Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB1	5243	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	87170675	87170675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ABCB1	NM_000927	exon19	c.C2317A	p.Q773K	.	.	24	4	16	0	.	582
ABCB4	5244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87051507	87051507	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ABCB4	NM_018850	exon18	c.A2246T	p.Q749L	.	.	543	80	249	1	.	96
AGFG1	3267	broad.mit.edu;bcgsc.ca	37	2	228389469	228389487	+	Frame_Shift_Del	DEL	GGTTTGTAGTCCCCAGTTG	GGTTTGTAGTCCCCAGTTG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	GGTTTGTAGTCCCCAGTTG	GGTTTGTAGTCCCCAGTTG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	AGFG1	NM_004504	exon5	c.541_550del	p.181_184del	.	.	74	9	73	0	.	228
AHNAK	79026	broad.mit.edu	37	11	62297089	62297089	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	AHNAK	NM_001620	exon5	c.C4800T	p.S1600S	.	.	38	5	71	0	.	109
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	37442511	37442511	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ANKRD30A	NM_052997	exon13	c.G1551A	p.E517E	.	.	900	66	886	0	.	161
ARHGEF2	9181	hgsc.bcm.edu	37	1	155935533	155935533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF2	NM_001162383	exon5	c.C359G	p.P120R	.	.	75	5	23	0	.	228
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135863020	135863020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF6	NM_004840	exon1	c.G22A	p.V8M	.	.	36	25	41	0	.	227
ARHGEF7	8874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111811416	111811416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARHGEF7	NM_001113511	exon3	c.A295G	p.T99A	.	.	109	40	136	2	.	232
ARID3A	1820	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	932472	932472	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID3A	NM_005224	exon3	c.G423C	p.E141D	.	.	59	13	53	0	.	90
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63851583	63851583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ARID5B	NM_032199	exon10	c.C2361A	p.S787R	.	.	96	16	98	0	.	94
BCLAF1	9774	broad.mit.edu	37	6	136600958	136600958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BCLAF1	NM_001077440	exon3	c.G47T	p.R16I	.	.	30	3	32	0	.	228
BEND3	57673	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107391665	107391665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BEND3	NM_001080450	exon5	c.C730T	p.P244S	.	.	145	72	136	1	.	71
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32914479	32914479	+	Missense_Mutation	SNP	C	C	G	rs80358834	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	BRCA2	NM_000059	exon11	c.C5987G	p.A1996G	.	.	56	22	66	0	.	3153
C17orf64	124773	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58503178	58503178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C17orf64	NM_181707	exon2	c.G86A	p.S29N	.	.	92	29	88	1	.	271
C1orf110	339512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	162824806	162824806	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_178550	exon4	c.G658T	p.G220W	.	.	258	28	247	0	.	.
C20orf196	149840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	5843711	5843711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C20orf196	NM_152504	exon3	c.G220A	p.A74T	.	.	90	9	79	0	.	90
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37176032	37176032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	C5orf42	NM_023073	exon31	c.A5957G	p.D1986G	.	.	141	21	82	0	.	94
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	181725193	181725193	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CACNA1E	NM_001205293	exon29	c.4091delC	p.T1364fs	.	.	163	62	150	0	.	95
CAND2	23066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12859283	12859283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CAND2	NM_001162499	exon10	c.G2852T	p.G951V	.	.	68	10	90	0	.	72
CCBL2	56267	ucsc.edu;bcgsc.ca	37	1	89414796	89414796	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CCBL2	NM_001008661	exon11	c.C1119T	p.I373I	.	.	108	25	156	3	.	91
CDK5R2	8941	broad.mit.edu	37	2	219825432	219825432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CDK5R2	NM_003936	exon1	c.G890T	p.C297F	.	.	163	3	95	0	.	227
CELSR1	9620	broad.mit.edu;bcgsc.ca	37	22	46772959	46772959	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CELSR1	NM_014246	exon24	c.C7583T	p.P2528L	.	.	59	28	77	1	.	525
CEP78	84131	hgsc.bcm.edu	37	9	80861605	80861605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CEP78	NM_001098802	exon6	c.G799T	p.G267C	.	.	76	4	64	0	.	69
CHDH	55349	hgsc.bcm.edu	37	3	53857939	53857939	+	Missense_Mutation	SNP	C	C	T	rs180916900	by1000genomes	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CHDH	NM_018397	exon3	c.G97A	p.A33T	.	.	4	4	0	0	C|0.999;T|0.001	91
CHUK	1147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101953098	101953098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CHUK	NM_001278	exon19	c.G2065A	p.E689K	.	.	119	24	115	0	.	961
CLDN4	1364	bcgsc.ca	37	7	73245694	73245694	+	Missense_Mutation	SNP	G	G	C	rs199697067	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLDN4	NM_001305	exon1	c.G163C	p.V55L	.	.	274	164	150	3	G|0.999;A|0.001	514
CLEC16A	23274	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11114147	11114147	+	Silent	SNP	C	C	T	rs80034801	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLEC16A	NM_015226	exon11	c.C1401T	p.A467A	.	.	187	72	154	1	C|0.989;T|0.011	92
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45488541	45488541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLPTM1	NM_001294	exon6	c.G652A	p.A218T	.	.	100	27	115	0	.	91
CLTC	1213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57754422	57754422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CLTC	NM_004859	exon17	c.C2669T	p.P890L	.	.	105	37	107	1	.	835
COL4A5	1287	bcgsc.ca	37	X	107829907	107829907	+	Silent	SNP	G	G	C	rs2272945	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	COL4A5	NM_000495	exon19	c.G1095C	p.G365G	.	.	128	5	137	2	G|0.873;C|0.127	133
CRBN	51185	broad.mit.edu;bcgsc.ca	37	3	3221334	3221334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CRBN	NM_001173482	exon1	c.A38G	p.N13S	.	.	182	69	166	2	.	91
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152382192	152382192	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CRNN	NM_016190	exon3	c.G1366C	p.D456H	.	.	321	33	225	0	.	93
CT49	404663	bcgsc.ca	37	5	12794700	12794700	+	RNA	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	.	.	.	.	.	.	36	9	18	0	.	.
CTU2	348180	ucsc.edu;bcgsc.ca	37	16	88780118	88780118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CTU2	NM_001012759	exon9	c.A937G	p.K313E	.	.	168	65	169	2	.	23
CWF19L1	55280	ucsc.edu;bcgsc.ca	37	10	101996663	101996663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	CWF19L1	NM_018294	exon12	c.G1318A	p.A440T	.	.	172	19	187	2	.	90
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6650989	6650989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DCHS1	NM_003737	exon11	c.A4949G	p.Q1650R	.	.	66	9	58	0	.	73
DEDD	9191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161091967	161091967	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DEDD	NM_001039711	exon5	c.G927C	p.L309L	.	.	212	69	220	1	.	90
DHX9	1660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182852766	182852766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DHX9	NM_001357	exon26	c.G3256A	p.D1086N	.	.	111	31	118	1	.	92
DIS3L2	129563	bcgsc.ca	37	2	233199346	233199346	+	Silent	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DIS3L2	NM_152383	exon19	c.T2295C	p.S765S	.	.	272	82	250	1	.	136
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231858293	231858293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	DISC1	NM_001164550	exon5	c.A1252G	p.N418D	.	.	125	12	121	0	.	91
ECEL1	9427	ucsc.edu;bcgsc.ca	37	2	233348748	233348748	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ECEL1	NM_004826	exon7	c.T1370A	p.F457Y	.	.	439	152	378	2	.	90
ENKD1	84080	ucsc.edu;bcgsc.ca	37	16	67697652	67697652	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_032140	exon5	c.C651T	p.S217S	.	.	130	44	148	2	.	.
EP400	57634	hgsc.bcm.edu	37	12	132547132	132547132	+	Silent	SNP	G	G	A	rs149369604	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	EP400	NM_015409	exon47	c.G8220A	p.Q2740Q	.	.	280	16	252	0	G|0.996;A|0.004	520
EP400	57634	hgsc.bcm.edu;broad.mit.edu	37	12	132547099	132547099	+	Silent	SNP	G	G	A	rs145603866	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	EP400	NM_015409	exon47	c.G8187A	p.Q2729Q	.	.	202	14	173	0	G|0.997;A|0.003	520
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568956	103568956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	EXOC3L4	NM_001077594	exon2	c.C896T	p.P299L	.	.	5	4	2	0	.	23
FAM186B	84070	broad.mit.edu	37	12	49994181	49994181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FAM186B	NM_032130	exon4	c.G1242T	p.E414D	.	.	137	8	145	0	.	91
FAM205A	259308	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34724216	34724216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001141917	exon4	c.G3021C	p.M1007I	.	.	314	79	225	1	.	.
FAT3	120114	ucsc.edu;mdanderson.org	37	11	92531022	92531022	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FAT3	NM_001008781	exon9	c.A4843T	p.K1615X	.	.	177	42	212	2	.	73
FHDC1	85462	broad.mit.edu	37	4	153864380	153864380	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FHDC1	NM_033393	exon1	c.C171T	p.S57S	.	.	36	4	41	0	.	136
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216249663	216249663	+	Missense_Mutation	SNP	G	G	T	rs202245868	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	FN1	NM_212482	exon29	c.C4649A	p.A1550E	.	.	348	42	377	0	G|0.999;A|0.000	584
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101608380	101608380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GALNT12	NM_024642	exon9	c.A1580G	p.E527G	.	.	252	44	257	0	.	92
GAREML	150946	bcgsc.ca	37	2	26410484	26410484	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001168241	exon6	c.C1983A	p.G661G	.	.	136	53	128	4	.	.
GLYATL1	92292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58722261	58722261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GLYATL1	NM_080661	exon5	c.G298A	p.D100N	.	.	150	35	225	0	.	91
GOLGA2	2801	bcgsc.ca	37	9	131027963	131027963	+	Silent	SNP	A	A	G	rs12335848	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GOLGA2	NM_004486	exon11	c.T753C	p.S251S	.	.	81	5	98	1	A|0.914;G|0.086	91
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117113958	117113958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GPRC6A	NM_148963	exon6	c.A2128G	p.T710A	.	.	103	15	110	0	.	96
GRAMD4	23151	broad.mit.edu	37	22	47072552	47072552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GRAMD4	NM_015124	exon17	c.C1619T	p.P540L	.	.	42	6	41	2	.	23
GREB1	9687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	11752722	11752722	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GREB1	NM_014668	exon19	c.G3108A	p.G1036G	.	.	174	39	199	1	.	91
GRIN2A	2903	broad.mit.edu	37	16	9858783	9858783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	GRIN2A	NM_000833	exon14	c.G2618T	p.G873V	.	.	85	4	77	0	.	349
HDAC7	51564	ucsc.edu;bcgsc.ca	37	12	48185424	48185424	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	HDAC7	NM_015401	exon15	c.C1878T	p.L626L	.	.	282	102	261	4	.	289
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	84222134	84222134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	HPSE	NM_001098540	exon11	c.G1451A	p.G484E	.	.	70	15	88	0	.	227
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57181429	57181429	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon8	c.G1761A	p.S587S	.	.	32	14	24	0	.	70
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57164398	57164398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA1211	NM_020722	exon4	c.G3A	p.M1I	.	.	64	12	84	0	.	70
KIAA2018	205717	broad.mit.edu	37	3	113378955	113378955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIAA2018	NM_001009899	exon7	c.C1574A	p.P525Q	.	.	161	5	150	1	.	93
KIF16B	55614	broad.mit.edu;bcgsc.ca	37	20	16410519	16410523	+	Frame_Shift_Del	DEL	ATAAG	ATAAG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	ATAAG	ATAAG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIF16B	NM_001199865	exon13	c.1407_1411del	p.469_471del	.	.	21	7	26	0	.	291
KIF21A	55605	broad.mit.edu	37	12	39726467	39726467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KIF21A	NM_001173464	exon20	c.C2782A	p.R928S	.	.	127	3	145	1	.	97
KLHL15	80311	broad.mit.edu	37	X	24006422	24006422	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KLHL15	NM_030624	exon4	c.G1431A	p.A477A	.	.	138	5	139	0	.	131
KLHL32	114792	broad.mit.edu	37	6	97533184	97533184	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KLHL32	NM_052904	exon6	c.C594A	p.R198R	.	.	39	9	44	1	.	94
KLRC4-KLRK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10531200	10531200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001199805	exon11	c.A382G	p.M128V	.	.	60	23	93	0	.	.
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	68	21	48	0	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	70	19	51	0	.	96
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	105	3	82	1	.	92
LAMTOR5	10542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	110950487	110950487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_006402	exon1	c.T2C	p.M1T	.	.	132	28	137	0	.	.
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48925801	48925801	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LHCGR	NM_000233	exon9	c.G819A	p.L273L	.	.	64	5	74	0	.	589
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76381696	76381696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LMO7	NM_015842	exon7	c.C578A	p.T193N	.	.	84	39	86	0	.	586
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14274081	14274081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN1	NM_001008701	exon6	c.C547T	p.R183C	.	.	160	37	134	0	.	523
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62599267	62599267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LPHN3	NM_015236	exon5	c.G1190T	p.R397I	.	.	113	13	142	0	.	508
LPPR3	0	hgsc.bcm.edu	37	19	815319	815319	+	Silent	SNP	C	C	T	rs735657		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001270366	exon4	c.G270A	p.V90V	.	.	11	4	0	0	C|0.975;T|0.025	.
LRIG1	26018	ucsc.edu;bcgsc.ca	37	3	66436448	66436448	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LRIG1	NM_015541	exon13	c.C1746G	p.H582Q	.	.	285	100	293	3	.	230
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	86001094	86001094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	LRIT1	NM_015613	exon1	c.G102T	p.M34I	.	.	181	70	153	0	.	90
MAN2C1	4123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75652525	75652525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MAN2C1	NM_001256494	exon14	c.C1612T	p.R538W	.	.	72	30	101	1	.	90
MAP2	4133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210574887	210574887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MAP2	NM_002374	exon12	c.G4982A	p.R1661Q	.	.	150	21	171	1	.	591
MARCH7	64844	ucsc.edu	37	2	160604715	160604715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MARCH7	NM_022826	exon5	c.A914G	p.N305S	.	.	69	25	56	2	.	68
METTL21C	196541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	103339396	103339396	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	METTL21C	NM_001010977	exon3	c.294delG	p.L98fs	.	.	67	10	74	0	.	90
MKI67	4288	bcgsc.ca	37	10	129901077	129901077	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MKI67	NM_002417	exon13	c.C9027T	p.T3009T	.	.	154	45	189	5	.	519
MLL3	58508	bcgsc.ca	37	7	151927015	151927015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MLL3	NM_170606	exon18	c.G2969T	p.S990I	.	.	820	74	988	3	.	1398
MLL3	58508	broad.mit.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MLL3	NM_170606	exon20	c.T3309A	p.C1103X	.	.	227	5	299	3	.	1398
MMP2	4313	broad.mit.edu;bcgsc.ca	37	16	55513476	55513476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MMP2	NM_004530	exon1	c.G85A	p.A29T	.	.	68	5	74	1	.	1149
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	62926222	62926222	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MON2	NM_015026	exon12	c.G1405T	p.E469X	.	.	124	19	122	0	.	514
MRPL32	64983	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	42976921	42976921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MRPL32	NM_031903	exon3	c.A313G	p.N105D	.	.	251	67	167	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9060557	9060557	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MUC16	NM_024690	exon3	c.C26889T	p.S8963S	.	.	305	65	308	0	.	566
MUC4	4585	bcgsc.ca	37	3	195515094	195515094	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MUC4	NM_018406	exon2	c.C3357T	p.T1119T	.	.	352	20	258	10	.	90
MUC5B	727897	ucsc.edu	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_002458	exon17	c.A2034G	p.V678V	.	.	56	6	65	3	.	.
MYF6	4618	broad.mit.edu	37	12	81101656	81101656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYF6	NM_002469	exon1	c.G158A	p.G53E	.	.	74	4	112	0	.	90
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108127246	108127246	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYH15	NM_014981	exon33	c.A4561C	p.I1521L	.	.	108	25	88	0	.	73
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26400784	26400784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYO18B	NM_032608	exon42	c.C6433G	p.R2145G	.	.	162	55	195	3	.	142
MYO3A	53904	bcgsc.ca	37	10	26446312	26446312	+	Missense_Mutation	SNP	G	G	A	rs3758449	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	MYO3A,NS,carcinoma,-1	MYO3A	NM_017433	exon26	c.G2867A	p.S956N	.	.	166	7	179	1	G|0.512;N|0.000	1007
MYOM1	8736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3083787	3083787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	MYOM1	NM_003803	exon33	c.A4484T	p.N1495I	.	.	63	9	41	0	.	94
OBSL1	23363	ucsc.edu;bcgsc.ca	37	2	220421321	220421321	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OBSL1	NM_001173431	exon13	c.C4191T	p.A1397A	.	.	324	115	267	5	.	71
OCA2	4948	broad.mit.edu;ucsc.edu	37	15	28230305	28230305	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OCA2	NM_000275	exon13	c.G1269A	p.W423X	.	.	126	58	146	1	.	135
OR10K1	391109	bcgsc.ca	37	1	158435604	158435604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OR10K1	NM_001004473	exon1	c.C253A	p.L85M	.	.	549	213	502	7	.	69
OR2H2	7932	broad.mit.edu	37	6	29556520	29556520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OR2H2	NM_007160	exon1	c.G799C	p.E267Q	.	.	518	12	486	0	.	22
OR51G1	79324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4945247	4945247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OR51G1	NM_001005237	exon1	c.C323A	p.T108N	.	.	88	42	100	1	.	70
OTUD5	55593	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	48814825	48814825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	OTUD5	NM_001136157	exon1	c.T8C	p.I3T	.	.	55	43	47	0	.	541
PBX1	5087	bcgsc.ca	37	1	164529120	164529120	+	Missense_Mutation	SNP	G	G	A	rs2275558	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PBX1	NM_001204963	exon1	c.G61A	p.G21S	.	.	45	4	48	0	G|0.695;A|0.305	659
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	58206732	58206732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDH17	NM_001040429	exon1	c.C52A	p.L18I	.	.	98	23	103	0	.	97
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140745937	140745937	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PCDHGA5	NM_032054	exon1	c.C2040A	p.T680T	.	.	191	40	174	0	.	35
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21153477	21153477	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PI4KA	NM_058004	exon16	c.C1908T	p.P636P	.	.	64	17	60	0	.	454
PKP1	5317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201291111	201291111	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PKP1	NM_000299	exon9	c.G1416A	p.V472V	.	.	113	18	119	0	.	92
POTEG	404785	bcgsc.ca	37	14	19553584	19553584	+	Silent	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	POTEG	NM_001005356	exon1	c.A168T	p.T56T	.	.	1124	119	1503	5	.	1
POTEM	641455	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	20020053	20020053	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001145442	exon1	c.A168T	p.T56T	.	.	475	67	578	5	.	.
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134363453	134363453	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PRRC2B	NM_013318	exon27	c.C6195T	p.A2065A	.	.	113	14	108	0	.	24
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43259369	43259369	+	Silent	SNP	C	C	T	rs144938138	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PSG8	NM_001130167	exon4	c.G759A	p.E253E	.	.	121	36	132	2	C|1.000;G|0.000	90
PTPRM	5797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	8143667	8143667	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRM	NM_001105244	exon14	c.C2190G	p.V730V	.	.	128	73	146	2	.	228
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	157959802	157959802	+	Missense_Mutation	SNP	G	G	A	rs139278439	alternate_allele	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRN2	NM_130843	exon6	c.C731T	p.A244V	.	.	78	34	65	0	G|0.999;T|0.000	295
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40980875	40980875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	PTPRT	NM_007050	exon10	c.C1611G	p.S537R	.	.	86	15	101	0	.	664
RALYL	138046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	85799990	85799990	+	Silent	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RALYL	NM_001100391	exon8	c.T876C	p.D292D	.	.	229	37	109	1	.	23
RALYL	138046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	85799965	85799965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RALYL	NM_001100391	exon8	c.C851T	p.T284I	.	.	278	18	135	0	.	23
ROR1	4919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	64624861	64624861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ROR1	NM_005012	exon8	c.G1372T	p.A458S	.	.	97	43	120	1	.	1536
RP1L1	94137	hgsc.bcm.edu	37	8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	rs200622636	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RP1L1	NM_178857	exon4	c.A5618G	p.D1873G	.	.	54	4	79	0	T|0.993;C|0.007	139
RP1L1	94137	hgsc.bcm.edu	37	8	10466010	10466010	+	Missense_Mutation	SNP	C	C	A	rs181718385	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	RP1L1	NM_178857	exon4	c.G5598T	p.E1866D	.	.	56	5	79	0	C|0.991;A|0.008	139
SACM1L	22908	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45754687	45754687	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SACM1L	NM_014016	exon6	c.A542T	p.E181V	.	.	18	7	21	0	.	91
SATB1	6304	ucsc.edu;bcgsc.ca	37	3	18390856	18390856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SATB1	NM_001195470	exon12	c.C2194G	p.L732V	.	.	183	31	175	2	.	228
SBF2	81846	hgsc.bcm.edu	37	11	9829584	9829584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SBF2	NM_030962	exon32	c.C4406A	p.A1469D	.	.	102	5	96	0	.	93
SCN8A	6334	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	52115518	52115518	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SCN8A	NM_014191	exon12	c.C1824T	p.R608R	.	.	15	9	20	0	.	29
SCRN1	9805	bcgsc.ca	37	7	29966124	29966124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SCRN1	NM_001145514	exon7	c.C1090T	p.R364W	.	.	218	59	205	4	.	92
SETD1B	23067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122252796	122252796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SETD1B	NM_015048	exon6	c.C2675T	p.A892V	.	.	119	30	130	0	.	86
SGSM2	9905	ucsc.edu	37	17	2279096	2279096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SGSM2	NM_014853	exon18	c.G2411T	p.S804I	.	.	68	1	42	0	.	68
SHCBP1	79801	hgsc.bcm.edu	37	16	46651615	46651615	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SHCBP1	NM_024745	exon3	c.G318A	p.L106L	.	.	99	4	111	0	.	154
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	43310324	43310324	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC14A1	NM_001146037	exon2	c.C207A	p.P69P	.	.	165	12	104	0	.	515
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107663412	107663412	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC35F2	NM_017515	exon8	c.A1054G	p.S352G	.	.	79	20	120	0	.	90
SLC7A5	8140	broad.mit.edu	37	16	87885441	87885441	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLC7A5	NM_003486	exon2	c.G553C	p.V185L	.	.	152	4	113	0	.	90
SLX4	84464	bcgsc.ca	37	16	3656625	3656625	+	Missense_Mutation	SNP	G	G	A	rs79842542	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SLX4	NM_032444	exon3	c.C610T	p.R204C	.	.	252	8	234	0	G|0.937;A|0.063	94
SMARCC2	6601	bcgsc.ca	37	12	56563450	56563450	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SMARCC2	NM_139067	exon25	c.G2578A	p.E860K	.	.	90	32	82	2	.	229
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118629516	118629516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SPAG17	NM_206996	exon11	c.G1475T	p.C492F	.	.	125	25	177	0	.	158
SPATA31C2	645961	ucsc.edu;bcgsc.ca	37	9	90746755	90746755	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001166137	exon4	c.G1197A	p.R399R	.	.	144	56	116	1	.	.
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	196	60	121	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	207	30	154	1	A|0.010;C|0.001;T|0.988	45
SPTBN2	6712	broad.mit.edu	37	11	66461791	66461791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SPTBN2	NM_006946	exon21	c.C4322A	p.A1441E	.	.	135	5	124	0	.	155
ST8SIA4	7903	ucsc.edu;bcgsc.ca	37	5	100191909	100191909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ST8SIA4	NM_005668	exon4	c.G695T	p.G232V	.	.	144	56	214	2	.	153
STAG2	10735	bcgsc.ca	37	X	123182903	123182903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	STAG2	NM_001042749	exon10	c.A868G	p.K290E	.	.	214	160	232	5	.	134
STRADA	92335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61791458	61791458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	STRADA	NM_001003787	exon5	c.C134T	p.A45V	.	.	132	64	106	1	.	547
SULT2A1	6822	bcgsc.ca	37	19	48382316	48382316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	SULT2A1	NM_003167	exon4	c.C544A	p.L182M	.	.	114	40	116	4	.	92
TACR3	6870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	104511152	104511152	+	Splice_Site	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TACR3	NM_001059	exon6	c.1086-1G>C	.	.	.	77	14	105	0	.	525
TARS2	80222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150461451	150461451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TARS2	NM_001271896	exon3	c.C275G	p.A92G	.	.	101	17	72	0	.	91
TBC1D20	128637	ucsc.edu;bcgsc.ca	37	20	422333	422333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TBC1D20	NM_144628	exon5	c.G525T	p.R175S	.	.	193	65	206	3	.	90
TEAD1	7003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	12958680	12958680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TEAD1	NM_021961	exon13	c.G1192A	p.E398K	.	.	152	23	160	0	.	90
TENM2	57451	bcgsc.ca	37	5	167517677	167517677	+	Silent	SNP	C	C	T	rs147074209	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001122679	exon8	c.C1614T	p.A538A	.	.	309	126	396	7	C|0.997;T|0.003	.
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	120475751	120475751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TLR4	NM_138554	exon3	c.C1345T	p.L449F	.	.	83	11	123	0	.	577
TMEM109	79073	bcgsc.ca	37	11	60689445	60689445	+	Silent	SNP	T	T	C	rs555835	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TMEM109	NM_024092	exon4	c.T540C	p.P180P	.	.	59	5	67	0	T|0.358;C|0.642	90
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74355033	74355033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TMEM2	NM_001135820	exon5	c.T1150C	p.Y384H	.	.	85	21	88	0	.	92
TNPO1	3842	hgsc.bcm.edu	37	5	72144312	72144312	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TNPO1	NM_002270	exon2	c.G116T	p.R39I	.	.	60	4	49	0	.	228
TOX	9760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59750851	59750851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TOX	NM_014729	exon5	c.G713A	p.R238Q	.	.	37	5	22	0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7577082	7577082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G856A	p.E286K	.	.	107	66	91	1	.	70225
TRAM1L1	133022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	118005773	118005789	+	Frame_Shift_Del	DEL	CAAGATAAACACAATGG	CAAGATAAACACAATGG	-	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	CAAGATAAACACAATGG	CAAGATAAACACAATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRAM1L1	NM_152402	exon1	c.761_777del	p.254_259del	.	.	60	14	116	0	.	90
TRH	7200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	129695783	129695783	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRH	NM_007117	exon3	c.G453T	p.R151R	.	.	142	50	131	1	.	91
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92470462	92470462	+	Silent	SNP	C	C	T	rs35798420	byfrequency	TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TRIP11	NM_004239	exon11	c.G3858A	p.Q1286Q	.	.	69	18	121	0	C|0.996;T|0.004	1400
TTLL1	25809	broad.mit.edu	37	22	43442445	43442445	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TTLL1	NM_012263	exon10	c.T1113C	p.P371P	.	.	333	5	380	0	.	92
TXNDC2	84203	hgsc.bcm.edu;broad.mit.edu	37	18	9887134	9887134	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	TXNDC2	NM_001098529	exon2	c.A658T	p.K220X	.	.	143	7	142	0	.	92
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100020041	100020041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	UBAC2	NM_001144072	exon8	c.G808A	p.G270R	.	.	142	45	153	0	.	91
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	216373074	216373074	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	USH2A	NM_007123	exon17	c.G3706C	p.V1236L	.	.	99	41	108	1	.	115
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216173842	216173842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	USH2A	NM_206933	exon33	c.A6388G	p.N2130D	.	.	174	22	161	1	.	115
VDAC2	7417	broad.mit.edu	37	10	76980634	76980634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VDAC2	NM_001184783	exon8	c.T535C	p.Y179H	.	.	524	5	457	0	.	93
VEZF1	7716	hgsc.bcm.edu;ucsc.edu	37	17	56056622	56056622	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VEZF1	NM_007146	exon5	c.G1029A	p.Q343Q	.	.	244	34	189	0	.	136
VN1R4	317703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53770602	53770602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	VN1R4	NM_173857	exon1	c.T317G	p.V106G	.	.	334	42	340	1	.	92
ZBED1	9189	broad.mit.edu	37	X	2407852	2407852	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZBED1	NM_001171135	exon2	c.C909T	p.F303F	.	.	107	5	77	0	.	40
ZBTB43	23099	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595854	129595854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZBTB43	NM_001135776	exon2	c.G1066A	p.G356R	.	.	55	14	55	1	.	91
ZFAT	57623	broad.mit.edu	37	8	135649907	135649907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZFAT	NM_001174157	exon3	c.A245G	p.K82R	.	.	341	6	180	0	.	90
ZNF214	7761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7021610	7021610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF214	NM_013249	exon3	c.T1304A	p.V435E	.	.	100	30	118	1	.	91
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22843682	22843682	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF280B	NM_080764	exon4	c.G42A	p.Q14Q	.	.	293	45	316	0	.	70
ZNF43	7594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22002022	22002022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF43	NM_001256653	exon2	c.G32T	p.G11V	.	.	118	48	122	2	.	154
ZNF727	442319	broad.mit.edu;bcgsc.ca	37	7	63538068	63538068	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001159522	exon4	c.A641T	p.N214I	.	.	80	52	65	1	.	.
ZNF738	148203	ucsc.edu	37	19	21563781	21563781	+	RNA	SNP	A	A	T	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF738	.	.	.	.	.	.	25	12	17	0	.	68
ZNF791	163049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12739344	12739344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	ZNF791	NM_153358	exon4	c.G1001A	p.G334E	.	.	52	20	38	0	.	92
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	NM_001144989	exon3	c.T2046C	p.H682H	.	.	155	1	162	0	.	.
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	128135050	128135051	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-FV-A4ZP-01A-12D-A25V-10	TCGA-FV-A4ZP-11A-12D-A25V-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34a92167-000d-4968-bfc4-0a818857cbd4	d898cddf-8721-4cee-8a60-926c4c0dfc7c	.	.	.	.	.	p.P246T	.	.	.	.	.	.	.	
