Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM29	11086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	175897585	175897585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ADAM29	NM_001130703	exon4	c.T909A	p.F303L	.	.	215	64	241	1	.	729
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106968959	106968959	+	Silent	SNP	G	G	T	rs199971648		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AIM1	NM_001624	exon2	c.G2652T	p.P884P	.	.	99	29	98	0	G|0.999;T|0.000	139
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	42872928	42872928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AKAP11	NM_016248	exon7	c.A611G	p.N204S	.	.	56	22	87	0	.	227
APOH	350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	64210647	64210647	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	APOH	NM_000042	exon7	c.T906C	p.N302N	.	.	187	37	196	0	.	90
ARMC9	80210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	232209780	232209780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ARMC9	NM_025139	exon21	c.G1972A	p.G658S	.	.	92	6	77	0	.	91
ASNS	440	hgsc.bcm.edu	37	7	97482459	97482459	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ASNS	NM_133436	exon12	c.C1389A	p.L463L	.	.	78	4	108	0	.	91
ATP12A	479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25265114	25265114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ATP12A	NM_001185085	exon8	c.C812T	p.P271L	.	.	200	60	241	0	.	137
ATP1A4	480	hgsc.bcm.edu;bcgsc.ca	37	1	160136811	160136811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ATP1A4	NM_144699	exon9	c.G1300T	p.G434C	.	.	79	4	65	0	.	94
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	396951	396951	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	AXIN1	NM_181050	exon2	c.G75T	p.V25V	.	.	91	33	84	0	.	684
B2M	567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	45007635	45007635	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	B2M	NM_004048	exon2	c.C82T	p.Q28X	.	.	103	55	69	0	.	93
BAGE3	85318	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_182481	exon3	c.G118A	p.D40N	.	.	354	23	334	6	C|0.750;T|0.250	.
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75263466	75263466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	BCAR1	NM_001170714	exon8	c.G2694T	p.E898D	.	.	12	5	45	0	.	1145
C21orf33	8209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45553649	45553649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C21orf33	NM_198155	exon1	c.G70A	p.G24S	.	.	13	9	54	0	.	91
C6orf70	55780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170159125	170159125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	C6orf70	NM_018341	exon6	c.G569T	p.W190L	.	.	287	77	261	0	.	91
CACNB4	785	bcgsc.ca	37	2	152955482	152955482	+	Missense_Mutation	SNP	G	G	C	rs200662010		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CACNB4	NM_001145798	exon1	c.C44G	p.P15R	.	.	71	4	89	0	G|0.999;C|0.000	24
CACTIN	58509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3623771	3623771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_021231	exon2	c.G557T	p.G186V	.	.	110	40	177	0	.	.
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115085403	115085403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CADM1	NM_014333	exon7	c.G919T	p.D307Y	.	.	477	131	546	0	.	92
CADM1	23705	mdanderson.org	37	11	115375044	115375044	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CADM1	NM_014333	exon1	c.G69T	p.G23G	.	.	18	4	26	1	.	92
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46792623	46792623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CELSR1	NM_014246	exon13	c.G5722T	p.V1908L	.	.	63	27	113	0	.	525
CFTR	1080	ucsc.edu;bcgsc.ca	37	7	117176688	117176688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CFTR	NM_000492	exon7	c.G830T	p.W277L	.	.	36	4	25	0	.	518
COQ10B	80219	broad.mit.edu	37	2	198327370	198327370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	COQ10B	NM_025147	exon3	c.G362T	p.C121F	.	.	118	4	130	1	.	90
CSDAP1	440359	ucsc.edu	37	16	31580185	31580185	+	RNA	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	.	.	.	.	.	.	14	6	13	0	.	.
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113651094	113651094	+	Missense_Mutation	SNP	G	G	C	rs145905619	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	CSMD3	NM_198123	exon21	c.C3357G	p.D1119E	.	.	159	98	108	1	G|1.000;A|0.000	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	G	rs121913400	bycluster	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.C98G	p.S33C	.	.	287	76	306	0	.	24361
DGKZ	8525	broad.mit.edu	37	11	46395720	46395720	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DGKZ	NM_001105540	exon16	c.T1904G	p.V635G	.	.	150	5	162	0	.	676
DIAPH2	1730	hgsc.bcm.edu	37	X	96369847	96369847	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DIAPH2	NM_007309	exon21	c.G2472T	p.L824L	.	.	83	4	100	0	.	133
DIDO1	11083	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61512904	61512904	+	Silent	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DIDO1	NM_001193369	exon16	c.G4404T	p.A1468A	.	.	167	74	154	1	.	96
DNAH14	127602	bcgsc.ca	37	1	225525787	225525787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DNAH14	NM_001373	exon66	c.G10057T	p.G3353C	.	.	83	5	80	1	.	23
DNAJC7	7266	broad.mit.edu	37	17	40135645	40135645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DNAJC7	NM_003315	exon10	c.C1020A	p.D340E	.	.	210	3	263	0	.	227
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	134012417	134012417	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DPYSL4	NM_006426	exon8	c.C753A	p.Y251X	.	.	189	84	247	1	.	514
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	DSPP	NM_014208	exon5	c.C3213T	p.D1071D	.	.	412	15	492	9	.	90
EBF3	253738	hgsc.bcm.edu;bcgsc.ca	37	10	131676057	131676057	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EBF3	NM_001005463	exon7	c.611delA	p.N204fs	.	.	78	23	94	0	.	91
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EEF1B2	NM_021121	exon3	c.A127G	p.S43G	.	.	186	5	211	1	.	227
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EEF1B2	NM_021121	exon3	c.G135A	p.P45P	.	.	194	5	219	1	.	227
ELF1	1997	hgsc.bcm.edu;bcgsc.ca	37	13	41525513	41525513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ELF1	NM_001145353	exon3	c.C313A	p.L105I	.	.	66	4	85	0	.	227
EMR2	30817	bcgsc.ca;mdanderson.org	37	19	14876507	14876507	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EMR2	NM_001271052	exon7	c.C744T	p.H248H	.	.	1060	202	1200	4	.	524
EPB41L4B	54566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112004035	112004035	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPB41L4B	NM_018424	exon16	c.C1464T	p.D488D	.	.	231	78	225	0	.	92
EPHA7	2045	ucsc.edu;mdanderson.org	37	6	93982124	93982124	+	Missense_Mutation	SNP	G	G	T	rs345713	byfrequency;alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPHA7	NM_004440	exon6	c.T1341A	p.S447R	.	.	208	63	191	0	G|0.910;A|0.090	1453
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55598089	55598089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EPS8L1	NM_133180	exon18	c.C1785G	p.F595L	.	.	49	10	67	0	.	115
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74006234	74006234	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EVPL	NM_001988	exon22	c.G3052C	p.E1018Q	.	.	120	73	182	0	.	93
EXOC5	10640	broad.mit.edu;ucsc.edu;mdanderson.org	37	14	57713485	57713485	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	EXOC5	NM_006544	exon3	c.C214T	p.Q72X	.	.	125	39	122	1	.	137
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153253841	153253841	+	Missense_Mutation	SNP	G	G	T	rs112892452	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	FBXW7,rectum,adenoma,0	FBXW7	NM_033632	exon6	c.C892A	p.P298T	.	.	124	36	109	0	G|0.500;A|0.500	6296
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79166410	79166410	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	FRAS1	NM_001166133	exon4	c.C240T	p.A80A	.	.	140	47	145	0	.	68
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	FRG1B	.	.	.	.	.	.	947	38	864	20	.	22
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	171700595	171700595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GAD1	NM_000817	exon7	c.C679A	p.Q227K	.	.	182	42	213	0	.	91
GLTSCR1	29998	hgsc.bcm.edu	37	19	48184474	48184474	+	Missense_Mutation	SNP	C	C	T	rs3745762		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GLTSCR1	NM_015711	exon6	c.C2047T	p.P683S	.	.	6	6	0	0	C|0.684;T|0.316	48
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	113935464	113935464	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GPAM	NM_020918	exon6	c.G307T	p.G103X	.	.	79	29	64	0	.	92
GRM5	2915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88330465	88330465	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	GRM5	NM_000842	exon6	c.G1450A	p.V484I	.	.	148	50	145	0	.	949
HAPLN1	1404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82937472	82937472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HAPLN1	NM_001884	exon5	c.G908T	p.R303L	.	.	269	66	216	0	.	580
HERC6	55008	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89318063	89318063	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HERC6	NM_017912	exon7	c.A948G	p.P316P	.	.	176	57	166	2	.	658
HIVEP3	59269	broad.mit.edu	37	1	42046138	42046138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	HIVEP3	NM_024503	exon4	c.C4331A	p.T1444N	.	.	131	3	130	0	.	157
IGDCC3	9543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65623843	65623843	+	Missense_Mutation	SNP	C	C	T	rs148656626	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	IGDCC3	NM_004884	exon8	c.G1303A	p.V435M	.	.	132	30	162	0	C|0.999;T|0.001	93
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	213914450	213914450	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	IKZF2	NM_016260	exon5	c.C561T	p.L187L	.	.	81	30	80	0	.	226
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5072525	5072525	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK2	NM_004972	exon13	c.A1675C	p.I559L	.	.	78	22	91	0	.	75307
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17947999	17947999	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	JAK3	NM_000215	exon13	c.G1725A	p.L575L	.	.	130	26	94	0	.	2418
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86709144	86709144	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KDM3A	NM_001146688	exon17	c.G2604A	p.T868T	.	.	177	54	169	0	.	291
KIAA1841	84542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61324923	61324923	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KIAA1841	NM_032506	exon12	c.G1301T	p.G434V	.	.	165	43	204	0	.	90
KIR3DX1	90011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55047101	55047101	+	RNA	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KIR3DX1	.	.	.	.	.	.	121	19	107	0	.	91
KLC1	3831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104153537	104153537	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLC1	NM_001130107	exon14	c.A1770G	p.P590P	.	.	76	18	111	0	.	90
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	87788861	87788861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHDC4	NM_001184856	exon4	c.G308A	p.R103K	.	.	237	67	238	0	.	182
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183209982	183209982	+	Silent	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KLHL6	NM_130446	exon7	c.G1599C	p.P533P	.	.	46	38	106	0	.	93
KPNA2	3838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	66038335	66038335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KPNA2	NM_002266	exon5	c.A437G	p.N146S	.	.	137	95	169	1	.	560
KRTAP4-3	85290	bcgsc.ca	37	17	39324104	39324104	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KRTAP4-3	NM_033187	exon1	c.T321C	p.S107S	.	.	326	20	412	13	.	22
KRTAP4-3	85290	bcgsc.ca;mdanderson.org	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	144	63	173	0	A|0.046;T|0.954	22
LRRC33	375387	hgsc.bcm.edu	37	3	196387716	196387720	+	Frame_Shift_Del	DEL	TGGGC	TGGGC	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	TGGGC	TGGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1202_1206del	p.401_402del	.	.	38	0	52	0	.	92
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196387716	196387719	+	Frame_Shift_Del	DEL	TGGG	TGGG	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	TGGG	TGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1202_1205del	p.401_402del	.	.	38	27	52	0	.	92
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	196387720	196387721	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRC33	NM_198565	exon3	c.1206_1207insA	p.G402fs	.	.	39	28	57	0	.	92
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85441061	85441061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	LRRIQ1	NM_001079910	exon6	c.A491G	p.E164G	.	.	115	23	117	0	.	95
MAB21L1	4081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049768	36049768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MAB21L1	NM_005584	exon1	c.A508T	p.I170F	.	.	174	42	231	0	.	92
MANBA	4126	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103590162	103590162	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MANBA	NM_005908	exon10	c.T1275C	p.D425D	.	.	127	35	152	1	.	91
MAP4K4	9448	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	102480445	102480445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MAP4K4	NM_001242560	exon16	c.A1774G	p.K592E	.	.	148	43	151	1	.	547
MIR892B	100126307	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	145078746	145078746	+	RNA	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	.	.	.	.	.	.	174	107	226	0	.	.
MKI67	4288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	129904790	129904790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MKI67	NM_002417	exon13	c.A5314T	p.R1772W	.	.	238	47	201	1	.	519
MLL	4297	broad.mit.edu	37	11	118375302	118375302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MLL	NM_001197104	exon27	c.G8695T	p.V2899L	.	.	165	5	179	0	.	1255
MN1	4330	bcgsc.ca	37	22	28193380	28193380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MN1	NM_002430	exon1	c.C3152A	p.T1051K	.	.	49	4	89	0	.	993
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28193384	28193384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MN1	NM_002430	exon1	c.A3148T	p.S1050C	.	.	51	16	93	0	.	993
MNT	4335	hgsc.bcm.edu	37	17	2290884	2290884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MNT	NM_020310	exon6	c.A1060G	p.K354E	.	.	71	4	107	0	.	227
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108204062	108204062	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	MYH15	NM_014981	exon12	c.C1050A	p.I350I	.	.	121	66	125	0	.	73
NCOA6	23054	broad.mit.edu	37	20	33345439	33345439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NCOA6	NM_014071	exon7	c.A1112C	p.H371P	.	.	194	24	160	11	.	292
NET1	10276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5488742	5488742	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NET1	NM_005863	exon1	c.A14T	p.D5V	.	.	77	10	71	0	.	290
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204937427	204937427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NFASC	NM_015090	exon9	c.G790A	p.A264T	.	.	104	30	132	0	.	139
NFU1	27247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69642381	69642381	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NFU1	NM_001002755	exon5	c.A420T	p.T140T	.	.	217	53	245	0	.	90
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17637675	17637675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	NUP153	NM_005124	exon16	c.A2173G	p.T725A	.	.	338	207	280	0	.	637
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95155381	95155381	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OGN	NM_033014	exon4	c.T414C	p.D138D	.	.	189	71	174	0	.	492
OPLAH	26873	broad.mit.edu;bcgsc.ca	37	8	145107770	145107770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OPLAH	NM_017570	exon22	c.C3052A	p.P1018T	.	.	141	5	160	0	.	68
OR4A47	403253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	48510880	48510880	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	OR4A47	NM_001005512	exon1	c.T536A	p.M179K	.	.	331	77	268	0	.	92
PALM2-AKAP2	445815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	112694224	112694224	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	PALM2-AKAP2,nipple,malignant_melanoma,-1	PALM2-AKAP2	NM_007203	exon6	c.T412A	p.S138T	.	.	84	33	102	0	.	475
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66616778	66616778	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PC	NM_000920	exon21	c.G3211T	p.A1071S	.	.	136	94	155	0	.	228
PCDHB1	29930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140433269	140433269	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PCDHB1	NM_013340	exon1	c.C2214A	p.N738K	.	.	135	36	129	0	.	90
PIN4	5303	bcgsc.ca	37	X	71401614	71401614	+	Missense_Mutation	SNP	C	C	A	rs7058353	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PIN4	NM_001170747	exon1	c.C54A	p.S18R	.	.	183	7	171	2	C|0.217;A|0.783	130
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144991598	144991598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PLEC	NM_201380	exon32	c.T12802G	p.S4268A	.	.	145	21	91	1	.	141
PLEC	5339	ucsc.edu	37	8	144995736	144995736	+	Silent	SNP	G	G	A	rs11777402	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PLEC	NM_201380	exon32	c.C8664T	p.N2888N	.	.	40	4	69	1	G|0.681;A|0.319	141
PSG4	5672	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	43699214	43699214	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PSG4	NM_002780	exon4	c.T921C	p.C307C	.	.	129	24	114	0	.	91
PTPN23	25930	broad.mit.edu	37	3	47448830	47448830	+	Missense_Mutation	SNP	G	G	A	rs201653035		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PTPN23	NM_015466	exon11	c.G896A	p.R299H	.	.	97	5	109	1	G|0.999;A|0.001	227
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	41101120	41101120	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PTPRT	NM_007050	exon8	c.C1236T	p.Y412Y	.	.	231	24	138	0	.	664
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20490545	20490545	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	PUM2	NM_015317	exon9	c.C1159G	p.R387G	.	.	103	36	137	0	.	91
QPCT	25797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37580079	37580079	+	Splice_Site	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	QPCT	NM_012413	exon2	c.267+1G>T	.	.	.	42	20	34	0	.	90
RAB27A	5873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	55527010	55527010	+	Silent	SNP	T	T	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAB27A	NM_183235	exon3	c.A123T	p.T41T	.	.	109	16	92	0	.	228
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	17696823	17696823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RAD51AP2	NM_001099218	exon1	c.G2860T	p.E954X	.	.	123	44	160	0	.	23
REN	5972	bcgsc.ca	37	1	204130452	204130466	+	In_Frame_Del	DEL	GAGGGCACCCAAACA	GAGGGCACCCAAACA	-	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	GAGGGCACCCAAACA	GAGGGCACCCAAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	REN	NM_000537	exon3	c.327_341del	p.109_114del	.	.	92	5	144	0	.	517
RFC5	5985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118456923	118456923	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RFC5	NM_007370	exon2	c.C112G	p.Q38E	.	.	88	24	53	0	.	227
RFX7	64864	broad.mit.edu	37	15	56387050	56387050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RFX7	NM_022841	exon9	c.C2876A	p.T959N	.	.	141	4	101	0	.	90
RGS10	6001	ucsc.edu	37	10	121259638	121259638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RGS10	NM_001005339	exon5	c.T533C	p.I178T	.	.	31	4	30	0	.	226
RGS5	8490	bcgsc.ca	37	1	163122333	163122333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RGS5	NM_001254749	exon4	c.C391A	p.L131I	.	.	58	14	68	1	.	226
RPL3	6122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	39709288	39709288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	RPL3	NM_000967	exon9	c.G1075T	p.A359S	.	.	141	34	141	0	.	154
SERPINA9	327657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94936087	94936087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SERPINA9	NM_175739	exon2	c.C145A	p.P49T	.	.	109	37	119	0	.	226
SH2D2A	9047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156785887	156785887	+	Splice_Site	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SH2D2A	NM_003975	exon3	c.35-1G>A	.	.	.	126	42	152	0	.	90
SHISA9	729993	broad.mit.edu	37	16	13002387	13002387	+	Silent	SNP	C	C	T	rs72782632	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_001145205	exon2	c.C615T	p.D205D	.	.	115	4	113	1	C|0.966;T|0.034	.
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72190403	72190403	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SIPA1L1	NM_015556	exon16	c.C4311T	p.F1437F	.	.	97	32	149	0	.	156
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110752455	110752455	+	Missense_Mutation	SNP	G	G	T	rs145203259	bycluster;byfrequency;alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC22A16	NM_033125	exon7	c.C1440A	p.S480R	.	.	28	14	43	0	G|0.998;C|0.002	91
SLC30A10	55532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220088994	220088994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC30A10	NM_018713	exon4	c.G1255T	p.A419S	.	.	201	56	224	0	.	90
SLC35B2	347734	broad.mit.edu;bcgsc.ca	37	6	44222620	44222620	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SLC35B2	NM_178148	exon4	c.C1122A	p.R374R	.	.	292	7	196	0	.	91
SNAP47	116841	bcgsc.ca	37	1	227954677	227954677	+	Missense_Mutation	SNP	C	C	T	rs17851681	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SNAP47	NM_053052	exon4	c.C1141T	p.R381C	.	.	155	5	192	1	C|0.925;T|0.075	91
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	214354720	214354720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPAG16	NM_024532	exon10	c.C976T	p.P326S	.	.	106	36	97	0	.	188
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220348819	220348819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPEG	NM_005876	exon30	c.C6634T	p.Q2212X	.	.	64	24	158	0	.	383
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54858501	54858501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SPTBN1	NM_003128	exon16	c.A3317G	p.N1106S	.	.	201	61	201	0	.	140
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28022497	28022497	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	SSH2	NM_033389	exon4	c.C256G	p.P86A	.	.	130	74	142	0	.	92
STK33	65975	hgsc.bcm.edu;broad.mit.edu	37	11	8474374	8474374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	STK33	NM_030906	exon9	c.A866G	p.Y289C	.	.	88	5	53	0	.	337
TCTEX1D1	200132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67242056	67242056	+	Silent	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TCTEX1D1	NM_152665	exon4	c.C306T	p.L102L	.	.	144	51	180	0	.	90
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	78380651	78380651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	.	NM_001098816	exon32	c.C6739T	p.R2247W	.	.	256	86	308	1	.	.
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73921159	73921159	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TERF1	NM_017489	exon1	c.G38C	p.R13P	.	.	318	48	241	0	.	228
THAP11	57215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67877084	67877084	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	THAP11	NM_020457	exon1	c.G627T	p.S209S	.	.	19	5	41	0	.	90
TNFRSF18	8784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1139782	1139782	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TNFRSF18	NM_148902	exon3	c.C395A	p.T132K	.	.	84	21	118	0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	C	A	rs193920774	alternate_allele	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	TP53,NS,carcinoma,0	TP53	NM_000546	exon8	c.G797T	p.G266V	.	.	76	39	66	0	.	70225
TRPS1	7227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116427073	116427073	+	Silent	SNP	A	A	G	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	TRPS1	NM_014112	exon7	c.T3063C	p.G1021G	.	.	302	45	170	0	.	229
UNG	7374	hgsc.bcm.edu	37	12	109540650	109540650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	UNG	NM_080911	exon5	c.G540T	p.E180D	.	.	40	4	41	0	.	1083
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216062335	216062335	+	Silent	SNP	G	G	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USH2A	NM_206933	exon41	c.C7656T	p.T2552T	.	.	41	14	45	0	.	115
USP24	23358	broad.mit.edu	37	1	55572963	55572963	+	Missense_Mutation	SNP	G	G	T	rs201975935		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USP24	NM_015306	exon40	c.C4711A	p.R1571S	.	.	156	5	188	0	G|0.998;T|0.002	521
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22084166	22084166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	USP48	NM_001032730	exon2	c.G245T	p.R82M	.	.	79	24	86	0	.	659
VWA1	64856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1372313	1372313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	VWA1	NM_022834	exon2	c.C80T	p.P27L	.	.	127	35	185	0	.	22
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170065609	170065609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	WDR27	NM_182552	exon7	c.G756T	p.Q252H	.	.	150	30	93	0	.	69
WDR59	79726	ucsc.edu	37	16	74942865	74942865	+	Silent	SNP	T	T	C	rs141093453	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	WDR59	NM_030581	exon17	c.A1653G	p.V551V	.	.	92	19	80	6	T|0.976;C|0.024	92
ZCCHC6	79670	bcgsc.ca	37	9	88959938	88959938	+	Silent	SNP	C	C	T	rs791323	byfrequency	TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZCCHC6	NM_024617	exon5	c.G951A	p.L317L	.	.	169	6	188	2	C|0.379;N|0.000	92
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	43322734	43322734	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF318	NM_014345	exon4	c.G2338T	p.G780X	.	.	529	113	335	0	.	157
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62591366	62591366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF512B	NM_020713	exon17	c.A2554G	p.T852A	.	.	56	10	52	0	.	90
ZNF600	162966	broad.mit.edu	37	19	53269206	53269206	+	Silent	SNP	G	G	T	novel		TCGA-FV-A4ZQ-01A-11D-A25V-10	TCGA-FV-A4ZQ-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d02597f8-3ac7-4165-a65f-0e134e5d215b	813ef938-cbe3-456a-ba15-01bca99c2880	.	ZNF600	NM_198457	exon3	c.C1803A	p.T601T	.	.	223	5	162	0	.	90
