Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu	37	7	48559880	48559880	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA13	NM_152701	exon53	c.C14041T	p.R4681X	.	.	191	8	165	0	.	521
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67300830	67300830	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABCA5	NM_018672	exon6	c.T910A	p.F304I	.	.	113	41	57	0	.	93
ABP1	26	mdanderson.org	37	7	150553605	150553605	+	Missense_Mutation	SNP	C	C	A	rs10156191	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ABP1	NM_001091	exon2	c.C47A	p.T16K	.	.	33	14	62	0	C|0.708;T|0.292	139
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40028400	40028400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ACLY	NM_001096	exon24	c.G2678A	p.C893Y	.	.	112	21	113	0	.	228
ACSM2B	348158	broad.mit.edu	37	16	20570756	20570756	+	Missense_Mutation	SNP	A	A	G	rs74479331		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ACSM2B	NM_182617	exon4	c.T191C	p.L64P	.	.	185	6	157	2	.	94
ADAL	161823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43643144	43643144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADAL	NM_001159280	exon11	c.T697C	p.C233R	.	.	116	38	212	0	.	90
ADI1	55256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	3502749	3502749	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ADI1	NM_018269	exon4	c.G525A	p.L175L	.	.	171	27	146	2	.	91
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414938	105414938	+	Missense_Mutation	SNP	C	C	T	rs112406618		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AHNAK2	NM_138420	exon7	c.G6850A	p.V2284M	.	.	446	57	227	0	C|0.500;T|0.500	47
AJAP1	55966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	4772487	4772487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	AJAP1	NM_018836	exon2	c.C557T	p.T186M	.	.	40	13	52	0	.	515
ALB	213	bcgsc.ca	37	4	74276072	74276073	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ALB	NM_000477	exon6	c.659_660del	p.220_220del	.	.	138	42	139	1	.	96
ALKBH6	84964	bcgsc.ca	37	19	36505094	36505094	+	Silent	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ALKBH6	NM_198867	exon1	c.A42G	p.G14G	.	.	101	8	99	6	.	90
ALPK2	115701	bcgsc.ca	37	18	56203120	56203120	+	Silent	SNP	C	C	T	rs3809981	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ALPK2	NM_052947	exon5	c.G4299A	p.G1433G	.	.	75	4	97	1	C|0.606;T|0.394	765
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114274746	114274746	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ANK2	NM_001148	exon38	c.G4972C	p.V1658L	.	.	52	25	76	0	.	583
APOBEC4	403314	broad.mit.edu	37	1	183617302	183617302	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	APOBEC4	NM_203454	exon2	c.C615T	p.V205V	.	.	220	4	129	0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131104271	131104271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASAP1	NM_018482	exon25	c.C2520A	p.D840E	.	.	86	40	77	0	.	95
ASPN	54829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95228783	95228783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ASPN	NM_001193335	exon4	c.G458A	p.R153Q	.	.	210	17	202	0	.	514
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160121863	160121863	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ATP1A4	NM_144699	exon1	c.T33G	p.A11A	.	.	31	14	38	0	.	94
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQG	.	.	84	12	54	0	.	522
BEND4	389206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42145862	42145862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	BEND4	NM_001159547	exon3	c.G637A	p.E213K	.	.	284	77	266	0	.	90
BVES-AS1	154442	broad.mit.edu;ucsc.edu	37	6	105585661	105585661	+	RNA	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	.	.	63	9	58	0	.	.
C10orf40	283025	ucsc.edu;mdanderson.org	37	10	61719363	61719363	+	RNA	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	.	.	337	75	424	0	.	.
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103609618	103609618	+	Missense_Mutation	SNP	G	G	A	rs199549255		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C10orf76	NM_024541	exon25	c.C1892T	p.T631M	.	.	92	40	115	0	G|1.000;A|0.000	90
C16orf70	80262	ucsc.edu;bcgsc.ca	37	16	67166792	67166792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C16orf70	NM_025187	exon6	c.G428T	p.W143L	.	.	260	96	267	4	.	70
C1orf112	55732	broad.mit.edu	37	1	169812869	169812869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C1orf112	NM_018186	exon19	c.G1903A	p.G635R	.	.	119	4	99	0	.	90
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128105	88128105	+	Missense_Mutation	SNP	C	C	A	rs140570931	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	C6orf165	NM_001031743	exon7	c.C811A	p.Q271K	.	.	101	23	88	0	C|1.000;T|0.000	90
CABP5	56344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48543934	48543934	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CABP5	NM_019855	exon3	c.C166G	p.L56V	.	.	240	30	148	0	.	91
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	53845180	53845180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1D	NM_000720	exon49	c.C6293T	p.P2098L	.	.	203	13	196	0	.	100
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181700351	181700351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CACNA1E	NM_001205293	exon19	c.C2281A	p.P761T	.	.	404	75	282	0	.	95
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7724692	7724692	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAMTA1	NM_015215	exon9	c.G2085T	p.S695S	.	.	113	79	114	0	.	520
CAPN6	827	hgsc.bcm.edu;bcgsc.ca	37	X	110497516	110497516	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CAPN6	NM_014289	exon3	c.281delA	p.E94fs	.	.	88	74	123	0	.	195
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219874178	219874178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CCDC108	NM_194302	exon28	c.C4457T	p.S1486F	.	.	91	36	120	0	.	94
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61687728	61687728	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CDH8	NM_001796	exon12	c.G2184C	p.R728S	.	.	58	8	63	0	.	161
CFL2	1073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35182517	35182517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CFL2	NM_021914	exon2	c.A254G	p.Y85C	.	.	118	62	94	0	.	289
COG7	91949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23409377	23409377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	COG7	NM_153603	exon14	c.A1877G	p.Y626C	.	.	163	37	144	1	.	90
COL4A6	1288	broad.mit.edu	37	X	107404909	107404909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	COL4A6	NM_001847	exon42	c.C4276T	p.P1426S	.	.	119	3	215	1	.	199
COL6A5	256076	broad.mit.edu;bcgsc.ca	37	3	130145236	130145236	+	Missense_Mutation	SNP	G	G	A	rs202221090		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_153264	exon31	c.G5225A	p.R1742Q	.	.	409	14	328	0	.	.
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113519031	113519031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CSMD3	NM_198123	exon29	c.C4784A	p.S1595Y	.	.	85	31	80	0	.	1132
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	57577636	57577636	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2491T	p.G831X	.	.	48	12	37	0	.	272
CTNND1	1500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57577637	57577637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CTNND1	NM_001085458	exon16	c.G2492T	p.G831V	.	.	48	12	37	0	.	272
CYLC1	1538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83128349	83128349	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYLC1	NM_021118	exon4	c.T633A	p.T211T	.	.	64	28	84	0	.	112
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41387953	41387953	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP2A7	NM_000764	exon1	c.T163A	p.C55S	.	.	290	131	264	0	.	93
CYP3A7	1551	ucsc.edu;bcgsc.ca	37	7	99314832	99314832	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	CYP3A7	NM_000765	exon6	c.A489C	p.E163D	.	.	267	75	275	2	.	91
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49989618	49989618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DEFB110	NM_001037728	exon1	c.C31A	p.H11N	.	.	51	11	45	0	.	45
DIMT1	27292	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	61690415	61690415	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_014473	exon7	c.C466G	p.Q156E	.	.	232	44	227	1	.	.
DNAJB1	3337	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14629102	14629102	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJB1	NM_006145	exon1	c.C60T	p.I20I	.	.	28	20	26	0	.	650
DNAJC28	54943	hgsc.bcm.edu	37	21	34861366	34861366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DNAJC28	NM_001040192	exon2	c.C335A	p.A112D	.	.	81	4	96	0	.	90
DOCK5	80005	broad.mit.edu	37	8	25253118	25253118	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DOCK5	NM_024940	exon45	c.C4587T	p.I1529I	.	.	130	6	98	0	.	71
DST	667	hgsc.bcm.edu	37	6	56489962	56489962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DST	NM_001723	exon21	c.T3212C	p.I1071T	.	.	87	4	68	0	.	523
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102988459	102988459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	DYNC2H1	NM_001377	exon6	c.C866T	p.S289L	.	.	81	11	67	1	.	68
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158139190	158139190	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EBF1	NM_024007	exon14	c.C1521T	p.N507N	.	.	84	25	117	0	.	92
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184008634	184008634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ECE2	NM_014693	exon16	c.C2174A	p.A725D	.	.	146	7	180	0	.	94
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60493468	60493468	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EFCAB3	NM_001144933	exon12	c.C1251T	p.D417D	.	.	190	44	107	0	.	227
EIF2B2	8892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75471535	75471535	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	EIF2B2	NM_014239	exon4	c.T529G	p.F177V	.	.	89	21	48	0	.	91
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45939311	45939311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBLN1	NM_006487	exon11	c.G1226A	p.R409H	.	.	50	24	35	0	.	515
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127705012	127705012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FBN2	NM_001999	exon16	c.G2111T	p.S704I	.	.	48	17	66	0	.	146
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157771741	157771741	+	Missense_Mutation	SNP	C	C	T	rs200955967		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FCRL1	NM_001159397	exon5	c.G850A	p.A284T	.	.	306	35	159	0	C|0.999;T|0.000	153
FILIP1	27145	broad.mit.edu	37	6	76022217	76022217	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FILIP1	NM_015687	exon5	c.T3331C	p.S1111P	.	.	293	6	205	2	.	94
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18154288	18154288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FLII	NM_002018	exon14	c.A1640G	p.Y547C	.	.	211	26	223	0	.	91
FOLR3	2352	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71847151	71847151	+	Silent	SNP	C	C	T	rs151190708		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	.	.	377	102	302	0	C|0.979;T|0.021	.
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79398969	79398969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FRAS1	NM_025074	exon55	c.G7852A	p.V2618I	.	.	207	110	199	0	.	68
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44975318	44975318	+	Silent	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	FSCB	NM_032135	exon1	c.C873A	p.V291V	.	.	41	5	45	0	.	587
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120602471	120602471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GCN1L1	NM_006836	exon17	c.G1667T	p.R556I	.	.	175	13	193	0	.	94
GDF2	2658	ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48413956	48413956	+	Silent	SNP	C	C	T	rs201627211		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GDF2	NM_016204	exon2	c.G912A	p.T304T	.	.	104	21	142	2	C|0.999;T|0.001	229
GPR179	440435	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36485933	36485933	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPR179	NM_001004334	exon11	c.C3519T	p.S1173S	.	.	182	42	151	1	.	93
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90170573	90170573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GPRIN3	NM_198281	exon2	c.C689A	p.S230Y	.	.	62	20	60	0	.	71
GRIN2C	2905	broad.mit.edu	37	17	72844040	72844040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	GRIN2C	NM_000835	exon8	c.C1722A	p.F574L	.	.	293	6	145	0	.	228
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	18767353	18767353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HDAC9	NM_178425	exon12	c.C1882A	p.R628S	.	.	284	18	205	0	.	227
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150680868	150680868	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HORMAD1	NM_032132	exon9	c.C411T	p.N137N	.	.	170	21	147	0	.	92
HSPA12B	116835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3728929	3728929	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HSPA12B	NM_052970	exon8	c.G741A	p.S247S	.	.	83	17	78	0	.	226
HTR4	3360	broad.mit.edu	37	5	147889403	147889403	+	Missense_Mutation	SNP	C	C	A	rs201125001	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	HTR4	NM_001040169	exon5	c.G692T	p.R231L	.	.	167	4	138	1	.	91
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37922298	37922298	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	IKZF3	NM_012481	exon8	c.C1275T	p.Y425Y	.	.	132	27	130	0	.	971
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61912532	61912532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INCENP	NM_001040694	exon12	c.G1684A	p.D562N	.	.	91	49	102	0	.	227
INHBE	83729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	57849890	57849890	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	INHBE	NM_031479	exon2	c.C312T	p.A104A	.	.	98	6	69	0	.	577
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419146	31419146	+	Silent	SNP	G	G	A	rs141660381		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ITGAD	NM_005353	exon9	c.G918A	p.A306A	.	.	167	33	124	0	G|1.000;A|0.000	226
IVL	3713	bcgsc.ca	37	1	152883056	152883056	+	Silent	SNP	A	A	G	rs45609438	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	IVL	NM_005547	exon2	c.A783G	p.G261G	.	.	241	12	136	3	A|0.697;G|0.303	93
JAM3	83700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134014143	134014143	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	JAM3	NM_032801	exon4	c.G264C	p.L88F	.	.	94	21	64	0	.	91
KCNH6	81033	broad.mit.edu	37	17	61611361	61611361	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KCNH6	NM_030779	exon5	c.C790T	p.L264L	.	.	389	9	266	0	.	91
KCNK9	51305	broad.mit.edu	37	8	140715199	140715199	+	Missense_Mutation	SNP	C	C	T	rs187426618	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KCNK9	NM_016601	exon1	c.G37A	p.V13I	.	.	113	4	136	0	C|0.999;G|0.000	93
KLHDC3	116138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42986679	42986679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHDC3	NM_057161	exon8	c.G899T	p.G300V	.	.	73	13	91	0	.	91
KLHL1	57626	broad.mit.edu;bcgsc.ca	37	13	70456494	70456494	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KLHL1	NM_020866	exon5	c.T1148G	p.V383G	.	.	266	12	200	2	.	90
KLHL33	123103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20898551	20898551	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001109997	exon2	c.G284A	p.R95H	.	.	117	22	86	0	.	.
KRT8	3856	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	49	7	38	0	.	92
KRT8	3856	ucsc.edu;bcgsc.ca	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	.	.	52	9	30	0	G|0.944;A|0.055	92
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63277947	63277947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LGALS12	NM_001142535	exon5	c.G574A	p.G192S	.	.	237	46	164	0	.	92
LILRA2	11027	ucsc.edu;bcgsc.ca	37	19	55086870	55086870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LILRA2	NM_001130917	exon5	c.G803T	p.G268V	.	.	257	57	192	2	.	91
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141128766	141128766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP1B	NM_018557	exon70	c.T10857G	p.C3619W	.	.	271	36	211	0	.	311
LRP8	7804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53727880	53727880	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRP8	NM_017522	exon12	c.1388-1G>A	.	.	.	152	44	152	1	.	90
LRRK1	79705	broad.mit.edu	37	15	101598270	101598270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LRRK1	NM_024652	exon29	c.G4603T	p.G1535W	.	.	129	4	130	0	.	602
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34687544	34687544	+	Silent	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LSM14A	NM_001114093	exon3	c.A291G	p.S97S	.	.	137	63	166	0	.	91
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	48823123	48823123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	LUC7L3	NM_006107	exon8	c.C736T	p.R246C	.	.	73	13	58	0	.	90
MAG	4099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35800859	35800859	+	Silent	SNP	G	G	C	rs111518896	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAG	NM_080600	exon8	c.G1314C	p.P438P	.	.	27	11	50	1	G|1.000;A|0.000	947
MAGEE2	139599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	75003421	75003421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MAGEE2	NM_138703	exon1	c.G1466A	p.R489K	.	.	126	47	266	2	.	132
MCM7	4176	broad.mit.edu	37	7	99691936	99691936	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MCM7	NM_005916	exon13	c.C1708T	p.Q570X	.	.	58	4	71	0	.	651
MEPE	56955	broad.mit.edu;bcgsc.ca	37	4	88766214	88766214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MEPE	NM_020203	exon4	c.T194C	p.V65A	.	.	27	10	38	1	.	93
MGAM	8972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141734140	141734140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MGAM	NM_004668	exon15	c.A1748C	p.H583P	.	.	153	132	241	2	.	70
MLL3	58508	bcgsc.ca	37	7	151932990	151932990	+	Missense_Mutation	SNP	C	C	T	rs76844681		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MLL3	NM_170606	exon16	c.G2681A	p.R894Q	.	.	133	18	164	4	C|0.999;T|0.001	1398
MSLN	10232	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	815541	815541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MSLN	NM_005823	exon10	c.G719T	p.W240L	.	.	40	4	78	0	.	91
MST1	4485	bcgsc.ca	37	3	49725034	49725034	+	Missense_Mutation	SNP	T	T	A	rs142964215	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MST1	NM_020998	exon3	c.A310T	p.T104S	.	.	326	43	290	15	T|0.938;A|0.062	278
MUC6	4588	bcgsc.ca	37	11	1016822	1016822	+	Silent	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MUC6	NM_005961	exon31	c.T5979G	p.T1993T	.	.	2094	99	2736	81	.	23
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48601116	48601116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYCBPAP	NM_032133	exon12	c.G1735A	p.V579I	.	.	99	54	111	0	.	230
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12655884	12655884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	MYOCD	NM_001146312	exon10	c.C1279A	p.P427T	.	.	125	32	108	0	.	93
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	204067444	204067444	+	Silent	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NBEAL1	NM_001114132	exon50	c.A7359T	p.G2453G	.	.	130	7	121	0	.	92
NBPF9	400818	bcgsc.ca	37	1	144814737	144814737	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	.	.	278	18	165	0	.	.
NDUFA13	51079	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19626948	19626948	+	Silent	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NDUFA13	.	.	.	.	.	.	184	88	176	0	.	650
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	.	.	210	48	170	1	.	145
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101571988	101571988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NFKBIZ	NM_031419	exon5	c.T618G	p.N206K	.	.	88	36	88	0	.	92
NR4A1	3164	broad.mit.edu	37	12	52452615	52452615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NR4A1	NM_001202233	exon8	c.C1723A	p.L575M	.	.	88	6	76	1	.	186
NUDT15	55270	hgsc.bcm.edu	37	13	48611931	48611931	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUDT15	NM_018283	exon1	c.G49T	p.G17X	.	.	46	5	47	0	.	90
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47801951	47801951	+	Missense_Mutation	SNP	T	T	C	rs62000434		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP160	NM_015231	exon35	c.A4165G	p.I1389V	.	.	114	30	97	0	T|0.987;C|0.013	209
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154018769	154018769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NUP210L	NM_001159484	exon26	c.C3560T	p.T1187I	.	.	209	9	146	0	.	77
NXN	64359	hgsc.bcm.edu	37	17	704279	704279	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	NXN	NM_022463	exon8	c.C1218A	p.Y406X	.	.	57	4	84	0	.	134
OR5M1	390168	broad.mit.edu	37	11	56380838	56380838	+	Silent	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OR5M1	NM_001004740	exon1	c.G141C	p.L47L	.	.	490	11	346	0	.	94
OR5T1	390155	hgsc.bcm.edu;bcgsc.ca	37	11	56044023	56044051	+	Frame_Shift_Del	DEL	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TTTGCGGAACAAAGATGTAAAGGAGGCAA	TTTGCGGAACAAAGATGTAAAGGAGGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OR5T1	NM_001004745	exon1	c.909_937del	p.303_313del	.	.	100	4	160	0	.	71
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	83999421	83999421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	OSGIN1	NM_182981	exon6	c.G1243A	p.D415N	.	.	223	49	252	0	.	68
P4HTM	54681	broad.mit.edu	37	3	49043560	49043560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	P4HTM	NM_177938	exon8	c.C1411T	p.R471C	.	.	156	5	121	0	.	205
PAPOLB	56903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4900131	4900131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PAPOLB	NM_020144	exon1	c.G1311A	p.M437I	.	.	273	55	184	0	.	493
PDPR	55066	broad.mit.edu;mdanderson.org	37	16	70165260	70165260	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PDPR	NM_017990	exon8	c.C785G	p.A262G	.	.	96	16	119	0	.	135
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42932089	42932089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PEX6	NM_000287	exon17	c.A2927C	p.K976T	.	.	104	42	122	0	.	91
PHLPP1	23239	hgsc.bcm.edu	37	18	60612502	60612502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_194449	exon12	c.A3322G	p.K1108E	.	.	89	4	160	0	.	.
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	145585532	145585532	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIAS3	NM_006099	exon14	c.T1797G	p.P599P	.	.	10	8	15	0	.	658
PIP4K2C	79837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57985226	57985226	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIP4K2C	NM_001146258	exon1	c.C154T	p.L52L	.	.	201	90	222	0	.	689
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22136992	22136992	+	Silent	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PIWIL2	NM_001135721	exon2	c.T93G	p.A31A	.	.	117	52	113	0	.	91
PLS3	5358	ucsc.edu	37	X	114871197	114871197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PLS3	NM_005032	exon8	c.A798C	p.K266N	.	.	29	3	45	0	.	193
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7417050	7417070	+	In_Frame_Del	DEL	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCCAGCTACAGCCCCAGCTCG	CCCAGCTACAGCCCCAGCTCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POLR2A	NM_000937	exon29	c.5467_5487del	p.1823_1829del	.	.	128	37	208	0	.	91
POU4F1	5457	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	79175687	79175687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	POU4F1	NM_006237	exon2	c.G1123A	p.A375T	.	.	29	5	66	0	.	515
PPCS	79717	hgsc.bcm.edu;broad.mit.edu	37	1	42922564	42922564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PPCS	NM_024664	exon1	c.C328T	p.P110S	.	.	46	4	72	0	.	90
PPME1	51400	broad.mit.edu	37	11	73915428	73915428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_016147	exon3	c.G226T	p.G76C	.	.	205	4	151	0	.	.
PREX1	57580	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47249156	47249156	+	Missense_Mutation	SNP	A	A	G	rs200234810		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PREX1	NM_020820	exon34	c.T4289C	p.I1430T	.	.	109	36	102	0	A|0.999;G|0.001	231
PRKCG	5582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54407908	54407908	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PRKCG	NM_002739	exon16	c.A1676T	p.D559V	.	.	148	16	119	1	.	1367
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48185171	48185171	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	PTPRJ	NM_002843	exon23	c.3719+1G>T	.	.	.	106	57	102	0	.	541
RALBP1	10928	broad.mit.edu	37	18	9533344	9533344	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RALBP1	NM_006788	exon8	c.C1467T	p.I489I	.	.	154	5	170	0	.	522
RASGRP4	115727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38912788	38912788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RASGRP4	NM_001146206	exon2	c.C29T	p.S10F	.	.	112	6	93	0	.	660
RBM12	10137	hgsc.bcm.edu;broad.mit.edu	37	20	34241969	34241969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RBM12	NM_001198840	exon2	c.C1276A	p.H426N	.	.	77	4	75	0	.	93
RET	5979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43615627	43615627	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RET	NM_020975	exon15	c.G2706A	p.E902E	.	.	75	21	93	1	.	4507
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32756294	32756294	+	Missense_Mutation	SNP	C	C	A	rs143582852		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RFPL3	NM_001098535	exon2	c.C429A	p.D143E	.	.	348	81	288	0	C|1.000;A|0.000	91
RGPD4	285190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	108499260	108499260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RGPD4	NM_182588	exon22	c.C5197A	p.L1733I	.	.	1025	200	937	0	.	2
RHPN2	85415	ucsc.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RHPN2	NM_033103	exon3	c.G217A	p.V73M	.	.	40	4	48	0	.	516
RNF128	79589	ucsc.edu	37	X	106016246	106016246	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RNF128	NM_194463	exon2	c.G588A	p.G196G	.	.	166	1	244	0	.	227
RNF135	84282	broad.mit.edu	37	17	29325918	29325918	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RNF135	NM_032322	exon5	c.C1008T	p.R336R	.	.	159	5	113	0	.	227
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77656991	77656991	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ROBO2	NM_002942	exon21	c.A3179C	p.K1060T	.	.	79	15	76	0	.	328
RPP25L	138716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	34610870	34610870	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_148179	exon2	c.C424G	p.L142V	.	.	30	12	49	0	.	.
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101349498	101349498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	RTL1	NM_001134888	exon1	c.C1628T	p.A543V	.	.	189	36	161	0	.	46
SCN9A	6335	hgsc.bcm.edu;bcgsc.ca	37	2	167056365	167056366	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCN9A	NM_002977	exon27	c.4750_4751del	p.1584_1584del	.	.	126	51	98	0	.	181
SCUBE1	80274	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43654278	43654278	+	Missense_Mutation	SNP	G	G	T	rs73420094	byfrequency;alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SCUBE1	NM_173050	exon6	c.C674A	p.T225K	.	.	126	29	133	1	G|0.974;A|0.026	93
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	223682	223682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDHA	NM_004168	exon2	c.C149T	p.S50F	.	.	331	75	355	0	.	226
SDK1	221935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4008918	4008918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SDK1	NM_152744	exon11	c.C1576T	p.R526W	.	.	185	68	145	1	.	138
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	80435065	80435065	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SEMA3C	NM_006379	exon7	c.T548A	p.L183H	.	.	51	8	31	0	.	515
SETD7	80854	bcgsc.ca	37	4	140450313	140450313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SETD7	NM_030648	exon4	c.C434A	p.A145D	.	.	134	5	188	0	.	91
SF1	7536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64537468	64537468	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SF1	NM_001178030	exon5	c.A822C	p.E274D	.	.	109	50	84	0	.	227
SIAH2	6478	bcgsc.ca	37	3	150480436	150480458	+	Frame_Shift_Del	DEL	CACCGGGCCGGCCCCGCCGCCGC	CACCGGGCCGGCCCCGCCGCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CACCGGGCCGGCCCCGCCGCCGC	CACCGGGCCGGCCCCGCCGCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SIAH2	NM_005067	exon1	c.179_201del	p.60_67del	.	.	34	9	44	0	.	227
SIGLEC16	400709	broad.mit.edu	37	19	50474960	50474960	+	RNA	SNP	C	C	G	rs201054007	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	.	.	.	183	12	98	2	C|0.967;G|0.032	.
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61186834	61186834	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SIX4	NM_017420	exon2	c.C1193G	p.S398X	.	.	160	31	143	0	.	154
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu	37	9	4583116	4583116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1272delT	p.S424fs	.	.	180	13	196	0	.	514
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	4583118	4583133	+	Frame_Shift_Del	DEL	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	CCGTGGGCCTGCCCGC	CCGTGGGCCTGCCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC1A1	NM_004170	exon11	c.1274_1289del	p.425_430del	.	.	168	13	198	0	.	514
SLC26A9	115019	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205890933	205890933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC26A9	NM_134325	exon17	c.C1816T	p.P606S	.	.	175	56	101	1	.	92
SLC30A10	55532	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220089062	220089067	+	In_Frame_Del	DEL	AAGTCC	AAGTCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	AAGTCC	AAGTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC30A10	NM_018713	exon4	c.1182_1187del	p.394_396del	.	.	248	22	176	0	.	90
SLC6A9	6536	hgsc.bcm.edu;bcgsc.ca	37	1	44468280	44468280	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLC6A9	NM_201649	exon7	c.G981A	p.L327L	.	.	113	5	143	0	.	90
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	84454076	84454076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SLITRK1	NM_052910	exon1	c.C1567A	p.Q523K	.	.	142	29	96	0	.	94
SPRR3	6707	ucsc.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	177	20	115	1	A|0.010;C|0.001;T|0.988	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	169	38	94	0	A|0.000;C|0.697;T|0.303	45
SRP72	6731	ucsc.edu;bcgsc.ca	37	4	57361553	57361553	+	Silent	SNP	A	A	G	rs34419325	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SRP72	NM_006947	exon17	c.A1671G	p.K557K	.	.	41	5	71	0	A|0.915;G|0.085	116
ST6GALNAC1	55808	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74625422	74625422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ST6GALNAC1	NM_018414	exon2	c.G503T	p.G168V	.	.	439	32	269	0	.	90
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	21821900	21821902	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	SUPT16H	NM_007192	exon24	c.2880_2882del	p.960_961del	.	.	248	39	213	0	.	90
TANC2	26115	broad.mit.edu	37	17	61315394	61315394	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TANC2	NM_025185	exon6	c.A767T	p.Q256L	.	.	113	7	72	0	.	24
TARBP1	6894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	234536930	234536930	+	Silent	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TARBP1	NM_005646	exon25	c.A4068T	p.L1356L	.	.	78	46	64	0	.	93
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	78380618	78380618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001098816	exon32	c.G6772A	p.D2258N	.	.	244	15	177	0	.	.
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114277525	114277525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TFDP1	NM_007111	exon4	c.C110T	p.S37F	.	.	196	53	119	0	.	416
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35219383	35219383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TGIF2	NM_021809	exon3	c.C263T	p.P88L	.	.	97	47	86	0	.	92
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155504406	155504406	+	Missense_Mutation	SNP	G	G	T	rs76467763	alternate_allele	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TIAM2	NM_012454	exon13	c.G2836T	p.G946W	.	.	113	28	106	0	.	93
TIMELESS	8914	broad.mit.edu	37	12	56815185	56815185	+	Missense_Mutation	SNP	G	G	A	rs141165439	byfrequency	TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TIMELESS	NM_003920	exon23	c.C2818T	p.R940W	.	.	180	4	173	0	G|1.000;A|0.000	159
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	129559354	129559354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM132D	NM_133448	exon9	c.G2366A	p.G789E	.	.	323	25	371	0	.	106
TMEM181	57583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159029441	159029441	+	Silent	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TMEM181	NM_020823	exon9	c.C1161T	p.F387F	.	.	315	141	366	0	.	70
TMPRSS12	283471	broad.mit.edu	37	12	51281221	51281221	+	Silent	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_182559	exon5	c.C972A	p.G324G	.	.	108	4	100	0	.	.
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47384383	47384383	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TNS3	NM_022748	exon20	c.A2620T	p.S874C	.	.	68	32	49	0	.	94
TP53	7157	hgsc.bcm.edu;bcgsc.ca	37	17	7579380	7579380	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	TP53,NS,carcinoma,+2	TP53	NM_000546	exon4	c.307delT	p.Y103fs	.	.	86	73	153	2	.	70225
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	72967815	72967815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPA1	NM_007332	exon12	c.G1385T	p.C462F	.	.	345	74	320	0	.	230
TRPT1	83707	broad.mit.edu;bcgsc.ca	37	11	63992062	63992062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPT1	NM_001160389	exon5	c.A461T	p.H154L	.	.	254	7	162	0	.	90
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142625797	142625797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	TRPV5	NM_019841	exon6	c.G751A	p.G251S	.	.	95	12	153	0	.	177
UFD1L	7353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19463069	19463069	+	Silent	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UFD1L	NM_005659	exon2	c.C60G	p.S20S	.	.	137	22	117	0	.	227
UFL1	23376	hgsc.bcm.edu;broad.mit.edu	37	6	96997391	96997391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_015323	exon14	c.G1624A	p.E542K	.	.	120	6	115	0	.	.
UGT1A4	54657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234628158	234628158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	UGT1A4	NM_007120	exon1	c.A692G	p.Y231C	.	.	299	85	289	0	.	2
USP34	9736	hgsc.bcm.edu	37	2	61505325	61505325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP34	NM_014709	exon41	c.C5408A	p.P1803H	.	.	85	4	55	0	.	579
USP7	7874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	9000399	9000399	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	USP7	NM_003470	exon13	c.C1312T	p.Q438X	.	.	40	22	39	0	.	661
VCX3A	51481	bcgsc.ca	37	X	6451791	6451791	+	Missense_Mutation	SNP	C	C	T	rs74393938		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	VCX3A	NM_016379	exon3	c.G556A	p.V186M	.	.	471	50	1688	57	C|1.000;T|0.000	22
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	184711798	184711798	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	VPS8	NM_001009921	exon42	c.G3613C	p.G1205R	.	.	113	5	160	0	.	91
VWA7	80737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31742377	31742377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_025258	exon5	c.G637A	p.E213K	.	.	56	18	42	0	.	.
WDR6	11180	broad.mit.edu	37	3	49051260	49051260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	WDR6	NM_018031	exon2	c.C2383T	p.H795Y	.	.	155	3	137	0	.	90
XKR7	343702	mdanderson.org	37	20	30583012	30583012	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	XKR7	NM_001011718	exon2	c.G726A	p.P242P	.	.	20	3	32	0	.	137
ZFYVE9	9372	hgsc.bcm.edu;bcgsc.ca	37	1	52761566	52761566	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZFYVE9	NM_007324	exon11	c.3074-1G>T	.	.	.	94	5	131	0	.	230
ZNF335	63925	broad.mit.edu;bcgsc.ca	37	20	44588920	44588920	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF335	NM_022095	exon14	c.C1947T	p.F649F	.	.	180	10	173	1	.	94
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	88498400	88498400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001127464	exon2	c.T4438C	p.S1480P	.	.	61	7	54	0	.	.
ZNF479	90827	ucsc.edu;bcgsc.ca	37	7	57188708	57188708	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF479	NM_033273	exon5	c.C414T	p.H138H	.	.	382	165	311	3	.	72
ZNF490	57474	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12692141	12692141	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF490	NM_020714	exon5	c.T748A	p.Y250N	.	.	63	20	75	1	.	90
ZNF584	201514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58929119	58929119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF584	NM_173548	exon4	c.G1234A	p.D412N	.	.	249	33	168	2	.	90
ZNF705A	440077	broad.mit.edu;mdanderson.org	37	12	8329947	8329947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF705A	NM_001004328	exon5	c.G671A	p.G224E	.	.	86	9	100	0	.	90
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	438107	438107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF721	NM_133474	exon3	c.G149T	p.W50L	.	.	135	23	127	0	.	47
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58264871	58264871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G373A	p.D125N	.	.	106	20	84	0	.	91
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58265306	58265306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZNF776	NM_173632	exon3	c.G808A	p.D270N	.	.	82	10	68	0	.	91
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	239	77	170	0	.	.
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	194	56	151	0	.	.
ZP2	7783	broad.mit.edu	37	16	21213461	21213461	+	Silent	SNP	G	G	A	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	ZP2	NM_003460	exon11	c.C1251T	p.F417F	.	.	83	4	83	1	.	91
LRRTM3	347731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	68687250	68687251	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.I193F	.	.	.	.	.	.	.	
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	61726908	61726909	+	Missense_Mutation	DNP	TC	TC	AT	novel		TCGA-FV-A496-01A-11D-A25V-10	TCGA-FV-A496-10A-01D-A25V-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e6ad1a2-f1eb-44d1-9852-f5752afcf5eb	b736880f-ab1f-41fa-8776-38421620f821	.	.	.	.	.	p.E177I	.	.	.	.	.	.	.	
