	exon12	c.G1175A	p.G392E	.	.	24	10	23	0	.	153
DCAF17	80067	bcgsc.ca	37	2	172309721	172309721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DCAF17	NM_001164821	exon6	c.A625G	p.K209E	.	.	74	4	62	0	.	90
DCBLD2	131566	broad.mit.edu	37	3	98527018	98527018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DCBLD2	NM_080927	exon13	c.A1577G	p.D526G	.	.	19	3	36	0	.	92
DENND4A	10260	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65962395	65962395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DENND4A	NM_001144823	exon26	c.A4593T	p.L1531F	.	.	89	9	103	1	.	229
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	37621023	37621023	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX35	NM_021931	exon7	c.C537T	p.H179H	.	.	130	11	138	0	.	226
DHX37	57647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	125455935	125455935	+	Silent	SNP	C	C	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX37	NM_032656	exon8	c.G1104C	p.V368V	.	.	34	5	45	0	.	227
DHX38	9785	bcgsc.ca	37	16	72136986	72136986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DHX38	NM_014003	exon12	c.T1513C	p.F505L	.	.	80	4	88	0	.	227
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61511712	61511712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DIDO1	NM_001193369	exon16	c.G5596A	p.A1866T	.	.	53	9	50	0	.	96
DLC1	10395	broad.mit.edu	37	8	13357118	13357118	+	Missense_Mutation	SNP	G	G	T	rs150963046		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DLC1	NM_182643	exon2	c.C463A	p.Q155K	.	.	222	5	228	1	G|1.000;T|0.000	657
DMD	1756	bcgsc.ca	37	X	32429908	32429908	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DMD	NM_004006	exon30	c.A4194G	p.A1398A	.	.	141	5	152	0	.	265
DNAH17	8632	bcgsc.ca	37	17	76563173	76563173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DNAH17	NM_173628	exon10	c.G1360A	p.G454R	.	.	61	4	71	0	.	142
DNAH6	1768	bcgsc.ca	37	2	85043206	85043206	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DNAH6	NM_001370	exon76	c.A12372G	p.T4124T	.	.	81	4	80	0	.	69
DOCK7	85440	broad.mit.edu	37	1	63044535	63044535	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DOCK7	NM_001271999	exon17	c.A1974G	p.K658K	.	.	192	5	216	0	.	92
DTHD1	401124	broad.mit.edu	37	4	36307811	36307811	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DTHD1	NM_001170700	exon5	c.1269-2A>G	.	.	.	69	3	61	0	.	46
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36296584	36296584	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	DTHD1	NM_001170700	exon4	c.C1191T	p.N397N	.	.	152	39	223	0	.	46
ELOVL3	83401	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103988605	103988605	+	Missense_Mutation	SNP	C	C	T	rs150611171	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ELOVL3	NM_152310	exon4	c.C409T	p.R137C	.	.	98	16	115	1	C|0.999;T|0.001	92
EP300	2033	broad.mit.edu;bcgsc.ca	37	22	41569690	41569690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EP300	NM_001429	exon29	c.A4681G	p.S1561G	.	.	121	6	170	0	.	2011
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34761813	34761813	+	Silent	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	EPB41L1	NM_001258329	exon3	c.C114A	p.G38G	.	.	71	17	81	0	.	93
ERBB3	2065	bcgsc.ca	37	12	56487586	56487586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ERBB3	NM_001982	exon13	c.G1519T	p.G507W	.	.	63	5	83	0	.	1403
FAM184B	27146	broad.mit.edu	37	4	17711023	17711023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FAM184B	NM_015688	exon2	c.C386T	p.T129M	.	.	78	6	78	0	.	23
FERMT2	10979	bcgsc.ca	37	14	53325155	53325155	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FERMT2	NM_001134999	exon16	c.A2004G	p.K668K	.	.	164	6	247	0	.	68
FMN2	56776	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	240371393	240371393	+	Missense_Mutation	SNP	C	C	A	rs201701711	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FMN2	NM_020066	exon5	c.C3281A	p.A1094E	.	.	58	13	76	0	C|0.999;T|0.001	145
FPGS	2356	ucsc.edu;bcgsc.ca	37	9	130569924	130569924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FPGS	NM_004957	exon8	c.A701G	p.D234G	.	.	37	4	51	0	.	90
FRMPD4	9758	broad.mit.edu	37	X	12693004	12693004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FRMPD4	NM_014728	exon5	c.C445T	p.L149F	.	.	154	3	157	0	.	263
FRS3	10817	broad.mit.edu	37	6	41743324	41743324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FRS3	NM_006653	exon4	c.A86G	p.E29G	.	.	45	4	34	0	.	92
FSD2	123722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83451591	83451591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	FSD2	NM_001007122	exon4	c.A922G	p.T308A	.	.	220	24	286	0	.	90
GAB1	2549	broad.mit.edu	37	4	144361357	144361357	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GAB1	NM_207123	exon6	c.A1407G	p.E469E	.	.	167	4	169	0	.	1146
GALNT13	114805	broad.mit.edu	37	2	155157991	155157991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GALNT13	NM_052917	exon9	c.A1045G	p.T349A	.	.	179	4	209	1	.	95
GCC2	9648	bcgsc.ca	37	2	109086528	109086528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GCC2	NM_181453	exon6	c.A743G	p.H248R	.	.	104	5	134	0	.	91
GK5	256356	broad.mit.edu;bcgsc.ca	37	3	141904805	141904805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GK5	NM_001039547	exon9	c.A782G	p.E261G	.	.	146	5	173	0	.	90
GLI2	2736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	121747077	121747077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GLI2	NM_005270	exon13	c.G3587A	p.G1196E	.	.	78	19	63	0	.	954
GNAL	2774	bcgsc.ca	37	18	11881005	11881005	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GNAL	NM_182978	exon12	c.C1248T	p.T416T	.	.	43	4	47	0	.	228
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	.	.	95	28	97	0	C|1.000	4767
GOLGA8DP	100132979	broad.mit.edu	37	15	22709637	22709637	+	RNA	SNP	T	T	G	rs75532388		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	.	.	.	.	.	.	32	3	34	1	T|1.000;|0.000	.
GPATCH1	55094	bcgsc.ca	37	19	33608776	33608776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GPATCH1	NM_018025	exon16	c.C2242T	p.R748C	.	.	60	4	64	0	.	91
GPR50	9248	broad.mit.edu	37	X	150349723	150349723	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GPR50	NM_004224	exon2	c.C1668T	p.D556D	.	.	89	6	135	0	.	176
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158254023	158254023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	GRIA2	NM_000826	exon7	c.G935A	p.R312H	.	.	118	15	121	0	.	515
HABP4	22927	broad.mit.edu;bcgsc.ca	37	9	99246841	99246841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	HABP4	NM_014282	exon6	c.T925C	p.F309L	.	.	150	5	232	1	.	91
HAUS5	23354	broad.mit.edu	37	19	36109582	36109582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	HAUS5	NM_015302	exon12	c.G997T	p.V333F	.	.	35	3	27	0	.	68
HERC1	8925	broad.mit.edu	37	15	64021479	64021479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	HERC1	NM_003922	exon16	c.T3110C	p.L1037P	.	.	236	6	242	0	.	666
HERC2	8924	broad.mit.edu	37	15	28413560	28413560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	HERC2	NM_004667	exon67	c.A10406G	p.K3469R	.	.	203	4	205	1	.	234
IL1A	3552	broad.mit.edu	37	2	113539268	113539268	+	Missense_Mutation	SNP	C	C	T	rs138861340	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	IL1A	NM_000575	exon4	c.G232A	p.G78R	.	.	126	3	150	1	C|0.998;T|0.002	522
INPP5E	56623	mdanderson.org	37	9	139324737	139324737	+	Silent	SNP	C	C	G	rs33982662	byfrequency;alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	INPP5E	NM_019892	exon9	c.G1794C	p.G598G	.	.	32	3	42	1	C|0.796;A|0.204	227
IQGAP2	10788	broad.mit.edu	37	5	75902128	75902128	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	IQGAP2	NM_006633	exon12	c.C1357T	p.R453X	.	.	68	3	97	0	.	96
IRF9	10379	broad.mit.edu	37	14	24631504	24631504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	IRF9	NM_006084	exon2	c.C151T	p.R51W	.	.	61	3	98	1	.	69
ITGA1	3672	broad.mit.edu	37	5	52189579	52189579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ITGA1	NM_181501	exon9	c.A998G	p.E333G	.	.	77	4	100	0	.	228
ITGAL	3683	bcgsc.ca	37	16	30490718	30490718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ITGAL	NM_002209	exon6	c.A512G	p.E171G	.	.	46	4	64	0	.	994
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54785172	54785172	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_198510	exon8	c.C1335T	p.N445N	.	.	80	24	120	0	.	.
ITPK1	3705	bcgsc.ca	37	14	93460318	93460318	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ITPK1	NM_001142593	exon5	c.A271G	p.T91A	.	.	53	5	85	1	.	115
KDM3A	55818	bcgsc.ca	37	2	86697456	86697456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KDM3A	NM_001146688	exon11	c.G1649A	p.R550H	.	.	132	6	136	0	.	291
KIAA0947	23379	broad.mit.edu	37	5	5465066	5465066	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KIAA0947	NM_015325	exon13	c.G5619T	p.G1873G	.	.	103	4	113	0	.	48
KIAA1217	56243	bcgsc.ca	37	10	24833273	24833273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KIAA1217	NM_019590	exon19	c.T5074C	p.S1692P	.	.	74	4	93	0	.	98
KRT6B	3854	broad.mit.edu	37	12	52841345	52841345	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KRT6B	NM_005555	exon8	c.A1437G	p.E479E	.	.	58	4	76	1	.	92
KRT83	3889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52712959	52712959	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	KRT83	NM_002282	exon2	c.C574A	p.L192M	.	.	121	31	142	0	.	91
LGALS9	3965	bcgsc.ca	37	17	25970557	25970557	+	Missense_Mutation	SNP	C	C	T	rs61747751	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LGALS9	NM_009587	exon5	c.C451T	p.R151C	.	.	305	25	319	8	C|0.947;T|0.053	226
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	38482266	38482266	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LIFR	NM_002310	exon20	c.G2725T	p.E909X	.	.	86	14	90	0	.	1173
LPIN1	23175	bcgsc.ca	37	2	11922587	11922587	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LPIN1	NM_001261428	exon9	c.T1365C	p.S455S	.	.	68	4	82	0	.	156
LPPR1	0	broad.mit.edu;bcgsc.ca	37	9	104071698	104071698	+	Silent	SNP	C	C	A	rs145402155	alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_207299	exon5	c.C591A	p.P197P	.	.	48	4	63	0	C|1.000;T|0.000	.
LRIT3	345193	broad.mit.edu	37	4	110791836	110791836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LRIT3	NM_198506	exon4	c.C1931T	p.T644I	.	.	165	4	136	1	.	90
LRP3	4037	ucsc.edu	37	19	33695575	33695575	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LRP3	NM_002333	exon4	c.C292A	p.Q98K	.	.	19	2	20	0	.	92
LSS	4047	mdanderson.org	37	21	47635627	47635627	+	Silent	SNP	C	C	T	rs9980968	byfrequency;alternate_allele	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LSS	NM_001001438	exon8	c.G864A	p.P288P	.	.	42	3	55	0	C|0.618;G|0.382	90
LYAR	55646	broad.mit.edu	37	4	4270342	4270342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	LYAR	NM_017816	exon9	c.G920A	p.G307D	.	.	87	3	77	0	.	90
MAGEA10	4109	bcgsc.ca	37	X	151302989	151302989	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MAGEA10	NM_001011543	exon5	c.T1104C	p.P368P	.	.	79	4	80	0	.	130
MBOAT2	129642	broad.mit.edu	37	2	9048749	9048749	+	Splice_Site	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MBOAT2	NM_138799	exon5	c.395+2T>C	.	.	.	272	6	277	0	.	90
MGAT4A	11320	bcgsc.ca	37	2	99291606	99291606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MGAT4A	NM_012214	exon4	c.A295G	p.S99G	.	.	70	4	86	0	.	91
MID2	11043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	107084301	107084301	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MID2	NM_012216	exon2	c.C406T	p.R136X	.	.	75	12	90	0	.	227
MKKS	8195	bcgsc.ca	37	20	10389307	10389307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MKKS	NM_170784	exon4	c.A1130G	p.N377S	.	.	89	4	116	0	.	90
MKS1	54903	ucsc.edu	37	17	56284483	56284483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MKS1	NM_017777	exon15	c.A1370G	p.E457G	.	.	44	5	77	0	.	91
MRPS28	28957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	80942420	80942420	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MRPS28	NM_014018	exon1	c.T64C	p.F22L	.	.	36	4	43	0	.	90
MSR1	4481	broad.mit.edu	37	8	16026064	16026064	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MSR1	NM_138715	exon4	c.A533G	p.K178R	.	.	214	5	239	0	.	91
MTDH	92140	bcgsc.ca	37	8	98701330	98701330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MTDH	NM_178812	exon5	c.G810T	p.Q270H	.	.	188	6	162	0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060181	9060181	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC16	NM_024690	exon3	c.A27265C	p.T9089P	.	.	108	14	111	0	.	566
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195513066	195513066	+	Silent	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MUC4	NM_018406	exon2	c.C5385A	p.V1795V	.	.	411	53	539	0	.	90
MXRA5	25878	broad.mit.edu	37	X	3241398	3241398	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MXRA5	NM_015419	exon5	c.A2328G	p.K776K	.	.	156	5	205	0	.	136
MYH9	4627	broad.mit.edu;bcgsc.ca	37	22	36737554	36737554	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	MYH9	NM_002473	exon3	c.C351T	p.F117F	.	.	73	4	77	0	.	292
NEK2	4751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211848801	211848801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEK2	NM_002497	exon1	c.C21A	p.D7E	.	.	67	10	80	0	.	765
NEU1	4758	broad.mit.edu;ucsc.edu	37	6	31829947	31829947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NEU1	NM_000434	exon2	c.G181A	p.E61K	.	.	42	3	65	0	.	91
NOMO2	283820	broad.mit.edu	37	16	18549925	18549925	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NOMO2	NM_173614	exon11	c.A1143G	p.K381K	.	.	541	7	661	0	.	23
NOP14-AS1	317648	ucsc.edu	37	4	2940397	2940397	+	RNA	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	.	.	.	.	.	.	28	1	30	0	.	.
NPC1	4864	broad.mit.edu;bcgsc.ca	37	18	21140425	21140425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NPC1	NM_000271	exon6	c.G651A	p.M217I	.	.	83	5	83	0	.	92
NSD1	64324	broad.mit.edu;bcgsc.ca	37	5	176675231	176675231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NSD1	NM_022455	exon11	c.A4547G	p.E1516G	.	.	45	4	73	0	.	188
NSUN5P1	155400	broad.mit.edu;mdanderson.org	37	7	75045350	75045350	+	RNA	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NSUN5P1	.	.	.	.	.	.	69	25	96	0	.	22
NXF3	56000	bcgsc.ca	37	X	102337265	102337265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NXF3	NM_022052	exon9	c.T808C	p.W270R	.	.	128	5	171	1	.	205
NXF5	55998	broad.mit.edu	37	X	101096647	101096647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	NXF5	NM_032946	exon5	c.A239G	p.K80R	.	.	520	9	593	1	.	204
ODF1	4956	bcgsc.ca	37	8	103564005	103564005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ODF1	NM_024410	exon1	c.A50G	p.K17R	.	.	76	4	75	0	.	70
OR2AE1	81392	bcgsc.ca	37	7	99474092	99474092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	OR2AE1	NM_001005276	exon1	c.T565C	p.C189R	.	.	60	4	63	0	.	90
PAN2	9924	ucsc.edu;bcgsc.ca	37	12	56720646	56720646	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PAN2	NM_014871	exon7	c.A1017G	p.S339S	.	.	38	4	33	0	.	702
PAPPA	5069	broad.mit.edu	37	9	119106829	119106829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PAPPA	NM_002581	exon14	c.C3619T	p.H1207Y	.	.	44	3	53	0	.	77
PATL1	219988	bcgsc.ca	37	11	59406632	59406632	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PATL1	NM_152716	exon18	c.G2180A	p.R727Q	.	.	52	4	67	0	.	1
PCDHB3	56132	broad.mit.edu	37	5	140481821	140481821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCDHB3	NM_018937	exon1	c.C1588T	p.R530C	.	.	70	3	90	0	.	92
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140736620	140736620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_018917	exon1	c.C1853T	p.A618V	.	.	143	15	177	0	.	.
PCK1	5105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139386	56139386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1123A	p.E375K	.	.	93	16	134	1	.	227
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	56139383	56139383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PCK1	NM_002591	exon7	c.G1120A	p.D374N	.	.	94	16	131	0	.	227
PDAP1	11333	bcgsc.ca	37	7	98994343	98994343	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PDAP1	NM_014891	exon6	c.T508C	p.S170P	.	.	50	4	44	0	.	90
PDE4D	5144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	58511685	58511685	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PDE4D	NM_001104631	exon2	c.G565T	p.E189X	.	.	76	25	97	0	.	226
PKHD1	5314	bcgsc.ca	37	6	51497491	51497491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PKHD1	NM_138694	exon65	c.T11537C	p.F3846S	.	.	64	4	72	0	.	603
PLB1	151056	bcgsc.ca	37	2	28772919	28772919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PLB1	NM_001170585	exon16	c.A1084G	p.T362A	.	.	63	4	54	1	.	141
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7400976	7400976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	POLR2A	NM_000937	exon7	c.A989T	p.Q330L	.	.	73	20	89	0	.	91
PPP2R2C	5522	broad.mit.edu	37	4	6380178	6380178	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PPP2R2C	NM_181876	exon3	c.G290A	p.W97X	.	.	88	3	103	0	.	1084
PRAMEF21	391001	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	13742998	13742998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001100114	exon1	c.C187T	p.R63C	.	.	263	12	323	0	.	.
PSMB5	5693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23502649	23502649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PSMB5	NM_001144932	exon2	c.A433G	p.M145V	.	.	44	4	56	0	.	91
PSMD2	5708	bcgsc.ca	37	3	184021755	184021755	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PSMD2	NM_002808	exon11	c.T1344C	p.C448C	.	.	82	4	92	0	.	90
PTCHD2	57540	broad.mit.edu;bcgsc.ca	37	1	11584041	11584041	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTCHD2	NM_020780	exon11	c.G2405C	p.R802P	.	.	86	6	85	0	.	209
PTGES	9536	broad.mit.edu;mdanderson.org	37	9	132502105	132502105	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTGES	NM_004878	exon3	c.T244A	p.F82I	.	.	47	7	78	0	.	226
PTPN23	25930	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	47452056	47452056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPN23	NM_015466	exon20	c.C2768T	p.T923I	.	.	62	18	135	0	.	227
PTPRM	5797	bcgsc.ca	37	18	7888127	7888127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	PTPRM	NM_001105244	exon3	c.T220C	p.S74P	.	.	116	6	163	0	.	228
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	80862537	80862537	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001145026	exon4	c.A443T	p.K148M	.	.	122	18	98	0	.	.
RALGAPA2	57186	broad.mit.edu	37	20	20501669	20501669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RALGAPA2	NM_020343	exon31	c.T3976C	p.S1326P	.	.	66	5	54	2	.	24
RBP3	5949	bcgsc.ca	37	10	48385937	48385937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RBP3	NM_002900	exon2	c.A3155G	p.D1052G	.	.	76	4	93	1	.	153
RMDN2	151393	broad.mit.edu	37	2	38178436	38178436	+	Silent	SNP	C	C	T	rs181813340		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_144713	exon2	c.C78T	p.D26D	.	.	35	3	39	0	C|0.999;T|0.000	.
RNGTT	8732	broad.mit.edu	37	6	89616120	89616120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RNGTT	NM_003800	exon5	c.T407C	p.L136P	.	.	199	6	181	1	.	91
ROR1	4919	broad.mit.edu	37	1	64475037	64475037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ROR1	NM_001083592	exon2	c.A152G	p.E51G	.	.	183	5	206	0	.	1536
RORA	6095	broad.mit.edu	37	15	60789788	60789788	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RORA	NM_134260	exon12	c.T1537C	p.L513L	.	.	111	4	141	0	.	290
RRN3P2	653390	broad.mit.edu	37	16	29110438	29110438	+	RNA	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	.	.	.	.	.	.	241	5	228	1	.	.
RTKN	6242	broad.mit.edu	37	2	74657601	74657601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RTKN	NM_001015055	exon4	c.A418G	p.N140D	.	.	127	4	125	0	.	91
RUSC2	9853	broad.mit.edu	37	9	35546843	35546843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	RUSC2	NM_014806	exon2	c.G325T	p.V109L	.	.	90	3	115	1	.	91
RXRA	6256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137326002	137326002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	RXRA,NS,carcinoma,0	RXRA	NM_002957	exon9	c.A1190G	p.Y397C	.	.	15	5	30	0	.	188
SACM1L	22908	bcgsc.ca	37	3	45754651	45754651	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SACM1L	NM_014016	exon6	c.A506G	p.N169S	.	.	19	3	38	0	.	91
SASH1	23328	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	148835544	148835544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SASH1	NM_015278	exon9	c.A814G	p.R272G	.	.	38	5	42	0	.	90
SCLT1	132320	bcgsc.ca	37	4	129869685	129869685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SCLT1	NM_144643	exon15	c.A1259G	p.K420R	.	.	51	4	58	0	.	525
SCN7A	6332	broad.mit.edu	37	2	167269124	167269124	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SCN7A	NM_002976	exon22	c.C3522T	p.I1174I	.	.	273	5	252	1	.	67
SCT	6343	broad.mit.edu	37	11	626488	626488	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_021920	exon4	c.G309A	p.G103G	.	.	170	5	173	0	.	.
SLC17A5	26503	broad.mit.edu	37	6	74304852	74304852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC17A5	NM_012434	exon11	c.A1436G	p.K479R	.	.	156	4	155	0	.	190
SLC22A9	114571	broad.mit.edu	37	11	63174122	63174122	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC22A9	NM_080866	exon7	c.C1227T	p.S409S	.	.	91	4	84	0	.	153
SLC5A11	115584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	24902218	24902218	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SLC5A11	NM_052944	exon9	c.A693G	p.G231G	.	.	61	12	84	0	.	92
SMC4	10051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160141354	160141354	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SMC4	NM_005496	exon13	c.T2161G	p.L721V	.	.	103	24	85	0	.	291
SMC4	10051	ucsc.edu	37	3	160134135	160134135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SMC4	NM_005496	exon9	c.G1369A	p.E457K	.	.	167	2	176	2	.	291
STAMBP	10617	broad.mit.edu	37	2	74086408	74086408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	STAMBP	NM_006463	exon9	c.T1033C	p.S345P	.	.	161	4	173	1	.	524
STXBP5L	9515	broad.mit.edu	37	3	120764333	120764333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	STXBP5L	NM_014980	exon5	c.A421G	p.R141G	.	.	98	3	95	0	.	77
SULT2B1	6820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	49090570	49090570	+	Missense_Mutation	SNP	G	G	A	rs138292714	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SULT2B1	NM_177973	exon3	c.G299A	p.R100Q	.	.	53	8	45	0	G|1.000;A|0.000	91
SUPT20HL2	170067	bcgsc.ca	37	X	24330043	24330043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001136233	exon1	c.C1390T	p.R464C	.	.	394	11	498	0	.	.
SV2A	9900	broad.mit.edu	37	1	149884808	149884808	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	SV2A	NM_014849	exon2	c.A585G	p.K195K	.	.	84	3	85	0	.	97
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu	37	6	152644792	152644792	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	SYNE1_ENST00000265368,NS,carcinoma,0	SYNE1	NM_182961	exon82	c.G15738A	p.E5246E	.	.	69	4	86	0	.	607
TEX35	84066	broad.mit.edu;bcgsc.ca	37	1	178489858	178489858	+	Missense_Mutation	SNP	A	A	G	rs35769219	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001170722	exon7	c.A416G	p.K139R	.	.	70	4	67	0	A|0.998;G|0.002	.
THSD1	55901	broad.mit.edu;bcgsc.ca	37	13	52972291	52972300	+	Frame_Shift_Del	DEL	CTGGCTCTCT	CTGGCTCTCT	-	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	CTGGCTCTCT	CTGGCTCTCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	THSD1	NM_018676	exon3	c.88_97del	p.30_33del	.	.	58	10	73	0	.	94
TIAL1	7073	broad.mit.edu	37	10	121337217	121337217	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TIAL1	NM_001033925	exon8	c.A639G	p.V213V	.	.	78	3	105	0	.	91
TM9SF2	9375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100206607	100206607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TM9SF2	NM_004800	exon14	c.A1538G	p.E513G	.	.	145	24	167	0	.	91
TMEM87A	25963	ucsc.edu	37	15	42556365	42556365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TMEM87A	NM_001110503	exon4	c.G328A	p.E110K	.	.	168	1	166	0	.	91
TMUB1	83590	broad.mit.edu	37	7	150779578	150779578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TMUB1	NM_031434	exon2	c.G73A	p.A25T	.	.	66	4	72	0	.	90
TRO	7216	bcgsc.ca	37	X	54949170	54949170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TRO	NM_016157	exon3	c.A205G	p.S69G	.	.	116	5	124	0	.	131
TTLL12	23170	ucsc.edu;bcgsc.ca	37	22	43564888	43564888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TTLL12	NM_015140	exon13	c.T1675C	p.F559L	.	.	25	4	29	0	.	90
TTN	7273	bcgsc.ca	37	2	179490106	179490106	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	TTN	NM_001267550	exon241	c.A44442G	p.E14814E	.	.	51	4	62	0	.	636
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	201	4	268	12	.	.
UGT2B7	7364	broad.mit.edu	37	4	69968533	69968533	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	UGT2B7	NM_001074	exon3	c.A879G	p.E293E	.	.	182	5	190	0	.	92
UPK1B	7348	broad.mit.edu	37	3	118906794	118906794	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	UPK1B	NM_006952	exon3	c.T242A	p.M81K	.	.	104	3	125	0	.	90
USP48	84196	bcgsc.ca	37	1	22079582	22079582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	USP48	NM_001032730	exon4	c.T443C	p.L148P	.	.	47	5	38	0	.	659
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62182512	62182512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	VPS13C	NM_020821	exon67	c.A9193G	p.T3065A	.	.	70	16	112	0	.	92
WDR18	57418	mdanderson.org	37	19	994315	994315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	WDR18	NM_024100	exon10	c.C1271T	p.T424M	.	.	14	3	9	0	.	91
WHAMM	123720	bcgsc.ca	37	15	83486791	83486791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001080435	exon4	c.A1054G	p.R352G	.	.	156	6	165	0	.	.
XRCC1	7515	ucsc.edu;bcgsc.ca	37	19	44055801	44055801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	XRCC1	NM_006297	exon10	c.T1121C	p.L374P	.	.	32	4	38	0	.	912
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	81412242	81412243	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZBTB10	NM_023929	exon2	c.1486_1487insA	p.Q496fs	.	.	90	25	72	0	.	522
ZBTB41	360023	broad.mit.edu	37	1	197168567	197168567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZBTB41	NM_194314	exon1	c.A1037G	p.E346G	.	.	282	7	186	2	.	92
ZNF208	7757	ucsc.edu	37	19	22157070	22157070	+	Missense_Mutation	SNP	A	A	G	rs61739967	byfrequency	TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF208	NM_007153	exon4	c.T766C	p.S256P	.	.	32	6	24	0	A|0.971;G|0.029	7
ZNF275	10838	broad.mit.edu	37	X	152612493	152612493	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF275	NM_001080485	exon4	c.T350C	p.V117A	.	.	137	4	164	0	.	109
ZNF391	346157	bcgsc.ca	37	6	27368632	27368632	+	Silent	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF391	NM_001076781	exon3	c.A483G	p.G161G	.	.	80	4	75	0	.	69
ZNF525	170958	ucsc.edu	37	19	53885992	53885992	+	RNA	SNP	G	G	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	.	.	.	.	.	.	46	6	35	0	.	.
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38189048	38189048	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF607	NM_032689	exon5	c.A1984T	p.I662L	.	.	120	22	123	0	.	90
ZNF793	390927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38028241	38028241	+	Silent	SNP	C	C	T	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZNF793	NM_001013659	exon8	c.C681T	p.H227H	.	.	72	15	59	0	.	68
ZNF808	388558	broad.mit.edu	37	19	53057894	53057894	+	Silent	SNP	T	T	C	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001039886	exon5	c.T1725C	p.A575A	.	.	75	4	73	1	.	.
ZNF814	730051	mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	258	87	179	1	.	.
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	230	60	162	0	.	.
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	57936066	57936066	+	Silent	SNP	G	G	A	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZXDA	NM_007156	exon1	c.C789T	p.G263G	.	.	36	11	36	0	.	131
ZZEF1	23140	ucsc.edu	37	17	3913010	3913010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A3R3-01A-11D-A22F-10	TCGA-FV-A3R3-10A-01D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c285c2fa-24b4-47a1-874d-86e74b002b05	64edddfd-f366-4d51-a8b4-a357b2c68e6c	.	ZZEF1	NM_015113	exon53	c.T8621C	p.L2874P	.	.	27	3	38	0	.	93
