Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545702	151545702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AADAC	NM_001086	exon5	c.C942A	p.F314L	.	.	35	4	39	0	.	280
ABCA13	154664	bcgsc.ca	37	7	48237833	48237833	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCA13	NM_152701	exon3	c.164-1G>T	.	.	.	113	5	75	2	.	521
ABCA13	154664	bcgsc.ca	37	7	48511196	48511196	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCA13	NM_152701	exon45	c.G12975A	p.L4325L	.	.	103	5	95	0	.	521
ABCA5	23461	bcgsc.ca	37	17	67280200	67280200	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCA5	NM_018672	exon17	c.C2286T	p.A762A	.	.	136	5	80	0	.	93
ABCA8	10351	bcgsc.ca	37	17	66902272	66902272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCA8	NM_007168	exon17	c.C2191A	p.L731I	.	.	144	6	56	0	.	93
ABCB1	5243	bcgsc.ca	37	7	87196198	87196198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCB1	NM_000927	exon7	c.C433A	p.H145N	.	.	69	4	78	0	.	582
ABCC1	4363	ucsc.edu	37	16	16208755	16208755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC1	NM_004996	exon23	c.A3212G	p.N1071S	.	.	40	4	29	0	.	94
ABCC4	10257	bcgsc.ca	37	13	95735530	95735530	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC4	NM_005845	exon21	c.G2550T	p.V850V	.	.	74	4	93	0	.	515
ABCC8	6833	ucsc.edu;bcgsc.ca	37	11	17464837	17464837	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC8	NM_000352	exon9	c.T1355C	p.L452P	.	.	40	4	28	0	.	91
ABCC9	10060	bcgsc.ca	37	12	22001098	22001098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCC9	NM_005691	exon23	c.A2852G	p.E951G	.	.	94	5	167	1	.	96
ABCD3	5825	bcgsc.ca	37	1	94972193	94972193	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCD3	NM_002858	exon21	c.C1840A	p.R614R	.	.	84	5	58	0	.	91
ABCE1	6059	bcgsc.ca	37	4	146030403	146030403	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABCE1	NM_002940	exon5	c.405+2T>A	.	.	.	21	3	42	0	.	91
ABL2	27	bcgsc.ca	37	1	179112162	179112162	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ABL2	NM_001136000	exon1	c.T18C	p.V6V	.	.	90	4	84	1	.	1081
ACAD10	80724	bcgsc.ca	37	12	112185160	112185160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACAD10	NM_001136538	exon17	c.T2549C	p.V850A	.	.	60	4	65	0	.	92
ACADVL	37	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7124266	7124266	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACADVL	NM_001270447	exon7	c.T435C	p.N145N	.	.	40	9	52	0	.	93
ACAN	176	ucsc.edu;bcgsc.ca	37	15	89386656	89386656	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACAN	NM_001135	exon6	c.G828A	p.L276L	.	.	44	4	51	0	.	25
ACIN1	22985	bcgsc.ca	37	14	23548217	23548217	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACIN1	NM_001164814	exon7	c.A1993G	p.S665G	.	.	50	4	85	0	.	156
ACOT12	134526	bcgsc.ca	37	5	80655801	80655801	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACOT12	NM_130767	exon5	c.G417A	p.L139L	.	.	148	5	142	1	.	92
ACOX3	8310	bcgsc.ca	37	4	8416648	8416648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACOX3	NM_001101667	exon4	c.G386T	p.G129V	.	.	49	4	90	0	.	90
ACP2	53	bcgsc.ca	37	11	47264346	47264346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACP2	NM_001610	exon10	c.C1066A	p.R356S	.	.	65	4	63	1	.	91
ACRC	93953	bcgsc.ca	37	X	70832757	70832757	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACRC	NM_052957	exon13	c.T2001C	p.C667C	.	.	64	4	75	1	.	93
ACSL6	23305	ucsc.edu	37	5	131326651	131326651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACSL6	NM_001009185	exon3	c.G280T	p.G94W	.	.	42	4	22	0	.	229
ACSS1	84532	ucsc.edu	37	20	24994624	24994624	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACSS1	NM_001252677	exon9	c.C1425T	p.G475G	.	.	19	4	11	0	.	92
ACTB	60	bcgsc.ca	37	7	5568883	5568883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACTB	NM_001101	exon3	c.A272T	p.Y91F	.	.	75	5	75	0	.	226
ACTC1	70	bcgsc.ca	37	15	35082697	35082697	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACTC1	NM_005159	exon7	c.T1050C	p.S350S	.	.	68	5	61	0	.	92
ACTR8	93973	bcgsc.ca	37	3	53914020	53914020	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACTR8	NM_022899	exon2	c.A240G	p.K80K	.	.	142	5	192	0	.	91
ACVRL1	94	ucsc.edu;bcgsc.ca	37	12	52309854	52309854	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ACVRL1	NM_000020	exon8	c.C1083T	p.Y361Y	.	.	29	4	25	0	.	521
ADAD1	132612	bcgsc.ca	37	4	123317408	123317408	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAD1	NM_139243	exon7	c.A600G	p.E200E	.	.	73	4	115	0	.	90
ADAM18	8749	ucsc.edu	37	8	39467034	39467034	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAM18	NM_001190956	exon5	c.G298T	p.E100X	.	.	45	4	83	0	.	228
ADAM19	8728	bcgsc.ca	37	5	156920072	156920072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAM19	NM_033274	exon16	c.G1817T	p.R606L	.	.	69	4	58	0	.	294
ADAM32	203102	ucsc.edu;bcgsc.ca	37	8	39022554	39022554	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAM32	NM_145004	exon9	c.C672T	p.F224F	.	.	30	4	104	0	.	227
ADAMTS14	140766	ucsc.edu;bcgsc.ca	37	10	72511295	72511295	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS14	NM_139155	exon17	c.A2498G	p.E833G	.	.	38	4	39	0	.	232
ADAMTS18	170692	bcgsc.ca	37	16	77354986	77354986	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS18	NM_199355	exon15	c.T2277A	p.H759Q	.	.	56	4	97	0	.	1036
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77389917	77389917	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS18	NM_199355	exon9	c.C1380A	p.I460I	.	.	41	4	87	0	.	1036
ADAMTS8	11095	ucsc.edu;bcgsc.ca	37	11	130278752	130278752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTS8	NM_007037	exon7	c.C1834T	p.P612S	.	.	28	4	50	0	.	226
ADAMTSL3	57188	bcgsc.ca	37	15	84683406	84683406	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTSL3	NM_207517	exon24	c.A4086G	p.E1362E	.	.	132	7	141	1	.	1153
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	84651559	84651559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADAMTSL3	NM_207517	exon21	c.T3179C	p.L1060S	.	.	43	20	66	1	.	1153
ADCY8	114	bcgsc.ca	37	8	131896834	131896834	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADCY8	NM_001115	exon8	c.T2085A	p.F695L	.	.	82	4	75	0	.	157
ADD3	120	bcgsc.ca	37	10	111893203	111893203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADD3	NM_016824	exon15	c.A1948G	p.S650G	.	.	77	5	90	0	.	157
ADH1B	125	ucsc.edu	37	4	100239237	100239237	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADH1B	NM_000668	exon3	c.G225A	p.E75E	.	.	37	3	77	0	.	136
ADORA1	134	bcgsc.ca	37	1	203098284	203098284	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADORA1	NM_001048230	exon2	c.C315A	p.R105R	.	.	79	4	52	2	.	153
ADSS	159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	244595870	244595870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADSS	NM_001126	exon4	c.T383A	p.I128N	.	.	783	32	572	0	.	229
ADSSL1	122622	bcgsc.ca	37	14	105207006	105207006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ADSSL1	NM_199165	exon6	c.T674C	p.I225T	.	.	32	4	82	2	.	515
AGAP2	116986	bcgsc.ca	37	12	58128105	58128105	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AGAP2	NM_001122772	exon4	c.C1398A	p.A466A	.	.	55	4	52	0	.	716
AGBL1	123624	bcgsc.ca	37	15	86810294	86810294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_152336	exon12	c.A1687G	p.I563V	.	.	87	6	109	0	.	.
AGMO	392636	bcgsc.ca	37	7	15470648	15470648	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AGMO	NM_001004320	exon4	c.C495A	p.L165L	.	.	138	5	104	0	.	69
AGO2	27161	bcgsc.ca	37	8	141566334	141566334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_012154	exon9	c.C1078A	p.Q360K	.	.	134	8	104	0	.	.
AGPAT3	56894	broad.mit.edu;ucsc.edu	37	21	45397993	45397993	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AGPAT3	NM_001037553	exon7	c.C834G	p.Y278X	.	.	10	5	23	0	.	90
AHCYL2	23382	bcgsc.ca	37	7	129049320	129049320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHCYL2	NM_015328	exon11	c.G1299A	p.M433I	.	.	73	4	107	1	.	70
AHNAK	79026	bcgsc.ca	37	11	62293336	62293336	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHNAK	NM_001620	exon5	c.A8553G	p.G2851G	.	.	95	5	132	0	.	109
AHNAK	79026	bcgsc.ca	37	11	62300427	62300427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHNAK	NM_001620	exon5	c.G1462T	p.V488L	.	.	63	4	89	0	.	109
AHNAK	79026	ucsc.edu;bcgsc.ca	37	11	62288148	62288148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AHNAK	NM_001620	exon5	c.T13741C	p.F4581L	.	.	36	4	82	1	.	109
AKAP13	11214	bcgsc.ca	37	15	86076948	86076948	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKAP13	NM_007200	exon4	c.C315T	p.T105T	.	.	88	5	99	1	.	258
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86273744	86273744	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKAP13	NM_006738	exon30	c.A7100G	p.E2367G	.	.	39	4	35	0	.	258
AKAP14	158798	bcgsc.ca	37	X	119053905	119053905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKAP14	NM_178813	exon6	c.A473G	p.D158G	.	.	67	5	50	0	.	226
AKD1	221264	bcgsc.ca	37	6	109814704	109814704	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKD1	NM_001145128	exon41	c.T5604C	p.S1868S	.	.	69	4	168	1	.	91
AKNAD1	254268	bcgsc.ca	37	1	109391591	109391591	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKNAD1	NM_152763	exon4	c.C1125A	p.S375S	.	.	83	4	63	1	.	93
AKR1C1	1645	bcgsc.ca	37	10	5008147	5008147	+	Silent	SNP	T	T	A	rs1138571		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKR1C1	NM_001353	exon2	c.T126A	p.I42I	.	.	137	5	139	0	T|1.000;|0.000	516
AKT1S1	84335	bcgsc.ca	37	19	50379865	50379865	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKT1S1	NM_032375	exon1	c.G48A	p.T16T	.	.	68	4	99	0	.	186
AKT2	208	ucsc.edu	37	19	40741948	40741948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKT2	NM_001626	exon11	c.G1024T	p.E342X	.	.	45	4	55	0	.	978
AKT3	10000	bcgsc.ca	37	1	243828082	243828082	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AKT3	NM_001206729	exon4	c.A276G	p.P92P	.	.	104	4	71	0	.	1423
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283297	74283298	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1339_1340insT	p.L447fs	.	.	51	42	112	0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALB	NM_000477	exon11	c.1428_1428del	p.476_476del	.	.	23	20	61	0	.	96
ALDH16A1	126133	bcgsc.ca	37	19	49964992	49964992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALDH16A1	NM_001145396	exon6	c.T694C	p.S232P	.	.	63	6	52	0	.	91
ALDH16A1	126133	bcgsc.ca	37	19	49967189	49967189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALDH16A1	NM_153329	exon9	c.C1177T	p.P393S	.	.	59	4	69	0	.	91
ALDH1L1	10840	bcgsc.ca	37	3	125869326	125869326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALDH1L1	NM_001270364	exon8	c.T937C	p.S313P	.	.	132	5	157	1	.	156
ALDH6A1	4329	bcgsc.ca	37	14	74527395	74527395	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALDH6A1	NM_005589	exon12	c.G1558T	p.D520Y	.	.	55	4	103	0	.	90
ALG13	79868	bcgsc.ca	37	X	110952219	110952219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALG13	NM_001099922	exon5	c.G777T	p.L259F	.	.	96	5	84	0	.	130
ALK	238	ucsc.edu;bcgsc.ca	37	2	29445233	29445233	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon22	c.C3492T	p.F1164F	.	.	26	4	43	0	.	3833
ALK	238	ucsc.edu;bcgsc.ca	37	2	29455312	29455312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALK	NM_004304	exon15	c.G2490T	p.M830I	.	.	18	5	33	0	.	3833
ALPI	248	broad.mit.edu;bcgsc.ca	37	2	233322981	233322981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALPI	NM_001631	exon9	c.A1046G	p.E349G	.	.	99	5	100	0	.	90
ALPK2	115701	bcgsc.ca	37	18	56203011	56203011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ALPK2	NM_052947	exon5	c.A4408G	p.S1470G	.	.	99	4	157	0	.	765
AMBRA1	55626	ucsc.edu;bcgsc.ca	37	11	46430118	46430118	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMBRA1	NM_001267782	exon19	c.A3357G	p.T1119T	.	.	55	5	50	0	.	136
AMIGO1	57463	bcgsc.ca	37	1	110050709	110050709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMIGO1	NM_020703	exon2	c.C826G	p.R276G	.	.	56	4	45	1	.	136
AMPD1	270	ucsc.edu;bcgsc.ca	37	1	115217493	115217493	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMPD1	NM_000036	exon13	c.G1779A	p.K593K	.	.	50	6	65	0	.	293
AMT	275	bcgsc.ca	37	3	49455018	49455018	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AMT	NM_000481	exon9	c.C1167T	p.V389V	.	.	48	4	54	0	.	91
ANAPC5	51433	bcgsc.ca	37	12	121757589	121757589	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANAPC5	NM_016237	exon13	c.T1548C	p.F516F	.	.	63	4	74	0	.	290
ANGPT1	284	bcgsc.ca	37	8	108315575	108315575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANGPT1	NM_001146	exon5	c.A829G	p.R277G	.	.	49	4	75	2	.	521
ANGPTL7	10218	bcgsc.ca	37	1	11249856	11249856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANGPTL7	NM_021146	exon1	c.T220C	p.W74R	.	.	56	4	87	0	.	90
ANK2	287	bcgsc.ca	37	4	114223967	114223967	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANK2	NM_001148	exon23	c.T2520C	p.T840T	.	.	49	4	110	1	.	583
ANK3	288	bcgsc.ca	37	10	61830385	61830385	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANK3	NM_020987	exon37	c.T10254C	p.Y3418Y	.	.	71	4	101	0	.	107
ANK3	288	bcgsc.ca	37	10	61835023	61835023	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANK3	NM_020987	exon37	c.T5616C	p.T1872T	.	.	140	5	140	1	.	107
ANKMY1	51281	ucsc.edu;bcgsc.ca	37	2	241492433	241492433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKMY1	NM_017844	exon4	c.G378A	p.L126L	.	.	51	6	51	0	.	90
ANKRD10	55608	ucsc.edu;bcgsc.ca	37	13	111536109	111536109	+	Silent	SNP	C	C	T	rs201341958		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD10	NM_017664	exon5	c.G723A	p.T241T	.	.	20	4	36	0	C|0.999;T|0.001	226
ANKRD18A	253650	bcgsc.ca	37	9	38596248	38596248	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD18A	NM_147195	exon9	c.A1089G	p.T363T	.	.	147	5	271	0	.	92
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	27389068	27389068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD26	NM_014915	exon1	c.A188G	p.Q63R	.	.	50	7	42	0	.	138
ANKRD30B	374860	broad.mit.edu;bcgsc.ca	37	18	14850376	14850376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD30B	NM_001145029	exon35	c.A3202G	p.N1068D	.	.	174	9	251	0	.	24
ANKRD36B	57730	bcgsc.ca	37	2	98206066	98206066	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_025190	exon1	c.T83C	p.V28A	.	.	196	7	164	0	.	.
ANKRD50	57182	bcgsc.ca	37	4	125593591	125593591	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKRD50	NM_020337	exon4	c.C841A	p.R281R	.	.	52	4	81	1	.	90
ANKS1A	23294	bcgsc.ca	37	6	35048880	35048880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKS1A	NM_015245	exon17	c.A2654G	p.H885R	.	.	49	4	44	1	.	94
ANKS6	203286	ucsc.edu;bcgsc.ca	37	9	101552846	101552846	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANKS6	NM_173551	exon2	c.G402A	p.G134G	.	.	44	4	106	0	.	92
ANP32B	10541	ucsc.edu	37	9	100767289	100767289	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANP32B	NM_006401	exon4	c.A371G	p.E124G	.	.	45	4	96	0	.	226
ANP32E	81611	bcgsc.ca	37	1	150204239	150204239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANP32E	NM_030920	exon2	c.G80T	p.C27F	.	.	68	4	32	0	.	90
ANXA4	307	bcgsc.ca	37	2	70047952	70047952	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANXA4	NM_001153	exon12	c.A905T	p.K302M	.	.	45	4	43	0	.	90
ANXA6	309	bcgsc.ca	37	5	150518960	150518960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ANXA6	NM_001155	exon4	c.G158T	p.R53M	.	.	77	5	81	0	.	22
AOC2	314	ucsc.edu;bcgsc.ca	37	17	41001156	41001156	+	Missense_Mutation	SNP	C	C	T	rs138179430	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AOC2	NM_009590	exon2	c.C1642T	p.P548S	.	.	47	4	45	0	C|1.000;A|0.000	92
AP1B1	162	bcgsc.ca	37	22	29735096	29735096	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP1B1	NM_001127	exon16	c.T2046C	p.P682P	.	.	56	4	95	2	.	92
AP1S3	130340	bcgsc.ca	37	2	224642466	224642466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP1S3	NM_001039569	exon2	c.C124T	p.R42C	.	.	86	6	110	0	.	90
AP3M2	10947	ucsc.edu;bcgsc.ca	37	8	42012433	42012433	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP3M2	NM_001134296	exon3	c.T228C	p.P76P	.	.	38	4	110	1	.	90
AP4M1	9179	bcgsc.ca	37	7	99702911	99702911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AP4M1	NM_004722	exon10	c.T776C	p.V259A	.	.	61	4	71	2	.	90
AP5M1	55745	bcgsc.ca	37	14	57746978	57746978	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_018229	exon3	c.A786G	p.P262P	.	.	81	4	150	1	.	.
APAF1	317	bcgsc.ca	37	12	99121021	99121021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APAF1	NM_181861	exon26	c.A3527G	p.H1176R	.	.	78	4	68	0	.	229
APC	324	bcgsc.ca	37	5	112162847	112162847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APC	NM_001127510	exon13	c.A1451G	p.E484G	.	.	124	6	84	0	.	12026
APOBEC3G	60489	ucsc.edu;bcgsc.ca	37	22	39482347	39482347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APOBEC3G	NM_021822	exon6	c.C799A	p.P267T	.	.	39	4	48	0	.	227
APPL2	55198	bcgsc.ca	37	12	105583779	105583779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APPL2	NM_001251904	exon15	c.A1414G	p.R472G	.	.	56	4	57	0	.	91
APTX	54840	bcgsc.ca	37	9	32973637	32973637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APTX	NM_001195248	exon8	c.G930T	p.M310I	.	.	19	3	32	0	.	91
APTX	54840	bcgsc.ca	37	9	32987697	32987697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	APTX	NM_001195248	exon4	c.G370A	p.E124K	.	.	68	4	134	0	.	91
AQR	9716	bcgsc.ca	37	15	35233107	35233107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AQR	NM_014691	exon8	c.A634G	p.R212G	.	.	170	6	164	0	.	135
ARAP1	116985	bcgsc.ca	37	11	72415239	72415239	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARAP1	NM_001040118	exon14	c.C1950A	p.R650R	.	.	51	4	87	0	.	91
ARAP2	116984	bcgsc.ca	37	4	36168623	36168623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARAP2	NM_015230	exon10	c.C1904T	p.A635V	.	.	67	4	78	0	.	93
ARFGEF2	10564	bcgsc.ca	37	20	47645128	47645128	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARFGEF2	NM_006420	exon37	c.T4986C	p.C1662C	.	.	108	5	119	0	.	358
ARG1	383	bcgsc.ca	37	6	131897871	131897871	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARG1	NM_000045	exon2	c.A126G	p.E42E	.	.	49	4	75	0	.	91
ARHGAP11A	9824	bcgsc.ca	37	15	32928718	32928718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP11A	NM_014783	exon12	c.A1744G	p.S582G	.	.	82	4	104	0	.	292
ARHGAP12	94134	bcgsc.ca	37	10	32106803	32106803	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP12	NM_018287	exon13	c.T1644C	p.R548R	.	.	53	4	76	0	.	227
ARHGAP17	55114	bcgsc.ca	37	16	24975629	24975629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP17	NM_001006634	exon7	c.G462T	p.R154S	.	.	91	4	100	0	.	227
ARHGAP21	57584	bcgsc.ca	37	10	24889778	24889778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP21	NM_020824	exon14	c.A2929G	p.R977G	.	.	128	7	138	0	.	235
ARHGAP27	201176	ucsc.edu;bcgsc.ca	37	17	43475409	43475409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP27	NM_199282	exon10	c.G725A	p.R242Q	.	.	41	4	46	0	.	90
ARHGAP28	79822	ucsc.edu;bcgsc.ca	37	18	6851048	6851048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP28	NM_001010000	exon3	c.G82A	p.G28S	.	.	42	4	58	0	.	91
ARHGAP39	80728	bcgsc.ca	37	8	145756179	145756179	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP39	NM_025251	exon12	c.G3057A	p.A1019A	.	.	37	4	38	0	.	90
ARHGAP44	9912	bcgsc.ca	37	17	12862070	12862070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGAP44	NM_014859	exon16	c.C1379T	p.P460L	.	.	59	4	85	0	.	90
ARHGEF11	9826	bcgsc.ca	37	1	156928638	156928638	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF11	NM_198236	exon17	c.G1398T	p.G466G	.	.	116	6	82	0	.	233
ARHGEF12	23365	ucsc.edu;bcgsc.ca	37	11	120329986	120329986	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF12	NM_015313	exon26	c.A2484G	p.L828L	.	.	32	4	52	0	.	661
ARHGEF17	9828	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73022229	73022229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF17	NM_014786	exon1	c.C2546T	p.P849L	.	.	45	15	91	0	.	227
ARHGEF1	9138	bcgsc.ca	37	19	42407551	42407551	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARHGEF1	NM_199002	exon19	c.C1878T	p.D626D	.	.	53	4	47	0	.	293
ARID1A	8289	bcgsc.ca	37	1	27102185	27102185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARID1A	NM_006015	exon19	c.T5111C	p.F1704S	.	.	52	4	71	0	.	584
ARID1A	8289	bcgsc.ca	37	1	27106821	27106821	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARID1A	NM_006015	exon20	c.G6432A	p.L2144L	.	.	55	4	58	0	.	584
ARID4A	5926	bcgsc.ca	37	14	58820512	58820512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARID4A	NM_002892	exon17	c.A1792G	p.S598G	.	.	89	4	135	0	.	231
ARID4B	51742	bcgsc.ca	37	1	235345233	235345233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARID4B	NM_016374	exon20	c.A3001G	p.T1001A	.	.	130	5	106	0	.	228
ARL5C	390790	bcgsc.ca	37	17	37319049	37319049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARL5C	NM_001143968	exon3	c.T170C	p.L57P	.	.	59	4	40	0	.	68
ARL6	84100	bcgsc.ca	37	3	97506944	97506944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARL6	NM_177976	exon7	c.G460A	p.D154N	.	.	77	4	112	1	.	227
ARL6IP6	151188	bcgsc.ca	37	2	153591622	153591622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARL6IP6	NM_152522	exon3	c.T569C	p.L190P	.	.	144	5	149	1	.	90
ARMC2	84071	bcgsc.ca	37	6	109197358	109197358	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARMC2	NM_032131	exon5	c.T476A	p.V159E	.	.	63	4	114	0	.	68
ARMC3	219681	bcgsc.ca	37	10	23297278	23297278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARMC3	NM_173081	exon15	c.A1903G	p.R635G	.	.	94	4	64	0	.	90
ARNT2	9915	ucsc.edu;bcgsc.ca	37	15	80800523	80800523	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARNT2	NM_014862	exon6	c.A649G	p.T217A	.	.	57	5	79	0	.	175
ARPC4	10093	bcgsc.ca	37	3	9845589	9845589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARPC4	NM_001198780	exon5	c.G450T	p.L150F	.	.	97	5	104	0	.	90
ARPP21	10777	bcgsc.ca	37	3	35748550	35748550	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARPP21	NM_001267619	exon9	c.T771A	p.S257S	.	.	68	5	95	0	.	93
ARSK	153642	bcgsc.ca	37	5	94927256	94927256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ARSK	NM_198150	exon6	c.G1023A	p.M341I	.	.	154	6	121	0	.	91
ART4	420	bcgsc.ca	37	12	14993787	14993787	+	Missense_Mutation	SNP	G	G	T	rs77336576	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ART4	NM_021071	exon2	c.C445A	p.Q149K	.	.	76	4	126	0	G|0.996;T|0.004	90
ASAP2	8853	bcgsc.ca	37	2	9525373	9525373	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASAP2	NM_001135191	exon21	c.2017-1G>T	.	.	.	57	4	55	0	.	90
ASB1	51665	bcgsc.ca	37	2	239355047	239355047	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASB1	NM_001040445	exon5	c.T903C	p.C301C	.	.	131	5	85	0	.	226
ASB17	127247	bcgsc.ca	37	1	76387970	76387970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASB17	NM_080868	exon2	c.A476G	p.Q159R	.	.	90	4	101	0	.	227
ASNS	440	bcgsc.ca	37	7	97482457	97482457	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASNS	NM_133436	exon12	c.G1391T	p.W464L	.	.	74	5	98	2	.	91
ASPG	374569	ucsc.edu;bcgsc.ca	37	14	104570684	104570684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080464	exon8	c.A797G	p.E266G	.	.	29	4	53	0	.	.
ASPM	259266	bcgsc.ca	37	1	197072685	197072685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASPM	NM_018136	exon18	c.A5696G	p.Q1899R	.	.	68	4	62	0	.	615
ASTL	431705	bcgsc.ca	37	2	96799190	96799190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASTL	NM_001002036	exon5	c.C429A	p.D143E	.	.	72	4	68	0	.	90
ASXL1	171023	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31021262	31021262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL1	NM_015338	exon11	c.A1261G	p.R421G	.	.	42	5	51	0	.	2057
ASXL2	55252	bcgsc.ca	37	2	25965625	25965625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL2	NM_018263	exon12	c.C3581A	p.T1194K	.	.	150	5	169	0	.	23
ASXL2	55252	bcgsc.ca	37	2	25972908	25972908	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL2	NM_018263	exon11	c.T1517C	p.L506P	.	.	83	4	132	1	.	23
ASXL3	80816	bcgsc.ca	37	18	31319543	31319543	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ASXL3	NM_030632	exon11	c.A2175G	p.T725T	.	.	96	4	113	0	.	49
ATAD2	29028	bcgsc.ca	37	8	124361579	124361579	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATAD2	NM_014109	exon14	c.A1752T	p.L584F	.	.	79	5	57	0	.	92
ATAD2B	54454	bcgsc.ca	37	2	24011449	24011449	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATAD2B	NM_001242338	exon20	c.A2709G	p.R903R	.	.	128	5	135	1	.	68
ATAD5	79915	bcgsc.ca	37	17	29185286	29185286	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATAD5	NM_024857	exon9	c.C2901A	p.L967L	.	.	66	4	62	0	.	93
ATAD5	79915	bcgsc.ca	37	17	29221031	29221031	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATAD5	NM_024857	exon21	c.T5160C	p.C1720C	.	.	88	5	94	0	.	93
ATCAY	85300	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3905457	3905457	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATCAY	NM_033064	exon4	c.C162T	p.N54N	.	.	42	10	61	0	.	67
ATF7IP2	80063	bcgsc.ca	37	16	10575883	10575883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATF7IP2	NM_024997	exon12	c.A1826G	p.E609G	.	.	104	5	110	0	.	186
ATG4A	115201	bcgsc.ca	37	X	107380326	107380326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATG4A	NM_178270	exon7	c.T473C	p.L158P	.	.	66	4	50	0	.	131
ATL3	25923	bcgsc.ca	37	11	63419424	63419424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATL3	NM_015459	exon5	c.A545G	p.D182G	.	.	70	5	94	0	.	69
ATM	472	bcgsc.ca	37	11	108138057	108138057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATM	NM_000051	exon17	c.C2626A	p.Q876K	.	.	56	4	72	0	.	3419
ATM	472	bcgsc.ca	37	11	108202194	108202194	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATM	NM_000051	exon51	c.A7539T	p.T2513T	.	.	81	5	135	0	.	3419
ATM	472	ucsc.edu;bcgsc.ca	37	11	108121612	108121612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATM	NM_000051	exon10	c.A1420G	p.S474G	.	.	44	5	70	0	.	3419
ATP10B	23120	bcgsc.ca	37	5	160039766	160039766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP10B	NM_025153	exon18	c.C2820A	p.T940T	.	.	76	4	64	1	.	72
ATP13A2	23400	bcgsc.ca	37	1	17328563	17328563	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP13A2	NM_022089	exon8	c.C671T	p.P224L	.	.	42	4	68	0	.	93
ATP13A4	84239	bcgsc.ca	37	3	193210941	193210941	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP13A4	NM_032279	exon4	c.C390T	p.C130C	.	.	68	5	84	0	.	92
ATP1B2	482	bcgsc.ca	37	17	7554901	7554901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP1B2	NM_001678	exon1	c.G65T	p.W22L	.	.	16	4	37	0	.	91
ATP4A	495	ucsc.edu;bcgsc.ca	37	19	36050920	36050920	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP4A	NM_000704	exon7	c.C843T	p.I281I	.	.	43	4	70	0	.	91
ATP5C1	509	bcgsc.ca	37	10	7844273	7844273	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP5C1	NM_001001973	exon7	c.G678T	p.L226L	.	.	75	5	98	1	.	90
ATP5G3	518	bcgsc.ca	37	2	176043930	176043930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP5G3	NM_001190329	exon4	c.C169A	p.Q57K	.	.	81	4	89	0	.	91
ATP6V0A1	535	bcgsc.ca	37	17	40646474	40646474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP6V0A1	NM_001130020	exon12	c.C1318A	p.Q440K	.	.	146	6	157	0	.	91
ATP8B3	148229	bcgsc.ca	37	19	1805392	1805392	+	Missense_Mutation	SNP	C	C	A	rs202113850	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_138813	exon10	c.G885T	p.K295N	.	.	63	4	86	0	C|0.999;G|0.000	.
ATP8B4	79895	bcgsc.ca	37	15	50336812	50336812	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATP8B4	NM_024837	exon5	c.C279A	p.V93V	.	.	65	4	76	0	.	140
ATR	545	bcgsc.ca	37	3	142281693	142281693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATR	NM_001184	exon4	c.A551G	p.E184G	.	.	59	5	66	0	.	1139
ATRNL1	26033	bcgsc.ca	37	10	117040906	117040906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATRNL1	NM_207303	exon14	c.G2142T	p.Q714H	.	.	93	5	105	0	.	96
ATRX	546	bcgsc.ca	37	X	76972609	76972609	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATRX	NM_138270	exon2	c.A132G	p.T44T	.	.	52	4	43	0	.	248
ATXN1	6310	bcgsc.ca	37	6	16326757	16326757	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATXN1	NM_001128164	exon7	c.A1785G	p.T595T	.	.	204	6	107	0	.	93
ATXN2L	11273	bcgsc.ca	37	16	28844588	28844588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ATXN2L	NM_148414	exon14	c.A1868G	p.Q623R	.	.	48	4	49	0	.	92
AVIL	10677	bcgsc.ca	37	12	58201430	58201430	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AVIL	NM_006576	exon11	c.G1275T	p.L425L	.	.	67	4	66	0	.	514
AXL	558	bcgsc.ca	37	19	41754723	41754723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AXL	NM_021913	exon14	c.A1709G	p.K570R	.	.	88	5	100	0	.	1403
AZIN1	51582	bcgsc.ca	37	8	103841710	103841710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AZIN1	NM_015878	exon12	c.A1025T	p.Y342F	.	.	84	4	99	0	.	90
AZU1	566	ucsc.edu;bcgsc.ca	37	19	831774	831774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	AZU1	NM_001700	exon5	c.C653T	p.S218F	.	.	32	4	67	0	.	91
B3GNT2	10678	bcgsc.ca	37	2	62449949	62449949	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	B3GNT2	NM_006577	exon2	c.G594T	p.L198L	.	.	54	4	55	0	.	23
B4GALNT1	2583	bcgsc.ca	37	12	58020584	58020584	+	Nonsense_Mutation	SNP	C	C	T	rs144984608		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	B4GALNT1	NM_001478	exon11	c.C1545A	p.C515X	.	.	95	5	112	1	C|1.000;T|0.000	514
B4GALT6	9331	bcgsc.ca	37	18	29237995	29237995	+	Missense_Mutation	SNP	G	G	A	rs150412311	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	B4GALT6	NM_004775	exon3	c.C290T	p.P97L	.	.	99	4	180	1	G|0.999;A|0.001	90
BACH1	571	bcgsc.ca	37	21	30699538	30699538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BACH1	NM_206866	exon3	c.A1393G	p.S465G	.	.	59	4	120	1	.	92
BAG4	9530	bcgsc.ca	37	8	38066774	38066774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BAG4	NM_004874	exon4	c.C877A	p.Q293K	.	.	18	3	39	0	.	228
BBS2	583	bcgsc.ca	37	16	56531685	56531685	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BBS2	NM_031885	exon14	c.T1767C	p.Y589Y	.	.	51	4	68	0	.	91
BBS9	27241	bcgsc.ca	37	7	33390857	33390857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BBS9	NM_198428	exon14	c.T1459C	p.F487L	.	.	150	5	102	0	.	230
BCDIN3D	144233	bcgsc.ca	37	12	50232591	50232591	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BCDIN3D	NM_181708	exon2	c.T442C	p.S148P	.	.	49	4	46	0	.	69
BCHE	590	bcgsc.ca	37	3	165548718	165548718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BCHE	NM_000055	exon2	c.C104A	p.A35E	.	.	97	4	86	0	.	94
BCLAF1	9774	bcgsc.ca	37	6	136593187	136593187	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BCLAF1	NM_014739	exon8	c.G1989T	p.R663S	.	.	125	5	209	0	.	228
BDP1	55814	bcgsc.ca	37	5	70763207	70763207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BDP1	NM_018429	exon6	c.A812G	p.K271R	.	.	91	4	59	1	.	92
BEX5	340542	bcgsc.ca	37	X	101408915	101408915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BEX5	NM_001012978	exon3	c.G323T	p.C108F	.	.	63	4	49	0	.	86
BIK	638	ucsc.edu;bcgsc.ca	37	22	43520125	43520125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BIK	NM_001197	exon2	c.A97G	p.T33A	.	.	37	4	61	0	.	651
BIRC2	329	bcgsc.ca	37	11	102220755	102220755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BIRC2	NM_001256163	exon2	c.C170A	p.P57H	.	.	117	5	271	0	.	660
BIRC6	57448	bcgsc.ca	37	2	32756535	32756535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BIRC6	NM_016252	exon61	c.C12208A	p.P4070T	.	.	65	4	122	0	.	233
BLMH	642	bcgsc.ca	37	17	28613904	28613904	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BLMH	NM_000386	exon5	c.C480T	p.I160I	.	.	111	4	107	0	.	91
BLOC1S2	282991	ucsc.edu;bcgsc.ca	37	10	102045885	102045885	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BLOC1S2	NM_173809	exon2	c.A141G	p.K47K	.	.	36	4	30	0	.	91
BMP10	27302	bcgsc.ca	37	2	69092971	69092971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BMP10	NM_014482	exon2	c.G1067A	p.C356Y	.	.	70	4	87	0	.	92
BMS1P4	729096	bcgsc.ca	37	10	75480416	75480416	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	43	11	44	1	.	.
BMX	660	bcgsc.ca	37	X	15536070	15536070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BMX	NM_001721	exon6	c.C464A	p.A155E	.	.	117	6	114	0	.	541
BNC1	646	bcgsc.ca	37	15	83926434	83926434	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BNC1	NM_001717	exon5	c.T2745C	p.A915A	.	.	62	4	67	0	.	93
BOD1L1	259282	bcgsc.ca	37	4	13602401	13602401	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_148894	exon10	c.A6123G	p.E2041E	.	.	72	4	107	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BPNT1	.	.	.	.	.	.	189	1	118	1	.	91
BPTF	2186	bcgsc.ca	37	17	65888008	65888008	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BPTF	NM_004459	exon7	c.C2291A	p.P764H	.	.	88	4	56	0	.	94
BRAF	673	bcgsc.ca	37	7	140550005	140550005	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRAF	NM_004333	exon2	c.A146G	p.N49S	.	.	55	4	57	0	.	92146
BRCA1	672	bcgsc.ca	37	17	41267771	41267771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRCA1	NM_007298	exon2	c.T106C	p.S36P	.	.	77	4	64	0	.	3415
BRCA2	675	ucsc.edu;bcgsc.ca	37	13	32931936	32931936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRCA2	NM_000059	exon16	c.T7675C	p.S2559P	.	.	37	5	65	1	.	3153
BRD8	10902	bcgsc.ca	37	5	137504176	137504176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRD8	NM_001164326	exon9	c.C844A	p.P282T	.	.	49	4	44	0	.	91
BRF1	2972	ucsc.edu;bcgsc.ca	37	14	105739127	105739127	+	Missense_Mutation	SNP	G	G	T	rs199564741	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRF1	NM_001519	exon3	c.C370A	p.R124S	.	.	23	4	44	0	G|0.999;A|0.000	155
BRSK2	9024	bcgsc.ca	37	11	1463799	1463799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRSK2	NM_001256630	exon5	c.C631A	p.L211M	.	.	67	5	47	0	.	333
BRWD1	54014	ucsc.edu	37	21	40627616	40627616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRWD1	NM_018963	exon19	c.G2210A	p.W737X	.	.	36	4	67	0	.	94
BRWD3	254065	bcgsc.ca	37	X	79975150	79975150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BRWD3	NM_153252	exon18	c.G1882T	p.G628C	.	.	72	5	42	0	.	134
BSN	8927	bcgsc.ca	37	3	49694219	49694219	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BSN	NM_003458	exon5	c.G7230T	p.L2410L	.	.	69	4	88	0	.	97
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694892	49694892	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BSN	NM_003458	exon5	c.C7903T	p.R2635C	.	.	34	7	54	0	.	97
BSPH1	100131137	bcgsc.ca	37	19	48480743	48480743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001128326	exon4	c.C143T	p.P48L	.	.	87	4	97	0	.	.
BTAF1	9044	bcgsc.ca	37	10	93719873	93719873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BTAF1	NM_003972	exon11	c.G1225T	p.G409C	.	.	105	6	109	0	.	92
BTAF1	9044	bcgsc.ca	37	10	93768864	93768864	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BTAF1	NM_003972	exon28	c.G4002T	p.P1334P	.	.	150	6	166	0	.	92
BTBD18	643376	ucsc.edu	37	11	57512484	57512484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145101	exon3	c.C1261A	p.P421T	.	.	46	4	81	0	.	.
BUB1	699	bcgsc.ca	37	2	111398928	111398928	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BUB1	NM_004336	exon22	c.C2739A	p.I913I	.	.	90	4	110	0	.	1060
BUB1	699	bcgsc.ca	37	2	111419359	111419359	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	BUB1	NM_004336	exon10	c.T1017C	p.C339C	.	.	122	6	131	1	.	1060
C10orf11	83938	bcgsc.ca	37	10	77807037	77807037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C10orf11	NM_032024	exon3	c.A290G	p.D97G	.	.	72	4	72	0	.	90
C10orf137	26098	bcgsc.ca	37	10	127412389	127412389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C10orf137	NM_015608	exon4	c.A394G	p.K132E	.	.	105	6	156	0	.	590
C10orf53	282966	bcgsc.ca	37	10	50901836	50901836	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C10orf53	NM_001042427	exon2	c.T114C	p.D38D	.	.	98	5	87	0	.	90
C10orf90	118611	bcgsc.ca	37	10	128150085	128150085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C10orf90	NM_001004298	exon5	c.C1604A	p.P535H	.	.	121	6	132	2	.	92
C11orf30	56946	bcgsc.ca	37	11	76246996	76246996	+	Missense_Mutation	SNP	A	A	G	rs149816608	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C11orf30	NM_020193	exon15	c.A2252G	p.E751G	.	.	71	4	50	0	A|1.000;G|0.000	232
C11orf58	10944	bcgsc.ca	37	11	16774399	16774399	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C11orf58	NM_014267	exon4	c.A276G	p.L92L	.	.	103	4	81	0	.	22
C11orf74	119710	bcgsc.ca	37	11	36669622	36669622	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C11orf74	NM_138787	exon5	c.C415C	p.Q139Q	.	.	72	4	53	0	.	68
C11orf94	143678	bcgsc.ca	37	11	45928156	45928156	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080446	exon3	c.C261A	p.P87P	.	.	55	4	50	0	.	.
C12orf29	91298	bcgsc.ca	37	12	88439522	88439522	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C12orf29	NM_001009894	exon5	c.A585G	p.E195E	.	.	124	5	142	0	.	90
C15orf48	84419	bcgsc.ca	37	15	45725208	45725208	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C15orf48	NM_197955	exon5	c.C246A	p.T82T	.	.	57	4	57	0	.	91
C15orf54	400360	bcgsc.ca	37	15	39544413	39544413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C15orf54	NM_207445	exon2	c.C77A	p.A26D	.	.	66	5	92	1	.	492
C17orf105	284067	bcgsc.ca	37	17	41858556	41858556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001136483	exon2	c.A194G	p.Q65R	.	.	62	4	61	0	.	.
C17orf85	55421	bcgsc.ca	37	17	3729127	3729127	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C17orf85	NM_001114118	exon6	c.A621G	p.E207E	.	.	89	4	154	1	.	91
C1orf112	55732	bcgsc.ca	37	1	169812858	169812858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf112	NM_018186	exon19	c.T1892C	p.L631P	.	.	158	6	79	0	.	90
C1orf112	55732	bcgsc.ca	37	1	169818687	169818687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf112	NM_018186	exon21	c.C2105A	p.A702D	.	.	145	5	129	0	.	90
C1orf168	199920	bcgsc.ca	37	1	57258127	57258127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf168	NM_001004303	exon2	c.C359T	p.S120L	.	.	101	4	152	0	.	95
C1orf173	127254	bcgsc.ca	37	1	75072370	75072370	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf173	NM_001002912	exon10	c.G1404A	p.V468V	.	.	228	6	337	3	.	94
C1orf173	127254	bcgsc.ca	37	1	75097412	75097412	+	Silent	SNP	T	T	C	rs146477214		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf173	NM_001002912	exon7	c.A804G	p.E268E	.	.	176	6	317	4	T|1.000;C|0.000	94
C1orf50	79078	bcgsc.ca	37	1	43240422	43240422	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C1orf50	NM_024097	exon4	c.T297C	p.A99A	.	.	22	3	46	0	.	91
C20orf166-AS1	253868	ucsc.edu	37	20	61144022	61144022	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	41	4	26	0	.	.
C20orf26	26074	bcgsc.ca	37	20	20150054	20150054	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C20orf26	NM_015585	exon13	c.C1335A	p.T445T	.	.	83	5	79	0	.	94
C21orf2	755	bcgsc.ca	37	21	45755685	45755685	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C21orf2	NM_004928	exon3	c.C99A	p.I33I	.	.	49	4	91	0	.	90
C2CD2L	9854	ucsc.edu;bcgsc.ca	37	11	118983537	118983537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C2CD2L	NM_014807	exon10	c.C1340A	p.T447N	.	.	39	5	41	0	.	68
C2orf16	84226	bcgsc.ca	37	2	27799537	27799537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C2orf16	NM_032266	exon1	c.C98T	p.P33L	.	.	81	4	134	0	.	67
C3orf20	84077	bcgsc.ca	37	3	14770135	14770135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C3orf20	NM_032137	exon12	c.C1880A	p.A627D	.	.	60	4	78	0	.	94
C3orf30	152405	ucsc.edu;bcgsc.ca	37	3	118870136	118870136	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C3orf30	NM_152539	exon3	c.A1608G	p.V536V	.	.	40	5	41	0	.	92
C4orf21	55345	ucsc.edu	37	4	113539647	113539647	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C4orf21	NM_018392	exon6	c.T1551C	p.H517H	.	.	36	4	84	1	.	90
C4orf33	132321	bcgsc.ca	37	4	130027802	130027802	+	Missense_Mutation	SNP	C	C	A	rs113988895	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C4orf33	NM_001099783	exon3	c.C242A	p.P81H	.	.	201	7	363	0	C|0.999;T|0.001	69
C5	727	bcgsc.ca	37	9	123739162	123739162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C5	NM_001735	exon29	c.T3680C	p.F1227S	.	.	76	4	126	0	.	92
C5orf34	375444	bcgsc.ca	37	5	43509329	43509329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C5orf34	NM_198566	exon2	c.A113G	p.K38R	.	.	118	5	122	0	.	153
C6orf201	404220	bcgsc.ca	37	6	4130393	4130393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C6orf201	NM_001085401	exon5	c.C400A	p.L134M	.	.	139	6	72	0	.	90
C7orf25	79020	bcgsc.ca	37	7	42950324	42950324	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C7orf25	NM_001099858	exon2	c.T350A	p.I117N	.	.	195	7	151	0	.	69
C8orf22	492307	bcgsc.ca	37	8	49985446	49985446	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001256596	exon2	c.55+2T>C	.	.	.	82	5	96	0	.	.
C8orf34	116328	bcgsc.ca	37	8	69434133	69434133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C8orf34	NM_052958	exon6	c.C865A	p.L289I	.	.	69	4	57	0	.	153
C8orf42	157695	bcgsc.ca	37	8	442734	442734	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_175075	exon4	c.C223A	p.R75R	.	.	64	4	118	1	.	.
C9orf91	203197	ucsc.edu;bcgsc.ca	37	9	117386639	117386639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	C9orf91	NM_153045	exon3	c.A116G	p.N39S	.	.	35	4	81	0	.	91
CABS1	85438	ucsc.edu;bcgsc.ca	37	4	71201464	71201464	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CABS1	NM_033122	exon1	c.A708G	p.E236E	.	.	42	4	88	0	.	93
CACNA1E	777	ucsc.edu	37	1	181767857	181767857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CACNA1E	NM_001205293	exon48	c.C6829A	p.Q2277K	.	.	25	5	15	1	.	95
CACNA2D1	781	bcgsc.ca	37	7	81591813	81591813	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CACNA2D1	NM_000722	exon36	c.2781-2A>T	.	.	.	125	5	110	1	.	96
CACNB4	785	bcgsc.ca	37	2	152717236	152717236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CACNB4	NM_001145798	exon10	c.G857A	p.R286Q	.	.	130	5	117	0	.	24
CAD	790	bcgsc.ca	37	2	27460975	27460975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAD	NM_004341	exon30	c.C4780A	p.Q1594K	.	.	74	5	77	0	.	295
CADPS2	93664	bcgsc.ca	37	7	122028737	122028737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CADPS2	NM_001167940	exon23	c.T3076C	p.F1026L	.	.	66	4	83	1	.	94
CALD1	800	bcgsc.ca	37	7	134618420	134618420	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CALD1	NM_033138	exon5	c.A900G	p.K300K	.	.	161	6	227	0	.	226
CALR	811	bcgsc.ca	37	19	13051428	13051428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CALR	NM_004343	exon6	c.G776T	p.G259V	.	.	25	4	38	0	.	91
CAMK2D	817	ucsc.edu	37	4	114458554	114458554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMK2D	NM_172128	exon7	c.A460G	p.K154E	.	.	37	4	50	0	.	334
CAMKK2	10645	bcgsc.ca	37	12	121693588	121693588	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMKK2	NM_153500	exon8	c.A816G	p.Q272Q	.	.	91	5	124	0	.	450
CAMSAP1	157922	ucsc.edu;bcgsc.ca	37	9	138713378	138713378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMSAP1	NM_015447	exon11	c.G3129T	p.Q1043H	.	.	41	4	63	0	.	92
CAMTA2	23125	bcgsc.ca	37	17	4873319	4873319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAMTA2	NM_001171167	exon18	c.C3136A	p.L1046I	.	.	23	4	33	0	.	91
CAPG	822	ucsc.edu;bcgsc.ca	37	2	85628952	85628952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAPG	NM_001256140	exon3	c.T152C	p.L51P	.	.	61	7	87	0	.	204
CAPN11	11131	bcgsc.ca	37	6	44143825	44143825	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAPN11	NM_007058	exon8	c.G852A	p.L284L	.	.	135	5	62	0	.	136
CAPN14	440854	bcgsc.ca	37	2	31399500	31399500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145122	exon21	c.C1981A	p.Q661K	.	.	93	5	104	0	.	.
CAPN5	726	bcgsc.ca	37	11	76833682	76833682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CAPN5	NM_004055	exon12	c.A1664G	p.K555R	.	.	67	4	35	0	.	90
CARD6	84674	broad.mit.edu;bcgsc.ca	37	5	40852300	40852300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CARD6	NM_032587	exon3	c.T866C	p.V289A	.	.	176	6	127	0	.	230
CARS	833	bcgsc.ca	37	11	3039876	3039876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CARS	NM_001014437	exon13	c.T1499C	p.I500T	.	.	183	6	121	1	.	664
CASC1	55259	bcgsc.ca	37	12	25261620	25261620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CASC1	NM_018272	exon16	c.G2031T	p.E677D	.	.	52	4	108	0	.	92
CASP10	843	bcgsc.ca	37	2	202050522	202050522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CASP10	NM_032976	exon2	c.T22C	p.W8R	.	.	92	4	88	0	.	1086
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	104820474	104820474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CASP4	NM_001225	exon5	c.A577G	p.T193A	.	.	50	10	101	0	.	660
CBFA2T3	863	ucsc.edu;bcgsc.ca	37	16	88949122	88949122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CBFA2T3	NM_005187	exon8	c.G1165A	p.E389K	.	.	31	6	41	0	.	722
CC2D2A	57545	bcgsc.ca	37	4	15504546	15504546	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CC2D2A	NM_001080522	exon7	c.G438T	p.E146D	.	.	48	4	61	0	.	25
CCDC112	153733	bcgsc.ca	37	5	114612691	114612691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC112	NM_001040440	exon4	c.A422G	p.Q141R	.	.	158	6	114	0	.	90
CCDC129	223075	bcgsc.ca	37	7	31617532	31617532	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001257968	exon8	c.G732T	p.L244L	.	.	50	4	56	0	.	.
CCDC13	152206	bcgsc.ca	37	3	42781158	42781158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC13	NM_144719	exon9	c.C1132T	p.R378W	.	.	81	4	91	0	.	91
CCDC141	285025	bcgsc.ca	37	2	179720266	179720266	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC141	NM_173648	exon19	c.T2868C	p.A956A	.	.	128	5	145	0	.	78
CCDC14	64770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	123665744	123665744	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC14	NM_022757	exon7	c.T1128A	p.D376E	.	.	63	9	74	0	.	68
CCDC146	57639	bcgsc.ca	37	7	76911926	76911926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC146	NM_020879	exon15	c.A1972G	p.I658V	.	.	79	4	83	0	.	70
CCDC171	203238	ucsc.edu	37	9	15695263	15695263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_173550	exon11	c.A1246G	p.T416A	.	.	34	4	61	1	.	.
CCDC171	203238	ucsc.edu;bcgsc.ca	37	9	15971645	15971645	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_173550	exon26	c.A3792G	p.S1264S	.	.	31	4	77	0	.	.
CCDC30	728621	bcgsc.ca	37	1	43042786	43042786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC30	NM_001080850	exon7	c.A951G	p.K317K	.	.	64	4	89	0	.	90
CCDC3	83643	bcgsc.ca	37	10	13040398	13040398	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC3	NM_031455	exon2	c.T489C	p.C163C	.	.	76	4	100	0	.	91
CCDC38	120935	bcgsc.ca	37	12	96273526	96273526	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC38	NM_182496	exon12	c.C1038T	p.L346L	.	.	66	4	77	0	.	91
CCDC39	339829	bcgsc.ca	37	3	180381708	180381708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC39	NM_181426	exon2	c.A157G	p.N53D	.	.	71	4	65	0	.	72
CCDC40	55036	bcgsc.ca	37	17	78023724	78023724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC40	NM_017950	exon6	c.A875G	p.Q292R	.	.	75	4	47	0	.	71
CCDC41	51134	bcgsc.ca	37	12	94703764	94703764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC41	NM_016122	exon16	c.T1931C	p.I644T	.	.	100	5	122	1	.	90
CCDC41	51134	bcgsc.ca	37	12	94772723	94772723	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC41	NM_016122	exon7	c.A645G	p.R215R	.	.	100	4	99	0	.	90
CCDC63	160762	bcgsc.ca	37	12	111321990	111321990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC63	NM_152591	exon8	c.T1010C	p.F337S	.	.	66	4	59	0	.	134
CCDC73	493860	bcgsc.ca	37	11	32635751	32635751	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC73	NM_001008391	exon16	c.T2113T	p.F705F	.	.	119	6	91	0	.	91
CCDC86	79080	bcgsc.ca	37	11	60610015	60610015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC86	NM_024098	exon1	c.C418A	p.Q140K	.	.	51	4	53	2	.	90
CCDC88B	283234	ucsc.edu;bcgsc.ca	37	11	64111852	64111852	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC88B	NM_032251	exon14	c.A1839G	p.K613K	.	.	40	4	96	0	.	94
CCDC92	80212	bcgsc.ca	37	12	124422346	124422346	+	Missense_Mutation	SNP	C	C	A	rs201517947		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCDC92	NM_025140	exon5	c.G255T	p.K85N	.	.	58	5	79	0	.	90
CCHCR1	54535	bcgsc.ca	37	6	31122512	31122512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCHCR1	NM_001105564	exon4	c.C562A	p.Q188K	.	.	60	4	37	0	.	91
CCL19	6363	bcgsc.ca	37	9	34690235	34690235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCL19	NM_006274	exon2	c.A154G	p.K52E	.	.	50	4	83	0	.	90
CCL27	10850	bcgsc.ca	37	9	34661971	34661971	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCL27	NM_006664	exon3	c.G309T	p.L103L	.	.	42	4	81	0	.	90
CCNB1	891	bcgsc.ca	37	5	68470129	68470129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCNB1	NM_031966	exon5	c.A598G	p.N200D	.	.	94	4	72	0	.	650
CCNE1	898	bcgsc.ca	37	19	30313167	30313167	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCNE1	NM_001238	exon10	c.G861T	p.L287L	.	.	54	5	63	0	.	1270
CCT4	10575	ucsc.edu;bcgsc.ca	37	2	62099701	62099701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCT4	NM_006430	exon11	c.G1148A	p.G383E	.	.	57	6	98	0	.	92
CCT5	22948	bcgsc.ca	37	5	10254912	10254912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCT5	NM_012073	exon3	c.A293G	p.Q98R	.	.	65	4	88	0	.	92
CCT6A	908	bcgsc.ca	37	7	56119613	56119613	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CCT6A	NM_001762	exon1	c.C72A	p.I24I	.	.	45	6	60	0	.	91
CD101	9398	ucsc.edu;bcgsc.ca	37	1	117560028	117560028	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD101	NM_001256109	exon5	c.G1545A	p.E515E	.	.	42	4	68	0	.	94
CD109	135228	ucsc.edu;bcgsc.ca	37	6	74473386	74473386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD109	NM_133493	exon10	c.C1085T	p.P362L	.	.	48	4	103	0	.	155
CD163L1	283316	ucsc.edu;bcgsc.ca	37	12	7527298	7527298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD163L1	NM_174941	exon13	c.A3149G	p.E1050G	.	.	30	4	43	0	.	100
CD1A	909	bcgsc.ca	37	1	158224934	158224934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD1A	NM_001763	exon2	c.G119T	p.W40L	.	.	110	6	79	0	.	93
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15839760	15839760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD38	NM_001775	exon5	c.T631C	p.S211P	.	.	54	33	59	0	.	92
CD4	920	ucsc.edu;bcgsc.ca	37	12	6923451	6923451	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD4	NM_000616	exon4	c.T358C	p.L120L	.	.	43	4	70	0	.	90
CD53	963	bcgsc.ca	37	1	111440491	111440491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD53	NM_000560	exon7	c.A565G	p.T189A	.	.	79	4	69	0	.	90
CD96	10225	bcgsc.ca	37	3	111304176	111304176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD96	NM_198196	exon6	c.C806T	p.P269L	.	.	80	4	57	1	.	93
CD9	928	bcgsc.ca	37	12	6309692	6309692	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CD9	NM_001769	exon1	c.C27T	p.C9C	.	.	60	4	75	0	.	91
CDC20B	166979	bcgsc.ca	37	5	54468777	54468777	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDC20B	NM_001170402	exon1	c.G52A	p.E18K	.	.	73	4	49	0	.	90
CDC25A	993	bcgsc.ca	37	3	48222222	48222222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDC25A	NM_001789	exon6	c.C538A	p.P180T	.	.	56	4	45	0	.	847
CDC25C	995	bcgsc.ca	37	5	137622894	137622894	+	Silent	SNP	A	A	G	rs140171868	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDC25C	NM_001790	exon11	c.T990C	p.C330C	.	.	90	4	83	0	A|1.000;T|0.000	846
CDC27	996	bcgsc.ca	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T	rs7350889	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDC27	NM_001114091	exon7	c.G794A	p.G265D	.	.	82	11	74	0	C|1.000;|0.000	291
CDC27	996	bcgsc.ca	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A	rs7350908	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDC27	NM_001114091	exon7	c.C724T	p.P242S	.	.	57	8	74	0	G|1.000;|0.000	291
CDH11	1009	bcgsc.ca	37	16	65016136	65016136	+	Silent	SNP	C	C	A	rs139053832	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDH11	NM_001797	exon8	c.G1068T	p.P356P	.	.	97	4	157	0	C|1.000;T|0.000	852
CDH13	1012	ucsc.edu	37	16	83704564	83704564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDH13	NM_001220488	exon10	c.T1412C	p.L471P	.	.	47	4	83	0	.	67
CDH8	1006	bcgsc.ca	37	16	61689458	61689458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDH8	NM_001796	exon11	c.T1822C	p.C608R	.	.	43	5	117	0	.	161
CDK14	5218	bcgsc.ca	37	7	90528649	90528649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDK14	NM_012395	exon6	c.T629C	p.L210P	.	.	74	4	127	0	.	970
CDK9	1025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130550943	130550943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDK9	NM_001261	exon6	c.G725T	p.S242I	.	.	59	44	144	1	.	521
CDKL3	51265	bcgsc.ca	37	5	133640223	133640223	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKL3	NM_001113575	exon11	c.A1494G	p.T498T	.	.	153	5	127	0	.	389
CDKN1A	1026	broad.mit.edu;bcgsc.ca	37	6	36651880	36651880	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.T2G	p.M1R	.	.	50	47	57	1	.	872
CDKN1A	1026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	36651881	36651881	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CDKN1A	NM_001220778	exon2	c.G3T	p.M1I	.	.	50	45	56	0	.	872
CEACAM3	1084	bcgsc.ca	37	19	42314374	42314374	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEACAM3	NM_001815	exon5	c.C609A	p.S203S	.	.	59	4	48	0	.	91
CECR2	27443	bcgsc.ca	37	22	18022348	18022348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CECR2	.	.	.	.	.	.	62	4	75	0	.	70
CELF3	11189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151679702	151679702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CELF3	NM_007185	exon8	c.G841A	p.G281S	.	.	125	17	103	0	.	91
CELSR3	1951	bcgsc.ca	37	3	48696392	48696392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CELSR3	NM_001407	exon1	c.G3676A	p.G1226R	.	.	49	4	54	0	.	523
CENPF	1063	bcgsc.ca	37	1	214822075	214822075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CENPF	NM_016343	exon14	c.C7888A	p.Q2630K	.	.	202	6	154	0	.	567
CENPN	55839	bcgsc.ca	37	16	81060182	81060182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CENPN	NM_001100624	exon9	c.G749T	p.R250L	.	.	178	6	214	2	.	90
CEP192	55125	bcgsc.ca	37	18	13099518	13099518	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP192	NM_032142	exon37	c.A6601G	p.T2201A	.	.	74	5	85	0	.	27
CEP192	55125	bcgsc.ca	37	18	13116410	13116410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP192	NM_032142	exon43	c.C7324T	p.P2442S	.	.	67	5	60	0	.	27
CEP192	55125	ucsc.edu;bcgsc.ca	37	18	13049025	13049025	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP192	NM_032142	exon16	c.C2235T	p.T745T	.	.	58	5	81	0	.	27
CEP250	11190	ucsc.edu	37	20	34085656	34085656	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP250	NM_007186	exon26	c.C3415T	p.R1139X	.	.	32	4	36	0	.	27
CEP44	80817	bcgsc.ca	37	4	175225403	175225403	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEP44	NM_001040157	exon6	c.A390G	p.P130P	.	.	56	4	112	1	.	68
CEP85L	387119	bcgsc.ca	37	6	118804870	118804870	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001178035	exon8	c.A1598G	p.Q533R	.	.	68	4	201	0	.	.
CEPT1	10390	bcgsc.ca	37	1	111726856	111726856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CEPT1	NM_006090	exon9	c.G1175T	p.C392F	.	.	173	7	143	0	.	90
CFH	3075	bcgsc.ca	37	1	196711166	196711166	+	Missense_Mutation	SNP	A	A	G	rs148480839		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CFH	NM_000186	exon19	c.A3118G	p.R1040G	.	.	121	5	107	0	A|0.999;G|0.001	566
CGGBP1	8545	bcgsc.ca	37	3	88190229	88190229	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CGGBP1	.	.	.	.	.	.	58	4	74	0	.	90
CHAF1A	10036	bcgsc.ca	37	19	4429712	4429712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHAF1A	NM_005483	exon10	c.T1781C	p.L594P	.	.	80	4	76	0	.	92
CHD1	1105	bcgsc.ca	37	5	98229266	98229266	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHD1	NM_001270	exon13	c.A1845G	p.E615E	.	.	163	5	104	1	.	274
CHD4	1108	bcgsc.ca	37	12	6702677	6702677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHD4	NM_001273	exon16	c.G2419A	p.V807M	.	.	33	4	60	0	.	228
CHD4	1108	bcgsc.ca	37	12	6710169	6710169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHD4	NM_001273	exon7	c.A850G	p.K284E	.	.	50	4	50	0	.	228
CHEK1	1111	bcgsc.ca	37	11	125514036	125514036	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHEK1	NM_001244846	exon10	c.T974C	p.L325P	.	.	56	4	98	0	.	1509
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	423911	423911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHL1	NM_001253388	exon15	c.G1926T	p.R642S	.	.	78	27	95	0	.	583
CHRM2	1129	bcgsc.ca	37	7	136699583	136699583	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHRM2	.	.	.	.	.	.	66	4	94	0	.	94
CHRM4	1132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46406927	46406927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000741	exon1	c.G1181A	p.R394Q	.	.	89	23	73	0	.	.
CHRNA5	1138	bcgsc.ca	37	15	78882940	78882940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHRNA5	NM_000745	exon5	c.A1207G	p.I403V	.	.	33	4	49	0	.	516
CHRND	1144	ucsc.edu	37	2	233392154	233392154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHRND	NM_000751	exon3	c.A242G	p.H81R	.	.	34	4	34	0	.	155
CHRNE	1145	ucsc.edu	37	17	4804389	4804389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CHRNE	NM_000080	exon7	c.C698T	p.S233L	.	.	29	4	47	0	.	90
CIRBP	1153	bcgsc.ca	37	19	1270937	1270937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CIRBP	NM_001280	exon2	c.C5T	p.A2V	.	.	69	5	114	0	.	226
CLASP2	23122	bcgsc.ca	37	3	33557540	33557540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLASP2	NM_015097	exon36	c.A4112G	p.E1371G	.	.	119	6	129	0	.	93
CLEC12A	160364	bcgsc.ca	37	12	10134630	10134630	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLEC12A	NM_001207010	exon6	c.A573G	p.K191K	.	.	42	4	69	0	.	91
CLEC7A	64581	bcgsc.ca	37	12	10280039	10280039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLEC7A	NM_197954	exon3	c.G205T	p.G69C	.	.	100	7	132	0	.	90
CLIP4	79745	bcgsc.ca	37	2	29404703	29404703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLIP4	NM_024692	exon16	c.A2062G	p.S688G	.	.	82	4	85	2	.	91
CLN8	2055	bcgsc.ca	37	8	1719552	1719552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLN8	NM_018941	exon2	c.C332T	p.T111M	.	.	49	4	128	0	.	92
CLNK	116449	bcgsc.ca	37	4	10492123	10492123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLNK	NM_052964	exon19	c.C1255A	p.L419I	.	.	164	7	239	0	.	23
CLSPN	63967	bcgsc.ca	37	1	36211071	36211071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLSPN	NM_022111	exon16	c.G2947T	p.G983C	.	.	64	4	85	0	.	293
CLSPN	63967	bcgsc.ca	37	1	36229927	36229927	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CLSPN	NM_022111	exon3	c.G522A	p.E174E	.	.	321	8	430	0	.	293
CNDP2	55748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72185845	72185845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNDP2	NM_018235	exon10	c.T1180A	p.Y394N	.	.	36	7	45	1	.	93
CNGA1	1259	bcgsc.ca	37	4	47939244	47939244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNGA1	NM_001142564	exon10	c.T1474C	p.F492L	.	.	91	4	143	2	.	92
CNGA3	1261	bcgsc.ca	37	2	99013671	99013671	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNGA3	NM_001298	exon8	c.G2038A	p.G680R	.	.	56	4	66	0	.	96
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	66050758	66050758	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNIH2	NM_182553	exon5	c.T351G	p.Y117X	.	.	33	19	62	0	.	90
CNKSR3	154043	ucsc.edu;bcgsc.ca	37	6	154727645	154727645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNKSR3	NM_173515	exon13	c.G1511T	p.R504M	.	.	43	4	89	0	.	26
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58568277	58568277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNOT1	NM_016284	exon40	c.A5669G	p.K1890R	.	.	22	4	23	0	.	95
CNTLN	54875	bcgsc.ca	37	9	17226216	17226216	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTLN	NM_017738	exon3	c.T465C	p.S155S	.	.	90	4	152	0	.	91
CNTN5	53942	bcgsc.ca	37	11	99827661	99827661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTN5	NM_001243270	exon7	c.G797T	p.S266I	.	.	52	4	79	0	.	366
CNTN5	53942	bcgsc.ca	37	11	99872838	99872838	+	Missense_Mutation	SNP	C	C	A	rs201581347	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTN5	NM_001243270	exon8	c.C950A	p.T317N	.	.	52	4	74	0	.	366
CNTN6	27255	bcgsc.ca	37	3	1189697	1189697	+	Missense_Mutation	SNP	G	G	T	rs147049142	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTN6	NM_014461	exon2	c.G5T	p.R2M	.	.	103	5	122	0	G|1.000;A|0.000	345
CNTNAP2	26047	ucsc.edu;bcgsc.ca	37	7	146818167	146818167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CNTNAP2	NM_014141	exon6	c.A851G	p.Q284R	.	.	35	4	55	0	.	100
COG3	83548	bcgsc.ca	37	13	46092936	46092936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COG3	NM_031431	exon18	c.G1970T	p.R657I	.	.	97	6	130	0	.	154
COG5	10466	bcgsc.ca	37	7	107013176	107013176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COG5	NM_006348	exon8	c.G792T	p.Q264H	.	.	49	4	63	0	.	93
COL11A1	1301	bcgsc.ca	37	1	103400618	103400618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL11A1	NM_080629	exon45	c.G3526A	p.A1176T	.	.	56	4	96	0	.	586
COL12A1	1303	bcgsc.ca	37	6	75797438	75797438	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL12A1	NM_004370	exon65	c.T9036C	p.G3012G	.	.	79	4	186	2	.	142
COL14A1	7373	bcgsc.ca	37	8	121295883	121295883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL14A1	NM_021110	exon32	c.A3833G	p.H1278R	.	.	73	4	73	0	.	543
COL15A1	1306	ucsc.edu;bcgsc.ca	37	9	101782702	101782702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL15A1	NM_001855	exon12	c.A1679G	p.Q560R	.	.	38	5	77	0	.	96
COL19A1	1310	bcgsc.ca	37	6	70745807	70745807	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL19A1	NM_001858	exon14	c.A1146G	p.G382G	.	.	50	4	96	1	.	156
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111082761	111082761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A2	NM_001846	exon9	c.A563G	p.E188G	.	.	76	27	114	0	.	95
COL4A5	1287	bcgsc.ca	37	X	107850035	107850035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A5	NM_000495	exon29	c.G2308T	p.A770S	.	.	68	4	46	0	.	133
COL4A5	1287	bcgsc.ca	37	X	107929293	107929293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A5	NM_000495	exon46	c.A4231G	p.N1411D	.	.	78	4	76	0	.	133
COL4A6	1288	bcgsc.ca	37	X	107404962	107404962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL4A6	NM_001847	exon42	c.C4223T	p.S1408F	.	.	64	4	43	0	.	199
COL5A2	1290	ucsc.edu;bcgsc.ca	37	2	189927993	189927993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL5A2	NM_000393	exon27	c.G1774T	p.A592S	.	.	23	4	28	0	.	92
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130289820	130289820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	COL6A6	NM_001102608	exon6	c.G2560A	p.A854T	.	.	88	16	93	0	.	76
COPG2	26958	bcgsc.ca	37	7	130147177	130147177	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	63	4	65	0	.	.
CORO1A	11151	ucsc.edu	37	16	30199114	30199114	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CORO1A	NM_001193333	exon8	c.T825C	p.F275F	.	.	45	4	33	0	.	226
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	8141	8141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	ENST00000361739	exon1	c.G556A	p.A186T	.	.	348	42	180	1	.	.
CP	1356	bcgsc.ca	37	3	148927980	148927980	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CP	NM_000096	exon3	c.T581C	p.I194T	.	.	147	6	125	1	.	515
CPA1	1357	bcgsc.ca	37	7	130027800	130027800	+	Missense_Mutation	SNP	C	C	T	rs141400125		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPA1	NM_001868	exon10	c.C1208T	p.T403M	.	.	52	4	68	0	C|1.000;T|0.000	91
CPD	1362	bcgsc.ca	37	17	28749825	28749825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPD	NM_001304	exon5	c.G1441T	p.A481S	.	.	139	5	134	0	.	92
CPEB1	64506	bcgsc.ca	37	15	83226690	83226690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPEB1	NM_030594	exon4	c.C426T	p.P142P	.	.	26	4	32	0	.	136
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	101802222	101802222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPN1	NM_001308	exon9	c.G1339A	p.E447K	.	.	83	35	80	0	.	227
CPQ	10404	bcgsc.ca	37	8	98078368	98078368	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_016134	exon7	c.C1185A	p.L395L	.	.	49	4	46	0	.	.
CPSF3	51692	bcgsc.ca	37	2	9583679	9583679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CPSF3	NM_016207	exon10	c.G1131T	p.M377I	.	.	71	4	111	0	.	153
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207641906	207641906	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CR2	NM_001006658	exon3	c.C480T	p.I160I	.	.	293	160	239	0	.	232
CREBBP	1387	ucsc.edu;bcgsc.ca	37	16	3801728	3801728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CREBBP	NM_004380	exon20	c.A3778G	p.T1260A	.	.	38	4	53	0	.	1807
CREBRF	153222	bcgsc.ca	37	5	172513555	172513555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_153607	exon3	c.A61G	p.T21A	.	.	85	4	62	1	.	.
CRHR2	1395	bcgsc.ca	37	7	30695231	30695231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRHR2	NM_001202475	exon11	c.T1099C	p.F367L	.	.	62	4	33	0	.	524
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274043	43274043	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRIP3	NM_206922	exon6	c.G409A	p.V137M	.	.	53	50	43	0	.	91
CRISPLD2	83716	ucsc.edu;bcgsc.ca	37	16	84922859	84922859	+	Silent	SNP	C	C	T	rs767050	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRISPLD2	NM_031476	exon14	c.C1329T	p.A443A	.	.	37	4	45	0	T|0.483;G|0.078	90
CROCCP2	84809	bcgsc.ca	37	1	16946375	16946375	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	75	4	122	0	.	.
CRTC3	64784	ucsc.edu;bcgsc.ca	37	15	91185335	91185335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRTC3	NM_022769	exon15	c.C1823A	p.P608H	.	.	31	4	61	2	.	393
CRYZL1	9946	bcgsc.ca	37	21	34974631	34974631	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CRYZL1	NM_145858	exon8	c.T486C	p.I162I	.	.	56	4	72	0	.	90
CSDE1	7812	bcgsc.ca	37	1	115279449	115279449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSDE1	NM_001242891	exon7	c.G568A	p.E190K	.	.	138	7	188	0	.	227
CSF3R	1441	bcgsc.ca	37	1	36934821	36934821	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSF3R	NM_156039	exon12	c.G1512A	p.V504V	.	.	52	4	79	0	.	515
CSMD1	64478	bcgsc.ca	37	8	3263694	3263694	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD1	NM_033225	exon15	c.A2121G	p.R707R	.	.	5	3	36	0	.	86
CSMD1	64478	ucsc.edu;bcgsc.ca	37	8	2999990	2999990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD1	NM_033225	exon41	c.C6238A	p.Q2080K	.	.	37	5	100	0	.	86
CSMD2	114784	bcgsc.ca	37	1	34189816	34189816	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD2	NM_052896	exon19	c.C2862A	p.I954I	.	.	73	4	123	0	.	103
CSMD2	114784	bcgsc.ca	37	1	34238227	34238227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD2	NM_052896	exon13	c.A1669G	p.K557E	.	.	65	4	79	0	.	103
CSMD3	114788	bcgsc.ca	37	8	113347582	113347582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSMD3	NM_198123	exon45	c.G7141A	p.G2381S	.	.	93	4	55	0	.	1132
CSPP1	79848	bcgsc.ca	37	8	68105815	68105815	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CSPP1	NM_024790	exon28	c.T3432C	p.F1144F	.	.	48	4	61	0	.	138
CTDSP2	10106	ucsc.edu;bcgsc.ca	37	12	58221372	58221372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTDSP2	NM_005730	exon3	c.C215T	p.S72L	.	.	42	4	51	0	.	514
CTHRC1	115908	bcgsc.ca	37	8	104388154	104388154	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTHRC1	NM_138455	exon2	c.A339G	p.S113S	.	.	69	4	93	0	.	91
CTNNB1	1499	broad.mit.edu;bcgsc.ca	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	rs28931588	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G94A	p.D32N	.	.	155	8	144	0	G|1.000;T|0.000	24361
CTSL1	1514	bcgsc.ca	37	9	90344557	90344557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTSL1	NM_145918	exon6	c.C691A	p.Q231K	.	.	60	4	140	0	.	93
CTTNBP2	83992	ucsc.edu;bcgsc.ca	37	7	117451007	117451007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CTTNBP2	NM_033427	exon3	c.G226A	p.G76R	.	.	45	4	53	0	.	94
CUBN	8029	bcgsc.ca	37	10	16957977	16957977	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CUBN	NM_001081	exon46	c.A7053G	p.G2351G	.	.	80	5	101	0	.	166
CUBN	8029	bcgsc.ca	37	10	17113838	17113838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CUBN	NM_001081	exon18	c.G2434T	p.V812F	.	.	95	4	85	0	.	166
CUL4B	8450	bcgsc.ca	37	X	119664006	119664006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CUL4B	NM_003588	exon21	c.A2597G	p.H866R	.	.	83	4	84	0	.	227
CUL7	9820	bcgsc.ca	37	6	43006096	43006096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CUL7	NM_001168370	exon25	c.A4934G	p.E1645G	.	.	133	5	82	0	.	229
CUZD1	50624	bcgsc.ca	37	10	124593374	124593374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CUZD1	NM_022034	exon8	c.A1465G	p.R489G	.	.	71	5	81	0	.	92
CWF19L1	55280	bcgsc.ca	37	10	102016137	102016137	+	Missense_Mutation	SNP	C	C	A	rs80169594	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CWF19L1	NM_018294	exon5	c.G386T	p.S129I	.	.	100	6	92	0	.	90
CXorf22	170063	bcgsc.ca	37	X	35966480	35966480	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CXorf22	NM_152632	exon4	c.A567G	p.P189P	.	.	58	4	44	0	.	131
CXorf22	170063	bcgsc.ca	37	X	35984798	35984798	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CXorf22	NM_152632	exon9	c.C1527T	p.F509F	.	.	103	4	108	0	.	131
CXorf58	254158	ucsc.edu;bcgsc.ca	37	X	23953505	23953505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CXorf58	NM_152761	exon7	c.A748G	p.I250V	.	.	37	4	32	0	.	130
CYBB	1536	bcgsc.ca	37	X	37641413	37641413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CYBB	NM_000397	exon2	c.T118C	p.F40L	.	.	110	6	109	1	.	130
CYP11B1	1584	ucsc.edu;bcgsc.ca	37	8	143958298	143958298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CYP11B1	NM_000497	exon4	c.G599A	p.S200N	.	.	44	4	45	0	.	94
CYP2D7P1	1564	broad.mit.edu;ucsc.edu	37	22	42538036	42538036	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	76	25	85	0	.	.
CYP4V2	285440	bcgsc.ca	37	4	187122378	187122378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	CYP4V2	NM_207352	exon7	c.C869A	p.A290D	.	.	56	4	64	0	.	90
DAAM2	23500	ucsc.edu	37	6	39869799	39869799	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DAAM2	NM_001201427	exon25	c.C3193A	p.R1065R	.	.	48	4	31	0	.	228
DAGLB	221955	bcgsc.ca	37	7	6485593	6485593	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DAGLB	NM_139179	exon2	c.A238G	p.S80G	.	.	92	4	86	0	.	70
DAPK2	23604	bcgsc.ca	37	15	64275818	64275818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DAPK2	NM_014326	exon3	c.C228A	p.S76R	.	.	45	5	53	0	.	333
DARS2	55157	bcgsc.ca	37	1	173807364	173807364	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DARS2	NM_018122	exon9	c.T807C	p.G269G	.	.	96	5	76	0	.	90
DAW1	164781	bcgsc.ca	37	2	228756025	228756025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_178821	exon4	c.T313C	p.S105P	.	.	142	5	159	0	.	.
DCAF8	50717	bcgsc.ca	37	1	160209928	160209928	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCAF8	NM_015726	exon4	c.A282G	p.R94R	.	.	68	4	68	0	.	92
DCC	1630	bcgsc.ca	37	18	50278694	50278694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCC	NM_005215	exon2	c.T362C	p.L121S	.	.	100	4	101	0	.	225
DCDC2B	149069	ucsc.edu;bcgsc.ca	37	1	32677405	32677405	+	Missense_Mutation	SNP	G	G	A	rs147072705		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001099434	exon3	c.G362A	p.R121Q	.	.	41	4	57	0	G|0.997;A|0.003	.
DCHS2	54798	bcgsc.ca	37	4	155157246	155157246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCHS2	NM_017639	exon25	c.A7193G	p.Q2398R	.	.	76	4	164	0	.	94
DCTD	1635	bcgsc.ca	37	4	183815655	183815655	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTD	NM_001012732	exon4	c.C381A	p.L127L	.	.	39	4	58	1	.	90
DCTN3	11258	ucsc.edu;bcgsc.ca	37	9	34614117	34614117	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN3	NM_024348	exon6	c.C490T	p.L164L	.	.	31	4	34	0	.	90
DCTN6	10671	ucsc.edu;bcgsc.ca	37	8	30038060	30038060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DCTN6	NM_006571	exon6	c.A388G	p.N130D	.	.	46	4	132	1	.	91
DDHD1	80821	bcgsc.ca	37	14	53570464	53570464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDHD1	NM_001160147	exon2	c.A949G	p.R317G	.	.	61	4	118	0	.	92
DDX11	1663	bcgsc.ca	37	12	31242861	31242861	+	Silent	SNP	A	A	C	rs200751040	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX11	NM_030653	exon9	c.A922C	p.R308R	.	.	268	69	455	40	A|0.977;C|0.023	229
DDX39A	10212	bcgsc.ca	37	19	14521818	14521818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX39A	NM_005804	exon5	c.A596G	p.K199R	.	.	18	3	36	0	.	226
DDX3X	1654	bcgsc.ca	37	X	41200777	41200777	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX3X	NM_001193416	exon4	c.A192G	p.K64K	.	.	57	4	88	1	.	715
DDX3Y	8653	bcgsc.ca	37	Y	15026552	15026552	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX3Y	NM_004660	exon8	c.G750A	p.K250K	.	.	17	4	69	0	.	136
DDX4	54514	bcgsc.ca	37	5	55082384	55082384	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX4	NM_024415	exon14	c.C903T	p.N301N	.	.	92	4	80	0	.	227
DDX53	168400	ucsc.edu	37	X	23018309	23018309	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX53	NM_182699	exon1	c.C135A	p.G45G	.	.	41	5	55	0	.	228
DDX58	23586	bcgsc.ca	37	9	32489382	32489382	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX58	NM_014314	exon6	c.T759C	p.P253P	.	.	72	4	170	0	.	230
DDX58	23586	bcgsc.ca	37	9	32493858	32493858	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX58	NM_014314	exon3	c.A324G	p.K108K	.	.	98	5	221	0	.	230
DDX60	55601	bcgsc.ca	37	4	169205992	169205992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX60	NM_017631	exon12	c.A1540G	p.R514G	.	.	129	5	194	0	.	25
DDX60L	91351	bcgsc.ca	37	4	169369911	169369911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DDX60L	NM_001012967	exon9	c.T1016C	p.F339S	.	.	97	4	196	0	.	69
DEFB125	245938	bcgsc.ca	37	20	76857	76857	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DEFB125	NM_153325	exon2	c.T270C	p.G90G	.	.	152	6	158	0	.	92
DENND2C	163259	bcgsc.ca	37	1	115143498	115143498	+	Missense_Mutation	SNP	G	G	T	rs141493549	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	DENND2C,abdomen,malignant_melanoma,0	DENND2C	NM_001256404	exon14	c.C1899A	p.F633L	.	.	67	4	121	0	.	229
DENND4A	10260	bcgsc.ca	37	15	65992936	65992936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DENND4A	NM_001144823	exon20	c.C2776A	p.P926T	.	.	52	4	52	1	.	229
DENND4B	9909	bcgsc.ca	37	1	153916727	153916727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DENND4B	NM_014856	exon2	c.C124T	p.R42W	.	.	51	4	55	1	.	69
DENND4B	9909	mdanderson.org	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	.	.	51	17	32	0	.	69
DENND4C	55667	bcgsc.ca	37	9	19298102	19298102	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DENND4C	NM_017925	exon7	c.A1089G	p.R363R	.	.	43	4	77	0	.	92
DEPDC5	9681	bcgsc.ca	37	22	32188071	32188071	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DEPDC5	NM_001242897	exon11	c.A677T	p.Y226F	.	.	64	4	71	0	.	519
DGCR6	8214	broad.mit.edu	37	22	18898419	18898419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	DGCR6,mouth,carcinoma,0	DGCR6	NM_005675	exon4	c.C391T	p.R131C	.	.	17	3	27	0	.	91
DGKB	1607	bcgsc.ca	37	7	14741306	14741306	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DGKB	NM_145695	exon6	c.G516A	p.S172S	.	.	166	6	156	0	.	276
DGKD	8527	bcgsc.ca	37	2	234363488	234363488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DGKD	NM_152879	exon19	c.A2344G	p.N782D	.	.	48	5	36	0	.	676
DGKE	8526	bcgsc.ca	37	17	54925281	54925281	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DGKE	NM_003647	exon5	c.745-2A>T	.	.	.	122	5	74	0	.	289
DGKH	160851	bcgsc.ca	37	13	42729474	42729474	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DGKH	NM_001204504	exon5	c.G432A	p.K144K	.	.	74	4	149	0	.	652
DGKI	9162	bcgsc.ca	37	7	137170147	137170147	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DGKI	NM_004717	exon24	c.T2400C	p.S800S	.	.	141	6	190	1	.	228
DHX30	22907	bcgsc.ca	37	3	47884645	47884645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX30	NM_138615	exon9	c.T839C	p.L280P	.	.	50	4	52	0	.	228
DHX30	22907	bcgsc.ca	37	3	47889800	47889800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX30	NM_138615	exon15	c.T2417C	p.F806S	.	.	23	3	29	0	.	228
DHX34	9704	ucsc.edu;bcgsc.ca	37	19	47856347	47856347	+	Missense_Mutation	SNP	C	C	A	rs184418357	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX34	NM_014681	exon2	c.C60A	p.S20R	.	.	36	4	45	0	C|0.999;T|0.000	231
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182852382	182852382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DHX9	NM_001357	exon25	c.A3023T	p.E1008V	.	.	156	83	129	0	.	92
DIAPH3	81624	bcgsc.ca	37	13	60240951	60240951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DIAPH3	NM_001042517	exon28	c.T3349C	p.S1117P	.	.	116	5	279	2	.	516
DLGAP4	22839	ucsc.edu	37	20	35154362	35154362	+	Missense_Mutation	SNP	C	C	A	rs6069986	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DLGAP4	NM_014902	exon11	c.C2704A	p.L902I	.	.	44	4	35	0	C|1.000;|0.000	94
DMBT1	1755	bcgsc.ca	37	10	124402701	124402701	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMBT1	NM_007329	exon53	c.G7029A	p.R2343R	.	.	59	4	86	0	.	494
DMRT3	58524	ucsc.edu	37	9	990615	990615	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMRT3	NM_021240	exon2	c.T1029C	p.S343S	.	.	43	4	70	0	.	516
DMTF1	9988	bcgsc.ca	37	7	86823396	86823396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMTF1	NM_001142327	exon16	c.T2006C	p.L669S	.	.	12	3	55	0	.	91
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	118485268	118485268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DMXL1	NM_005509	exon18	c.C3746T	p.P1249L	.	.	56	35	56	0	.	92
DNAAF2	55172	bcgsc.ca	37	14	50094785	50094785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_018139	exon2	c.C1952T	p.P651L	.	.	90	5	155	0	.	.
DNAH10	196385	bcgsc.ca	37	12	124333287	124333287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon33	c.A5606G	p.K1869R	.	.	172	6	149	1	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257438	124257438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C271T	p.P91S	.	.	59	32	53	0	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124257449	124257449	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH10	NM_207437	exon4	c.C282T	p.F94F	.	.	58	33	58	0	.	95
DNAH14	127602	bcgsc.ca	37	1	225393745	225393745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH14	NM_001373	exon39	c.T5984C	p.L1995P	.	.	72	4	57	0	.	23
DNAH17	8632	bcgsc.ca	37	17	76458981	76458981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH17	NM_173628	exon57	c.C9119A	p.A3040D	.	.	178	6	151	1	.	142
DNAH5	1767	bcgsc.ca	37	5	13809220	13809220	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH5	NM_001369	exon46	c.T7685C	p.I2562T	.	.	72	4	86	0	.	182
DNAH5	1767	bcgsc.ca	37	5	13901584	13901584	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH5	NM_001369	exon14	c.A1829C	p.Q610P	.	.	66	4	107	0	.	182
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84896485	84896485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon38	c.A6157T	p.I2053F	.	.	106	5	141	0	.	69
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84852030	84852030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH6	NM_001370	exon29	c.G4358T	p.R1453L	.	.	86	34	129	0	.	69
DNAH7	56171	bcgsc.ca	37	2	196771631	196771631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH7	NM_018897	exon26	c.G4207A	p.G1403S	.	.	163	6	155	0	.	102
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38771008	38771008	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH8	NM_001206927	exon22	c.A2955G	p.E985E	.	.	309	10	146	0	.	615
DNAH9	1770	ucsc.edu;bcgsc.ca	37	17	11806049	11806049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAH9	NM_001372	exon60	c.T11420C	p.M3807T	.	.	36	4	47	0	.	168
DNAJA1	3301	bcgsc.ca	37	9	33026584	33026584	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJA1	NM_001539	exon2	c.T102C	p.H34H	.	.	68	4	109	0	.	226
DNAJC10	54431	bcgsc.ca	37	2	183627524	183627524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJC10	NM_018981	exon22	c.C2261A	p.A754E	.	.	148	7	179	0	.	273
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138764241	138764241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJC18	NM_152686	exon3	c.C359A	p.T120K	.	.	81	26	60	0	.	227
DNAJC19	131118	bcgsc.ca	37	3	180705990	180705990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNAJC19	NM_145261	exon2	c.A31G	p.T11A	.	.	113	5	135	0	.	226
DNM1L	10059	bcgsc.ca	37	12	32893348	32893348	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNM1L	NM_012062	exon18	c.T1890C	p.V630V	.	.	71	4	116	1	.	92
DNMBP	23268	bcgsc.ca	37	10	101715055	101715055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNMBP	NM_015221	exon4	c.T2176C	p.S726P	.	.	100	5	117	0	.	233
DNMT3L	29947	bcgsc.ca	37	21	45680712	45680712	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNMT3L	NM_013369	exon3	c.A117G	p.A39A	.	.	66	5	103	0	.	228
DNTT	1791	bcgsc.ca	37	10	98088572	98088572	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DNTT	NM_001017520	exon8	c.C1098G	p.N366K	.	.	64	4	63	0	.	228
DOCK2	1794	bcgsc.ca	37	5	169143260	169143260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DOCK2	NM_004946	exon20	c.A1985G	p.E662G	.	.	156	5	125	1	.	97
DOCK4	9732	ucsc.edu	37	7	111372339	111372339	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DOCK4	NM_014705	exon51	c.A5397G	p.S1799S	.	.	48	4	62	0	.	26
DONSON	29980	bcgsc.ca	37	21	34956958	34956958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DONSON	NM_017613	exon4	c.G723A	p.M241I	.	.	63	4	125	0	.	91
DOT1L	84444	ucsc.edu	37	19	2225443	2225443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DOT1L	NM_032482	exon26	c.T3653C	p.L1218S	.	.	42	4	35	0	.	132
DPP6	1804	bcgsc.ca	37	7	154684101	154684101	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DPP6	NM_130797	exon26	c.C2509A	p.R837R	.	.	51	4	83	0	.	652
DRD3	1814	bcgsc.ca	37	3	113847610	113847610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DRD3	NM_000796	exon7	c.T1156C	p.F386L	.	.	72	4	86	1	.	93
DSC3	1825	bcgsc.ca	37	18	28588027	28588027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSC3	NM_024423	exon11	c.C1618A	p.P540T	.	.	105	5	165	0	.	94
DSCAM	1826	bcgsc.ca	37	21	41416049	41416049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSCAM	NM_001271534	exon31	c.A5339G	p.D1780G	.	.	64	4	127	1	.	101
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65181701	65181701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSEL	NM_032160	exon2	c.G175T	p.D59Y	.	.	38	5	54	0	.	157
DSG2	1829	bcgsc.ca	37	18	29102044	29102044	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSG2	NM_001943	exon6	c.524-2A>G	.	.	.	76	4	89	0	.	563
DSG4	147409	ucsc.edu;bcgsc.ca	37	18	28991246	28991246	+	Silent	SNP	G	G	A	rs143025218		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSG4	NM_001134453	exon14	c.G2247A	p.S749S	.	.	50	5	54	0	A|0.000;C|0.000;G|1.000	177
DSP	1832	bcgsc.ca	37	6	7578086	7578086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DSP	NM_004415	exon21	c.G2952T	p.M984I	.	.	84	4	49	0	.	518
DTYMK	1841	ucsc.edu	37	2	242615635	242615635	+	Silent	SNP	T	T	C	rs149298120	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DTYMK	NM_012145	exon5	c.A546G	p.K182K	.	.	36	4	23	0	T|1.000;G|0.000	25
DUOX1	53905	bcgsc.ca	37	15	45457078	45457078	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DUOX1	NM_017434	exon35	c.C4635A	p.S1545S	.	.	80	4	75	0	.	142
DUSP13	51207	ucsc.edu	37	10	76857629	76857629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DUSP13	NM_001007273	exon4	c.A293G	p.Q98R	.	.	44	4	31	0	.	226
DYNAP	284254	bcgsc.ca	37	18	52262201	52262201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_173629	exon2	c.A167T	p.H56L	.	.	74	6	92	0	.	.
DYNC1H1	1778	ucsc.edu;bcgsc.ca	37	14	102469021	102469021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYNC1H1	NM_001376	exon22	c.G4690A	p.E1564K	.	.	43	4	111	0	.	98
DYSF	8291	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71778194	71778194	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYSF	NM_001130982	exon19	c.C1642A	p.P548T	.	.	79	24	92	2	.	158
DYX1C1	161582	bcgsc.ca	37	15	55742451	55742451	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	DYX1C1	NM_001033560	exon6	c.T752C	p.L251P	.	.	147	6	125	0	.	91
EAF2	55840	bcgsc.ca	37	3	121573584	121573584	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EAF2	NM_018456	exon3	c.A252G	p.L84L	.	.	205	6	228	0	.	90
EBF3	253738	bcgsc.ca	37	10	131646689	131646689	+	Silent	SNP	T	T	C	rs139895447		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EBF3	NM_001005463	exon11	c.A1068G	p.P356P	.	.	80	4	79	0	T|1.000;C|0.000	91
EBNA1BP2	10969	bcgsc.ca	37	1	43632559	43632559	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EBNA1BP2	NM_001159936	exon8	c.A810G	p.G270G	.	.	55	4	80	1	.	90
ECE1	1889	bcgsc.ca	37	1	21605795	21605795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ECE1	NM_001397	exon3	c.A169G	p.R57G	.	.	58	4	78	0	.	93
ECM2	1842	bcgsc.ca	37	9	95272192	95272192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ECM2	NM_001393	exon6	c.A1295G	p.E432G	.	.	59	4	87	1	.	131
EDC4	23644	ucsc.edu;bcgsc.ca	37	16	67911468	67911468	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EDC4	NM_014329	exon6	c.G698T	p.R233L	.	.	45	4	34	0	.	92
EDEM3	80267	bcgsc.ca	37	1	184681691	184681691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EDEM3	NM_025191	exon14	c.A1412T	p.Y471F	.	.	127	6	148	1	.	91
EEF1A2	1917	bcgsc.ca	37	20	62124502	62124502	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EEF1A2	NM_001958	exon5	c.T760A	p.Y254N	.	.	50	4	83	0	.	90
EFCAB4B	84766	ucsc.edu;bcgsc.ca	37	12	3782653	3782653	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFCAB4B	NM_001144958	exon7	c.A630G	p.E210E	.	.	40	4	55	0	.	92
EFCAB5	374786	bcgsc.ca	37	17	28407782	28407782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFCAB5	NM_198529	exon17	c.T3209C	p.V1070A	.	.	68	4	81	0	.	70
EFHB	151651	bcgsc.ca	37	3	19924185	19924185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFHB	NM_144715	exon12	c.A2185G	p.I729V	.	.	70	4	94	0	.	22
EFHB	151651	bcgsc.ca	37	3	19938259	19938259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFHB	NM_144715	exon9	c.G1645T	p.A549S	.	.	67	4	44	0	.	22
EFR3A	23167	bcgsc.ca	37	8	132958750	132958750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EFR3A	NM_015137	exon4	c.A236G	p.E79G	.	.	98	4	119	0	.	139
EGF	1950	bcgsc.ca	37	4	110901149	110901149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EGF	NM_001963	exon14	c.T2075C	p.V692A	.	.	66	4	129	0	.	524
EGFL6	25975	bcgsc.ca	37	X	13612981	13612981	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EGFL6	NM_001167890	exon3	c.G214T	p.G72C	.	.	72	4	81	0	.	193
EGR4	1961	bcgsc.ca	37	2	73519181	73519181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EGR4	NM_001965	exon2	c.C1174T	p.P392S	.	.	38	4	52	0	.	90
EIF4G3	8672	ucsc.edu;bcgsc.ca	37	1	21133841	21133841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EIF4G3	NM_001198801	exon35	c.G4837A	p.E1613K	.	.	46	4	72	0	.	91
ELAVL1	1994	bcgsc.ca	37	19	8046032	8046032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELAVL1	NM_001419	exon3	c.G211T	p.A71S	.	.	55	4	69	0	.	90
ELF5	2001	ucsc.edu	37	11	34515223	34515223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELF5	NM_198381	exon3	c.A188T	p.Y63F	.	.	47	4	43	0	.	227
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95226823	95226823	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELL2	NM_012081	exon10	c.G1745T	p.G582V	.	.	145	86	119	0	.	90
ELSPBP1	64100	bcgsc.ca	37	19	48517499	48517499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ELSPBP1	NM_022142	exon3	c.A142G	p.S48G	.	.	57	4	65	1	.	90
EMILIN1	11117	bcgsc.ca	37	2	27306628	27306628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EMILIN1	NM_007046	exon4	c.T2189C	p.L730P	.	.	119	7	197	2	.	91
EMR1	2015	bcgsc.ca	37	19	6916318	6916318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EMR1	NM_001256253	exon12	c.G1359T	p.L453F	.	.	62	5	108	0	.	526
ENPP1	5167	bcgsc.ca	37	6	132185686	132185686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ENPP1	NM_006208	exon10	c.T1066C	p.W356R	.	.	75	4	137	1	.	95
ENPP4	22875	bcgsc.ca	37	6	46108019	46108019	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ENPP4	NM_014936	exon2	c.C699A	p.I233I	.	.	155	6	98	0	.	94
ENTPD5	957	bcgsc.ca	37	14	74440650	74440650	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ENTPD5	NM_001249	exon12	c.T816C	p.C272C	.	.	52	4	94	0	.	91
ENTPD5	957	bcgsc.ca	37	14	74453575	74453575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ENTPD5	NM_001249	exon5	c.G239A	p.G80E	.	.	74	4	112	0	.	91
ENTPD7	57089	bcgsc.ca	37	10	101421355	101421355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ENTPD7	NM_020354	exon3	c.C161T	p.A54V	.	.	73	4	69	0	.	91
EPB41	2035	bcgsc.ca	37	1	29391653	29391653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPB41	NM_001166005	exon16	c.A2167G	p.I723V	.	.	79	4	118	0	.	91
EPB41L3	23136	bcgsc.ca	37	18	5395708	5395708	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPB41L3	NM_012307	exon21	c.2974-2A>T	.	.	.	60	4	81	0	.	95
EPHA1	2041	ucsc.edu;bcgsc.ca	37	7	143096773	143096773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPHA1	NM_005232	exon4	c.A806G	p.E269G	.	.	43	4	43	1	.	1436
EPN3	55040	bcgsc.ca	37	17	48614455	48614455	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPN3	NM_017957	exon2	c.C538A	p.R180R	.	.	97	5	50	1	.	91
EPPK1	83481	bcgsc.ca	37	8	144941243	144941243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EPPK1	NM_031308	exon1	c.A6179G	p.Q2060R	.	.	54	4	63	0	.	25
EQTN	54586	bcgsc.ca	37	9	27294371	27294371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001161585	exon3	c.A232G	p.T78A	.	.	84	4	127	1	.	.
ERCC6L	54821	bcgsc.ca	37	X	71426212	71426212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ERCC6L	NM_017669	exon2	c.G2405A	p.G802D	.	.	58	4	68	0	.	93
ERCC6L	54821	bcgsc.ca	37	X	71427642	71427642	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ERCC6L	NM_017669	exon2	c.T975C	p.F325F	.	.	114	5	91	0	.	93
ERI2	112479	bcgsc.ca	37	16	20809967	20809967	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ERI2	NM_001142725	exon9	c.A1155G	p.P385P	.	.	150	7	143	2	.	153
ERICH1	157697	bcgsc.ca	37	8	665914	665914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ERICH1	NM_207332	exon2	c.C116T	p.P39L	.	.	58	4	251	0	.	153
ERLIN1	10613	bcgsc.ca	37	10	101912001	101912001	+	Missense_Mutation	SNP	A	A	G	rs147388040	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_006459	exon11	c.T934C	p.C312R	.	.	134	5	164	1	A|1.000;C|0.000	.
ESRP2	80004	ucsc.edu;bcgsc.ca	37	16	68265213	68265213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ESRP2	NM_024939	exon12	c.C1579A	p.R527S	.	.	49	4	83	0	.	91
ETV4	2118	bcgsc.ca	37	17	41607253	41607253	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ETV4	NM_001986	exon10	c.A954G	p.E318E	.	.	86	4	67	0	.	658
EVC	2121	bcgsc.ca	37	4	5735123	5735123	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EVC	NM_153717	exon5	c.G663T	p.L221L	.	.	67	4	93	1	.	92
EWSR1	2130	bcgsc.ca	37	22	29693885	29693885	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EWSR1	NM_013986	exon14	c.C1378A	p.R460R	.	.	36	5	41	0	.	3375
EXO5	64789	bcgsc.ca	37	1	40980971	40980971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_022774	exon3	c.C755T	p.P252L	.	.	64	4	79	0	.	.
EXOC1	55763	bcgsc.ca	37	4	56765992	56765992	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC1	NM_018261	exon17	c.C2279A	p.T760K	.	.	144	5	197	0	.	950
EXOC2	55770	bcgsc.ca	37	6	617830	617830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC2	NM_018303	exon6	c.A542G	p.E181G	.	.	117	6	55	0	.	662
EXOC2	55770	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	592543	592543	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC2	NM_018303	exon11	c.G1118A	p.C373Y	.	.	95	14	56	0	.	662
EXOC4	60412	bcgsc.ca	37	7	133602443	133602443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC4	NM_021807	exon13	c.A1979T	p.Q660L	.	.	97	6	138	0	.	159
EXOC5	10640	bcgsc.ca	37	14	57676696	57676696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC5	NM_006544	exon16	c.A1697C	p.N566T	.	.	92	4	169	1	.	137
EXOC5	10640	bcgsc.ca	37	14	57686051	57686051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC5	NM_006544	exon14	c.G1515A	p.M505I	.	.	91	6	145	0	.	137
EXOC5	10640	bcgsc.ca	37	14	57698310	57698310	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EXOC5	NM_006544	exon11	c.T1062C	p.T354T	.	.	91	4	157	1	.	137
EYS	346007	bcgsc.ca	37	6	65523334	65523334	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EYS	NM_001142800	exon22	c.A3380G	p.N1127S	.	.	99	4	238	0	.	660
EYS	346007	bcgsc.ca	37	6	66094361	66094361	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EYS	NM_001142801	exon8	c.A1217G	p.E406G	.	.	30	3	66	0	.	660
EYS	346007	ucsc.edu	37	6	64430875	64430875	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EYS	NM_001142800	exon43	c.T9052C	p.L3018L	.	.	42	4	107	0	.	660
EZR	7430	ucsc.edu;bcgsc.ca	37	6	159197498	159197498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	EZR	NM_003379	exon7	c.G737A	p.R246K	.	.	43	4	68	0	.	70
FADS3	3995	bcgsc.ca	37	11	61641317	61641317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FADS3	NM_021727	exon12	c.A1307G	p.D436G	.	.	62	6	96	0	.	46
FAF1	11124	ucsc.edu;bcgsc.ca	37	1	50941323	50941323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAF1	NM_007051	exon18	c.T1682C	p.L561P	.	.	34	4	36	0	.	652
FAM120C	54954	ucsc.edu;bcgsc.ca	37	X	54160309	54160309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM120C	NM_017848	exon8	c.C1787A	p.T596N	.	.	47	4	32	0	.	131
FAM135A	57579	bcgsc.ca	37	6	71236285	71236285	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM135A	NM_001162529	exon13	c.T3498A	p.V1166V	.	.	73	4	155	0	.	90
FAM13A	10144	bcgsc.ca	37	4	89668936	89668936	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM13A	NM_014883	exon18	c.C2228A	p.P743H	.	.	82	4	119	1	.	70
FAM154A	158297	bcgsc.ca	37	9	18928236	18928236	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM154A	NM_153707	exon4	c.T1239C	p.T413T	.	.	22	3	52	0	.	69
FAM160B2	64760	bcgsc.ca	37	8	21955031	21955031	+	Missense_Mutation	SNP	C	C	T	rs199781717	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_022749	exon4	c.C302T	p.P101L	.	.	31	4	75	0	C|0.999;A|0.000	.
FAM169B	283777	bcgsc.ca	37	15	99024007	99024007	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_182562	exon5	c.7-1G>T	.	.	.	66	5	80	0	.	.
FAM175A	84142	bcgsc.ca	37	4	84383906	84383906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM175A	NM_139076	exon9	c.C946A	p.H316N	.	.	93	5	192	0	.	205
FAM177B	400823	bcgsc.ca	37	1	222919938	222919938	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM177B	NM_207468	exon3	c.C51A	p.S17S	.	.	157	5	131	1	.	45
FAM178B	51252	bcgsc.ca	37	2	97613590	97613590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM178B	NM_001122646	exon8	c.G1043T	p.W348L	.	.	118	6	153	0	.	90
FAM179A	165186	ucsc.edu;bcgsc.ca	37	2	29259442	29259442	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179A	NM_199280	exon18	c.C2454A	p.S818S	.	.	56	5	74	0	.	26
FAM179B	23116	ucsc.edu;bcgsc.ca	37	14	45432959	45432959	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM179B	NM_015091	exon1	c.G1335A	p.A445A	.	.	26	4	51	1	.	93
FAM186A	121006	bcgsc.ca	37	12	50745887	50745887	+	Silent	SNP	C	C	A	rs113049433		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM186A	NM_001145475	exon4	c.G4728T	p.G1576G	.	.	74	7	78	0	.	68
FAM186A	121006	bcgsc.ca	37	12	50749884	50749884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM186A	NM_001145475	exon4	c.T731C	p.L244P	.	.	149	5	164	1	.	68
FAM188B	84182	bcgsc.ca	37	7	30880400	30880400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM188B	NM_032222	exon9	c.G1381T	p.A461S	.	.	56	4	41	0	.	90
FAM189A2	9413	ucsc.edu;bcgsc.ca	37	9	71992542	71992542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM189A2	NM_004816	exon6	c.T376C	p.S126P	.	.	36	4	58	1	.	90
FAM204A	63877	bcgsc.ca	37	10	120095770	120095770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM204A	NM_001134672	exon2	c.A158G	p.E53G	.	.	161	6	184	0	.	91
FAM214A	56204	bcgsc.ca	37	15	52897413	52897413	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_019600	exon7	c.C2377A	p.R793R	.	.	64	4	57	0	.	.
FAM214A	56204	bcgsc.ca	37	15	52901264	52901264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_019600	exon6	c.A1847G	p.Q616R	.	.	81	4	92	0	.	.
FAM221B	392307	ucsc.edu;bcgsc.ca	37	9	35826000	35826000	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001012446	exon2	c.C159A	p.T53T	.	.	33	4	59	0	.	.
FAM49B	51571	ucsc.edu;bcgsc.ca	37	8	130874579	130874579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM49B	NM_016623	exon5	c.C197T	p.A66V	.	.	53	4	43	0	.	90
FAM64A	54478	bcgsc.ca	37	17	6350967	6350967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM64A	NM_019013	exon3	c.A479G	p.H160R	.	.	50	4	77	0	.	90
FAM65B	9750	bcgsc.ca	37	6	24850828	24850828	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM65B	NM_015864	exon10	c.C795A	p.I265I	.	.	96	4	56	0	.	91
FAM71E1	112703	ucsc.edu;bcgsc.ca	37	19	50979111	50979111	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM71E1	NM_138411	exon2	c.C339A	p.I113I	.	.	41	4	44	0	.	44
FAM76B	143684	bcgsc.ca	37	11	95516356	95516356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAM76B	NM_144664	exon5	c.A436G	p.R146G	.	.	112	5	198	0	.	90
FAN1	22909	bcgsc.ca	37	15	31210473	31210473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAN1	NM_014967	exon6	c.A1918G	p.R640G	.	.	72	4	82	0	.	90
FANCA	2175	bcgsc.ca	37	16	89874754	89874754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FANCA	NM_000135	exon6	c.G544T	p.V182L	.	.	50	4	123	0	.	1130
FANCI	55215	bcgsc.ca	37	15	89843165	89843165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FANCI	NM_001113378	exon25	c.A2771G	p.Q924R	.	.	82	4	105	0	.	92
FANCM	57697	bcgsc.ca	37	14	45645834	45645834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FANCM	NM_020937	exon14	c.A3877G	p.T1293A	.	.	69	4	137	0	.	569
FARP1	10160	bcgsc.ca	37	13	99098931	99098931	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FARP1	NM_005766	exon26	c.C2916T	p.P972P	.	.	61	4	68	0	.	290
FAT2	2196	bcgsc.ca	37	5	150942983	150942983	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FAT2	NM_001447	exon2	c.G3477T	p.L1159L	.	.	80	4	68	0	.	96
FAXDC2	10826	bcgsc.ca	37	5	154200981	154200981	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_032385	exon8	c.C684T	p.S228S	.	.	108	5	89	0	.	.
FBLIM1	54751	bcgsc.ca	37	1	16095120	16095120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBLIM1	NM_001024215	exon4	c.C536A	p.S179Y	.	.	42	4	58	1	.	91
FBLN2	2199	bcgsc.ca	37	3	13670699	13670699	+	Missense_Mutation	SNP	G	G	T	rs111284875	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBLN2	NM_001004019	exon13	c.G2749T	p.G917C	.	.	38	4	52	0	G|0.998;A|0.002	91
FBN1	2200	bcgsc.ca	37	15	48780315	48780315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN1	NM_000138	exon27	c.G3332A	p.C1111Y	.	.	59	4	59	0	.	92
FBN1	2200	ucsc.edu;bcgsc.ca	37	15	48766571	48766571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN1	NM_000138	exon34	c.T4091A	p.L1364Q	.	.	40	4	40	0	.	92
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127730952	127730952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBN2	NM_001999	exon9	c.T1094C	p.M365T	.	.	38	5	30	0	.	146
FBXL13	222235	bcgsc.ca	37	7	102669813	102669813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXL13	NM_001111038	exon3	c.T53C	p.V18A	.	.	110	5	164	0	.	226
FBXL17	64839	bcgsc.ca	37	5	107559899	107559899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXL17	NM_001163315	exon5	c.G1537A	p.E513K	.	.	51	4	43	0	.	226
FBXO30	84085	bcgsc.ca	37	6	146127417	146127417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXO30	NM_032145	exon2	c.A125G	p.H42R	.	.	51	5	111	0	.	291
FBXO38	81545	bcgsc.ca	37	5	147790314	147790314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXO38	NM_001271723	exon9	c.A1079G	p.E360G	.	.	153	6	122	0	.	231
FBXO47	494188	bcgsc.ca	37	17	37101225	37101225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXO47	NM_001008777	exon7	c.T781C	p.S261P	.	.	71	5	91	0	.	90
FBXO48	554251	bcgsc.ca	37	2	68692121	68692121	+	Silent	SNP	G	G	T	rs150942426	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FBXO48	NM_001024680	exon3	c.C157A	p.R53R	.	.	66	6	99	0	G|0.998;T|0.002	90
FCF1	51077	ucsc.edu;bcgsc.ca	37	14	75200777	75200777	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FCF1	NM_015962	exon7	c.454-2A>G	.	.	.	50	4	71	0	.	91
FER1L5	90342	bcgsc.ca	37	2	97365339	97365339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FER1L5	NM_001113382	exon42	c.C4744A	p.L1582I	.	.	74	5	64	0	.	23
FER1L5	90342	ucsc.edu;bcgsc.ca	37	2	97338889	97338889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FER1L5	NM_001113382	exon18	c.C1552A	p.L518M	.	.	51	7	56	0	.	23
FERMT2	10979	bcgsc.ca	37	14	53385937	53385937	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FERMT2	NM_001135000	exon3	c.C295G	p.L99V	.	.	53	4	106	0	.	68
FGB	2244	bcgsc.ca	37	4	155488847	155488847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FGB	NM_005141	exon4	c.T593C	p.L198P	.	.	80	4	165	0	.	93
FGD3	89846	bcgsc.ca	37	9	95780459	95780459	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FGD3	NM_001083536	exon11	c.C1317A	p.I439I	.	.	61	4	67	0	.	228
FGD3	89846	bcgsc.ca	37	9	95780491	95780491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FGD3	NM_001083536	exon11	c.A1349G	p.Q450R	.	.	52	4	66	0	.	228
FGD5	152273	ucsc.edu	37	3	14952436	14952436	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FGD5	NM_152536	exon11	c.G3405A	p.L1135L	.	.	30	4	20	0	.	231
FGF14	2259	bcgsc.ca	37	13	102379035	102379035	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FGF14	NM_175929	exon4	c.A549G	p.E183E	.	.	227	8	302	1	.	586
FHAD1	114827	bcgsc.ca	37	1	15692361	15692361	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FHAD1	NM_052929	exon23	c.A3020T	p.Q1007L	.	.	69	4	104	0	.	69
FHDC1	85462	bcgsc.ca	37	4	153897177	153897177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FHDC1	NM_033393	exon11	c.A2734G	p.S912G	.	.	44	4	75	0	.	136
FIGNL1	63979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50514900	50514900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FIGNL1	NM_001042762	exon4	c.C86T	p.P29L	.	.	70	20	82	0	.	93
FILIP1L	11259	bcgsc.ca	37	3	99568143	99568143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FILIP1L	NM_182909	exon5	c.C2377A	p.P793T	.	.	132	6	177	0	.	45
FKBP4	2288	bcgsc.ca	37	12	2909241	2909241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FKBP4	NM_002014	exon7	c.C799A	p.L267M	.	.	36	4	50	0	.	226
FKBP8	23770	bcgsc.ca	37	19	18652540	18652540	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FKBP8	NM_012181	exon2	c.G241A	p.E81K	.	.	44	4	60	0	.	227
FKBPL	63943	bcgsc.ca	37	6	32097221	32097221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FKBPL	NM_022110	exon2	c.C337A	p.H113N	.	.	61	5	32	0	.	204
FLG	2312	bcgsc.ca	37	1	152277514	152277514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FLG	NM_002016	exon3	c.C9848A	p.S3283Y	.	.	266	9	194	1	.	106
FLT1	2321	bcgsc.ca	37	13	28886178	28886178	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FLT1	NM_002019	exon26	c.A3444G	p.A1148A	.	.	22	4	30	0	.	1406
FN1	2335	bcgsc.ca	37	2	216237005	216237005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FN1	NM_212482	exon40	c.T6341C	p.V2114A	.	.	84	4	77	0	.	584
FN1	2335	bcgsc.ca	37	2	216238124	216238124	+	Silent	SNP	C	C	A	rs142087146	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FN1	NM_212482	exon39	c.G6168T	p.P2056P	.	.	135	5	138	1	C|1.000;T|0.000	584
FN1	2335	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216238044	216238044	+	Splice_Site	SNP	C	C	G	rs111852829	bycluster	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FN1	NM_212482	exon40	c.6247+1G>C	.	.	.	238	36	253	1	G|1.000	584
FNDC1	84624	bcgsc.ca	37	6	159655453	159655453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FNDC1	NM_032532	exon11	c.G3909T	p.M1303I	.	.	84	4	125	1	.	138
FNDC8	54752	bcgsc.ca	37	17	33454356	33454356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FNDC8	NM_017559	exon2	c.C505A	p.H169N	.	.	55	4	74	0	.	92
FNIP1	96459	bcgsc.ca	37	5	131052337	131052337	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FNIP1	NM_001008738	exon6	c.T543C	p.S181S	.	.	68	4	59	0	.	92
FOXJ2	55810	bcgsc.ca	37	12	8196601	8196601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FOXJ2	NM_018416	exon5	c.G532T	p.A178S	.	.	52	4	57	0	.	230
FREM1	158326	bcgsc.ca	37	9	14746930	14746930	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FREM1	NM_144966	exon35	c.C6129A	p.P2043P	.	.	46	4	77	0	.	138
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39265055	39265055	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FREM2	NM_207361	exon1	c.G3574T	p.E1192X	.	.	55	44	136	0	.	100
FRG1B	284802	bcgsc.ca	37	20	29633902	29633902	+	RNA	SNP	C	C	A	rs145072022		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FRG1B	.	.	.	.	.	.	915	30	938	18	.	22
FRMD6	122786	bcgsc.ca	37	14	52156572	52156572	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FRMD6	NM_001267046	exon2	c.T18C	p.F6F	.	.	89	8	175	3	.	524
FRZB	2487	bcgsc.ca	37	2	183731139	183731139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FRZB	NM_001463	exon1	c.T142C	p.W48R	.	.	54	5	48	0	.	948
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	132585166	132585166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FSTL4	NM_015082	exon7	c.G830A	p.R277K	.	.	91	13	74	0	.	91
FTL	2512	bcgsc.ca	37	19	49469902	49469902	+	Silent	SNP	T	T	C	rs11553251	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FTL	NM_000146	exon4	c.T438C	p.G146G	.	.	86	4	88	0	.	90
FUBP3	8939	bcgsc.ca	37	9	133493249	133493249	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FUBP3	NM_003934	exon8	c.T633C	p.P211P	.	.	48	4	94	0	.	69
FUK	197258	bcgsc.ca	37	16	70513568	70513568	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FUK	NM_145059	exon24	c.T3240C	p.C1080C	.	.	22	3	69	0	.	91
FUS	2521	broad.mit.edu;bcgsc.ca	37	16	31193931	31193931	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FUS	NM_001170634	exon3	c.G136C	p.D46H	.	.	98	6	95	0	.	1719
FZD9	8326	ucsc.edu;bcgsc.ca	37	7	72849142	72849142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	FZD9	NM_003508	exon1	c.T805C	p.F269L	.	.	42	5	48	0	.	1082
GABPB1	2553	bcgsc.ca	37	15	50578328	50578328	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GABPB1	NM_005254	exon8	c.A972G	p.E324E	.	.	57	4	49	0	.	153
GABRA4	2557	bcgsc.ca	37	4	46979537	46979537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GABRA4	NM_000809	exon4	c.G384T	p.W128C	.	.	118	6	154	0	.	156
GABRB1	2560	bcgsc.ca	37	4	47163368	47163368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GABRB1	NM_000812	exon4	c.C343A	p.Q115K	.	.	42	6	62	0	.	92
GABRR1	2569	bcgsc.ca	37	6	89888517	89888517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GABRR1	NM_002042	exon10	c.A1412G	p.N471S	.	.	49	4	87	0	.	91
GALNT4	8693	bcgsc.ca	37	12	89917584	89917584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_003774	exon1	c.A743G	p.E248G	.	.	61	4	74	0	.	.
GALNT8	26290	bcgsc.ca	37	12	4854712	4854712	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GALNT8	NM_017417	exon5	c.G978A	p.G326G	.	.	51	4	96	0	.	230
GANC	2595	bcgsc.ca	37	15	42619625	42619625	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GANC	NM_198141	exon13	c.T1485C	p.A495A	.	.	452	10	485	0	.	92
GAR1	54433	bcgsc.ca	37	4	110745172	110745172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GAR1	NM_018983	exon6	c.G623T	p.R208I	.	.	180	6	315	0	.	90
GATA6	2627	bcgsc.ca	37	18	19762747	19762747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GATA6	NM_005257	exon5	c.G1458T	p.E486D	.	.	152	5	178	0	.	514
GATAD2B	57459	bcgsc.ca	37	1	153791356	153791356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GATAD2B	NM_020699	exon4	c.A508G	p.R170G	.	.	61	4	40	2	.	90
GBAS	2631	bcgsc.ca	37	7	56049164	56049164	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GBAS	NM_001483	exon4	c.279-2A>G	.	.	.	75	4	78	0	.	514
GBF1	8729	bcgsc.ca	37	10	104130547	104130547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GBF1	NM_001199378	exon29	c.T3590C	p.V1197A	.	.	110	5	112	0	.	91
GBP4	115361	bcgsc.ca	37	1	89656957	89656957	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GBP4	NM_052941	exon6	c.T903C	p.I301I	.	.	98	4	158	0	.	90
GCFC2	6936	bcgsc.ca	37	2	75897314	75897314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_003203	exon15	c.G2053T	p.A685S	.	.	78	4	102	1	.	.
GCLM	2730	bcgsc.ca	37	1	94362221	94362221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GCLM	NM_002061	exon5	c.T493C	p.S165P	.	.	137	5	105	2	.	91
GCN1L1	10985	bcgsc.ca	37	12	120578783	120578783	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GCN1L1	NM_006836	exon45	c.G5874A	p.E1958E	.	.	61	4	54	0	.	94
GDAP1	54332	ucsc.edu	37	8	75262721	75262721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GDAP1	NM_018972	exon1	c.A25G	p.R9G	.	.	34	4	34	0	.	90
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34022378	34022378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GDF5	NM_000557	exon2	c.G835A	p.D279N	.	.	51	12	50	0	.	226
GFPT1	2673	bcgsc.ca	37	2	69590760	69590760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GFPT1	NM_001244710	exon4	c.T266C	p.L89P	.	.	58	4	73	0	.	91
GGCT	79017	bcgsc.ca	37	7	30540268	30540268	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGCT	NM_024051	exon2	c.A171G	p.Q57Q	.	.	67	4	70	0	.	90
GGCX	2677	bcgsc.ca	37	2	85780174	85780174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGCX	NM_000821	exon9	c.A1175G	p.N392S	.	.	57	4	82	1	.	91
GGPS1	9453	bcgsc.ca	37	1	235505678	235505678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGPS1	NM_001037277	exon4	c.T494C	p.L165S	.	.	152	5	111	0	.	90
GGT7	2686	ucsc.edu;bcgsc.ca	37	20	33447305	33447305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GGT7	NM_178026	exon7	c.A955G	p.T319A	.	.	37	4	38	1	.	91
GID8	54994	bcgsc.ca	37	20	61576230	61576230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_017896	exon5	c.A653G	p.D218G	.	.	81	7	79	0	.	.
GIGYF2	26058	bcgsc.ca	37	2	233709086	233709086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GIGYF2	NM_001103147	exon27	c.A3170G	p.N1057S	.	.	47	4	48	0	.	28
GIN1	54826	bcgsc.ca	37	5	102440314	102440314	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GIN1	NM_017676	exon4	c.C570A	p.I190I	.	.	131	5	111	0	.	92
GINM1	116254	bcgsc.ca	37	6	149901003	149901003	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_138785	exon5	c.T463C	p.L155L	.	.	64	5	146	0	.	.
GIT1	28964	bcgsc.ca	37	17	27905375	27905375	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GIT1	NM_001085454	exon10	c.T852C	p.L284L	.	.	73	4	69	0	.	251
GJB5	2709	bcgsc.ca	37	1	35223163	35223163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GJB5	NM_005268	exon2	c.G232T	p.A78S	.	.	91	5	138	3	.	91
GK	2710	bcgsc.ca	37	X	30714757	30714757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GK	NM_203391	exon8	c.T686C	p.I229T	.	.	189	6	197	0	.	130
GKAP1	80318	bcgsc.ca	37	9	86421382	86421382	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GKAP1	NM_025211	exon3	c.C51T	p.A17A	.	.	67	4	100	0	.	90
GLDC	2731	ucsc.edu	37	9	6610288	6610288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GLDC	NM_000170	exon4	c.A539G	p.Q180R	.	.	47	4	69	0	.	92
GLI1	2735	bcgsc.ca	37	12	57865264	57865264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GLI1	NM_005269	exon12	c.G2741T	p.G914V	.	.	20	4	27	0	.	722
GNE	10020	bcgsc.ca	37	9	36218282	36218282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GNE	NM_001128227	exon11	c.G1924T	p.V642L	.	.	18	4	37	0	.	115
GNL2	29889	bcgsc.ca	37	1	38040024	38040024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GNL2	NM_013285	exon12	c.A1336G	p.M446V	.	.	54	4	74	0	.	91
GNPAT	8443	bcgsc.ca	37	1	231411218	231411218	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GNPAT	NM_014236	exon14	c.G1911A	p.R637R	.	.	118	5	114	1	.	156
GNPTAB	79158	bcgsc.ca	37	12	102153830	102153830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GNPTAB	NM_024312	exon16	c.A3227G	p.E1076G	.	.	78	4	58	0	.	92
GNPTAB	79158	bcgsc.ca	37	12	102163889	102163889	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GNPTAB	NM_024312	exon10	c.G1194A	p.L398L	.	.	80	4	62	0	.	92
GOLGA1	2800	bcgsc.ca	37	9	127674284	127674284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GOLGA1	NM_002077	exon11	c.A865G	p.K289E	.	.	59	4	107	0	.	91
GOLGA3	2802	bcgsc.ca	37	12	133384634	133384634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GOLGA3	NM_001172557	exon5	c.A1021G	p.T341A	.	.	35	4	38	0	.	95
GOSR1	9527	bcgsc.ca	37	17	28808265	28808265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GOSR1	NM_004871	exon2	c.A136G	p.R46G	.	.	60	5	80	0	.	90
GPAM	57678	bcgsc.ca	37	10	113933469	113933469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPAM	NM_020918	exon7	c.C548A	p.P183Q	.	.	131	5	150	0	.	92
GPATCH2L	55668	bcgsc.ca	37	14	76643031	76643031	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_017926	exon6	c.A1050G	p.K350K	.	.	74	4	136	0	.	.
GPC3	2719	bcgsc.ca	37	X	132887821	132887821	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPC3	NM_001164617	exon3	c.C720A	p.I240I	.	.	64	4	41	0	.	847
GPC3	2719	bcgsc.ca	37	X	132888120	132888120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPC3	NM_001164617	exon3	c.G421T	p.A141S	.	.	68	4	50	0	.	847
GPC4	2239	bcgsc.ca	37	X	132445339	132445339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPC4	NM_001448	exon4	c.G824T	p.R275I	.	.	65	6	39	0	.	226
GPC4	2239	bcgsc.ca	37	X	132458453	132458453	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPC4	NM_001448	exon3	c.T431A	p.V144E	.	.	70	4	67	0	.	226
GPR107	57720	bcgsc.ca	37	9	132837929	132837929	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR107	NM_001136557	exon2	c.T156C	p.H52H	.	.	48	4	90	0	.	91
GPR112	139378	bcgsc.ca	37	X	135441526	135441526	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR112	NM_153834	exon11	c.A7056G	p.K2352K	.	.	187	6	127	0	.	183
GPR115	221393	bcgsc.ca	37	6	47686161	47686161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR115	NM_153838	exon9	c.A2071G	p.M691V	.	.	306	7	169	0	.	160
GPR115	221393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47681793	47681793	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR115	NM_153838	exon6	c.G812A	p.G271E	.	.	93	24	61	0	.	160
GPR116	221395	bcgsc.ca	37	6	46851943	46851943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR116	NM_015234	exon5	c.A394G	p.R132G	.	.	115	5	54	0	.	91
GPR124	25960	ucsc.edu;bcgsc.ca	37	8	37687398	37687398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR124	NM_032777	exon6	c.A584G	p.D195G	.	.	21	4	58	0	.	157
GPR141	353345	bcgsc.ca	37	7	37780424	37780424	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR141	NM_181791	exon1	c.G429T	p.V143V	.	.	112	5	102	0	.	93
GPR152	390212	bcgsc.ca	37	11	67220052	67220052	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR152	NM_206997	exon1	c.G144A	p.G48G	.	.	19	4	56	0	.	90
GPR153	387509	ucsc.edu	37	1	6311434	6311434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR153	NM_207370	exon4	c.A943G	p.M315V	.	.	49	4	76	0	.	514
GPR160	26996	bcgsc.ca	37	3	169802648	169802648	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR160	NM_014373	exon4	c.T888C	p.C296C	.	.	50	4	58	0	.	90
GPR22	2845	bcgsc.ca	37	7	107115126	107115126	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR22	NM_005295	exon3	c.G621A	p.L207L	.	.	59	4	78	0	.	92
GPR39	2863	bcgsc.ca	37	2	133174924	133174924	+	Missense_Mutation	SNP	C	C	A	rs187773897	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR39	NM_001508	exon1	c.C309A	p.S103R	.	.	64	4	49	1	C|0.999;T|0.001	226
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97246970	97246970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR63	NM_030784	exon2	c.T638C	p.L213S	.	.	25	15	58	0	.	92
GPR75-ASB3	100302652	bcgsc.ca	37	2	53992549	53992549	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001164165	exon2	c.A275G	p.N92S	.	.	55	6	80	0	.	.
GPR97	222487	bcgsc.ca	37	16	57719570	57719570	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR97	NM_170776	exon11	c.A1272G	p.E424E	.	.	62	4	101	1	.	91
GPR98	84059	bcgsc.ca	37	5	89979518	89979518	+	Missense_Mutation	SNP	C	C	T	rs17544552	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPR98	NM_032119	exon28	c.C5780T	p.T1927M	.	.	86	5	86	0	C|0.929;T|0.071	103
GPRC5C	55890	bcgsc.ca	37	17	72436231	72436231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GPRC5C	NM_022036	exon2	c.G451T	p.A151S	.	.	96	5	74	1	.	525
GRAMD1B	57476	bcgsc.ca	37	11	123474186	123474186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRAMD1B	NM_020716	exon8	c.A674G	p.E225G	.	.	49	4	72	0	.	69
GREB1	9687	bcgsc.ca	37	2	11729005	11729005	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GREB1	NM_014668	exon10	c.C1293T	p.P431P	.	.	47	4	65	0	.	91
GRHL3	57822	bcgsc.ca	37	1	24662973	24662973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRHL3	NM_021180	exon4	c.T283C	p.Y95H	.	.	57	4	65	0	.	91
GRID2IP	392862	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	6554130	6554130	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145118	exon8	c.C1299A	p.Y433X	.	.	15	8	14	0	.	.
GRK4	2868	bcgsc.ca	37	4	3029679	3029679	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRK4	NM_182982	exon11	c.C1011T	p.I337I	.	.	69	4	95	0	.	507
GRK5	2869	bcgsc.ca	37	10	121212749	121212749	+	Silent	SNP	G	G	T	rs185837625	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRK5	NM_005308	exon15	c.G1635T	p.P545P	.	.	14	3	30	0	G|0.999;A|0.000	547
GRM2	2912	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	51749875	51749875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRM2	NM_000839	exon4	c.G2086A	p.A696T	.	.	20	4	42	0	.	522
GRSF1	2926	ucsc.edu;bcgsc.ca	37	4	71698873	71698873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_002092	exon3	c.A632G	p.E211G	.	.	35	4	77	0	.	.
GRWD1	83743	ucsc.edu	37	19	48949663	48949663	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRWD1	NM_031485	exon2	c.A209G	p.D70G	.	.	31	4	33	1	.	91
GRXCR1	389207	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	42895631	42895631	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GRXCR1	NM_001080476	exon1	c.C348T	p.G116G	.	.	20	7	50	1	.	23
GSDMA	284110	ucsc.edu	37	17	38121979	38121979	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSDMA	NM_178171	exon2	c.A39G	p.R13R	.	.	39	4	40	0	.	90
GSDMB	55876	bcgsc.ca	37	17	38066162	38066162	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSDMB	NM_001042471	exon4	c.A423G	p.E141E	.	.	51	4	55	0	.	153
GSK3B	2932	bcgsc.ca	37	3	119562175	119562175	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSK3B	NM_002093	exon11	c.T1161C	p.A387A	.	.	76	4	92	0	.	978
GSPT1	2935	bcgsc.ca	37	16	11969951	11969951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSPT1	NM_002094	exon13	c.G1684A	p.E562K	.	.	87	4	73	0	.	206
GSPT2	23708	bcgsc.ca	37	X	51488391	51488391	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSPT2	NM_018094	exon1	c.T1669C	p.L557L	.	.	56	4	67	0	.	228
GSTCD	79807	bcgsc.ca	37	4	106640680	106640680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSTCD	NM_001031720	exon3	c.T890C	p.F297S	.	.	42	4	64	0	.	92
GSTM2	2946	bcgsc.ca	37	1	110210742	110210742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSTM2	NM_001142368	exon1	c.C5T	p.P2L	.	.	212	7	160	0	.	514
GSTM3	2947	bcgsc.ca	37	1	110282073	110282073	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GSTM3	NM_000849	exon4	c.A167G	p.K56R	.	.	80	4	88	0	.	90
GTF2F1	2962	bcgsc.ca	37	19	6383374	6383374	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GTF2F1	NM_002096	exon6	c.G630T	p.L210L	.	.	43	5	61	0	.	115
GTF3C1	2975	bcgsc.ca	37	16	27476659	27476659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GTF3C1	NM_001520	exon33	c.G5277T	p.K1759N	.	.	67	4	67	0	.	94
GTF3C1	2975	ucsc.edu;bcgsc.ca	37	16	27474886	27474886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GTF3C1	NM_001520	exon35	c.A5900G	p.N1967S	.	.	36	4	36	0	.	94
GUCA1C	9626	bcgsc.ca	37	3	108672528	108672528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GUCA1C	NM_005459	exon1	c.A82G	p.M28V	.	.	181	6	171	1	.	90
GUCY1A3	2982	bcgsc.ca	37	4	156631713	156631713	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GUCY1A3	NM_001130687	exon6	c.C396A	p.I132I	.	.	75	4	121	0	.	93
GUCY1B3	2983	ucsc.edu;bcgsc.ca	37	4	156715007	156715007	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_000857	exon6	c.496-1G>T	.	.	.	44	4	97	1	.	.
GULP1	51454	bcgsc.ca	37	2	189393852	189393852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GULP1	NM_016315	exon6	c.G191T	p.G64V	.	.	322	8	280	0	.	91
GZF1	64412	bcgsc.ca	37	20	23345591	23345591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	GZF1	NM_022482	exon1	c.G571A	p.G191S	.	.	58	4	48	0	.	91
HACE1	57531	bcgsc.ca	37	6	105232358	105232358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HACE1	NM_020771	exon13	c.T1412C	p.M471T	.	.	69	4	119	0	.	663
HAT1	8520	bcgsc.ca	37	2	172844198	172844198	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HAT1	NM_003642	exon10	c.G1014A	p.L338L	.	.	165	5	155	0	.	290
HDAC2	3066	bcgsc.ca	37	6	114277213	114277213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HDAC2	NM_001527	exon5	c.T461C	p.V154A	.	.	56	4	61	0	.	660
HEATR1	55127	bcgsc.ca	37	1	236723115	236723115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HEATR1	NM_018072	exon34	c.T4669C	p.Y1557H	.	.	55	4	64	0	.	93
HEATR5B	54497	bcgsc.ca	37	2	37227800	37227800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HEATR5B	NM_019024	exon33	c.C5474A	p.A1825D	.	.	90	4	120	0	.	142
HECTD2	143279	bcgsc.ca	37	10	93220236	93220236	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HECTD2	NM_182765	exon3	c.T321A	p.S107S	.	.	55	4	59	0	.	658
HECW1	23072	ucsc.edu;bcgsc.ca	37	7	43506065	43506065	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HECW1	NM_015052	exon15	c.A2811G	p.S937S	.	.	56	4	53	1	.	669
HEG1	57493	bcgsc.ca	37	3	124738344	124738344	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HEG1	NM_020733	exon5	c.A1350G	p.R450R	.	.	82	4	105	0	.	70
HELLS	3070	bcgsc.ca	37	10	96306207	96306207	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HELLS	NM_018063	exon2	c.A105G	p.E35E	.	.	71	4	61	0	.	92
HELZ	9931	bcgsc.ca	37	17	65147314	65147314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HELZ	NM_014877	exon18	c.A2204G	p.K735R	.	.	207	6	113	0	.	92
HEPH	9843	bcgsc.ca	37	X	65486396	65486396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HEPH	NM_138737	exon21	c.T3521C	p.L1174P	.	.	225	8	249	0	.	135
HERC1	8925	bcgsc.ca	37	15	64045276	64045276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HERC1	NM_003922	exon8	c.G1783T	p.G595C	.	.	55	4	57	0	.	666
HERC5	51191	bcgsc.ca	37	4	89414191	89414191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HERC5	NM_016323	exon17	c.A2162G	p.D721G	.	.	72	4	136	1	.	664
HGS	9146	bcgsc.ca	37	17	79652703	79652703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HGS	NM_004712	exon2	c.C106A	p.R36S	.	.	82	4	42	0	.	91
HID1	283987	bcgsc.ca	37	17	72954443	72954443	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_030630	exon11	c.C1371A	p.T457T	.	.	86	5	54	1	.	.
HIPK2	28996	bcgsc.ca	37	7	139305294	139305294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HIPK2	NM_022740	exon7	c.C1635T	p.F545F	.	.	102	5	120	0	.	785
HKDC1	80201	bcgsc.ca	37	10	71020967	71020967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HKDC1	NM_025130	exon16	c.G2289T	p.Q763H	.	.	39	5	31	0	.	95
HLA-DRB1	3123	bcgsc.ca	37	6	32548031	32548031	+	Silent	SNP	C	C	T	rs192487435	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HLA-DRB1	NM_002124	exon5	c.G780A	p.Q260Q	.	.	75	27	396	8	C|0.978;T|0.022	1
HMGA1	3159	bcgsc.ca	37	6	34208584	34208584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HMGA1	NM_145903	exon2	c.C27A	p.S9R	.	.	67	4	47	0	.	650
HMGCLL1	54511	bcgsc.ca	37	6	55364092	55364092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HMGCLL1	NM_019036	exon7	c.T638C	p.V213A	.	.	318	8	176	0	.	94
HMGCR	3156	bcgsc.ca	37	5	74643039	74643039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HMGCR	NM_001130996	exon6	c.G461T	p.R154M	.	.	299	7	251	1	.	227
HOGA1	112817	bcgsc.ca	37	10	99359853	99359853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HOGA1	NM_138413	exon5	c.G633T	p.K211N	.	.	121	7	116	0	.	90
HOOK3	84376	bcgsc.ca	37	8	42829339	42829339	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HOOK3	NM_032410	exon13	c.1321+2T>A	.	.	.	50	5	112	0	.	154
HPS5	11234	bcgsc.ca	37	11	18317568	18317568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HPS5	NM_181507	exon13	c.T1612C	p.S538P	.	.	77	4	55	0	.	133
HRASLS	57110	bcgsc.ca	37	3	192980946	192980946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HRASLS	NM_020386	exon3	c.G642T	p.E214D	.	.	114	5	135	1	.	514
HRC	3270	bcgsc.ca	37	19	49656535	49656535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HRC	NM_002152	exon2	c.T1885C	p.Y629H	.	.	66	5	65	0	.	91
HSD17B11	51170	bcgsc.ca	37	4	88278465	88278465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSD17B11	NM_016245	exon5	c.G661T	p.V221L	.	.	80	4	180	0	.	92
HSD3B1	3283	bcgsc.ca	37	1	120056509	120056509	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSD3B1	NM_000862	exon4	c.C363T	p.I121I	.	.	85	4	88	0	.	92
HSPA12B	116835	bcgsc.ca	37	20	3730638	3730638	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSPA12B	NM_052970	exon11	c.C1065T	p.G355G	.	.	43	4	42	0	.	226
HSPA14	51182	bcgsc.ca	37	10	14909229	14909229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSPA14	NM_016299	exon11	c.A1141G	p.K381E	.	.	83	4	62	0	.	291
HSPA9	3313	bcgsc.ca	37	5	137895743	137895743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSPA9	NM_004134	exon11	c.C1220T	p.P407L	.	.	78	5	59	0	.	226
HSPBP1	23640	bcgsc.ca	37	19	55790813	55790813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HSPBP1	NM_012267	exon2	c.C164A	p.A55E	.	.	68	4	43	0	.	90
HTR1B	3351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	78172410	78172410	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HTR1B	NM_000863	exon1	c.C711T	p.S237S	.	.	23	19	37	0	.	90
HTT	3064	bcgsc.ca	37	4	3129063	3129063	+	Missense_Mutation	SNP	A	A	G	rs199954376		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HTT	NM_002111	exon12	c.A1475G	p.H492R	.	.	60	4	81	0	A|0.999;G|0.000	281
HTT	3064	bcgsc.ca	37	4	3237112	3237112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HTT	NM_002111	exon62	c.C8558A	p.A2853E	.	.	51	6	70	1	.	281
HUNK	30811	ucsc.edu;bcgsc.ca	37	21	33340670	33340670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HUNK	NM_014586	exon6	c.T983C	p.V328A	.	.	23	4	56	0	.	334
HUWE1	10075	bcgsc.ca	37	X	53627119	53627119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HUWE1	NM_031407	exon29	c.C3122A	p.A1041E	.	.	88	5	93	0	.	280
HYOU1	10525	bcgsc.ca	37	11	118919521	118919521	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	HYOU1	NM_006389	exon18	c.C2070T	p.A690A	.	.	51	4	129	0	.	90
IARS	3376	bcgsc.ca	37	9	95036782	95036782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IARS	NM_013417	exon10	c.A916G	p.T306A	.	.	9	3	31	0	.	92
IBTK	25998	bcgsc.ca	37	6	82883102	82883102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IBTK	NM_015525	exon27	c.C3779T	p.P1260L	.	.	48	4	71	0	.	92
ICA1L	130026	bcgsc.ca	37	2	203682243	203682243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ICA1L	NM_138468	exon7	c.C582A	p.S194R	.	.	76	5	75	0	.	90
IFNA7	3444	bcgsc.ca	37	9	21202158	21202158	+	Missense_Mutation	SNP	G	G	A	rs138679112	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IFNA7	NM_021057	exon1	c.C7T	p.R3W	.	.	75	4	128	0	G|0.998;A|0.002	90
IFT122	55764	bcgsc.ca	37	3	129202350	129202350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IFT122	NM_052985	exon16	c.C1829A	p.A610D	.	.	113	6	98	0	.	92
IFT80	57560	bcgsc.ca	37	3	160073816	160073816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IFT80	NM_020800	exon8	c.G762T	p.L254F	.	.	43	4	59	0	.	522
IGF2R	3482	bcgsc.ca	37	6	160481652	160481652	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGF2R	NM_000876	exon23	c.T3165C	p.H1055H	.	.	81	4	169	0	.	118
IGSF10	285313	ucsc.edu;bcgsc.ca	37	3	151155692	151155692	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF10	NM_178822	exon6	c.T6657C	p.S2219S	.	.	39	4	49	0	.	102
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118621409	118621409	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IGSF11	NM_001015887	exon7	c.T1254C	p.P418P	.	.	94	8	105	0	.	90
IKBKAP	8518	bcgsc.ca	37	9	111679948	111679948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IKBKAP	NM_003640	exon9	c.C743T	p.P248L	.	.	51	4	126	0	.	318
IKZF4	64375	ucsc.edu;bcgsc.ca	37	12	56428968	56428968	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IKZF4	NM_022465	exon8	c.C1611T	p.I537I	.	.	41	4	37	0	.	205
IL12B	3593	ucsc.edu;bcgsc.ca	37	5	158750288	158750288	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL12B	NM_002187	exon3	c.G138A	p.V46V	.	.	44	5	53	1	.	90
IL12RB2	3595	bcgsc.ca	37	1	67861720	67861720	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL12RB2	NM_001559	exon16	c.A2537G	p.D846G	.	.	62	4	116	0	.	92
IL13RA2	3598	bcgsc.ca	37	X	114248434	114248434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL13RA2	NM_000640	exon5	c.T419C	p.V140A	.	.	212	6	179	0	.	132
IL18R1	8809	bcgsc.ca	37	2	102984477	102984477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL18R1	NM_003855	exon2	c.A251G	p.E84G	.	.	195	7	226	1	.	93
IL18RAP	8807	bcgsc.ca	37	2	103053717	103053717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL18RAP	NM_003853	exon6	c.G625A	p.D209N	.	.	72	4	96	0	.	95
IL1B	3553	bcgsc.ca	37	2	113588985	113588985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL1B	NM_000576	exon6	c.T481C	p.S161P	.	.	47	5	42	0	.	522
IL1R1	3554	bcgsc.ca	37	2	102788282	102788282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL1R1	NM_000877	exon7	c.G743A	p.C248Y	.	.	46	4	41	0	.	523
IL1RAP	3556	bcgsc.ca	37	3	190338217	190338217	+	Missense_Mutation	SNP	G	G	A	rs181996198	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL1RAP	NM_001167929	exon5	c.G691A	p.V231I	.	.	69	4	81	0	G|0.999;T|0.000	91
IL33	90865	bcgsc.ca	37	9	6241772	6241772	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL33	NM_001199640	exon2	c.T78C	p.C26C	.	.	113	5	214	0	.	90
IL33	90865	ucsc.edu;bcgsc.ca	37	9	6251188	6251188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL33	NM_001199640	exon4	c.C266T	p.S89F	.	.	39	4	54	0	.	90
IL3RA	3563	bcgsc.ca	37	X	1470994	1470994	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL3RA	NM_002183	exon5	c.T300C	p.S100S	.	.	72	4	139	1	.	41
IL6ST	3572	bcgsc.ca	37	5	55247426	55247426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL6ST	NM_002184	exon14	c.A1706G	p.N569S	.	.	80	4	65	1	.	290
IL7R	3575	bcgsc.ca	37	5	35857138	35857138	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IL7R	NM_002185	exon1	c.G59T	p.G20V	.	.	137	6	128	0	.	157
ILDR2	387597	bcgsc.ca	37	1	166896380	166896380	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ILDR2	NM_199351	exon7	c.A918G	p.R306R	.	.	138	7	84	2	.	91
IMPA1	3612	bcgsc.ca	37	8	82571690	82571690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IMPA1	NM_001144878	exon10	c.G907T	p.D303Y	.	.	62	4	67	0	.	226
IMPDH1	3614	ucsc.edu;bcgsc.ca	37	7	128038520	128038520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IMPDH1	NM_000883	exon10	c.A1022G	p.D341G	.	.	42	4	63	0	.	230
IMPG2	50939	bcgsc.ca	37	3	100972623	100972623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IMPG2	NM_016247	exon11	c.A1156G	p.R386G	.	.	66	4	53	0	.	93
INADL	10207	bcgsc.ca	37	1	62393450	62393450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INADL	NM_176877	exon27	c.G3619T	p.A1207S	.	.	66	4	83	0	.	94
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105175662	105175662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon11	c.C1994T	p.T665I	.	.	26	4	37	0	.	492
INF2	64423	ucsc.edu;bcgsc.ca	37	14	105178003	105178003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INF2	NM_022489	exon16	c.C2456T	p.P819L	.	.	41	4	80	0	.	492
INPP4B	8821	ucsc.edu;bcgsc.ca	37	4	143043367	143043367	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INPP4B	NM_003866	exon22	c.C2049A	p.A683A	.	.	48	5	54	0	.	228
INPP5F	22876	bcgsc.ca	37	10	121551449	121551449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INPP5F	NM_014937	exon5	c.G513T	p.M171I	.	.	117	5	117	1	.	229
INSIG1	3638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155094019	155094019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INSIG1	NM_005542	exon4	c.G596A	p.G199D	.	.	209	41	246	0	.	90
INTS1	26173	ucsc.edu	37	7	1512748	1512748	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080453	exon43	c.G6030A	p.R2010R	.	.	44	4	33	0	.	.
INTS3	65123	bcgsc.ca	37	1	153719443	153719443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INTS3	NM_023015	exon4	c.A329G	p.D110G	.	.	113	6	80	1	.	93
INTS6	26512	bcgsc.ca	37	13	51948928	51948928	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	INTS6	NM_012141	exon14	c.A1734G	p.Q578Q	.	.	92	4	113	0	.	227
IP6K1	9807	bcgsc.ca	37	3	49765647	49765647	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IP6K1	NM_153273	exon5	c.G681A	p.M227I	.	.	52	5	50	0	.	265
IPO11	51194	bcgsc.ca	37	5	61821995	61821995	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IPO11	NM_001134779	exon21	c.G2043T	p.L681L	.	.	54	4	39	0	.	227
IPO7	10527	bcgsc.ca	37	11	9424860	9424860	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IPO7	NM_006391	exon2	c.C108T	p.V36V	.	.	147	6	102	0	.	271
IQCD	115811	bcgsc.ca	37	12	113645440	113645440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQCD	NM_138451	exon2	c.G532T	p.A178S	.	.	94	5	95	0	.	91
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91020941	91020941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQGAP1	NM_003870	exon26	c.C3149T	p.T1050M	.	.	67	15	63	0	.	950
IQGAP3	128239	bcgsc.ca	37	1	156496311	156496311	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQGAP3	NM_178229	exon38	c.C4863A	p.I1621I	.	.	79	5	67	0	.	96
IQUB	154865	bcgsc.ca	37	7	123101661	123101661	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IQUB	NM_178827	exon12	c.1759-2A>T	.	.	.	53	4	51	0	.	156
IRAK4	51135	bcgsc.ca	37	12	44180345	44180345	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IRAK4	NM_016123	exon11	c.A1332G	p.R444R	.	.	160	6	189	0	.	1366
IREB2	3658	bcgsc.ca	37	15	78770691	78770691	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IREB2	NM_004136	exon10	c.A1248G	p.K416K	.	.	69	4	72	0	.	90
IRF2BPL	64207	bcgsc.ca	37	14	77493474	77493474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IRF2BPL	NM_024496	exon1	c.C662A	p.A221E	.	.	30	4	26	0	.	90
IRF6	3664	bcgsc.ca	37	1	209965616	209965616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IRF6	NM_006147	exon6	c.C665T	p.P222L	.	.	85	4	54	0	.	92
IRGQ	126298	bcgsc.ca	37	19	44099136	44099136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IRGQ	NM_001007561	exon2	c.G355T	p.G119W	.	.	50	4	58	1	.	92
ISCA2	122961	bcgsc.ca	37	14	74960986	74960986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ISCA2	NM_194279	exon3	c.G183T	p.L61F	.	.	19	4	70	0	.	90
ISL1	3670	ucsc.edu;bcgsc.ca	37	5	50685754	50685754	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ISL1	NM_002202	exon4	c.C753T	p.P251P	.	.	42	4	34	0	.	515
ITFG2	55846	bcgsc.ca	37	12	2929969	2929969	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITFG2	NM_018463	exon6	c.T626C	p.I209T	.	.	67	4	85	0	.	90
ITGA4	3676	bcgsc.ca	37	2	182388198	182388198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITGA4	NM_000885	exon19	c.A2108G	p.N703S	.	.	150	5	167	1	.	230
ITGAV	3685	bcgsc.ca	37	2	187511493	187511493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITGAV	NM_002210	exon13	c.A1240G	p.N414D	.	.	126	6	135	1	.	653
ITGB3	3690	bcgsc.ca	37	17	45369562	45369562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITGB3	NM_000212	exon10	c.T1318C	p.F440L	.	.	52	4	64	1	.	714
ITGB3	3690	bcgsc.ca	37	17	45380097	45380097	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITGB3	NM_000212	exon13	c.C2025T	p.G675G	.	.	68	4	65	0	.	714
ITIH6	347365	bcgsc.ca	37	X	54781467	54781467	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_198510	exon9	c.C3185A	p.S1062Y	.	.	75	4	102	0	.	.
ITM2C	81618	bcgsc.ca	37	2	231740399	231740399	+	Missense_Mutation	SNP	G	G	T	rs142466685	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITM2C	NM_030926	exon3	c.G326T	p.R109L	.	.	63	4	95	0	G|1.000;A|0.000	90
ITPR2	3709	bcgsc.ca	37	12	26568364	26568364	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITPR2	NM_002223	exon51	c.G7178T	p.R2393L	.	.	59	4	113	0	.	542
ITPR2	3709	bcgsc.ca	37	12	26628250	26628250	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITPR2	NM_002223	exon45	c.T6321C	p.N2107N	.	.	65	4	77	0	.	542
ITPR3	3710	bcgsc.ca	37	6	33657952	33657952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ITPR3	NM_002224	exon51	c.C7009A	p.H2337N	.	.	153	6	72	1	.	1085
IVD	3712	bcgsc.ca	37	15	40710392	40710392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	IVD	NM_002225	exon12	c.A1211G	p.E404G	.	.	72	5	74	0	.	91
JMJD1C	221037	bcgsc.ca	37	10	64967724	64967724	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	JMJD1C	NM_032776	exon10	c.G3705T	p.V1235V	.	.	106	5	161	0	.	275
JMJD1C	221037	bcgsc.ca	37	10	64967951	64967951	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	JMJD1C	NM_032776	exon10	c.G3478T	p.V1160L	.	.	183	6	182	0	.	275
JPH4	84502	bcgsc.ca	37	14	24038864	24038864	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	JPH4	NM_001146028	exon6	c.G1866T	p.L622L	.	.	64	4	100	1	.	92
KALRN	8997	bcgsc.ca	37	3	124117612	124117612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KALRN	NM_003947	exon13	c.A2234G	p.Q745R	.	.	78	4	93	0	.	738
KALRN	8997	bcgsc.ca	37	3	124175455	124175455	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KALRN	NM_003947	exon23	c.3730-2A>G	.	.	.	46	4	93	0	.	738
KALRN	8997	bcgsc.ca	37	3	124351315	124351315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KALRN	NM_001024660	exon35	c.T5225C	p.V1742A	.	.	83	5	82	0	.	738
KAT6A	7994	ucsc.edu	37	8	41906150	41906150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001099412	exon3	c.T346C	p.S116P	.	.	45	4	135	3	.	.
KATNA1	11104	bcgsc.ca	37	6	149918303	149918303	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KATNA1	NM_007044	exon10	c.A1173T	p.L391F	.	.	60	4	142	0	.	91
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105925003	105925003	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KBTBD3	NM_152433	exon3	c.C413G	p.S138C	.	.	72	26	138	0	.	91
KCNA1	3736	bcgsc.ca	37	12	5020696	5020696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNA1	NM_000217	exon2	c.A152G	p.Q51R	.	.	52	4	79	0	.	228
KCNA4	3739	bcgsc.ca	37	11	30032552	30032552	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNA4	NM_002233	exon2	c.G1674T	p.V558V	.	.	93	5	80	0	.	517
KCNB2	9312	ucsc.edu;bcgsc.ca	37	8	73849698	73849698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNB2	NM_004770	exon3	c.C2108A	p.S703Y	.	.	49	4	40	0	.	158
KCNH2	3757	bcgsc.ca	37	7	150654443	150654443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNH2	NM_000238	exon5	c.A1064G	p.D355G	.	.	122	5	161	0	.	94
KCNH7	90134	bcgsc.ca	37	2	163374415	163374415	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNH7	NM_033272	exon4	c.T717C	p.S239S	.	.	117	5	142	3	.	95
KCNIP1	30820	bcgsc.ca	37	5	169780912	169780912	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNIP1	NM_001034838	exon1	c.G32A	p.G11E	.	.	56	4	48	0	.	92
KCNJ18	100134444	bcgsc.ca	37	17	21318937	21318937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001194958	exon3	c.T283C	p.W95R	.	.	78	4	108	1	.	.
KCNK10	54207	ucsc.edu;bcgsc.ca	37	14	88654418	88654418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNK10	NM_138318	exon6	c.A904G	p.K302E	.	.	40	4	58	0	.	95
KCNQ4	9132	bcgsc.ca	37	1	41296901	41296901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNQ4	NM_004700	exon10	c.C1438A	p.Q480K	.	.	60	4	111	1	.	90
KCNT1	57582	ucsc.edu;bcgsc.ca	37	9	138661869	138661869	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNT1	NM_020822	exon16	c.C1587A	p.L529L	.	.	35	4	72	0	.	137
KCNT2	343450	bcgsc.ca	37	1	196197391	196197391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNT2	NM_198503	exon28	c.T3371C	p.V1124A	.	.	166	6	117	0	.	159
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36788605	36788605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KCNU1	NM_001031836	exon25	c.G2873T	p.R958I	.	.	32	5	94	0	.	23
KDM2A	22992	ucsc.edu;bcgsc.ca	37	11	66999328	66999328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM2A	NM_012308	exon12	c.A1376G	p.E459G	.	.	17	4	42	0	.	661
KDM3A	55818	bcgsc.ca	37	2	86702070	86702070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM3A	NM_001146688	exon12	c.G1896A	p.M632I	.	.	102	5	154	3	.	291
KDM4A	9682	ucsc.edu;bcgsc.ca	37	1	44132198	44132198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDM4A	NM_014663	exon7	c.T749C	p.L250P	.	.	30	4	49	0	.	227
KDR	3791	bcgsc.ca	37	4	55953878	55953878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KDR	NM_002253	exon27	c.G3558A	p.M1186I	.	.	59	4	86	0	.	2298
KIAA0196	9897	bcgsc.ca	37	8	126093954	126093954	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA0196	NM_014846	exon5	c.A467G	p.K156R	.	.	77	4	52	0	.	92
KIAA0368	23392	bcgsc.ca	37	9	114213758	114213758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA0368	NM_001080398	exon4	c.C634A	p.L212I	.	.	65	5	87	0	.	68
KIAA0408	9729	bcgsc.ca	37	6	127768600	127768600	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA0408	NM_014702	exon5	c.A864G	p.R288R	.	.	82	5	144	0	.	90
KIAA0907	22889	bcgsc.ca	37	1	155885757	155885757	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA0907	NM_014949	exon14	c.1554-2A>T	.	.	.	72	5	52	0	.	90
KIAA0922	23240	bcgsc.ca	37	4	154505996	154505996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA0922	NM_001131007	exon12	c.C1070T	p.S357L	.	.	60	4	91	0	.	92
KIAA1009	22832	bcgsc.ca	37	6	84885025	84885025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1009	NM_014895	exon14	c.G1705T	p.D569Y	.	.	82	6	146	0	.	91
KIAA1033	23325	bcgsc.ca	37	12	105508153	105508153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1033	NM_015275	exon4	c.T269C	p.V90A	.	.	134	5	140	0	.	91
KIAA1033	23325	bcgsc.ca	37	12	105519803	105519803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1033	NM_015275	exon11	c.G808T	p.D270Y	.	.	102	5	95	0	.	91
KIAA1109	84162	bcgsc.ca	37	4	123184637	123184637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1109	NM_015312	exon42	c.G7023T	p.L2341F	.	.	113	5	160	0	.	80
KIAA1324	57535	bcgsc.ca	37	1	109743472	109743472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1324	NM_020775	exon21	c.T2923C	p.F975L	.	.	77	4	59	0	.	157
KIAA1432	57589	ucsc.edu;bcgsc.ca	37	9	5774022	5774022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1432	NM_020829	exon26	c.G4048A	p.E1350K	.	.	48	5	111	0	.	90
KIAA1467	57613	bcgsc.ca	37	12	13220146	13220146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1467	NM_020853	exon7	c.G1058T	p.S353I	.	.	60	5	86	0	.	92
KIAA1468	57614	bcgsc.ca	37	18	59855073	59855073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1468	NM_020854	exon1	c.A335G	p.E112G	.	.	53	4	44	0	.	158
KIAA1468	57614	bcgsc.ca	37	18	59925197	59925197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA1468	NM_020854	exon14	c.C1913T	p.S638F	.	.	95	5	133	0	.	158
KIAA2022	340533	bcgsc.ca	37	X	73960798	73960798	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA2022	NM_001008537	exon3	c.A3594G	p.K1198K	.	.	112	5	149	0	.	183
KIAA2022	340533	bcgsc.ca	37	X	73960855	73960855	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIAA2022	NM_001008537	exon3	c.T3537C	p.S1179S	.	.	152	6	183	0	.	183
KIF12	113220	ucsc.edu	37	9	116857308	116857308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF12	NM_138424	exon8	c.C700T	p.P234S	.	.	27	4	66	0	.	90
KIF13B	23303	ucsc.edu;bcgsc.ca	37	8	28988090	28988090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF13B	NM_015254	exon24	c.C3035T	p.A1012V	.	.	35	4	90	0	.	22
KIF1A	547	bcgsc.ca	37	2	241724418	241724418	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF1A	NM_001244008	exon7	c.C708A	p.I236I	.	.	163	8	168	0	.	91
KIF22	3835	ucsc.edu;bcgsc.ca	37	16	29816207	29816207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF22	NM_007317	exon12	c.C1750A	p.L584I	.	.	33	4	26	0	.	68
KIF24	347240	bcgsc.ca	37	9	34310907	34310907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF24	NM_194313	exon2	c.G438T	p.Q146H	.	.	148	5	303	0	.	22
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30897746	30897746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF3B	NM_004798	exon2	c.166delA	p.T56fs	.	.	68	19	97	0	.	517
KIF4B	285643	bcgsc.ca	37	5	154393437	154393437	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIF4B	NM_001099293	exon1	c.G18T	p.K6N	.	.	125	5	127	0	.	1
KIFAP3	22920	bcgsc.ca	37	1	169890894	169890894	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIFAP3	NM_014970	exon20	c.G2302T	p.V768F	.	.	59	4	42	0	.	91
KIRREL3	84623	bcgsc.ca	37	11	126396431	126396431	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIRREL3	NM_032531	exon4	c.283+2T>A	.	.	.	24	3	43	0	.	25
KIRREL	55243	bcgsc.ca	37	1	158064811	158064811	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KIRREL	NM_018240	exon15	c.C2175T	p.D725D	.	.	40	4	28	0	.	91
KLC1	3831	bcgsc.ca	37	14	104129248	104129248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLC1	NM_182923	exon5	c.C781A	p.L261M	.	.	78	4	116	0	.	90
KLHDC3	116138	bcgsc.ca	37	6	42986841	42986841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLHDC3	NM_057161	exon9	c.A941G	p.E314G	.	.	67	4	52	0	.	91
KLHL15	80311	bcgsc.ca	37	X	24006721	24006721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLHL15	NM_030624	exon4	c.G1132T	p.G378W	.	.	66	4	82	0	.	131
KLK4	9622	ucsc.edu;bcgsc.ca	37	19	51411692	51411692	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KLK4	NM_004917	exon4	c.A535G	p.S179G	.	.	43	5	38	0	.	226
KNTC1	9735	bcgsc.ca	37	12	123103034	123103034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KNTC1	NM_014708	exon59	c.T6091C	p.C2031R	.	.	51	4	70	0	.	543
KRAS	3845	bcgsc.ca	37	12	25380248	25380248	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRAS	NM_004985	exon3	c.G210A	p.Q70Q	.	.	55	4	86	0	.	92875
KRIT1	889	bcgsc.ca	37	7	91870461	91870461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRIT1	NM_194456	exon6	c.G108T	p.L36F	.	.	86	4	163	0	.	132
KRT35	3886	bcgsc.ca	37	17	39633364	39633364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRT35	NM_002280	exon7	c.C1312T	p.R438C	.	.	56	4	93	0	.	92
KRT35	3886	ucsc.edu;bcgsc.ca	37	17	39636914	39636914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRT35	NM_002280	exon1	c.T436C	p.S146P	.	.	28	4	40	0	.	92
KRT5	3852	bcgsc.ca	37	12	52910950	52910950	+	Missense_Mutation	SNP	A	A	G	rs2669875	bycluster;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRT5	NM_000424	exon6	c.T1159C	p.S387P	.	.	128	5	108	0	A|1.000;|0.000	90
KRTAP10-1	386677	bcgsc.ca	37	21	45959607	45959607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRTAP10-1	NM_198691	exon1	c.G427T	p.V143L	.	.	100	6	233	0	.	91
KRTAP13-4	284827	bcgsc.ca	37	21	31802714	31802714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRTAP13-4	NM_181600	exon1	c.T121C	p.C41R	.	.	52	4	80	2	.	90
KRTAP4-11	653240	bcgsc.ca	37	17	39274157	39274157	+	Silent	SNP	G	G	A	rs76095941		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_033059	exon1	c.C411T	p.P137P	.	.	61	15	42	3	G|0.500;A|0.500	.
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_033059	exon1	c.C481G	p.L161V	.	.	51	9	66	1	G|0.500;C|0.500	.
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	35	7	28	2	.	.
KRTAP5-4	387267	broad.mit.edu	37	11	1643216	1643216	+	Silent	SNP	C	C	T	rs184923323	by1000genomes	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001012709	exon1	c.G108A	p.G36G	.	.	94	6	63	2	C|0.983;T|0.017	.
KRTAP5-4	387267	broad.mit.edu	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001012709	exon1	c.G66A	p.G22G	.	.	161	10	115	3	.	.
KRTAP6-1	337966	bcgsc.ca	37	21	31986175	31986175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KRTAP6-1	NM_181602	exon1	c.T49C	p.F17L	.	.	127	5	212	3	.	68
KSR1	8844	ucsc.edu;bcgsc.ca	37	17	25944438	25944438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KSR1	NM_014238	exon20	c.T2266C	p.F756L	.	.	24	4	22	0	.	964
KTI12	112970	bcgsc.ca	37	1	52499194	52499194	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KTI12	NM_138417	exon1	c.G240T	p.S80S	.	.	41	4	38	0	.	91
KTN1	3895	bcgsc.ca	37	14	56096709	56096709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	KTN1	NM_004986	exon7	c.T1115C	p.V372A	.	.	159	5	244	0	.	1147
L2HGDH	79944	bcgsc.ca	37	14	50713793	50713793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	L2HGDH	NM_024884	exon10	c.C1375A	p.Q459K	.	.	124	8	240	1	.	92
L3MBTL1	26013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42143656	42143656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	L3MBTL1	NM_032107	exon5	c.444delC	p.H148fs	.	.	65	22	42	0	.	227
L3MBTL2	83746	bcgsc.ca	37	22	41623809	41623809	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	L3MBTL2	NM_031488	exon15	c.A1824G	p.E608E	.	.	88	5	122	0	.	92
LAMA1	284217	bcgsc.ca	37	18	7042238	7042238	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA1	NM_005559	exon9	c.T1167C	p.Y389Y	.	.	74	4	95	0	.	149
LAMA1	284217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6975955	6975955	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA1	NM_005559	exon45	c.A6470T	p.Y2157F	.	.	89	24	109	0	.	149
LAMA2	3908	bcgsc.ca	37	6	129465107	129465107	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA2	NM_000426	exon5	c.A701G	p.E234G	.	.	51	4	91	1	.	162
LAMA4	3910	bcgsc.ca	37	6	112443229	112443229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA4	NM_001105206	exon32	c.A4463G	p.D1488G	.	.	108	5	199	0	.	140
LAMA5	3911	bcgsc.ca	37	20	60888440	60888440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA5	NM_005560	exon64	c.T8735C	p.L2912P	.	.	49	4	32	0	.	93
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60886538	60886538	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA5	NM_005560	exon72	c.T9861C	p.N3287N	.	.	65	23	72	0	.	93
LAMA5	3911	ucsc.edu	37	20	60911827	60911827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAMA5	NM_005560	exon17	c.C2180A	p.P727H	.	.	32	4	35	0	.	93
LARP1	23367	bcgsc.ca	37	5	154191172	154191172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LARP1	NM_015315	exon18	c.T2822C	p.F941S	.	.	132	5	86	0	.	94
LARP1B	55132	bcgsc.ca	37	4	129100622	129100622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LARP1B	NM_018078	exon15	c.G1958T	p.W653L	.	.	68	4	113	1	.	68
LARP4B	23185	bcgsc.ca	37	10	882435	882435	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LARP4B	NM_015155	exon8	c.G658T	p.V220F	.	.	89	5	114	0	.	92
LAYN	143903	bcgsc.ca	37	11	111425955	111425955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LAYN	NM_001258390	exon6	c.C622A	p.P208T	.	.	93	5	141	0	.	90
LBP	3929	bcgsc.ca	37	20	36997799	36997799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LBP	NM_004139	exon10	c.T1142C	p.L381P	.	.	53	4	55	0	.	91
LCORL	254251	bcgsc.ca	37	4	17887697	17887697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LCORL	NM_001166139	exon6	c.T770C	p.V257A	.	.	81	4	126	0	.	90
LCP1	3936	ucsc.edu;bcgsc.ca	37	13	46725197	46725197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LCP1	NM_002298	exon8	c.G756T	p.L252F	.	.	31	4	39	0	.	685
LEO1	123169	bcgsc.ca	37	15	52230374	52230374	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LEO1	NM_138792	exon12	c.A1980G	p.E660E	.	.	304	7	284	0	.	68
LEPRE1	64175	bcgsc.ca	37	1	43224885	43224885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LEPRE1	NM_001146289	exon3	c.C795A	p.F265L	.	.	91	5	125	0	.	94
LEPRE1	64175	ucsc.edu;bcgsc.ca	37	1	43224989	43224989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LEPRE1	NM_001146289	exon3	c.G691T	p.A231S	.	.	50	5	69	0	.	94
LGI2	55203	bcgsc.ca	37	4	25026476	25026476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LGI2	NM_018176	exon4	c.A379G	p.N127D	.	.	40	4	69	0	.	90
LHFPL4	375323	bcgsc.ca	37	3	9594264	9594264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LHFPL4	NM_198560	exon2	c.G100T	p.A34S	.	.	77	5	78	0	.	71
LIG4	3981	bcgsc.ca	37	13	108861333	108861333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LIG4	NM_206937	exon3	c.G2284A	p.G762S	.	.	51	4	61	0	.	659
LIN9	286826	bcgsc.ca	37	1	226420800	226420800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LIN9	NM_173083	exon14	c.T1568C	p.I523T	.	.	199	6	119	0	.	90
LINGO2	158038	broad.mit.edu;bcgsc.ca	37	9	27950383	27950383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LINGO2	NM_001258282	exon7	c.T287A	p.V96E	.	.	92	10	176	1	.	516
LIPH	200879	bcgsc.ca	37	3	185270244	185270244	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LIPH	NM_139248	exon1	c.T16C	p.L6L	.	.	148	6	172	0	.	92
LMNA	4000	bcgsc.ca	37	1	156107462	156107462	+	Missense_Mutation	SNP	G	G	T	rs56673169	bycluster;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LMNA	NM_170707	exon10	c.G1626T	p.K542N	.	.	60	4	30	0	.	228
LMNB1	4001	bcgsc.ca	37	5	126140560	126140560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LMNB1	NM_005573	exon2	c.C452A	p.T151N	.	.	111	5	110	0	.	226
LMTK3	114783	bcgsc.ca	37	19	49013397	49013397	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LMTK3	NM_001080434	exon4	c.G331T	p.G111W	.	.	48	4	44	0	.	1357
LOC100131257	0	bcgsc.ca	37	7	7118350	7118350	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	48	4	54	0	.	.
LOC389705	0	bcgsc.ca	37	9	14997166	14997166	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	99	4	210	0	.	.
LOC642236	0	bcgsc.ca	37	9	68433548	68433548	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	409	43	569	19	.	.
LOC649395	0	bcgsc.ca	37	7	63894431	63894431	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	180	5	172	0	.	.
LONRF3	79836	bcgsc.ca	37	X	118143177	118143177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LONRF3	NM_001031855	exon7	c.A1619G	p.K540R	.	.	155	6	106	0	.	289
LPP	4026	bcgsc.ca	37	3	188327142	188327142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LPP	NM_005578	exon6	c.C623T	p.A208V	.	.	127	6	152	0	.	659
LPPR2	0	bcgsc.ca	37	19	11470258	11470258	+	Silent	SNP	G	G	A	rs145767785		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LPPR2	NM_022737	exon4	c.G117A	p.T39T	.	.	62	4	99	1	G|1.000;A|0.000	153
LRFN5	145581	bcgsc.ca	37	14	42360591	42360591	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRFN5	NM_152447	exon4	c.T1524C	p.F508F	.	.	77	4	160	0	.	97
LRP1	4035	bcgsc.ca	37	12	57561282	57561282	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRP1	NM_002332	exon19	c.C2970A	p.I990I	.	.	85	4	80	0	.	596
LRP1B	53353	bcgsc.ca	37	2	141773459	141773459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRP1B	NM_018557	exon13	c.G1996A	p.E666K	.	.	120	5	111	0	.	311
LRP2	4036	bcgsc.ca	37	2	170038065	170038065	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRP2	NM_004525	exon52	c.C10062A	p.T3354T	.	.	78	4	86	1	.	175
LRP4	4038	bcgsc.ca	37	11	46918439	46918439	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRP4	NM_002334	exon8	c.A903G	p.E301E	.	.	125	5	95	0	.	94
LRPPRC	10128	bcgsc.ca	37	2	44115754	44115754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRPPRC	NM_133259	exon38	c.G4170T	p.R1390S	.	.	98	5	98	1	.	93
LRPPRC	10128	bcgsc.ca	37	2	44204378	44204378	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRPPRC	NM_133259	exon4	c.T507C	p.L169L	.	.	67	4	83	0	.	93
LRRC16A	55604	bcgsc.ca	37	6	25495414	25495414	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRC16A	NM_001173977	exon16	c.A1296G	p.S432S	.	.	110	4	67	0	.	137
LRRC23	10233	bcgsc.ca	37	12	7023181	7023181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRC23	NM_006992	exon7	c.G885T	p.R295S	.	.	61	4	55	0	.	23
LRRC27	80313	bcgsc.ca	37	10	134165223	134165223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRC27	NM_001143758	exon7	c.C1039A	p.Q347K	.	.	46	4	72	0	.	91
LRRC6	23639	bcgsc.ca	37	8	133622444	133622444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRC6	NM_012472	exon10	c.A1108G	p.T370A	.	.	52	4	50	0	.	92
LRRC66	339977	bcgsc.ca	37	4	52883296	52883296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRC66	NM_001024611	exon1	c.G484T	p.D162Y	.	.	65	4	97	0	.	92
LRRC72	100506049	bcgsc.ca	37	7	16598626	16598626	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001195280	exon5	c.427+2T>A	.	.	.	252	8	262	0	.	.
LRRD1	401387	bcgsc.ca	37	7	91774343	91774343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001161528	exon5	c.G2442T	p.W814C	.	.	87	5	102	0	.	.
LRRK2	120892	bcgsc.ca	37	12	40643722	40643722	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRK2	NM_198578	exon8	c.A933G	p.S311S	.	.	50	4	60	0	.	533
LRRK2	120892	bcgsc.ca	37	12	40646750	40646750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRK2	NM_198578	exon11	c.T1220C	p.M407T	.	.	86	4	95	0	.	533
LRRK2	120892	bcgsc.ca	37	12	40758797	40758797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LRRK2	NM_198578	exon49	c.A7335G	p.I2445M	.	.	82	4	86	0	.	533
LSP1	4046	bcgsc.ca	37	11	1887890	1887890	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LSP1	NM_001242932	exon2	c.C186T	p.A62A	.	.	46	4	62	0	.	90
LTV1	84946	ucsc.edu	37	6	144165748	144165748	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LTV1	NM_032860	exon2	c.A129G	p.T43T	.	.	42	4	79	0	.	91
LUZP1	7798	bcgsc.ca	37	1	23419944	23419944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LUZP1	NM_033631	exon4	c.A811G	p.T271A	.	.	353	10	476	1	.	90
LUZP4	51213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114541215	114541215	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	LUZP4	NM_016383	exon4	c.A788G	p.Q263R	.	.	104	64	97	1	.	132
MADD	8567	ucsc.edu;bcgsc.ca	37	11	47308084	47308084	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MADD	NM_130470	exon15	c.A2652G	p.K884K	.	.	34	4	40	0	.	682
MAGEB3	4114	ucsc.edu;bcgsc.ca	37	X	30254253	30254253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAGEB3	NM_002365	exon5	c.C212A	p.T71N	.	.	45	4	46	0	.	130
MAGEE2	139599	bcgsc.ca	37	X	75003452	75003452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAGEE2	NM_138703	exon1	c.A1435G	p.K479E	.	.	90	4	91	0	.	132
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56415027	56415027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MALT1	NM_006785	exon17	c.G2428A	p.E810K	.	.	81	35	100	0	.	660
MAN1C1	57134	bcgsc.ca	37	1	26085132	26085132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAN1C1	NM_020379	exon6	c.T979C	p.F327L	.	.	29	4	43	0	.	91
MAOA	4128	ucsc.edu;bcgsc.ca	37	X	43571197	43571197	+	Missense_Mutation	SNP	A	A	G	rs1800464	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAOA	NM_000240	exon4	c.A385G	p.R129G	.	.	37	4	53	0	A|0.740;0|0.061	194
MAP1A	4130	ucsc.edu;bcgsc.ca	37	15	43821659	43821659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP1A	NM_002373	exon4	c.A7988G	p.H2663R	.	.	29	4	41	0	.	141
MAP1LC3B2	643246	bcgsc.ca	37	12	117013788	117013788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP1LC3B2	NM_001085481	exon2	c.A41T	p.E14V	.	.	67	5	104	0	.	68
MAP2	4133	bcgsc.ca	37	2	210559105	210559105	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP2	NM_002374	exon7	c.A2211G	p.G737G	.	.	118	6	166	0	.	591
MAP2K4P1	139201	bcgsc.ca	37	X	72745160	72745160	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	22	3	30	0	.	.
MAP3K13	9175	bcgsc.ca	37	3	185181413	185181413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP3K13	NM_004721	exon8	c.G1354A	p.E452K	.	.	114	5	129	0	.	548
MAP3K5	4217	bcgsc.ca	37	6	136977523	136977523	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP3K5	NM_005923	exon10	c.C1602T	p.A534A	.	.	45	4	94	0	.	982
MAP3K9	4293	bcgsc.ca	37	14	71216728	71216728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP3K9	NM_033141	exon4	c.G1072T	p.A358S	.	.	58	4	82	0	.	546
MAP4K4	9448	bcgsc.ca	37	2	102440500	102440500	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP4K4	NM_004834	exon4	c.T291C	p.H97H	.	.	140	5	155	0	.	547
MAP9	79884	bcgsc.ca	37	4	156268966	156268966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAP9	NM_001039580	exon14	c.C1913A	p.P638Q	.	.	120	5	215	1	.	91
MAPK6	5597	bcgsc.ca	37	15	52339205	52339205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MAPK6	NM_002748	exon2	c.C548A	p.S183Y	.	.	74	4	76	0	.	1403
MARK2	2011	bcgsc.ca	37	11	63663050	63663050	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MARK2	NM_004954	exon3	c.235-2A>G	.	.	.	56	4	109	0	.	766
MASTL	84930	bcgsc.ca	37	10	27450039	27450039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MASTL	NM_032844	exon4	c.A481G	p.N161D	.	.	177	7	206	0	.	522
MBD1	4152	ucsc.edu;bcgsc.ca	37	18	47800080	47800080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD1	NM_001204137	exon13	c.C1375A	p.H459N	.	.	46	4	76	0	.	228
MBD4	8930	bcgsc.ca	37	3	129151984	129151984	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD4	NM_003925	exon6	c.T1518C	p.L506L	.	.	92	4	89	0	.	228
MBD4	8930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129155490	129155490	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MBD4	NM_003925	exon3	c.A997T	p.I333L	.	.	143	23	180	0	.	228
MCAM	4162	bcgsc.ca	37	11	119183539	119183539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCAM	NM_006500	exon6	c.A680T	p.Y227F	.	.	37	4	58	0	.	137
MCCC2	64087	bcgsc.ca	37	5	70945000	70945000	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCCC2	NM_022132	exon14	c.T1293C	p.C431C	.	.	164	6	121	1	.	23
MCF2L2	23101	bcgsc.ca	37	3	182937711	182937711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCF2L2	NM_015078	exon21	c.G2303T	p.G768V	.	.	221	8	235	0	.	293
MCM6	4175	bcgsc.ca	37	2	136598470	136598470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCM6	NM_005915	exon17	c.G2401A	p.G801R	.	.	104	5	102	0	.	227
MCM7	4176	broad.mit.edu;mdanderson.org	37	7	99697309	99697309	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCM7	NM_005916	exon3	c.C179G	p.P60R	.	.	14	8	13	0	.	651
MCM9	254394	bcgsc.ca	37	6	119232843	119232843	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MCM9	NM_017696	exon6	c.G1122A	p.L374L	.	.	73	4	100	0	.	515
MDC1	9656	broad.mit.edu	37	6	30681089	30681089	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MDC1	NM_014641	exon5	c.G630A	p.P210P	.	.	29	4	31	0	.	273
ME2	4200	bcgsc.ca	37	18	48473519	48473519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ME2	NM_002396	exon16	c.G1720A	p.E574K	.	.	95	5	148	0	.	90
MED12L	116931	ucsc.edu;bcgsc.ca	37	3	150873994	150873994	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED12L	NM_053002	exon5	c.G603T	p.K201N	.	.	33	4	41	1	.	576
MED13L	23389	bcgsc.ca	37	12	116403937	116403937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED13L	NM_015335	exon29	c.T6337C	p.F2113L	.	.	106	5	95	0	.	232
MED1	5469	bcgsc.ca	37	17	37571517	37571517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED1	NM_004774	exon15	c.T1373A	p.V458E	.	.	142	5	119	0	.	620
MED17	9440	bcgsc.ca	37	11	93527184	93527184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED17	NM_004268	exon5	c.T842C	p.L281S	.	.	51	4	75	0	.	187
MED23	9439	bcgsc.ca	37	6	131919435	131919435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MED23	NM_015979	exon21	c.C2617A	p.L873I	.	.	81	4	125	0	.	24
MEFV	4210	bcgsc.ca	37	16	3299521	3299521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MEFV	NM_000243	exon3	c.C1170A	p.H390Q	.	.	70	5	72	0	.	228
MEGF9	1955	bcgsc.ca	37	9	123370188	123370188	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001080497	exon5	c.C1188A	p.I396I	.	.	86	4	136	0	.	.
MEIS1	4211	bcgsc.ca	37	2	66670141	66670141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MEIS1	NM_002398	exon6	c.C591A	p.D197E	.	.	78	6	126	0	.	226
METTL12	751071	ucsc.edu;bcgsc.ca	37	11	62434009	62434009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL12	NM_001043229	exon3	c.A209G	p.E70G	.	.	31	4	44	1	.	22
METTL3	56339	bcgsc.ca	37	14	21967194	21967194	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL3	NM_019852	exon10	c.C1606A	p.R536R	.	.	55	4	68	0	.	92
METTL7A	25840	bcgsc.ca	37	12	51319142	51319142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL7A	NM_014033	exon1	c.G321T	p.L107F	.	.	66	4	78	0	.	90
METTL7B	196410	bcgsc.ca	37	12	56077625	56077625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	METTL7B	NM_152637	exon2	c.T527C	p.V176A	.	.	162	7	144	0	.	514
MFN1	55669	broad.mit.edu;bcgsc.ca	37	3	179069781	179069781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MFN1	NM_033540	exon3	c.A206G	p.E69G	.	.	206	11	230	1	.	155
MGAM	8972	bcgsc.ca	37	7	141731556	141731556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MGAM	NM_004668	exon13	c.T1547C	p.L516P	.	.	101	5	160	0	.	70
MGAT5	4249	bcgsc.ca	37	2	135095917	135095917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MGAT5	NM_002410	exon6	c.A733G	p.M245V	.	.	141	5	163	0	.	93
MGME1	92667	bcgsc.ca	37	20	17968820	17968820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_052865	exon4	c.G743T	p.C248F	.	.	84	4	52	0	.	.
MIB1	57534	bcgsc.ca	37	18	19429328	19429328	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MIB1	NM_020774	exon17	c.A2565G	p.E855E	.	.	85	4	112	0	.	526
MICAL3	57553	bcgsc.ca	37	22	18387447	18387447	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MICAL3	NM_015241	exon3	c.T423C	p.G141G	.	.	68	4	94	0	.	68
MIER2	54531	bcgsc.ca	37	19	334472	334472	+	Silent	SNP	C	C	T	rs142920057	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MIER2	NM_017550	exon3	c.G171A	p.R57R	.	.	55	4	49	0	C|1.000;G|0.000	90
MIR193B	574455	bcgsc.ca	37	16	14397883	14397883	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	74	4	81	0	.	.
MIR629	693214	ucsc.edu;mdanderson.org	37	15	70371772	70371772	+	RNA	SNP	C	C	A	rs111899904	byfrequency;by1000genomes;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	27	9	28	0	C|0.993;T|0.007	.
MIR631	693216	ucsc.edu	37	15	75646006	75646006	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	29	1	33	0	.	.
MLC1	23209	ucsc.edu;bcgsc.ca	37	22	50512719	50512719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLC1	NM_015166	exon8	c.A640G	p.I214V	.	.	37	4	39	0	.	91
MLKL	197259	bcgsc.ca	37	16	74729407	74729407	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLKL	NM_152649	exon2	c.C249T	p.S83S	.	.	71	4	155	0	.	561
MLL2	8085	bcgsc.ca	37	12	49426245	49426245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLL2	NM_003482	exon39	c.G12243T	p.Q4081H	.	.	51	4	46	1	.	612
MLL3	58508	bcgsc.ca	37	7	151879270	151879270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLL3	NM_170606	exon36	c.C5675T	p.P1892L	.	.	113	5	130	0	.	1398
MLLT4	4301	bcgsc.ca	37	6	168344111	168344111	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLLT4	NM_001040000	exon24	c.C3174T	p.L1058L	.	.	91	4	183	0	.	685
MLNR	2862	ucsc.edu;bcgsc.ca	37	13	49796480	49796480	+	Silent	SNP	C	C	A	rs201685217	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLNR	NM_001507	exon2	c.C1206A	p.T402T	.	.	30	4	56	0	.	90
MLST8	64223	bcgsc.ca	37	16	2256580	2256580	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MLST8	NM_001199174	exon4	c.C264A	p.I88I	.	.	72	4	62	0	.	392
MMP1	4312	bcgsc.ca	37	11	102668007	102668007	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MMP1	NM_002421	exon2	c.G330T	p.E110D	.	.	60	4	93	1	.	229
MMP20	9313	bcgsc.ca	37	11	102480663	102480663	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MMP20	NM_004771	exon4	c.G622A	p.A208T	.	.	70	4	132	0	.	226
MMS22L	253714	bcgsc.ca	37	6	97677172	97677172	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MMS22L	NM_198468	exon14	c.A1637G	p.D546G	.	.	47	4	85	0	.	92
MORC4	79710	bcgsc.ca	37	X	106199715	106199715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MORC4	NM_001085354	exon13	c.C1504A	p.H502N	.	.	151	5	93	0	.	131
MORC4	79710	bcgsc.ca	37	X	106236530	106236530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MORC4	NM_001085354	exon3	c.A238G	p.N80D	.	.	165	5	115	0	.	131
MORN3	283385	bcgsc.ca	37	12	122090653	122090653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MORN3	NM_173855	exon5	c.A710G	p.E237G	.	.	85	5	87	0	.	90
MOV10L1	54456	bcgsc.ca	37	22	50552959	50552959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MOV10L1	NM_018995	exon7	c.A1034G	p.D345G	.	.	97	4	123	0	.	93
MPO	4353	bcgsc.ca	37	17	56358059	56358059	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MPO	NM_000250	exon1	c.G61A	p.G21R	.	.	136	5	87	0	.	156
MPP4	58538	ucsc.edu;bcgsc.ca	37	2	202552052	202552052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MPP4	NM_033066	exon5	c.C322A	p.Q108K	.	.	49	4	67	0	.	22
MPP5	64398	bcgsc.ca	37	14	67784126	67784126	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MPP5	NM_022474	exon11	c.A1299G	p.G433G	.	.	102	5	265	0	.	91
MRPL30	51263	bcgsc.ca	37	2	99804639	99804639	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MRPL30	NM_145212	exon3	c.52-1G>T	.	.	.	231	6	219	3	.	91
MRPL38	64978	bcgsc.ca	37	17	73895622	73895622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MRPL38	NM_032478	exon7	c.T844C	p.S282P	.	.	310	9	166	1	.	46
MRPS9	64965	bcgsc.ca	37	2	105708966	105708966	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MRPS9	NM_182640	exon8	c.A759G	p.K253K	.	.	79	4	87	0	.	90
MRVI1	10335	bcgsc.ca	37	11	10645390	10645390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MRVI1	NM_130385	exon10	c.T1382C	p.M461T	.	.	88	5	58	0	.	25
MS4A1	931	bcgsc.ca	37	11	60235755	60235755	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MS4A1	NM_152866	exon8	c.A708G	p.K236K	.	.	77	3	168	0	.	525
MS4A5	64232	bcgsc.ca	37	11	60201251	60201251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MS4A5	NM_023945	exon4	c.G353A	p.R118Q	.	.	73	4	136	0	.	154
MSH4	4438	bcgsc.ca	37	1	76343839	76343839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MSH4	NM_002440	exon11	c.G1376T	p.G459V	.	.	121	5	146	0	.	660
MSN	4478	bcgsc.ca	37	X	64956691	64956691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MSN	NM_002444	exon9	c.A994G	p.M332V	.	.	161	6	167	1	.	1086
MSRB1	51734	bcgsc.ca	37	16	1990835	1990835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	49	4	53	1	.	.
MTBP	27085	bcgsc.ca	37	8	121468797	121468797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTBP	NM_022045	exon7	c.T634C	p.C212R	.	.	92	4	90	0	.	228
MTERFD1	51001	bcgsc.ca	37	8	97270882	97270882	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTERFD1	NM_015942	exon2	c.A37T	p.N13Y	.	.	121	7	118	0	.	91
MTERFD2	130916	bcgsc.ca	37	2	242035788	242035788	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTERFD2	NM_182501	exon4	c.A771G	p.S257S	.	.	123	7	91	0	.	91
MTF2	22823	bcgsc.ca	37	1	93602478	93602478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTF2	NM_007358	exon15	c.C1676T	p.A559V	.	.	65	5	89	0	.	92
MTFR1L	56181	bcgsc.ca	37	1	26153311	26153311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001099627	exon5	c.G445T	p.D149Y	.	.	83	4	101	0	.	.
MTMR11	10903	bcgsc.ca	37	1	149907562	149907562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTMR11	NM_001145862	exon3	c.A179G	p.K60R	.	.	61	4	44	0	.	90
MTMR4	9110	bcgsc.ca	37	17	56573227	56573227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTMR4	NM_004687	exon16	c.A2276G	p.E759G	.	.	78	5	40	0	.	91
MTMR4	9110	bcgsc.ca	37	17	56584548	56584548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTMR4	NM_004687	exon9	c.G798T	p.R266S	.	.	51	4	43	0	.	91
MTO1	25821	bcgsc.ca	37	6	74190464	74190464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTO1	NM_133645	exon8	c.T1271C	p.V424A	.	.	80	4	166	2	.	96
MTRR	4552	bcgsc.ca	37	5	7895924	7895924	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MTRR	NM_024010	exon12	c.A1716G	p.P572P	.	.	52	4	77	0	.	91
MUC20	200958	bcgsc.ca	37	3	195447933	195447933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_152673	exon1	c.G55T	p.G19W	.	.	208	8	222	2	.	.
MUC21	394263	bcgsc.ca	37	6	30954176	30954176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC21	NM_001010909	exon2	c.T224C	p.V75A	.	.	210	11	125	1	.	92
MUC2	4583	bcgsc.ca	37	11	1101652	1101652	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC2	NM_002457	exon43	c.C7653A	p.F2551L	.	.	60	4	45	0	.	90
MUC2	4583	ucsc.edu	37	11	1081751	1081751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC2	NM_002457	exon13	c.A1679G	p.Q560R	.	.	46	4	62	0	.	90
MUC4	4585	broad.mit.edu	37	3	195510122	195510122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC4	NM_018406	exon2	c.G8329T	p.V2777L	.	.	269	10	312	1	.	90
MUC6	4588	bcgsc.ca	37	11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	rs113964902		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC6	NM_005961	exon31	c.C5091A	p.H1697Q	.	.	1654	66	1441	32	G|0.500;T|0.500	23
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1026952	1026952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MUC6	NM_005961	exon19	c.G2383A	p.G795S	.	.	84	30	60	0	.	23
MYBPC1	4604	ucsc.edu	37	12	102074143	102074143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYBPC1	NM_206819	exon29	c.A3269G	p.N1090S	.	.	44	4	56	0	.	94
MYBPC2	4606	bcgsc.ca	37	19	50964905	50964905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYBPC2	NM_004533	exon25	c.G3038A	p.G1013E	.	.	69	4	86	0	.	67
MYCBP2	23077	bcgsc.ca	37	13	77669573	77669573	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYCBP2	NM_015057	exon58	c.T10119C	p.S3373S	.	.	48	4	87	0	.	236
MYCBP2	23077	bcgsc.ca	37	13	77730207	77730207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYCBP2	NM_015057	exon46	c.G6901A	p.V2301I	.	.	65	4	80	0	.	236
MYH11	4629	bcgsc.ca	37	16	15808901	15808901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH11	NM_001040114	exon41	c.G5672A	p.R1891K	.	.	65	4	53	1	.	666
MYH11	4629	bcgsc.ca	37	16	15814170	15814170	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH11	NM_001040114	exon36	c.4813-1G>T	.	.	.	67	4	59	0	.	666
MYH1	4619	bcgsc.ca	37	17	10417389	10417389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH1	NM_005963	exon7	c.T586C	p.F196L	.	.	105	6	152	0	.	171
MYH2	4620	bcgsc.ca	37	17	10436600	10436600	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH2	NM_001100112	exon22	c.2441+2T>A	.	.	.	70	4	88	0	.	194
MYH2	4620	bcgsc.ca	37	17	10438455	10438455	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH2	NM_017534	exon19	c.G2115A	p.L705L	.	.	85	4	191	0	.	194
MYH3	4621	bcgsc.ca	37	17	10535159	10535159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYH3	NM_002470	exon35	c.A5131G	p.N1711D	.	.	67	4	100	0	.	95
MYLK4	340156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	2685624	2685624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYLK4	NM_001012418	exon6	c.G451A	p.E151K	.	.	92	25	75	0	.	150
MYO1D	4642	bcgsc.ca	37	17	31094723	31094723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO1D	NM_015194	exon7	c.G762T	p.M254I	.	.	44	4	66	0	.	137
MYO1E	4643	ucsc.edu;bcgsc.ca	37	15	59470655	59470655	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO1E	NM_004998	exon19	c.C1986A	p.V662V	.	.	46	6	57	0	.	514
MYO3A	53904	bcgsc.ca	37	10	26285433	26285433	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO3A	NM_017433	exon5	c.A318G	p.G106G	.	.	168	5	176	1	.	1007
MYO3A	53904	bcgsc.ca	37	10	26463255	26463255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO3A	NM_017433	exon30	c.G4062T	p.Q1354H	.	.	172	8	217	0	.	1007
MYO5C	55930	bcgsc.ca	37	15	52511996	52511996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO5C	NM_018728	exon31	c.C3745A	p.Q1249K	.	.	116	5	148	1	.	145
MYO7B	4648	bcgsc.ca	37	2	128366345	128366345	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYO7B	NM_001080527	exon22	c.C2706T	p.R902R	.	.	56	4	71	0	.	47
MYOM1	8736	bcgsc.ca	37	18	3079176	3079176	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYOM1	NM_019856	exon34	c.4360+1G>A	.	.	.	63	4	105	0	.	94
MYOM1	8736	bcgsc.ca	37	18	3089181	3089181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYOM1	NM_003803	exon29	c.G4128T	p.L1376F	.	.	195	6	294	0	.	94
MYOM3	127294	bcgsc.ca	37	1	24392430	24392430	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYOM3	NM_152372	exon29	c.A3485G	p.D1162G	.	.	63	4	89	1	.	93
MYOM3	127294	bcgsc.ca	37	1	24418664	24418664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYOM3	NM_152372	exon11	c.G1232A	p.R411Q	.	.	69	4	95	1	.	93
MYOM3	127294	bcgsc.ca	37	1	24424461	24424461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	MYOM3	NM_152372	exon7	c.A697G	p.K233E	.	.	95	5	155	1	.	93
N4BP2L2	10443	bcgsc.ca	37	13	33016526	33016526	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	N4BP2L2	NM_033111	exon7	c.G2148A	p.M716I	.	.	36	4	81	0	.	68
N4BP2L2	10443	bcgsc.ca	37	13	33018055	33018055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	N4BP2L2	NM_033111	exon7	c.T619C	p.F207L	.	.	85	4	185	0	.	68
NAALAD2	10003	bcgsc.ca	37	11	89896543	89896543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAALAD2	NM_005467	exon10	c.G1141A	p.G381R	.	.	48	4	73	0	.	92
NAB1	4664	bcgsc.ca	37	2	191524368	191524368	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAB1	NM_005966	exon4	c.G466A	p.G156S	.	.	46	4	51	0	.	226
NACA	4666	bcgsc.ca	37	12	57108176	57108176	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NACA	NM_001113203	exon7	c.A2334G	p.K778K	.	.	135	5	153	1	.	254
NAE1	8883	bcgsc.ca	37	16	66847482	66847482	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAE1	NM_003905	exon13	c.T1019A	p.I340K	.	.	67	4	102	0	.	69
NAF1	92345	bcgsc.ca	37	4	164061447	164061447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAF1	NM_138386	exon5	c.T806A	p.I269K	.	.	53	4	98	0	.	70
NALCN	259232	bcgsc.ca	37	13	102051434	102051434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NALCN	NM_052867	exon2	c.T44C	p.V15A	.	.	80	4	89	0	.	167
NANOS2	339345	bcgsc.ca	37	19	46417934	46417934	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NANOS2	NM_001029861	exon1	c.C18T	p.F6F	.	.	64	4	52	0	.	90
NASP	4678	bcgsc.ca	37	1	46073080	46073080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NASP	NM_002482	exon6	c.C497A	p.A166E	.	.	121	6	174	0	.	91
NAV1	89796	bcgsc.ca	37	1	201779164	201779164	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAV1	NM_020443	exon23	c.T4492C	p.L1498L	.	.	142	5	85	0	.	228
NAV2	89797	ucsc.edu;bcgsc.ca	37	11	20127077	20127077	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NAV2	NM_001244963	exon37	c.A6822G	p.R2274R	.	.	67	6	61	0	.	96
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	36229035	36229036	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NBEA	NM_015678	exon53	c.8016_8017insC	p.V2672fs	.	.	45	30	73	0	.	144
NBN	4683	bcgsc.ca	37	8	90982640	90982640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NBN	NM_002485	exon7	c.C848A	p.P283H	.	.	94	4	67	1	.	1395
NCAN	1463	bcgsc.ca	37	19	19359638	19359638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCAN	NM_004386	exon14	c.T3767C	p.I1256T	.	.	66	4	78	0	.	94
NCAPG2	54892	bcgsc.ca	37	7	158449116	158449116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCAPG2	NM_017760	exon19	c.G2224T	p.A742S	.	.	62	4	119	0	.	272
NCAPG	64151	bcgsc.ca	37	4	17835999	17835999	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCAPG	NM_022346	exon14	c.T1962C	p.I654I	.	.	87	4	117	0	.	153
NCAPH	23397	bcgsc.ca	37	2	97009936	97009936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCAPH	NM_015341	exon6	c.T689C	p.L230P	.	.	65	5	80	0	.	228
NCDN	23154	ucsc.edu;bcgsc.ca	37	1	36026742	36026742	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCDN	NM_001014839	exon4	c.A990G	p.K330K	.	.	40	4	52	1	.	155
NCOA1	8648	bcgsc.ca	37	2	24888726	24888726	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCOA1	NM_147223	exon4	c.A198G	p.K66K	.	.	93	4	113	1	.	228
NCOA2	10499	bcgsc.ca	37	8	71068830	71068830	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCOA2	NM_006540	exon11	c.G1770T	p.G590G	.	.	50	4	57	0	.	639
NCOR1	9611	bcgsc.ca	37	17	15975511	15975511	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NCOR1	NM_001190440	exon28	c.T3891C	p.S1297S	.	.	65	4	82	0	.	229
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11711	11711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	ENST00000361381	exon1	c.G952A	p.A318T	.	.	408	90	233	2	.	.
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12610	12610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	ENST00000361567	exon1	c.G274A	p.V92I	.	.	455	184	252	0	.	.
NDUFAF7	55471	bcgsc.ca	37	2	37473266	37473266	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_144736	exon8	c.C864T	p.R288R	.	.	89	4	115	2	.	.
NDUFB8	4714	bcgsc.ca	37	10	102286743	102286743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NDUFB8	NM_005004	exon3	c.T301C	p.W101R	.	.	44	4	38	0	.	90
NEB	4703	bcgsc.ca	37	2	152409209	152409209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEB	NM_001271208	exon128	c.A19813G	p.K6605E	.	.	167	6	183	0	.	145
NECAB2	54550	bcgsc.ca	37	16	84014643	84014643	+	Missense_Mutation	SNP	G	G	T	rs147394468		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NECAB2	NM_019065	exon5	c.G370T	p.V124L	.	.	62	4	69	0	G|1.000;T|0.000	70
NEDD4	4734	bcgsc.ca	37	15	56122738	56122738	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEDD4	NM_198400	exon21	c.T3615C	p.P1205P	.	.	69	5	95	0	.	723
NEDD4L	23327	bcgsc.ca	37	18	56008333	56008333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEDD4L	NM_001144967	exon14	c.G1189T	p.A397S	.	.	66	4	92	0	.	658
NEK11	79858	bcgsc.ca	37	3	130871343	130871343	+	Silent	SNP	T	T	C	rs6765954	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEK11	NM_024800	exon8	c.T759C	p.P253P	.	.	94	5	126	1	T|0.984;G|0.016	848
NEK1	4750	bcgsc.ca	37	4	170428914	170428914	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEK1	NM_001199397	exon22	c.A1863G	p.E621E	.	.	76	5	141	1	.	361
NEK5	341676	bcgsc.ca	37	13	52667235	52667235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEK5	NM_199289	exon13	c.A1163G	p.E388G	.	.	110	5	213	1	.	334
NEK9	91754	bcgsc.ca	37	14	75585579	75585579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEK9	NM_033116	exon5	c.A584G	p.Y195C	.	.	15	3	33	0	.	359
NELL1	4745	bcgsc.ca	37	11	20869242	20869242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NELL1	NM_006157	exon4	c.A449G	p.H150R	.	.	161	6	151	0	.	155
NELL2	4753	bcgsc.ca	37	12	45171037	45171037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NELL2	NM_001145107	exon7	c.G817T	p.D273Y	.	.	81	4	93	0	.	517
NEURL4	84461	bcgsc.ca	37	17	7221959	7221959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NEURL4	NM_032442	exon23	c.G3719A	p.C1240Y	.	.	42	4	51	0	.	46
NF1	4763	bcgsc.ca	37	17	29508746	29508746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NF1	NM_001128147	exon7	c.G673A	p.E225K	.	.	276	10	279	1	.	3353
NF1	4763	bcgsc.ca	37	17	29554254	29554254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NF1	NM_000267	exon19	c.A2270G	p.K757R	.	.	97	4	99	0	.	3353
NF1	4763	bcgsc.ca	37	17	29585456	29585456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NF1	NM_001042492	exon32	c.A4268G	p.E1423G	.	.	61	5	51	0	.	3353
NFAT5	10725	bcgsc.ca	37	16	69681198	69681198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFAT5	NM_001113178	exon4	c.G521A	p.R174Q	.	.	61	4	82	0	.	90
NFAT5	10725	bcgsc.ca	37	16	69681336	69681336	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFAT5	NM_001113178	exon4	c.G659A	p.R220Q	.	.	29	3	57	0	.	90
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24844908	24844908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFATC4	NM_001198967	exon8	c.T2105A	p.L702Q	.	.	53	17	96	0	.	92
NFIB	4781	ucsc.edu;bcgsc.ca	37	9	14179728	14179728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFIB	NM_001190738	exon3	c.C692A	p.P231Q	.	.	31	4	57	1	.	226
NFYC	4802	bcgsc.ca	37	1	41204588	41204588	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFYC	NM_001142587	exon2	c.C73A	p.R25R	.	.	78	4	112	1	.	289
NFYC	4802	bcgsc.ca	37	1	41213209	41213209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFYC	NM_001142587	exon3	c.G109T	p.D37Y	.	.	64	4	100	0	.	289
NFYC	4802	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	41215259	41215259	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NFYC	NM_001142587	exon4	c.A192G	p.E64E	.	.	56	13	84	1	.	289
NGLY1	55768	bcgsc.ca	37	3	25770721	25770721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NGLY1	NM_018297	exon10	c.T1514C	p.V505A	.	.	84	4	84	0	.	135
NHLRC3	387921	bcgsc.ca	37	13	39616383	39616383	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NHLRC3	NM_001012754	exon4	c.A527G	p.D176G	.	.	59	4	108	0	.	91
NHP2L1	4809	bcgsc.ca	37	22	42070951	42070951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NHP2L1	NM_001003796	exon3	c.A373G	p.R125G	.	.	69	4	87	0	.	226
NHS	4810	bcgsc.ca	37	X	17710487	17710487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NHS	NM_198270	exon3	c.A751G	p.R251G	.	.	86	5	103	0	.	197
NID1	4811	bcgsc.ca	37	1	236176738	236176738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NID1	NM_002508	exon11	c.T2377C	p.F793L	.	.	82	4	65	0	.	154
NID2	22795	ucsc.edu	37	14	52477750	52477750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NID2	NM_007361	exon18	c.A3566G	p.E1189G	.	.	26	4	33	0	.	158
NIM1	0	bcgsc.ca	37	5	43277264	43277264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_153361	exon3	c.T398C	p.I133T	.	.	124	6	95	0	.	.
NIN	51199	bcgsc.ca	37	14	51206031	51206031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NIN	NM_020921	exon26	c.G5623A	p.E1875K	.	.	72	5	150	0	.	229
NIPAL1	152519	bcgsc.ca	37	4	48038081	48038081	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NIPAL1	NM_207330	exon6	c.C1125T	p.A375A	.	.	75	4	112	0	.	68
NKAP	79576	bcgsc.ca	37	X	119059341	119059341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NKAP	NM_024528	exon9	c.G1090A	p.A364T	.	.	48	4	33	0	.	132
NKAP	79576	ucsc.edu	37	X	119077311	119077311	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	NKAP,NS,carcinoma,-1	NKAP	NM_024528	exon1	c.G258T	p.A86A	.	.	39	4	42	0	.	132
NKPD1	284353	bcgsc.ca	37	19	45662116	45662116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NKPD1	NM_198478	exon2	c.G334T	p.A112S	.	.	76	5	61	0	.	68
NKTR	4820	bcgsc.ca	37	3	42681047	42681047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NKTR	NM_005385	exon13	c.C3851T	p.T1284I	.	.	103	4	76	0	.	93
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173322666	173322666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon3	c.G278T	p.R93L	.	.	94	39	102	0	.	231
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173525610	173525610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLGN1	NM_014932	exon4	c.C634A	p.L212I	.	.	97	52	137	0	.	231
NLRP13	126204	ucsc.edu;bcgsc.ca	37	19	56423971	56423971	+	Silent	SNP	T	T	C	rs149489544	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	NLRP13,NS,carcinoma,0	NLRP13	NM_176810	exon5	c.A1212G	p.E404E	.	.	60	6	41	0	T|1.000;G|0.000	211
NLRP8	126205	bcgsc.ca	37	19	56485145	56485145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NLRP8	NM_176811	exon7	c.T2662C	p.W888R	.	.	59	4	37	0	.	361
NMUR2	56923	bcgsc.ca	37	5	151784110	151784110	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NMUR2	NM_020167	exon1	c.T565C	p.F189L	.	.	102	4	73	0	.	526
NOL8	55035	bcgsc.ca	37	9	95084007	95084007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NOL8	NM_017948	exon4	c.C224A	p.T75K	.	.	70	4	132	0	.	23
NONO	4841	ucsc.edu;bcgsc.ca	37	X	70514267	70514267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NONO	NM_001145408	exon6	c.T539C	p.I180T	.	.	41	4	53	0	.	231
NPAS3	64067	bcgsc.ca	37	14	34204478	34204478	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPAS3	NM_001164749	exon7	c.C792T	p.F264F	.	.	103	5	128	0	.	93
NPAT	4863	bcgsc.ca	37	11	108047073	108047073	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPAT	NM_002519	exon12	c.A1032G	p.S344S	.	.	87	4	134	0	.	117
NPAT	4863	bcgsc.ca	37	11	108047809	108047809	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPAT	NM_002519	exon11	c.T915C	p.I305I	.	.	49	4	73	0	.	117
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44555743	44555743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPC1L1	NM_013389	exon18	c.C3654A	p.I1218I	.	.	76	6	63	0	.	94
NPHP3	27031	bcgsc.ca	37	3	132432126	132432126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPHP3	NM_153240	exon6	c.A962T	p.Y321F	.	.	170	6	160	0	.	91
NPHS1	4868	bcgsc.ca	37	19	36334440	36334440	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NPHS1	NM_004646	exon17	c.T2268C	p.S756S	.	.	55	4	52	0	.	49
NR2C1	7181	bcgsc.ca	37	12	95456410	95456410	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NR2C1	NM_001032287	exon3	c.T159C	p.T53T	.	.	78	5	75	1	.	187
NR3C1	2908	bcgsc.ca	37	5	142661521	142661521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NR3C1	NM_001024094	exon9	c.T2270C	p.I757T	.	.	196	6	145	0	.	92
NR3C1	2908	broad.mit.edu	37	5	142661458	142661458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NR3C1	NM_001024094	exon9	c.A2333G	p.K778R	.	.	155	6	113	0	.	92
NR5A1	2516	bcgsc.ca	37	9	127265394	127265394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NR5A1	NM_004959	exon3	c.T208C	p.F70L	.	.	19	4	27	0	.	186
NRAP	4892	bcgsc.ca	37	10	115402777	115402777	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NRAP	NM_001261463	exon12	c.G1131T	p.L377L	.	.	111	6	125	0	.	522
NRIP2	83714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2944113	2944113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NRIP2	NM_031474	exon1	c.C37T	p.P13S	.	.	64	14	88	0	.	187
NRXN1	9378	bcgsc.ca	37	2	51254883	51254883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NRXN1	NM_004801	exon2	c.C529T	p.R177W	.	.	52	4	76	0	.	92
NSMCE4A	54780	bcgsc.ca	37	10	123733575	123733575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NSMCE4A	NM_017615	exon2	c.A314G	p.N105S	.	.	181	5	176	0	.	90
NSUN6	221078	bcgsc.ca	37	10	18937450	18937450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NSUN6	NM_182543	exon2	c.T200C	p.V67A	.	.	122	5	152	0	.	92
NT5C3A	0	bcgsc.ca	37	7	33063706	33063706	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001002010	exon3	c.T267C	p.F89F	.	.	98	4	73	0	.	.
NTHL1	4913	bcgsc.ca	37	16	2093685	2093685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NTHL1	NM_002528	exon4	c.C592A	p.Q198K	.	.	61	5	53	0	.	227
NUAK2	81788	bcgsc.ca	37	1	205275350	205275350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUAK2	NM_030952	exon5	c.A656G	p.E219G	.	.	75	4	50	1	.	391
NUGGC	389643	bcgsc.ca	37	8	27927132	27927132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001010906	exon4	c.C186A	p.S62R	.	.	53	4	86	0	.	.
NUP188	23511	ucsc.edu;bcgsc.ca	37	9	131765129	131765129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP188	NM_015354	exon37	c.C4171T	p.P1391S	.	.	35	4	45	0	.	207
NUP205	23165	ucsc.edu	37	7	135310064	135310064	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP205	NM_015135	exon32	c.T4632C	p.P1544P	.	.	43	4	87	1	.	207
NUP214	8021	ucsc.edu;bcgsc.ca	37	9	134004676	134004676	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP214	NM_005085	exon4	c.A404T	p.Q135L	.	.	39	4	86	0	.	1131
NUP50	10762	bcgsc.ca	37	22	45580346	45580346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP50	NM_007172	exon8	c.T1217C	p.L406P	.	.	200	6	270	0	.	68
NUP88	4927	bcgsc.ca	37	17	5292239	5292239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP88	NM_002532	exon11	c.G1526T	p.R509L	.	.	54	4	59	0	.	204
NUP88	4927	bcgsc.ca	37	17	5307547	5307547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP88	NM_002532	exon7	c.C1064A	p.S355Y	.	.	71	4	133	0	.	204
NUP88	4927	ucsc.edu;bcgsc.ca	37	17	5292266	5292266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	NUP88	NM_002532	exon11	c.C1499A	p.P500Q	.	.	39	4	58	1	.	204
OASL	8638	bcgsc.ca	37	12	121471388	121471388	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OASL	NM_198213	exon2	c.G357A	p.L119L	.	.	58	4	56	0	.	69
OBSCN	84033	bcgsc.ca	37	1	228496959	228496959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OBSCN	NM_001271223	exon59	c.T15770C	p.V5257A	.	.	73	4	50	0	.	403
ODAM	54959	bcgsc.ca	37	4	71068505	71068505	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ODAM	NM_017855	exon9	c.A681G	p.K227K	.	.	84	4	188	0	.	134
OFD1	8481	bcgsc.ca	37	X	13785392	13785392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OFD1	NM_003611	exon20	c.T2746A	p.Y916N	.	.	211	8	237	1	.	108
OGFOD1	55239	bcgsc.ca	37	16	56504522	56504522	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OGFOD1	NM_018233	exon10	c.G1104A	p.L368L	.	.	66	4	93	0	.	69
OGFOD1	55239	bcgsc.ca	37	16	56504676	56504676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OGFOD1	NM_018233	exon10	c.G1258A	p.E420K	.	.	104	5	167	0	.	69
OLAH	55301	bcgsc.ca	37	10	15115214	15115214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OLAH	NM_018324	exon9	c.A943G	p.I315V	.	.	69	4	101	0	.	68
OLFML2A	169611	bcgsc.ca	37	9	127549478	127549478	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OLFML2A	NM_182487	exon2	c.G315A	p.K105K	.	.	23	4	40	0	.	68
OMD	4958	bcgsc.ca	37	9	95179782	95179782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OMD	NM_005014	exon2	c.G59T	p.C20F	.	.	72	4	159	1	.	206
OPTN	10133	bcgsc.ca	37	10	13167470	13167470	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OPTN	NM_001008212	exon10	c.A1051G	p.K351E	.	.	106	5	133	0	.	70
OPTN	10133	bcgsc.ca	37	10	13174126	13174126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OPTN	NM_001008212	exon13	c.G1461T	p.E487D	.	.	72	4	73	0	.	70
OR10J5	127385	bcgsc.ca	37	1	159505172	159505172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR10J5	NM_001004469	exon1	c.C626T	p.P209L	.	.	96	5	72	0	.	71
OR10K2	391107	bcgsc.ca	37	1	158390566	158390566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR10K2	NM_001004476	exon1	c.T91C	p.F31L	.	.	193	7	145	1	.	69
OR1A1	8383	bcgsc.ca	37	17	3119068	3119068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR1A1	NM_014565	exon1	c.G154T	p.D52Y	.	.	130	6	143	0	.	70
OR1K1	392392	ucsc.edu	37	9	125562916	125562916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR1K1	NM_080859	exon1	c.C515T	p.S172F	.	.	54	7	82	0	.	69
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99474046	99474046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2AE1	NM_001005276	exon1	c.T611C	p.I204T	.	.	51	15	59	0	.	90
OR2B3	442184	bcgsc.ca	37	6	29054497	29054497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2B3	NM_001005226	exon1	c.T529C	p.F177L	.	.	77	4	54	0	.	1
OR2T11	127077	bcgsc.ca	37	1	248790207	248790207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2T11	NM_001001964	exon1	c.G223A	p.V75I	.	.	86	5	76	0	.	69
OR2T4	127074	bcgsc.ca	37	1	248524908	248524908	+	Missense_Mutation	SNP	G	G	A	rs140989725		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR2T4	NM_001004696	exon1	c.G26A	p.S9N	.	.	388	16	321	1	G|1.000;A|0.000	68
OR4C11	219429	bcgsc.ca	37	11	55371000	55371000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR4C11	NM_001004700	exon1	c.A850G	p.I284V	.	.	85	4	55	0	.	69
OR4K5	79317	bcgsc.ca	37	14	20388990	20388990	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR4K5	NM_001005483	exon1	c.T225G	p.S75S	.	.	89	4	193	0	.	70
OR51A7	119687	bcgsc.ca	37	11	4929262	4929262	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR51A7	NM_001004749	exon1	c.G663T	p.L221F	.	.	147	5	140	0	.	70
OR52I2	143502	bcgsc.ca	37	11	4608425	4608425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR52I2	NM_001005170	exon1	c.T383A	p.F128Y	.	.	176	6	177	0	.	91
OR52L1	338751	bcgsc.ca	37	11	6008055	6008055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR52L1	NM_001005173	exon1	c.C106A	p.P36T	.	.	79	4	71	1	.	91
OR56B1	387748	bcgsc.ca	37	11	5758102	5758102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR56B1	NM_001005180	exon1	c.T356C	p.M119T	.	.	186	6	141	1	.	69
OR5AC2	81050	bcgsc.ca	37	3	97806104	97806104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR5AC2	NM_054106	exon1	c.T88C	p.F30L	.	.	90	4	136	0	.	69
OR5AR1	219493	bcgsc.ca	37	11	56431941	56431941	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR5AR1	NM_001004730	exon1	c.G780T	p.L260L	.	.	117	7	94	0	.	68
OR5F1	338674	bcgsc.ca	37	11	55762013	55762013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR5F1	NM_003697	exon1	c.T89C	p.F30S	.	.	144	5	92	0	.	70
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310110	124310110	+	Missense_Mutation	SNP	C	C	T	rs147220624	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.G872A	p.S291N	.	.	35	16	66	0	C|0.999;A|0.001	69
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124310343	124310343	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OR8B8	NM_012378	exon1	c.C639A	p.T213T	.	.	40	18	86	0	.	69
OS9	10956	bcgsc.ca	37	12	58110523	58110523	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OS9	NM_001261420	exon9	c.C1044A	p.P348P	.	.	57	4	34	0	.	493
OSBPL10	114884	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	31705616	31705616	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon11	c.C2205T	p.R735R	.	.	63	13	64	0	.	69
OSBPL10	114884	ucsc.edu;bcgsc.ca	37	3	31871717	31871717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL10	NM_017784	exon4	c.C544T	p.P182S	.	.	36	4	46	0	.	69
OSBPL3	26031	bcgsc.ca	37	7	24901287	24901287	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL3	NM_145321	exon10	c.A972G	p.E324E	.	.	130	5	111	0	.	204
OSBPL3	26031	bcgsc.ca	37	7	24902878	24902878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OSBPL3	NM_145321	exon9	c.A811G	p.R271G	.	.	115	5	106	0	.	204
OTC	5009	bcgsc.ca	37	X	38260564	38260564	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OTC	NM_000531	exon5	c.A423G	p.R141R	.	.	87	7	80	5	.	172
OTOGL	283310	bcgsc.ca	37	12	80746126	80746126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_173591	exon44	c.T5290C	p.W1764R	.	.	169	6	142	0	.	.
OXCT1	5019	bcgsc.ca	37	5	41870455	41870455	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OXCT1	NM_000436	exon1	c.G6A	p.A2A	.	.	55	4	58	0	.	133
OXR1	55074	bcgsc.ca	37	8	107670290	107670290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	OXR1	NM_181354	exon1	c.G76T	p.G26W	.	.	23	4	36	0	.	68
P2RX7	5027	bcgsc.ca	37	12	121603871	121603871	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	P2RX7	NM_002562	exon7	c.C625T	p.L209L	.	.	68	4	73	0	.	268
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131552900	131552900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	P4HA2	NM_001017974	exon4	c.C321A	p.D107E	.	.	43	4	30	0	.	68
PADI1	29943	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17563890	17563890	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI1	NM_013358	exon12	c.G1395A	p.S465S	.	.	49	33	88	1	.	68
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17609432	17609432	+	Missense_Mutation	SNP	G	G	A	rs35624745	bycluster;byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI3	NM_016233	exon16	c.G1853A	p.R618Q	.	.	36	14	55	0	G|0.967;A|0.033	132
PADI6	353238	ucsc.edu;bcgsc.ca	37	1	17727872	17727872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PADI6	NM_207421	exon17	c.T2023C	p.C675R	.	.	45	4	58	0	.	113
PAGE4	9506	bcgsc.ca	37	X	49597209	49597209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAGE4	NM_007003	exon4	c.A248G	p.E83G	.	.	155	5	146	0	.	108
PAH	5053	bcgsc.ca	37	12	103240694	103240694	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAH	NM_000277	exon9	c.A948G	p.E316E	.	.	76	4	90	0	.	72
PAK1	5058	bcgsc.ca	37	11	77047318	77047318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAK1	NM_001128620	exon13	c.G1226A	p.G409E	.	.	137	7	67	0	.	957
PALB2	79728	bcgsc.ca	37	16	23614881	23614881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PALB2	NM_024675	exon13	c.G3460T	p.V1154F	.	.	98	5	106	1	.	1351
PAMR1	25891	bcgsc.ca	37	11	35463030	35463030	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAMR1	NM_015430	exon8	c.A1083G	p.K361K	.	.	136	5	87	0	.	70
PAMR1	25891	bcgsc.ca	37	11	35492158	35492158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAMR1	NM_001001991	exon5	c.G703A	p.E235K	.	.	62	4	58	0	.	70
PAPD5	64282	bcgsc.ca	37	16	50257182	50257182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAPD5	NM_001040284	exon8	c.A1220G	p.K407R	.	.	110	6	147	0	.	205
PAPPA2	60676	bcgsc.ca	37	1	176664894	176664894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAPPA2	NM_020318	exon7	c.G2645T	p.G882V	.	.	69	6	50	0	.	548
PAQR3	152559	bcgsc.ca	37	4	79845045	79845045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAQR3	NM_001040202	exon5	c.C759A	p.F253L	.	.	96	4	208	0	.	46
PAQR8	85315	bcgsc.ca	37	6	52268902	52268902	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAQR8	NM_133367	exon2	c.G891T	p.L297L	.	.	69	4	40	0	.	68
PARD3	56288	bcgsc.ca	37	10	34558647	34558647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PARD3	NM_019619	exon22	c.G3366T	p.M1122I	.	.	71	4	54	0	.	92
PARP9	83666	bcgsc.ca	37	3	122247312	122247312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PARP9	NM_031458	exon11	c.A2464G	p.T822A	.	.	77	4	109	0	.	525
PASD1	139135	bcgsc.ca	37	X	150791519	150791519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PASD1	NM_173493	exon7	c.A529G	p.R177G	.	.	124	6	108	0	.	133
PATL2	197135	bcgsc.ca	37	15	44967716	44967716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145112	exon3	c.C190A	p.P64T	.	.	94	4	66	0	.	.
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114002034	114002034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PAX8	NM_013952	exon4	c.A359G	p.D120G	.	.	30	4	24	0	.	684
PAXBP1	94104	bcgsc.ca	37	21	34134574	34134574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_013329	exon4	c.C704T	p.A235V	.	.	39	4	55	0	.	.
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	164768969	164768969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PBX1	NM_001204963	exon4	c.C544T	p.L182F	.	.	83	16	58	0	.	659
PCDH12	51294	bcgsc.ca	37	5	141337197	141337197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCDH12	NM_016580	exon1	c.G220T	p.A74S	.	.	59	5	46	1	.	93
PCDH9	5101	bcgsc.ca	37	13	67799639	67799639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCDH9	NM_203487	exon2	c.C2934A	p.D978E	.	.	59	4	97	0	.	96
PCGF6	84108	bcgsc.ca	37	10	105104858	105104858	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCGF6	NM_001011663	exon6	c.A705G	p.G235G	.	.	101	4	95	0	.	226
PCMT1	5110	bcgsc.ca	37	6	150092335	150092335	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCMT1	NM_005389	exon2	c.G267T	p.V89V	.	.	33	4	70	0	.	91
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233397906	233397906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCNXL2	NM_014801	exon3	c.A365G	p.N122S	.	.	144	19	108	0	.	91
PCSK4	54760	bcgsc.ca	37	19	1483390	1483390	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PCSK4	NM_017573	exon12	c.G1464T	p.S488S	.	.	10	3	28	0	.	90
PDCD11	22984	bcgsc.ca	37	10	105191956	105191956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDCD11	NM_014976	exon22	c.C3439A	p.Q1147K	.	.	64	4	82	0	.	275
PDCD11	22984	bcgsc.ca	37	10	105198442	105198442	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDCD11	NM_014976	exon27	c.3903-1G>T	.	.	.	73	4	88	0	.	275
PDCL	5082	ucsc.edu;bcgsc.ca	37	9	125582879	125582879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDCL	NM_005388	exon4	c.C391A	p.Q131K	.	.	28	4	33	0	.	90
PDE10A	10846	bcgsc.ca	37	6	165808747	165808747	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE10A	NM_001130690	exon15	c.C1428A	p.H476Q	.	.	46	4	101	0	.	519
PDE1A	5136	ucsc.edu;bcgsc.ca	37	2	183053724	183053724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE1A	NM_001258312	exon12	c.G1249A	p.V417M	.	.	43	4	37	0	.	93
PDE4A	5141	bcgsc.ca	37	19	10561512	10561512	+	Silent	SNP	G	G	T	rs199860326	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE4A	NM_001111307	exon6	c.G678T	p.T226T	.	.	55	4	64	0	.	523
PDE6B	5158	bcgsc.ca	37	4	647704	647704	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE6B	NM_001145291	exon4	c.A775G	p.K259E	.	.	32	4	46	0	.	90
PDE6B	5158	bcgsc.ca	37	4	647733	647733	+	Silent	SNP	C	C	T	rs147372374		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE6B	NM_001145291	exon4	c.C804T	p.L268L	.	.	30	4	39	0	C|1.000;T|0.000	90
PDE6B	5158	bcgsc.ca	37	4	663850	663850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDE6B	NM_000283	exon22	c.G2519T	p.C840F	.	.	70	4	63	0	.	90
PDGFRB	5159	bcgsc.ca	37	5	149513451	149513451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDGFRB	NM_002609	exon5	c.G752T	p.R251L	.	.	63	4	46	0	.	1499
PDK1	5163	bcgsc.ca	37	2	173433508	173433508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDK1	NM_002610	exon7	c.C809A	p.P270Q	.	.	236	8	215	2	.	978
PDK2	5164	bcgsc.ca	37	17	48184232	48184232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDK2	NM_002611	exon5	c.T592C	p.S198P	.	.	112	5	50	0	.	803
PDLIM3	27295	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186425735	186425735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDLIM3	NM_014476	exon7	c.C799G	p.R267G	.	.	16	16	40	0	.	92
PDPR	55066	bcgsc.ca	37	16	70190385	70190385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDPR	NM_017990	exon19	c.A2243G	p.D748G	.	.	74	4	107	1	.	135
PDZD8	118987	bcgsc.ca	37	10	119043067	119043067	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PDZD8	NM_173791	exon5	c.A3177G	p.R1059R	.	.	162	6	171	0	.	90
PEG3	5178	bcgsc.ca	37	19	57325744	57325744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PEG3	NM_001146184	exon9	c.G4066A	p.E1356K	.	.	73	4	70	0	.	164
PEX11A	8800	bcgsc.ca	37	15	90226810	90226810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PEX11A	NM_003847	exon3	c.T542C	p.L181P	.	.	74	4	115	1	.	90
PEX14	5195	bcgsc.ca	37	1	10689752	10689752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PEX14	NM_004565	exon9	c.A842G	p.H281R	.	.	62	4	100	0	.	90
PFKP	5214	bcgsc.ca	37	10	3149484	3149484	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PFKP	NM_002627	exon8	c.T853C	p.S285P	.	.	74	6	75	0	.	253
PGM2	55276	bcgsc.ca	37	4	37841516	37841516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PGM2	NM_018290	exon5	c.C488A	p.T163N	.	.	85	4	111	0	.	91
PHACTR2	9749	bcgsc.ca	37	6	144104380	144104380	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHACTR2	NM_001100164	exon10	c.A1670G	p.E557G	.	.	72	4	152	0	.	92
PHC1	1911	bcgsc.ca	37	12	9091927	9091927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHC1	NM_004426	exon15	c.C2887A	p.R963S	.	.	222	7	338	0	.	154
PHF10	55274	bcgsc.ca	37	6	170115920	170115920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHF10	NM_018288	exon6	c.G577T	p.A193S	.	.	93	5	225	1	.	226
PHF3	23469	ucsc.edu;bcgsc.ca	37	6	64390032	64390032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHF3	NM_015153	exon2	c.C376A	p.P126T	.	.	41	4	72	1	.	229
PHF7	51533	bcgsc.ca	37	3	52457169	52457169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHF7	NM_016483	exon11	c.C982T	p.H328Y	.	.	189	6	195	0	.	153
PHIP	55023	bcgsc.ca	37	6	79679600	79679600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHIP	NM_017934	exon27	c.G3157T	p.V1053F	.	.	67	4	117	0	.	579
PHKG1	5260	bcgsc.ca	37	7	56150986	56150986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHKG1	NM_001258459	exon7	c.G628A	p.G210R	.	.	63	5	59	0	.	424
PHLDB3	653583	bcgsc.ca	37	19	43983686	43983686	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHLDB3	NM_198850	exon14	c.G1545T	p.L515L	.	.	82	5	69	1	.	68
PHRF1	57661	ucsc.edu	37	11	608723	608723	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHRF1	NM_020901	exon14	c.C3264T	p.S1088S	.	.	21	2	35	0	.	22
PHTF2	57157	bcgsc.ca	37	7	77530068	77530068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHTF2	NM_001127359	exon4	c.C155A	p.P52Q	.	.	56	4	51	0	.	23
PHTF2	57157	bcgsc.ca	37	7	77552072	77552072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHTF2	NM_001127359	exon9	c.T994A	p.Y332N	.	.	68	4	64	0	.	23
PHYHIPL	84457	bcgsc.ca	37	10	61004933	61004933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PHYHIPL	NM_032439	exon5	c.C713A	p.T238N	.	.	54	4	57	0	.	90
PI15	51050	bcgsc.ca	37	8	75761457	75761457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PI15	NM_015886	exon6	c.T746C	p.V249A	.	.	92	4	104	0	.	515
PIAS1	8554	bcgsc.ca	37	15	68468846	68468846	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIAS1	NM_016166	exon11	c.G1335T	p.A445A	.	.	63	4	71	0	.	637
PIAS1	8554	bcgsc.ca	37	15	68468888	68468888	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIAS1	NM_016166	exon11	c.G1377T	p.V459V	.	.	77	4	84	1	.	637
PICALM	8301	bcgsc.ca	37	11	85707874	85707874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PICALM	NM_007166	exon12	c.G1253T	p.W418L	.	.	45	4	55	0	.	659
PIEZO2	63895	bcgsc.ca	37	18	10689726	10689726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_022068	exon45	c.T7085C	p.L2362P	.	.	45	4	86	0	.	.
PIGA	5277	bcgsc.ca	37	X	15344150	15344150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIGA	NM_002641	exon3	c.G734T	p.G245V	.	.	104	5	92	0	.	226
PIGG	54872	bcgsc.ca	37	4	514963	514963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIGG	NM_017733	exon7	c.G1233T	p.Q411H	.	.	57	4	83	0	.	92
PIK3C2A	5286	bcgsc.ca	37	11	17156383	17156383	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIK3C2A	NM_002645	exon10	c.A2091G	p.S697S	.	.	91	4	65	0	.	1310
PIK3C2B	5287	bcgsc.ca	37	1	204401463	204401463	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIK3C2B	NM_002646	exon28	c.G4020T	p.Q1340H	.	.	101	5	57	0	.	1310
PIK3C2G	5288	bcgsc.ca	37	12	18544171	18544171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIK3C2G	NM_004570	exon14	c.A1988G	p.K663R	.	.	70	4	118	0	.	1312
PIK3CG	5294	bcgsc.ca	37	7	106509972	106509972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIK3CG	NM_002649	exon2	c.G1966A	p.V656I	.	.	84	4	127	0	.	1316
PION	54103	bcgsc.ca	37	7	77026694	77026694	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PION	NM_017439	exon4	c.T282C	p.S94S	.	.	231	7	229	1	.	514
PIP5K1P1	206426	ucsc.edu	37	6	7987882	7987882	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	58	4	34	1	.	.
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67262555	67262555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PITPNM1	NM_004910	exon17	c.T2624C	p.L875P	.	.	23	4	38	0	.	227
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94331044	94331044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon11	c.T1343C	p.I448T	.	.	45	4	60	0	.	91
PIWIL4	143689	ucsc.edu;bcgsc.ca	37	11	94351131	94351131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PIWIL4	NM_152431	exon17	c.A2026G	p.K676E	.	.	31	4	78	0	.	91
PKD1L1	168507	bcgsc.ca	37	7	47894855	47894855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L1	NM_138295	exon29	c.A4599G	p.G1533G	.	.	62	4	68	0	.	145
PKD1L2	114780	ucsc.edu;bcgsc.ca	37	16	81241133	81241133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L2	NM_001076780	exon5	c.A868T	p.T290S	.	.	44	4	59	0	.	92
PKD1L3	342372	bcgsc.ca	37	16	71976874	71976874	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L3	.	.	.	.	.	.	92	5	178	0	.	68
PKD1L3	342372	bcgsc.ca	37	16	72020155	72020155	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKD1L3	.	.	.	.	.	.	87	4	175	0	.	68
PKHD1	5314	bcgsc.ca	37	6	51483917	51483917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1	NM_138694	exon67	c.C12187T	p.H4063Y	.	.	82	4	50	0	.	603
PKHD1	5314	bcgsc.ca	37	6	51712616	51712616	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1	NM_170724	exon50	c.T8064C	p.C2688C	.	.	59	4	30	0	.	603
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51824795	51824795	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1	NM_170724	exon36	c.A5781T	p.R1927S	.	.	122	13	60	0	.	603
PKHD1L1	93035	bcgsc.ca	37	8	110478967	110478967	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKHD1L1	NM_177531	exon50	c.T8574A	p.L2858L	.	.	78	4	80	0	.	145
PKN2	5586	bcgsc.ca	37	1	89237520	89237520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PKN2	NM_006256	exon6	c.C943A	p.Q315K	.	.	89	6	92	1	.	522
PLA2G6	8398	ucsc.edu;bcgsc.ca	37	22	38508273	38508273	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLA2G6	NM_003560	exon17	c.G2316A	p.E772E	.	.	25	4	28	0	.	91
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8626827	8626827	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLCB1	NM_015192	exon5	c.A463A	p.S155S	.	.	121	16	137	0	.	297
PLCXD3	345557	bcgsc.ca	37	5	41382533	41382533	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLCXD3	NM_001005473	exon2	c.C207T	p.A69A	.	.	30	3	37	0	.	229
PLD1	5337	bcgsc.ca	37	3	171405344	171405344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLD1	NM_002662	exon15	c.A1570G	p.R524G	.	.	178	5	227	2	.	660
PLD5	200150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	242451667	242451667	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLD5	NM_152666	exon4	c.T492A	p.C164X	.	.	561	61	424	0	.	96
PLEKHA5	54477	bcgsc.ca	37	12	19406955	19406955	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLEKHA5	NM_001143821	exon4	c.A309G	p.E103E	.	.	110	5	213	1	.	227
PLG	5340	ucsc.edu	37	6	161139782	161139782	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLG	NM_000301	exon9	c.T1008C	p.H336H	.	.	60	1	91	0	.	94
PLXNA1	5361	ucsc.edu;bcgsc.ca	37	3	126737196	126737196	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PLXNA1	NM_032242	exon19	c.G3720T	p.L1240L	.	.	53	4	63	0	.	93
PM20D2	135293	bcgsc.ca	37	6	89871830	89871830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PM20D2	NM_001010853	exon7	c.T1159C	p.S387P	.	.	79	4	125	1	.	68
PNPLA2	57104	bcgsc.ca	37	11	822533	822533	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PNPLA2	NM_020376	exon5	c.C623T	p.T208I	.	.	73	5	61	0	.	90
PNPLA4	8228	bcgsc.ca	37	X	7868787	7868787	+	Missense_Mutation	SNP	C	C	A	rs139372734		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PNPLA4	NM_004650	exon7	c.G702T	p.L234F	.	.	133	6	159	0	C|1.000;A|0.000	130
POC5	134359	bcgsc.ca	37	5	74988222	74988222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POC5	NM_001099271	exon7	c.A794G	p.D265G	.	.	154	6	74	0	.	45
POLA1	5422	bcgsc.ca	37	X	24759557	24759557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLA1	NM_016937	exon21	c.T2264C	p.I755T	.	.	62	4	54	0	.	229
POLK	51426	bcgsc.ca	37	5	74892629	74892629	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLK	NM_016218	exon13	c.T2111A	p.V704E	.	.	62	4	45	0	.	229
POLQ	10721	bcgsc.ca	37	3	121206183	121206183	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLQ	NM_199420	exon16	c.T5595A	p.S1865S	.	.	72	4	89	0	.	664
POLR2A	5430	bcgsc.ca	37	17	7411683	7411683	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLR2A	NM_000937	exon20	c.G3354T	p.T1118T	.	.	81	4	127	0	.	91
POLR3A	11128	bcgsc.ca	37	10	79743702	79743702	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLR3A	NM_007055	exon26	c.A3405G	p.E1135E	.	.	76	4	82	0	.	90
POLR3B	55703	bcgsc.ca	37	12	106830896	106830896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLR3B	NM_018082	exon17	c.G1843A	p.A615T	.	.	65	4	68	0	.	91
POLRMT	5442	bcgsc.ca	37	19	625207	625207	+	Silent	SNP	G	G	A	rs41540112	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLRMT	NM_005035	exon4	c.C870T	p.A290A	.	.	61	4	107	0	G|0.979;A|0.021	92
POLRMT	5442	ucsc.edu	37	19	617810	617810	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	POLRMT	NM_005035	exon18	c.G3462A	p.W1154X	.	.	43	4	34	0	.	92
PPARG	5468	bcgsc.ca	37	3	12421346	12421346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPARG	NM_015869	exon2	c.C226T	p.P76S	.	.	84	4	107	0	.	1043
PPARGC1B	133522	ucsc.edu;bcgsc.ca	37	5	149200062	149200062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPARGC1B	NM_133263	exon2	c.G145A	p.A49T	.	.	25	4	27	0	.	186
PPFIA2	8499	bcgsc.ca	37	12	81688633	81688633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPFIA2	NM_001220476	exon23	c.C2906A	p.A969D	.	.	56	4	72	0	.	231
PPIL3	53938	bcgsc.ca	37	2	201750480	201750480	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPIL3	NM_130906	exon3	c.A19T	p.T7S	.	.	110	4	109	0	.	90
PPP1R12B	4660	bcgsc.ca	37	1	202318206	202318206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP1R12B	NM_002481	exon1	c.A227G	p.K76R	.	.	48	4	41	0	.	229
PPP1R13B	23368	ucsc.edu;bcgsc.ca	37	14	104204199	104204199	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP1R13B	NM_015316	exon16	c.2865-2A>G	.	.	.	16	4	36	0	.	227
PPP1R21	129285	bcgsc.ca	37	2	48698280	48698280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_152994	exon10	c.A952G	p.M318V	.	.	166	5	212	0	.	.
PPP2R2A	5520	bcgsc.ca	37	8	26227708	26227708	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP2R2A	NM_001177591	exon10	c.C1153A	p.R385R	.	.	44	4	122	0	.	659
PPP3CA	5530	ucsc.edu;bcgsc.ca	37	4	102030193	102030193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP3CA	NM_000944	exon3	c.T302C	p.L101P	.	.	39	4	45	0	.	227
PPP4R4	57718	bcgsc.ca	37	14	94732196	94732196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPP4R4	NM_058237	exon22	c.A2350G	p.K784E	.	.	107	5	187	2	.	94
PPTC7	160760	bcgsc.ca	37	12	110976036	110976036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PPTC7	NM_139283	exon5	c.G769T	p.A257S	.	.	86	4	75	0	.	90
PRAM1	84106	broad.mit.edu	37	19	8564384	8564384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_032152	exon2	c.T308A	p.L103H	.	.	20	7	22	0	.	.
PRC1	9055	bcgsc.ca	37	15	91513635	91513635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRC1	NM_199413	exon12	c.A1571G	p.K524R	.	.	53	4	47	0	.	92
PRDM10	56980	ucsc.edu;bcgsc.ca	37	11	129793150	129793150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRDM10	NM_020228	exon14	c.A2039G	p.Q680R	.	.	35	4	39	0	.	91
PRG4	10216	bcgsc.ca	37	1	186275544	186275544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRG4	NM_005807	exon7	c.C693A	p.F231L	.	.	144	5	93	1	.	91
PRKAB1	5564	bcgsc.ca	37	12	120112186	120112186	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRKAB1	NM_006253	exon4	c.T459C	p.I153I	.	.	66	5	77	1	.	846
PRKG2	5593	bcgsc.ca	37	4	82096101	82096101	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRKG2	NM_006259	exon2	c.C474T	p.L158L	.	.	51	4	147	0	.	524
PRL	5617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	22294684	22294684	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRL	NM_000948	exon2	c.T158A	p.L53Q	.	.	270	56	142	0	.	90
PRLR	5618	bcgsc.ca	37	5	35066193	35066193	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRLR	NM_000949	exon10	c.T867C	p.S289S	.	.	69	4	51	0	.	93
PRMT2	3275	bcgsc.ca	37	21	48071864	48071864	+	Silent	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRMT2	NM_001242865	exon7	c.C801G	p.L267L	.	.	70	4	142	0	.	91
PROCR	10544	bcgsc.ca	37	20	33764248	33764248	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PROCR	NM_006404	exon3	c.A600G	p.K200K	.	.	55	4	52	0	.	226
PROK1	84432	bcgsc.ca	37	1	110993903	110993903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PROK1	NM_032414	exon1	c.T65C	p.I22T	.	.	95	5	79	0	.	90
PROM1	8842	ucsc.edu;bcgsc.ca	37	4	16002203	16002203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PROM1	NM_006017	exon13	c.G1494T	p.M498I	.	.	44	4	55	0	.	207
PRPF39	55015	bcgsc.ca	37	14	45579888	45579888	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRPF39	NM_017922	exon10	c.T1440C	p.D480D	.	.	83	5	141	0	.	70
PRPF40B	25766	bcgsc.ca	37	12	50029751	50029751	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRPF40B	NM_001031698	exon15	c.C1401T	p.S467S	.	.	50	4	63	1	.	95
PRPF4	9128	bcgsc.ca	37	9	116038925	116038925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRPF4	NM_004697	exon2	c.T128C	p.L43P	.	.	63	4	136	0	.	93
PRPF8	10594	bcgsc.ca	37	17	1565318	1565318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRPF8	NM_006445	exon25	c.G3904A	p.G1302R	.	.	56	4	82	0	.	525
PRR12	57479	bcgsc.ca	37	19	50102673	50102673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRR12	NM_020719	exon5	c.C3823A	p.P1275T	.	.	69	5	55	0	.	70
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120022233	120022233	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRR16	NM_016644	exon3	c.C675T	p.G225G	.	.	118	28	100	0	.	71
PRSS53	339105	bcgsc.ca	37	16	31097394	31097394	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRSS53	NM_001039503	exon6	c.G774T	p.L258L	.	.	20	4	31	0	.	68
PRSS54	221191	bcgsc.ca	37	16	58319998	58319998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRSS54	NM_001080492	exon5	c.A365G	p.D122G	.	.	186	7	235	0	.	70
PRUNE2	158471	bcgsc.ca	37	9	79318791	79318791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PRUNE2	NM_015225	exon9	c.G7738T	p.G2580C	.	.	101	4	198	0	.	157
PSG6	5675	bcgsc.ca	37	19	43414967	43414967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PSG6	NM_001031850	exon3	c.C471T	p.P157P	.	.	73	4	82	0	.	92
PSMA8	143471	bcgsc.ca	37	18	23772329	23772329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PSMA8	NM_144662	exon7	c.A725G	p.K242R	.	.	144	5	138	0	.	91
PSMD1	5707	bcgsc.ca	37	2	232028383	232028383	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PSMD1	NM_002807	exon21	c.C2423A	p.P808Q	.	.	58	4	77	0	.	92
PTCD2	79810	bcgsc.ca	37	5	71638789	71638789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTCD2	NM_024754	exon8	c.A754G	p.N252D	.	.	58	4	30	0	.	90
PTCH2	8643	bcgsc.ca	37	1	45294710	45294710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTCH2	NM_001166292	exon11	c.G1408A	p.D470N	.	.	55	6	79	0	.	851
PTGS1	5742	bcgsc.ca	37	9	125141124	125141124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTGS1	NM_000962	exon5	c.C423A	p.F141L	.	.	124	5	195	0	.	228
PTN	5764	bcgsc.ca	37	7	136939693	136939693	+	Missense_Mutation	SNP	G	G	T	rs200423495	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTN	NM_002825	exon2	c.C28A	p.R10S	.	.	51	4	40	0	G|1.000;A|0.000	516
PTP4A2	8073	bcgsc.ca	37	1	32374496	32374496	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTP4A2	NM_080391	exon6	c.G461A	p.R154Q	.	.	87	5	104	0	.	650
PTPN13	5783	bcgsc.ca	37	4	87693995	87693995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN13	NM_080685	exon32	c.G5248T	p.A1750S	.	.	26	3	53	1	.	230
PTPN14	5784	broad.mit.edu;bcgsc.ca	37	1	214531354	214531354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN14	NM_005401	exon19	c.C3475A	p.Q1159K	.	.	144	7	103	0	.	290
PTPN1	5770	bcgsc.ca	37	20	49195060	49195060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN1	NM_002827	exon6	c.G596T	p.R199L	.	.	93	5	82	0	.	1082
PTPN23	25930	bcgsc.ca	37	3	47454017	47454017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN23	NM_015466	exon24	c.T4331C	p.F1444S	.	.	64	4	82	0	.	227
PTPN6	5777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7064833	7064833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPN6	NM_080548	exon7	c.A764G	p.K255R	.	.	55	7	59	0	.	703
PTPRB	5787	ucsc.edu	37	12	70954704	70954704	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPRB	NM_001109754	exon17	c.T4179C	p.S1393S	.	.	44	4	58	0	.	226
PTPRK	5796	bcgsc.ca	37	6	128399996	128399996	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPRK	NM_001135648	exon11	c.A1845T	p.V615V	.	.	76	6	128	0	.	231
PTPRK	5796	bcgsc.ca	37	6	128411097	128411097	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PTPRK	NM_001135648	exon8	c.A1203T	p.I401I	.	.	58	4	88	0	.	231
PUS10	150962	bcgsc.ca	37	2	61175187	61175187	+	Missense_Mutation	SNP	T	T	C	rs201759127		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PUS10	NM_144709	exon16	c.A1442G	p.Q481R	.	.	59	4	67	0	T|0.999;C|0.001	291
PYROXD2	84795	ucsc.edu	37	10	100150494	100150494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	PYROXD2	NM_032709	exon12	c.C1153T	p.P385S	.	.	25	4	17	0	.	90
QRICH1	54870	bcgsc.ca	37	3	49081901	49081901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	QRICH1	NM_198880	exon6	c.T1708C	p.S570P	.	.	77	4	93	0	.	91
QRICH1	54870	bcgsc.ca	37	3	49084529	49084529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	QRICH1	NM_198880	exon4	c.G1489T	p.A497S	.	.	127	6	162	0	.	91
QSER1	79832	bcgsc.ca	37	11	32955579	32955579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	QSER1	NM_001076786	exon4	c.G2388A	p.M796I	.	.	93	5	93	0	.	95
R3HDM2	22864	bcgsc.ca	37	12	57693186	57693186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	R3HDM2	NM_014925	exon4	c.G370A	p.E124K	.	.	196	6	182	0	.	92
RAB11FIP1	80223	bcgsc.ca	37	8	37730571	37730571	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB11FIP1	NM_001002814	exon4	c.T1749C	p.G583G	.	.	15	3	44	0	.	92
RAB11FIP5	26056	ucsc.edu	37	2	73302689	73302689	+	Nonsense_Mutation	SNP	G	G	T	rs201908082	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB11FIP5	NM_015470	exon5	c.C1922A	p.S641X	.	.	44	4	51	0	G|0.999;A|0.000	90
RAB1A	5861	bcgsc.ca	37	2	65315745	65315745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB1A	NM_004161	exon6	c.C500T	p.T167M	.	.	73	4	84	0	.	227
RAB21	23011	bcgsc.ca	37	12	72164470	72164470	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB21	NM_014999	exon3	c.T318C	p.S106S	.	.	84	4	78	0	.	227
RAB31	11031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9859227	9859227	+	Missense_Mutation	SNP	C	C	A	rs147665641	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB31	NM_006868	exon7	c.C493A	p.R165S	.	.	41	12	68	0	C|0.999;T|0.001	205
RAB38	23682	bcgsc.ca	37	11	87847220	87847220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB38	NM_022337	exon3	c.A572G	p.D191G	.	.	54	5	94	0	.	290
RAB3GAP2	25782	bcgsc.ca	37	1	220330812	220330812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAB3GAP2	NM_012414	exon31	c.G3355A	p.E1119K	.	.	177	5	116	0	.	90
RABEP1	9135	bcgsc.ca	37	17	5241368	5241368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RABEP1	NM_004703	exon5	c.A583G	p.I195V	.	.	46	4	62	0	.	659
RACGAP1	29127	bcgsc.ca	37	12	50399153	50399153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RACGAP1	NM_013277	exon6	c.G311T	p.R104L	.	.	57	4	96	0	.	227
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4874647	4874647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RADIL	NM_018059	exon4	c.C1007T	p.T336I	.	.	35	20	41	0	.	994
RAET1E	135250	ucsc.edu	37	6	150209682	150209682	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAET1E	NM_139165	exon4	c.G744A	p.W248X	.	.	48	5	66	0	.	90
RANBP2	5903	broad.mit.edu	37	2	109371681	109371681	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RANBP2	NM_006267	exon17	c.T2432G	p.L811R	.	.	849	15	1090	1	.	675
RANBP2	5903	ucsc.edu	37	2	109383262	109383262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RANBP2	NM_006267	exon20	c.A6267G	p.I2089M	.	.	38	4	37	0	.	675
RAPGEF6	51735	bcgsc.ca	37	5	130788821	130788821	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAPGEF6	NM_001164387	exon22	c.G3141T	p.M1047I	.	.	89	6	72	0	.	661
RAPSN	5913	bcgsc.ca	37	11	47469612	47469612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RAPSN	NM_032645	exon2	c.A283G	p.K95E	.	.	62	4	50	1	.	91
RASEF	158158	bcgsc.ca	37	9	85624602	85624602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RASEF	NM_152573	exon6	c.G913T	p.D305Y	.	.	77	4	147	0	.	280
RASGRP1	10125	bcgsc.ca	37	15	38799930	38799930	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RASGRP1	NM_001128602	exon9	c.G1239A	p.L413L	.	.	33	3	51	0	.	697
RASGRP1	10125	bcgsc.ca	37	15	38803842	38803842	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RASGRP1	NM_001128602	exon8	c.A929G	p.K310R	.	.	49	4	52	1	.	697
RBBP5	5929	bcgsc.ca	37	1	205084063	205084063	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBBP5	NM_005057	exon3	c.C72A	p.I24I	.	.	243	7	177	0	.	226
RBBP6	5930	bcgsc.ca	37	16	24573155	24573155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBBP6	NM_018703	exon10	c.A962G	p.N321S	.	.	147	5	138	1	.	230
RBBP7	5931	bcgsc.ca	37	X	16887225	16887225	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBBP7	NM_001198719	exon2	c.C267T	p.T89T	.	.	72	4	93	0	.	227
RBL1	5933	bcgsc.ca	37	20	35675543	35675543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBL1	NM_183404	exon12	c.G1518T	p.L506F	.	.	97	5	78	0	.	419
RBM12B	389677	bcgsc.ca	37	8	94748056	94748056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM12B	NM_203390	exon3	c.G583A	p.G195S	.	.	63	4	86	0	.	90
RBM19	9904	bcgsc.ca	37	12	114261076	114261076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM19	NM_001146699	exon24	c.C2836A	p.L946M	.	.	22	4	29	0	.	95
RBM19	9904	bcgsc.ca	37	12	114352799	114352799	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM19	NM_001146699	exon21	c.A2533G	p.S845G	.	.	81	4	98	0	.	95
RBM33	155435	bcgsc.ca	37	7	155538268	155538268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM33	NM_053043	exon14	c.A2951G	p.K984R	.	.	86	4	92	0	.	23
RBM46	166863	bcgsc.ca	37	4	155720150	155720150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM46	NM_144979	exon4	c.T836C	p.F279S	.	.	80	4	183	1	.	69
RBM47	54502	ucsc.edu;bcgsc.ca	37	4	40440519	40440519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBM47	NM_001098634	exon4	c.T392C	p.L131P	.	.	44	5	59	0	.	25
RBP7	116362	bcgsc.ca	37	1	10068293	10068293	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RBP7	NM_052960	exon3	c.A315G	p.R105R	.	.	120	5	97	0	.	90
RCBTB2	1102	ucsc.edu;bcgsc.ca	37	13	49073784	49073784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RCBTB2	NM_001268	exon13	c.A1357G	p.I453V	.	.	38	4	82	0	.	418
RCOR3	55758	bcgsc.ca	37	1	211451573	211451573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RCOR3	NM_001136223	exon6	c.C631A	p.Q211K	.	.	134	6	79	0	.	91
RECQL	5965	bcgsc.ca	37	12	21623936	21623936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RECQL	NM_032941	exon15	c.G1764T	p.M588I	.	.	84	7	134	1	.	228
REG1B	5968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79314699	79314699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REG1B	NM_006507	exon2	c.C40A	p.L14M	.	.	106	30	148	0	.	91
RELN	5649	bcgsc.ca	37	7	103185621	103185621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RELN	NM_173054	exon42	c.C6473T	p.T2158I	.	.	69	4	72	0	.	574
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73103403	73103403	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RELT	NM_152222	exon6	c.T515C	p.F172S	.	.	45	4	66	0	.	228
REPS2	9185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17095520	17095520	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REPS2	NM_004726	exon13	c.C1506T	p.P502P	.	.	33	15	26	0	.	131
REST	5978	bcgsc.ca	37	4	57796279	57796279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REST	NM_001193508	exon4	c.A1255G	p.T419A	.	.	61	4	107	0	.	232
RET	5979	bcgsc.ca	37	10	43623614	43623614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RET	NM_020975	exon20	c.A3242G	p.D1081G	.	.	98	5	124	0	.	4507
REXO1	57455	bcgsc.ca	37	19	1827950	1827950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	REXO1	NM_020695	exon2	c.G838A	p.G280S	.	.	64	4	73	0	.	90
RFWD3	55159	bcgsc.ca	37	16	74683032	74683032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RFWD3	NM_018124	exon4	c.C790A	p.Q264K	.	.	76	5	117	0	.	522
RFX3	5991	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	3346710	3346710	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RFX3	NM_134428	exon4	c.C172T	p.Q58X	.	.	44	10	70	0	.	93
RFX4	5992	bcgsc.ca	37	12	107002656	107002656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RFX4	NM_001206691	exon2	c.A152G	p.D51G	.	.	72	5	59	0	.	91
RFX8	731220	bcgsc.ca	37	2	102038199	102038199	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145664	exon4	c.A224G	p.D75G	.	.	128	5	143	0	.	.
RGAG1	57529	bcgsc.ca	37	X	109694566	109694566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RGAG1	NM_020769	exon3	c.G721T	p.A241S	.	.	53	4	42	1	.	132
RGMB	285704	bcgsc.ca	37	5	98115559	98115559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001012761	exon4	c.C535A	p.P179T	.	.	103	5	59	0	.	.
RGS21	431704	bcgsc.ca	37	1	192321289	192321289	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RGS21	NM_001039152	exon4	c.T201C	p.A67A	.	.	61	4	30	0	.	92
RGS7	6000	bcgsc.ca	37	1	241262048	241262048	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RGS7	NM_002924	exon3	c.A93T	p.I31I	.	.	76	4	55	0	.	232
RGS7BP	401190	bcgsc.ca	37	5	63905016	63905016	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RGS7BP	NM_001029875	exon6	c.C711T	p.P237P	.	.	113	6	95	0	.	68
RHBDD1	84236	bcgsc.ca	37	2	227771528	227771528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHBDD1	NM_001167608	exon6	c.C586A	p.L196M	.	.	166	6	159	0	.	91
RHBDL1	9028	bcgsc.ca	37	16	726389	726389	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHBDL1	NM_003961	exon1	c.G288A	p.L96L	.	.	62	4	52	0	.	90
RHCG	51458	bcgsc.ca	37	15	90020352	90020352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon8	c.G1198A	p.V400M	.	.	74	4	71	1	.	226
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	15	90023512	90023512	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon4	c.C650A	p.S217X	.	.	44	19	44	0	.	226
RHCG	51458	ucsc.edu;bcgsc.ca	37	15	90039658	90039658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHCG	NM_016321	exon1	c.T118C	p.W40R	.	.	31	4	32	0	.	226
RHNO1	83695	bcgsc.ca	37	12	2994625	2994625	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001257098	exon2	c.A93G	p.A31A	.	.	104	5	138	0	.	.
RHOBTB2	23221	ucsc.edu;bcgsc.ca	37	8	22874843	22874843	+	Missense_Mutation	SNP	G	G	A	rs143264894		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHOBTB2	NM_001160036	exon12	c.G2111A	p.R704Q	.	.	33	4	66	0	G|1.000;A|0.000	416
RHOBTB3	22836	bcgsc.ca	37	5	95072727	95072727	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RHOBTB3	NM_014899	exon3	c.A363G	p.R121R	.	.	78	4	58	0	.	228
RIBC1	158787	bcgsc.ca	37	X	53454993	53454993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIBC1	NM_001031745	exon4	c.C160A	p.R54S	.	.	55	4	94	2	.	130
RIC8B	55188	bcgsc.ca	37	12	107237649	107237649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIC8B	NM_018157	exon6	c.G1085T	p.G362V	.	.	60	5	42	0	.	91
RIF1	55183	bcgsc.ca	37	2	152296636	152296636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIF1	NM_018151	exon15	c.A1642G	p.T548A	.	.	93	6	105	0	.	300
RIMS1	22999	bcgsc.ca	37	6	72960687	72960687	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIMS1	NM_014989	exon14	c.T2436C	p.T812T	.	.	82	4	127	0	.	144
RIMS2	9699	ucsc.edu;bcgsc.ca	37	8	105001616	105001616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIMS2	NM_001100117	exon17	c.T3011C	p.V1004A	.	.	34	4	29	0	.	279
RIOK1	83732	bcgsc.ca	37	6	7402859	7402859	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIOK1	NM_031480	exon7	c.A597G	p.T199T	.	.	134	6	103	0	.	336
RIPK1	8737	bcgsc.ca	37	6	3081223	3081223	+	Missense_Mutation	SNP	C	C	T	rs181459394		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RIPK1	NM_003804	exon3	c.C332T	p.P111L	.	.	184	7	117	0	C|0.999;T|0.000	1044
RMDN3	55177	bcgsc.ca	37	15	41046880	41046880	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_018145	exon2	c.A102G	p.R34R	.	.	48	5	44	0	.	.
RMI1	80010	bcgsc.ca	37	9	86617383	86617383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RMI1	NM_024945	exon3	c.G1482T	p.L494F	.	.	35	4	100	0	.	90
RMND1	55005	bcgsc.ca	37	6	151766736	151766736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RMND1	NM_017909	exon2	c.A211G	p.N71D	.	.	84	4	131	0	.	90
RNASE2	6036	bcgsc.ca	37	14	21424410	21424410	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNASE2	NM_002934	exon2	c.C480A	p.I160I	.	.	59	4	144	0	.	91
RNF115	27246	bcgsc.ca	37	1	145663364	145663364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF115	NM_014455	exon4	c.A425G	p.E142G	.	.	146	6	99	0	.	91
RNF123	63891	bcgsc.ca	37	3	49737677	49737677	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF123	NM_022064	exon13	c.G1002T	p.V334V	.	.	51	6	72	0	.	584
RNF123	63891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49753579	49753579	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF123	NM_022064	exon34	c.G3384C	p.L1128L	.	.	47	8	28	0	.	584
RNF168	165918	ucsc.edu;bcgsc.ca	37	3	196229935	196229935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF168	NM_152617	exon1	c.A110G	p.K37R	.	.	43	5	78	0	.	90
RNF19A	25897	bcgsc.ca	37	8	101299816	101299816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF19A	NM_015435	exon3	c.T587C	p.V196A	.	.	104	4	87	0	.	229
RNF20	56254	bcgsc.ca	37	9	104314050	104314050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF20	NM_019592	exon11	c.G1357A	p.E453K	.	.	67	4	84	0	.	231
RNF213	57674	bcgsc.ca	37	17	78324185	78324185	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF213	NM_001256071	exon31	c.T10173C	p.I3391I	.	.	136	6	84	0	.	577
RNF32	140545	bcgsc.ca	37	7	156451164	156451164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF32	NM_001184996	exon7	c.C584A	p.A195D	.	.	80	4	108	0	.	226
RNF6	6049	bcgsc.ca	37	13	26788873	26788873	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNF6	NM_183043	exon5	c.A1146G	p.E382E	.	.	74	4	114	0	.	228
RNGTT	8732	ucsc.edu	37	6	89322482	89322482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNGTT	NM_003800	exon16	c.C1750A	p.L584I	.	.	43	4	115	0	.	91
RNLS	55328	bcgsc.ca	37	10	90342022	90342022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNLS	NM_018363	exon2	c.G161A	p.C54Y	.	.	157	6	187	0	.	91
RNPEPL1	57140	bcgsc.ca	37	2	241513289	241513289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RNPEPL1	NM_018226	exon4	c.G919A	p.G307R	.	.	91	5	135	0	.	154
RNU6-81	100873780	bcgsc.ca	37	2	132354684	132354684	+	RNA	DEL	A	A	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	739	153	1067	0	.	.
RPA2	6118	bcgsc.ca	37	1	28223580	28223580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPA2	NM_002946	exon6	c.A461G	p.E154G	.	.	77	4	96	0	.	228
RPGRIP1L	23322	bcgsc.ca	37	16	53706904	53706904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPGRIP1L	NM_001127897	exon8	c.C907T	p.H303Y	.	.	71	5	130	1	.	91
RPRD1A	55197	bcgsc.ca	37	18	33573209	33573209	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPRD1A	NM_018170	exon7	c.C844A	p.R282R	.	.	63	4	85	0	.	154
RPRD2	23248	bcgsc.ca	37	1	150429807	150429807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPRD2	NM_015203	exon8	c.A914G	p.K305R	.	.	94	4	42	0	.	23
RPS15A	6210	bcgsc.ca	37	16	18796111	18796111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPS15A	NM_001030009	exon4	c.T248C	p.L83P	.	.	69	4	71	0	.	90
RPS6KA4	8986	bcgsc.ca	37	11	64127953	64127953	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RPS6KA4	NM_001006944	exon4	c.T351C	p.Y117Y	.	.	20	3	41	1	.	1036
RRAGD	58528	bcgsc.ca	37	6	90089015	90089015	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RRAGD	NM_021244	exon4	c.T687C	p.A229A	.	.	25	4	40	0	.	229
RRP12	23223	bcgsc.ca	37	10	99116899	99116899	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RRP12	NM_015179	exon34	c.A3846G	p.R1282R	.	.	52	4	44	0	.	92
RSRC2	65117	bcgsc.ca	37	12	122992939	122992939	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RSRC2	NM_023012	exon8	c.A861G	p.T287T	.	.	62	4	55	0	.	91
RTDR1	27156	bcgsc.ca	37	22	23476264	23476264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RTDR1	NM_014433	exon4	c.T370C	p.C124R	.	.	29	4	48	0	.	516
RTTN	25914	bcgsc.ca	37	18	67684797	67684797	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RTTN	NM_173630	exon46	c.A6267G	p.E2089E	.	.	123	6	157	0	.	141
RUFY2	55680	bcgsc.ca	37	10	70141071	70141071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RUFY2	NM_017987	exon11	c.A1130G	p.E377G	.	.	146	7	184	0	.	91
RUFY3	22902	bcgsc.ca	37	4	71655266	71655266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RUFY3	NM_001130709	exon12	c.A1474G	p.K492E	.	.	78	4	140	0	.	90
RUFY3	22902	bcgsc.ca	37	4	71655292	71655292	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RUFY3	NM_001130709	exon12	c.T1500A	p.I500I	.	.	68	4	129	0	.	90
RWDD1	51389	ucsc.edu;bcgsc.ca	37	6	116901493	116901493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RWDD1	NM_015952	exon2	c.G109A	p.V37M	.	.	31	4	65	0	.	92
RWDD2B	10069	bcgsc.ca	37	21	30380729	30380729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RWDD2B	NM_016940	exon2	c.C281A	p.S94Y	.	.	71	4	117	1	.	68
RXFP1	59350	ucsc.edu;bcgsc.ca	37	4	159572966	159572966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXFP1	NM_001253727	exon18	c.C2114A	p.P705Q	.	.	30	4	71	0	.	91
RXRA	6256	bcgsc.ca	37	9	137293704	137293704	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXRA	NM_002957	exon2	c.G255A	p.L85L	.	.	36	4	107	0	.	188
RXRG	6258	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	165376062	165376062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RXRG	NM_006917	exon9	c.G1231A	p.E411K	.	.	74	7	34	0	.	186
RYR2	6262	bcgsc.ca	37	1	237620009	237620009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RYR2	NM_001035	exon16	c.T1586C	p.I529T	.	.	83	4	66	0	.	158
RYR2	6262	bcgsc.ca	37	1	237753290	237753290	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	RYR2	NM_001035	exon30	c.G3796A	p.E1266K	.	.	93	4	97	1	.	158
S1PR5	53637	ucsc.edu;bcgsc.ca	37	19	10625491	10625491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	S1PR5	NM_030760	exon2	c.G197T	p.R66L	.	.	24	4	27	0	.	523
SAMM50	25813	bcgsc.ca	37	22	44368128	44368128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SAMM50	NM_015380	exon5	c.T335C	p.L112P	.	.	67	5	77	0	.	91
SASS6	163786	bcgsc.ca	37	1	100587955	100587955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SASS6	NM_194292	exon4	c.C292A	p.H98N	.	.	66	4	97	0	.	70
SBF1	6305	bcgsc.ca	37	22	50894677	50894677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SBF1	NM_002972	exon31	c.C4234A	p.R1412S	.	.	65	4	94	0	.	90
SCAF11	9169	bcgsc.ca	37	12	46321276	46321276	+	Silent	SNP	A	A	G	rs143857988	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCAF11	NM_004719	exon11	c.T2208C	p.S736S	.	.	97	4	97	1	A|1.000;C|0.000	93
SCAF4	57466	bcgsc.ca	37	21	33076087	33076087	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCAF4	NM_020706	exon4	c.T312A	p.S104S	.	.	81	4	122	0	.	90
SCAND3	114821	bcgsc.ca	37	6	28541047	28541047	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCAND3	NM_052923	exon4	c.C2619T	p.T873T	.	.	208	7	125	0	.	91
SCAP	22937	bcgsc.ca	37	3	47468672	47468672	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCAP	NM_012235	exon6	c.C712T	p.L238L	.	.	61	4	63	0	.	91
SCN1A	6323	bcgsc.ca	37	2	166847981	166847981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCN1A	NM_001165963	exon26	c.T5804A	p.V1935E	.	.	98	6	117	1	.	147
SCNN1A	6337	bcgsc.ca	37	12	6483934	6483934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCNN1A	NM_001159576	exon1	c.C193A	p.L65M	.	.	48	4	54	0	.	90
SCPEP1	59342	bcgsc.ca	37	17	55079451	55079451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCPEP1	NM_021626	exon12	c.T1205C	p.L402P	.	.	121	7	80	0	.	91
SCUBE1	80274	bcgsc.ca	37	22	43735131	43735131	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SCUBE1	NM_173050	exon2	c.G199A	p.G67R	.	.	51	4	44	0	.	93
SDAD1	55153	bcgsc.ca	37	4	76895279	76895279	+	Missense_Mutation	SNP	C	C	T	rs3195618		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SDAD1	NM_018115	exon7	c.G586A	p.A196T	.	.	63	4	146	1	.	91
SDCCAG3	10807	ucsc.edu;bcgsc.ca	37	9	139298615	139298615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SDCCAG3	NM_001039707	exon9	c.A1100G	p.E367G	.	.	44	4	66	0	.	90
SDCCAG8	10806	bcgsc.ca	37	1	243542056	243542056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SDCCAG8	NM_006642	exon13	c.A1507G	p.S503G	.	.	180	6	134	1	.	90
SEC23A	10484	bcgsc.ca	37	14	39508270	39508270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEC23A	NM_006364	exon19	c.T2173C	p.S725P	.	.	137	6	229	0	.	95
SEC24C	9632	bcgsc.ca	37	10	75527705	75527705	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEC24C	NM_004922	exon16	c.C2121T	p.A707A	.	.	158	5	132	0	.	92
SEC63	11231	bcgsc.ca	37	6	108227738	108227738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEC63	NM_007214	exon10	c.C875T	p.P292L	.	.	70	4	116	1	.	227
SEL1L	6400	ucsc.edu	37	14	81943356	81943356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEL1L	NM_005065	exon21	c.C2345A	p.P782H	.	.	45	4	74	0	.	227
SELENBP1	8991	bcgsc.ca	37	1	151337404	151337404	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SELENBP1	NM_001258289	exon11	c.C1380A	p.I460I	.	.	102	5	63	0	.	90
SEMA3A	10371	bcgsc.ca	37	7	83640357	83640357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3A	NM_006080	exon9	c.G976A	p.G326R	.	.	71	4	74	0	.	156
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83590805	83590805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3A	NM_006080	exon17	c.G2198T	p.R733L	.	.	182	76	234	0	.	156
SEMA3D	223117	bcgsc.ca	37	7	84649565	84649565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3D	NM_152754	exon12	c.A1487G	p.E496G	.	.	107	5	137	2	.	138
SEMA3E	9723	bcgsc.ca	37	7	83034813	83034813	+	Silent	SNP	G	G	T	rs201663991	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA3E	NM_012431	exon9	c.C951A	p.T317T	.	.	128	6	142	0	.	93
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74901762	74901762	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SEMA4F	NM_004263	exon8	c.G960C	p.G320G	.	.	93	27	140	0	.	93
SERINC1	57515	bcgsc.ca	37	6	122777679	122777679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERINC1	NM_020755	exon3	c.A318T	p.L106F	.	.	65	4	129	0	.	91
SERPINA1	5265	bcgsc.ca	37	14	94844889	94844889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERPINA1	NM_001127701	exon7	c.C1154T	p.P385L	.	.	90	4	181	0	.	226
SERPINB10	5273	bcgsc.ca	37	18	61602379	61602379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERPINB10	NM_005024	exon7	c.C1097T	p.P366L	.	.	64	5	101	0	.	227
SERPINC1	462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173878764	173878764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SERPINC1	NM_000488	exon5	c.G1079A	p.G360D	.	.	40	7	34	0	.	227
SESTD1	91404	bcgsc.ca	37	2	179982334	179982334	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SESTD1	NM_178123	exon14	c.A1449G	p.E483E	.	.	187	6	206	1	.	228
SETDB2	83852	bcgsc.ca	37	13	50035266	50035266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SETDB2	NM_001160308	exon3	c.C176A	p.A59E	.	.	103	4	197	0	.	91
SETX	23064	ucsc.edu;bcgsc.ca	37	9	135210076	135210076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SETX	NM_015046	exon7	c.A757T	p.M253L	.	.	39	4	72	0	.	93
SF3B3	23450	bcgsc.ca	37	16	70573039	70573039	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SF3B3	NM_012426	exon8	c.T996C	p.T332T	.	.	74	5	120	0	.	91
SF3B3	23450	bcgsc.ca	37	16	70605581	70605581	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SF3B3	NM_012426	exon26	c.G3519T	p.V1173V	.	.	26	3	44	0	.	91
SFMBT2	57713	bcgsc.ca	37	10	7269835	7269835	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SFMBT2	NM_001029880	exon10	c.T1185C	p.P395P	.	.	32	6	36	0	.	141
SFPQ	6421	bcgsc.ca	37	1	35652818	35652818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SFPQ	NM_005066	exon8	c.C1850A	p.A617E	.	.	178	8	265	1	.	231
SFXN3	81855	ucsc.edu	37	10	102799268	102799268	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SFXN3	NM_030971	exon12	c.G904T	p.E302X	.	.	41	4	50	0	.	91
SGK3	23678	bcgsc.ca	37	8	67771755	67771755	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SGK3	NM_001033578	exon17	c.A1430G	p.E477G	.	.	89	5	112	0	.	1003
SGMS1	259230	bcgsc.ca	37	10	52103649	52103649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SGMS1	NM_147156	exon7	c.C226T	p.H76Y	.	.	82	4	134	0	.	227
SH3GL3	6457	ucsc.edu	37	15	84245473	84245473	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SH3GL3	NM_003027	exon6	c.T604C	p.F202L	.	.	42	4	72	0	.	92
SH3KBP1	30011	bcgsc.ca	37	X	19663534	19663534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SH3KBP1	NM_031892	exon7	c.G786A	p.M262I	.	.	133	7	131	1	.	130
SH3PXD2A	9644	bcgsc.ca	37	10	105362237	105362237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SH3PXD2A	NM_014631	exon14	c.C2654T	p.P885L	.	.	76	4	85	0	.	226
SIGLEC6	946	bcgsc.ca	37	19	52033171	52033171	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIGLEC6	NM_001177548	exon5	c.C852A	p.L284L	.	.	91	5	104	0	.	91
SIK2	23235	bcgsc.ca	37	11	111591371	111591371	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIK2	NM_015191	exon11	c.G1665A	p.L555L	.	.	46	4	64	0	.	783
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16989085	16989085	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIN3B	NM_015260	exon19	c.3142delG	p.V1048fs	.	.	16	16	20	0	.	228
SIX4	51804	bcgsc.ca	37	14	61187091	61187091	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SIX4	NM_017420	exon2	c.C936A	p.L312L	.	.	92	5	148	0	.	154
SKI	6497	bcgsc.ca	37	1	2237492	2237492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SKI	NM_003036	exon6	c.A1801G	p.K601E	.	.	53	5	90	1	.	838
SLAIN1	122060	bcgsc.ca	37	13	78320927	78320927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLAIN1	NM_001242868	exon4	c.C1195A	p.Q399K	.	.	118	5	129	1	.	93
SLC12A6	9990	bcgsc.ca	37	15	34530485	34530485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC12A6	NM_133647	exon20	c.T2750C	p.V917A	.	.	91	5	81	0	.	517
SLC12A6	9990	bcgsc.ca	37	15	34546649	34546649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC12A6	NM_133647	exon8	c.G1018A	p.V340M	.	.	74	5	81	0	.	517
SLC12A9	56996	bcgsc.ca	37	7	100458821	100458821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC12A9	NM_001267812	exon10	c.T1280C	p.V427A	.	.	56	4	64	0	.	90
SLC15A1	6564	bcgsc.ca	37	13	99378696	99378696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC15A1	NM_005073	exon3	c.T29C	p.F10S	.	.	64	4	54	0	.	91
SLC17A3	10786	bcgsc.ca	37	6	25845685	25845685	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC17A3	NM_001098486	exon12	c.A1422G	p.G474G	.	.	155	5	110	0	.	91
SLC22A17	51310	bcgsc.ca	37	14	23817722	23817722	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC22A17	NM_016609	exon5	c.T685C	p.F229L	.	.	76	4	133	2	.	226
SLC22A2	6582	bcgsc.ca	37	6	160671633	160671633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC22A2	NM_003058	exon3	c.G620T	p.R207L	.	.	45	4	100	0	.	154
SLC22A6	9356	ucsc.edu;bcgsc.ca	37	11	62751010	62751010	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC22A6	NM_153276	exon3	c.G627T	p.L209L	.	.	30	4	40	0	.	90
SLC23A1	9963	bcgsc.ca	37	5	138713999	138713999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC23A1	NM_152685	exon11	c.G1233T	p.M411I	.	.	194	8	128	0	.	90
SLC23A3	151295	bcgsc.ca	37	2	220026657	220026657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC23A3	NM_001144890	exon12	c.A1831G	p.R611G	.	.	55	4	50	0	.	44
SLC25A27	9481	bcgsc.ca	37	6	46632550	46632550	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC25A27	NM_001204051	exon5	c.T546A	p.A182A	.	.	149	10	93	0	.	90
SLC26A3	1811	bcgsc.ca	37	7	107431634	107431634	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC26A3	NM_000111	exon5	c.A429G	p.G143G	.	.	90	4	84	0	.	94
SLC26A6	65010	bcgsc.ca	37	3	48668677	48668677	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC26A6	NM_022911	exon8	c.C966A	p.V322V	.	.	64	4	63	0	.	946
SLC26A7	115111	bcgsc.ca	37	8	92406495	92406495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC26A7	NM_134266	exon19	c.C1985A	p.P662Q	.	.	74	6	80	0	.	92
SLC26A7	115111	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92301399	92301399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC26A7	NM_134266	exon3	c.G229T	p.V77L	.	.	256	57	245	3	.	92
SLC30A5	64924	bcgsc.ca	37	5	68413193	68413193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC30A5	NM_022902	exon11	c.G1409T	p.R470M	.	.	229	8	160	0	.	226
SLC35B4	84912	bcgsc.ca	37	7	133986859	133986859	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC35B4	NM_032826	exon5	c.C348T	p.Y116Y	.	.	57	4	85	0	.	91
SLC3A1	6519	bcgsc.ca	37	2	44502771	44502771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC3A1	NM_000341	exon1	c.C97A	p.Q33K	.	.	88	4	97	0	.	90
SLC4A10	57282	bcgsc.ca	37	2	162751214	162751214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC4A10	NM_001178015	exon11	c.C1220A	p.A407D	.	.	77	5	85	0	.	229
SLC4A9	83697	bcgsc.ca	37	5	139740901	139740901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC4A9	NM_001258428	exon3	c.C526A	p.L176M	.	.	83	4	57	0	.	67
SLC5A1	6523	bcgsc.ca	37	22	32480967	32480967	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC5A1	NM_000343	exon9	c.G966T	p.L322L	.	.	106	5	113	0	.	91
SLC5A8	160728	bcgsc.ca	37	12	101576611	101576611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC5A8	NM_145913	exon9	c.A1135G	p.R379G	.	.	63	4	62	0	.	90
SLC6A16	28968	bcgsc.ca	37	19	49812340	49812340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC6A16	NM_014037	exon7	c.T1022C	p.L341P	.	.	92	4	117	0	.	94
SLC6A18	348932	bcgsc.ca	37	5	1239597	1239597	+	Silent	SNP	G	G	A	rs146927207		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC6A18	NM_182632	exon6	c.G765A	p.L255L	.	.	64	4	62	0	G|1.000;A|0.000	91
SLC7A5	8140	ucsc.edu;bcgsc.ca	37	16	87868106	87868106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC7A5	NM_003486	exon9	c.G1382T	p.G461V	.	.	45	4	80	0	.	90
SLC8A1	6546	bcgsc.ca	37	2	40366804	40366804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLC8A1	NM_021097	exon9	c.A2282G	p.D761G	.	.	44	4	63	0	.	93
SLC9C1	285335	bcgsc.ca	37	3	111958782	111958782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_183061	exon12	c.A1351G	p.K451E	.	.	104	5	97	0	.	.
SLCO1B1	10599	bcgsc.ca	37	12	21329708	21329708	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLCO1B1	NM_006446	exon5	c.360-2A>G	.	.	.	56	4	153	0	.	97
SLCO2B1	11309	ucsc.edu	37	11	74911286	74911286	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLCO2B1	NM_007256	exon11	c.C1617T	p.C539C	.	.	40	5	23	0	.	154
SLIT2	9353	bcgsc.ca	37	4	20598090	20598090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLIT2	NM_004787	exon32	c.T3373C	p.C1125R	.	.	63	4	54	0	.	521
SLITRK1	114798	bcgsc.ca	37	13	84455545	84455545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLITRK1	NM_052910	exon1	c.A98G	p.E33G	.	.	47	4	75	1	.	94
SLK	9748	bcgsc.ca	37	10	105763234	105763234	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SLK	NM_014720	exon9	c.C2298T	p.S766S	.	.	84	4	84	0	.	549
SMAD9	4093	bcgsc.ca	37	13	37446949	37446949	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMAD9	NM_005905	exon3	c.A516G	p.P172P	.	.	62	4	111	0	.	414
SMARCA2	6595	bcgsc.ca	37	9	2186199	2186199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMARCA2	NM_003070	exon32	c.A4565G	p.E1522G	.	.	44	4	123	3	.	653
SMARCAD1	56916	bcgsc.ca	37	4	95195912	95195912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMARCAD1	NM_001128429	exon13	c.T1696A	p.L566I	.	.	65	4	117	0	.	229
SMARCAD1	56916	bcgsc.ca	37	4	95199820	95199820	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMARCAD1	NM_001128429	exon18	c.G2232T	p.S744S	.	.	66	4	114	1	.	229
SMC1B	27127	bcgsc.ca	37	22	45757732	45757732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMC1B	NM_148674	exon17	c.C2695A	p.L899M	.	.	66	4	90	0	.	229
SMC1B	27127	bcgsc.ca	37	22	45758878	45758878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMC1B	NM_148674	exon16	c.C2449A	p.L817I	.	.	72	4	143	0	.	229
SMC1B	27127	bcgsc.ca	37	22	45804770	45804770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMC1B	NM_148674	exon2	c.A119G	p.N40S	.	.	123	5	158	0	.	229
SMC3	9126	bcgsc.ca	37	10	112340690	112340690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMC3	NM_005445	exon8	c.C458A	p.S153Y	.	.	96	8	91	0	.	92
SMC5	23137	bcgsc.ca	37	9	72882846	72882846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMC5	NM_015110	exon3	c.T335C	p.F112S	.	.	81	4	102	0	.	229
SMCHD1	23347	bcgsc.ca	37	18	2796030	2796030	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMCHD1	NM_015295	exon46	c.A5803G	p.T1935A	.	.	104	6	151	0	.	46
SMG8	55181	bcgsc.ca	37	17	57290112	57290112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMG8	NM_018149	exon3	c.G1928A	p.G643E	.	.	90	4	47	0	.	93
SMYD1	150572	ucsc.edu;bcgsc.ca	37	2	88410004	88410004	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SMYD1	NM_198274	exon10	c.C1446T	p.S482S	.	.	45	4	47	0	.	229
SNAP25	6616	bcgsc.ca	37	20	10273884	10273884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNAP25	NM_130811	exon5	c.A239G	p.D80G	.	.	120	7	93	0	.	92
SNCAIP	9627	bcgsc.ca	37	5	121780413	121780413	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNCAIP	NM_005460	exon8	c.C1578T	p.T526T	.	.	81	4	51	0	.	92
SND1	27044	ucsc.edu;bcgsc.ca	37	7	127344990	127344990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SND1	NM_014390	exon8	c.C938A	p.A313E	.	.	43	4	68	0	.	92
SNORA4	619568	ucsc.edu	37	3	186505444	186505444	+	RNA	SNP	T	T	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	47	9	65	0	.	.
SNRNP70	6625	ucsc.edu	37	19	49610921	49610921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNRNP70	NM_003089	exon9	c.T617C	p.V206A	.	.	48	4	51	0	.	90
SNRPA	6626	bcgsc.ca	37	19	41263318	41263318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNRPA	NM_004596	exon2	c.G155T	p.R52M	.	.	59	4	57	0	.	93
SNX11	29916	broad.mit.edu	37	17	46189417	46189417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNX11	NM_013323	exon2	c.G12T	p.W4C	.	.	275	9	98	1	.	226
SNX7	51375	bcgsc.ca	37	1	99225675	99225675	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SNX7	NM_015976	exon9	c.A1344G	p.E448E	.	.	82	4	150	1	.	229
SORBS1	10580	bcgsc.ca	37	10	97154778	97154778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SORBS1	NM_001034955	exon12	c.A1277G	p.E426G	.	.	199	6	260	0	.	155
SORCS2	57537	bcgsc.ca	37	4	7655859	7655859	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SORCS2	NM_020777	exon5	c.814-2A>G	.	.	.	65	4	89	0	.	91
SOS1	6654	bcgsc.ca	37	2	39233638	39233638	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SOS1	NM_005633	exon17	c.A2706G	p.E902E	.	.	85	4	99	0	.	851
SOS2	6655	bcgsc.ca	37	14	50597271	50597271	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SOS2	NM_006939	exon20	c.T3285C	p.S1095S	.	.	86	5	194	1	.	849
SOX5	6660	bcgsc.ca	37	12	23687303	23687303	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SOX5	NM_006940	exon15	c.T2142C	p.G714G	.	.	78	6	113	2	.	655
SPATA16	83893	bcgsc.ca	37	3	172766803	172766803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	SPATA16,NS,carcinoma,0	SPATA16	NM_031955	exon3	c.A694G	p.T232A	.	.	87	4	84	0	.	94
SPATA5L1	79029	bcgsc.ca	37	15	45707926	45707926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPATA5L1	NM_024063	exon5	c.G1786A	p.G596S	.	.	85	4	98	0	.	94
SPCS3	60559	bcgsc.ca	37	4	177243342	177243342	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPCS3	NM_021928	exon2	c.T165C	p.T55T	.	.	65	5	90	0	.	23
SPEF2	79925	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	35618118	35618118	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPEF2	NM_024867	exon1	c.C19T	p.Q7X	.	.	118	15	99	0	.	26
SPG20	23111	bcgsc.ca	37	13	36909944	36909944	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPG20	NM_015087	exon2	c.A24G	p.G8G	.	.	90	4	143	1	.	90
SPINK9	643394	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	147718126	147718126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPINK9	NM_001040433	exon3	c.G173T	p.G58V	.	.	469	131	370	2	.	22
SPTAN1	6709	bcgsc.ca	37	9	131346108	131346108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPTAN1	NM_003127	exon16	c.C2053A	p.R685S	.	.	62	5	75	0	.	158
SPTBN4	57731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41009905	41009905	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SPTBN4	NM_020971	exon12	c.G1531C	p.D511H	.	.	63	40	65	1	.	94
SRBD1	55133	bcgsc.ca	37	2	45640296	45640296	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRBD1	NM_018079	exon19	c.G2470A	p.D824N	.	.	84	5	144	0	.	90
SRBD1	55133	ucsc.edu;bcgsc.ca	37	2	45832562	45832562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRBD1	NM_018079	exon2	c.A19G	p.R7G	.	.	44	4	47	0	.	90
SRM	6723	bcgsc.ca	37	1	11116769	11116769	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRM	NM_003132	exon4	c.G427A	p.G143S	.	.	56	4	64	0	.	90
SRP72	6731	bcgsc.ca	37	4	57335934	57335934	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SRP72	NM_006947	exon2	c.A225G	p.L75L	.	.	58	4	48	0	.	116
SSBP4	170463	bcgsc.ca	37	19	18545048	18545048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SSBP4	NM_032627	exon18	c.A1150G	p.S384G	.	.	31	6	39	0	.	90
SSFA2	6744	bcgsc.ca	37	2	182781129	182781129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SSFA2	NM_001130445	exon11	c.G2762A	p.R921K	.	.	48	4	39	0	.	153
SSR4	6748	bcgsc.ca	37	X	153063226	153063226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SSR4	NM_001204526	exon5	c.A341G	p.E114G	.	.	51	4	39	1	.	130
SSX1	6756	bcgsc.ca	37	X	48123270	48123270	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SSX1	NM_005635	exon6	c.A384G	p.E128E	.	.	178	6	219	0	.	522
ST3GAL3	6487	bcgsc.ca	37	1	44290519	44290519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ST3GAL3	NM_174963	exon5	c.T371C	p.L124P	.	.	51	4	56	0	.	93
ST6GAL2	84620	bcgsc.ca	37	2	107450529	107450529	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ST6GAL2	NM_032528	exon3	c.C1017T	p.T339T	.	.	148	7	112	0	.	191
ST8SIA4	7903	bcgsc.ca	37	5	100147785	100147785	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ST8SIA4	NM_005668	exon5	c.T846C	p.L282L	.	.	124	5	114	0	.	153
STAB1	23166	bcgsc.ca	37	3	52537501	52537501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STAB1	NM_015136	exon8	c.A836G	p.N279S	.	.	92	5	89	0	.	139
STAG1	10274	bcgsc.ca	37	3	136068175	136068175	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STAG1	NM_005862	exon29	c.G3096A	p.E1032E	.	.	94	5	132	0	.	228
STAG1	10274	bcgsc.ca	37	3	136087993	136087993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STAG1	NM_005862	exon24	c.G2502A	p.M834I	.	.	84	4	106	0	.	228
STARD5	80765	bcgsc.ca	37	15	81611739	81611739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STARD5	NM_181900	exon4	c.G341T	p.R114I	.	.	53	4	72	0	.	91
STAU2	27067	bcgsc.ca	37	8	74464351	74464351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STAU2	NM_001164380	exon13	c.A1426T	p.T476S	.	.	158	7	169	0	.	90
STBD1	8987	bcgsc.ca	37	4	77230328	77230328	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STBD1	NM_003943	exon2	c.T252C	p.I84I	.	.	89	5	137	1	.	69
STIM2	57620	bcgsc.ca	37	4	27004588	27004588	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STIM2	NM_001169118	exon7	c.A843G	p.V281V	.	.	64	4	71	0	.	91
STK10	6793	bcgsc.ca	37	5	171488165	171488165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STK10	NM_005990	exon14	c.G2190A	p.M730I	.	.	83	4	55	0	.	1022
STK10	6793	bcgsc.ca	37	5	171534814	171534814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STK10	NM_005990	exon5	c.A563G	p.K188R	.	.	79	5	68	0	.	1022
STK32C	282974	bcgsc.ca	37	10	134039113	134039113	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STK32C	NM_173575	exon6	c.A690G	p.A230A	.	.	78	4	86	0	.	1083
STOM	2040	bcgsc.ca	37	9	124103566	124103566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STOM	NM_004099	exon7	c.G781T	p.A261S	.	.	65	4	98	0	.	90
STRIP2	57464	bcgsc.ca	37	7	129096315	129096315	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_020704	exon9	c.C870A	p.L290L	.	.	56	4	52	0	.	.
STX3	6809	bcgsc.ca	37	11	59560593	59560593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STX3	NM_004177	exon7	c.A488G	p.E163G	.	.	40	4	74	0	.	92
STXBP1	6812	bcgsc.ca	37	9	130427598	130427598	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	STXBP1	NM_001032221	exon8	c.A651G	p.P217P	.	.	12	3	32	0	.	91
SUCLA2	8803	bcgsc.ca	37	13	48528673	48528673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SUCLA2	NM_003850	exon7	c.G822T	p.K274N	.	.	82	4	154	0	.	226
SUGP2	10147	bcgsc.ca	37	19	19136023	19136023	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SUGP2	NM_014884	exon3	c.A1134G	p.R378R	.	.	53	4	81	0	.	91
SUGP2	10147	bcgsc.ca	37	19	19136282	19136282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SUGP2	NM_014884	exon3	c.A875G	p.Q292R	.	.	51	6	70	0	.	91
SULT2A1	6822	bcgsc.ca	37	19	48377904	48377923	+	Frame_Shift_Del	DEL	TTTCTTTTACCTTTTCTCAG	TTTCTTTTACCTTTTCTCAG	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TTTCTTTTACCTTTTCTCAG	TTTCTTTTACCTTTTCTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SULT2A1	NM_003167	exon5	c.736_745del	p.246_249del	.	.	78	4	121	0	.	92
SUPT20HL1	100130302	bcgsc.ca	37	X	24381409	24381409	+	Missense_Mutation	SNP	G	G	A	rs142864280		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001136234	exon1	c.G532A	p.V178M	.	.	185	6	256	0	G|0.958;A|0.042	.
SUPT7L	9913	ucsc.edu	37	2	27878235	27878235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SUPT7L	NM_014860	exon5	c.T979C	p.S327P	.	.	47	6	60	2	.	92
SUPV3L1	6832	bcgsc.ca	37	10	70968575	70968575	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SUPV3L1	NM_003171	exon15	c.T2145C	p.A715A	.	.	60	4	73	0	.	227
SV2A	9900	bcgsc.ca	37	1	149879747	149879747	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SV2A	NM_014849	exon9	c.T1391C	p.L464P	.	.	88	4	76	0	.	97
SVEP1	79987	bcgsc.ca	37	9	113212531	113212531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SVEP1	NM_153366	exon24	c.G3911A	p.C1304Y	.	.	46	4	86	0	.	75
SVEP1	79987	bcgsc.ca	37	9	113243651	113243651	+	Missense_Mutation	SNP	C	C	T	rs143662493		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SVEP1	NM_153366	exon12	c.G2236A	p.G746R	.	.	42	4	88	0	C|0.999;T|0.000	75
SYMPK	8189	bcgsc.ca	37	19	46341739	46341739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYMPK	NM_004819	exon10	c.C1222T	p.P408S	.	.	68	4	39	0	.	91
SYN1	6853	bcgsc.ca	37	X	47464447	47464447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYN1	NM_006950	exon5	c.T704C	p.L235P	.	.	72	5	56	0	.	131
SYNCRIP	10492	bcgsc.ca	37	6	86350209	86350209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNCRIP	NM_006372	exon3	c.G222T	p.L74F	.	.	98	4	218	0	.	92
SYNE1	23345	bcgsc.ca	37	6	152819911	152819911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE1	NM_033071	exon11	c.T926C	p.F309S	.	.	93	4	136	1	.	607
SYNE2	23224	bcgsc.ca	37	14	64595178	64595178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE2	NM_182914	exon74	c.A13926G	p.I4642M	.	.	59	4	115	0	.	164
SYNE2	23224	bcgsc.ca	37	14	64688337	64688337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE2	NM_182914	exon112	c.G20105A	p.S6702N	.	.	55	4	86	0	.	164
SYNE2	23224	ucsc.edu;bcgsc.ca	37	14	64678684	64678684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNE2	NM_182914	exon104	c.C18729A	p.F6243L	.	.	18	4	55	0	.	164
SYNJ1	8867	bcgsc.ca	37	21	34022633	34022633	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNJ1	NM_203446	exon23	c.T3015C	p.I1005I	.	.	117	5	178	0	.	232
SYNJ1	8867	bcgsc.ca	37	21	34029180	34029180	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNJ1	NM_203446	exon21	c.T2729A	p.F910Y	.	.	70	4	97	0	.	232
SYNPO	11346	bcgsc.ca	37	5	150029736	150029736	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNPO	NM_001166209	exon3	c.G2631T	p.Q877H	.	.	64	5	62	0	.	153
SYNPO2	171024	ucsc.edu;bcgsc.ca	37	4	119952907	119952907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNPO2	NM_001128934	exon4	c.T2977C	p.S993P	.	.	36	4	75	0	.	92
SYNRG	11276	bcgsc.ca	37	17	35921622	35921622	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYNRG	NM_007247	exon12	c.T1551A	p.F517L	.	.	164	5	107	0	.	92
SYT9	143425	bcgsc.ca	37	11	7439295	7439295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYT9	NM_175733	exon5	c.T1273C	p.F425L	.	.	70	4	60	0	.	155
SYTL4	94121	bcgsc.ca	37	X	99945116	99945116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYTL4	NM_001129896	exon9	c.A764G	p.E255G	.	.	97	5	88	0	.	132
SYTL5	94122	bcgsc.ca	37	X	37893199	37893199	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SYTL5	NM_001163334	exon1	c.A57G	p.E19E	.	.	67	4	57	0	.	131
SZT2	23334	bcgsc.ca	37	1	43900948	43900948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SZT2	NM_015284	exon41	c.G5811T	p.W1937C	.	.	62	4	58	0	.	144
SZT2	23334	bcgsc.ca	37	1	43908859	43908859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	SZT2	NM_015284	exon59	c.A8249G	p.E2750G	.	.	56	4	81	0	.	144
TACC2	10579	bcgsc.ca	37	10	123844130	123844130	+	Silent	SNP	A	A	G	rs151146332	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACC2	NM_206862	exon4	c.A2115G	p.E705E	.	.	65	4	56	0	A|1.000;C|0.000	296
TACC2	10579	bcgsc.ca	37	10	123845773	123845773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACC2	NM_206862	exon4	c.T3758C	p.V1253A	.	.	25	4	30	1	.	296
TACR1	6869	bcgsc.ca	37	2	75347745	75347745	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACR1	NM_001058	exon2	c.G539T	p.C180F	.	.	66	4	107	0	.	523
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71175879	71175879	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TACR2	NM_001057	exon1	c.C201T	p.V67V	.	.	82	27	50	0	.	522
TADA2B	93624	ucsc.edu;bcgsc.ca	37	4	7055982	7055982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TADA2B	NM_152293	exon2	c.A464G	p.D155G	.	.	30	4	50	0	.	68
TAF1D	79101	bcgsc.ca	37	11	93470288	93470288	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TAF1D	NM_024116	exon4	c.A577G	p.S193G	.	.	152	5	248	0	.	90
TAF2	6873	bcgsc.ca	37	8	120774682	120774682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TAF2	NM_003184	exon19	c.C2531A	p.P844Q	.	.	76	4	89	0	.	274
TAF4B	6875	bcgsc.ca	37	18	23872317	23872317	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TAF4B	NM_005640	exon8	c.C1698A	p.T566T	.	.	80	5	92	0	.	71
TANGO6	79613	bcgsc.ca	37	16	69056854	69056854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_024562	exon16	c.A2966G	p.D989G	.	.	116	7	185	4	.	.
TARS2	80222	bcgsc.ca	37	1	150471706	150471706	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TARS2	NM_025150	exon13	c.C1554T	p.A518A	.	.	91	5	69	0	.	91
TARS	6897	bcgsc.ca	37	5	33453471	33453471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TARS	NM_001258438	exon5	c.A506G	p.D169G	.	.	58	5	34	1	.	92
TAS2R42	353164	bcgsc.ca	37	12	11338810	11338810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TAS2R42	NM_181429	exon1	c.T734C	p.V245A	.	.	54	4	105	0	.	69
TAS2R50	259296	bcgsc.ca	37	12	11139089	11139089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TAS2R50	NM_176890	exon1	c.G371A	p.R124K	.	.	69	4	96	0	.	92
TBC1D13	54662	bcgsc.ca	37	9	131565559	131565559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBC1D13	NM_018201	exon8	c.T574C	p.S192P	.	.	47	5	76	0	.	90
TBC1D13	54662	bcgsc.ca	37	9	131568589	131568589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBC1D13	NM_018201	exon11	c.A1136G	p.Q379R	.	.	11	3	28	0	.	90
TBC1D3P1-DHX40P1	653645	broad.mit.edu;bcgsc.ca	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	420	22	262	2	.	.
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58075593	58075593	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	71	9	48	0	.	.
TBCE	6905	bcgsc.ca	37	1	235590549	235590549	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBCE	NM_003193	exon6	c.T555C	p.N185N	.	.	53	4	34	0	.	90
TBL3	10607	ucsc.edu;bcgsc.ca	37	16	2027783	2027783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBL3	NM_006453	exon18	c.A1940G	p.Q647R	.	.	50	4	66	0	.	90
TBPL1	9519	ucsc.edu;bcgsc.ca	37	6	134308131	134308131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBPL1	NM_004865	exon7	c.G514A	p.E172K	.	.	37	4	69	0	.	90
TBX6	6911	bcgsc.ca	37	16	30100032	30100032	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TBX6	NM_004608	exon5	c.A750G	p.T250T	.	.	116	5	110	1	.	92
TCEA2	6919	bcgsc.ca	37	20	62701947	62701947	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCEA2	NM_003195	exon8	c.A778G	p.T260A	.	.	62	4	68	0	.	90
TCF3	6929	bcgsc.ca	37	19	1632403	1632403	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCF3	NM_003200	exon4	c.T147C	p.G49G	.	.	58	4	60	0	.	721
TCOF1	6949	bcgsc.ca	37	5	149755706	149755706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCOF1	NM_001135243	exon13	c.C1955A	p.A652E	.	.	110	5	111	0	.	155
TCOF1	6949	bcgsc.ca	37	5	149776113	149776113	+	Silent	SNP	G	G	A	rs114169102	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCOF1	NM_001135243	exon24	c.G4050A	p.S1350S	.	.	57	4	55	1	G|0.989;A|0.011	155
TCP1	6950	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160206479	160206479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCP1	NM_030752	exon5	c.C427G	p.L143V	.	.	49	15	73	0	.	153
TCTN2	79867	ucsc.edu;bcgsc.ca	37	12	124189231	124189231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TCTN2	NM_024809	exon15	c.A1765G	p.T589A	.	.	35	4	66	0	.	91
TDRD1	56165	bcgsc.ca	37	10	115947802	115947802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD1	NM_198795	exon2	c.A212G	p.E71G	.	.	104	5	137	0	.	90
TDRD1	56165	bcgsc.ca	37	10	115980371	115980371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD1	NM_198795	exon19	c.A2539G	p.R847G	.	.	87	4	99	0	.	90
TDRD7	23424	bcgsc.ca	37	9	100258096	100258096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD7	NM_014290	exon17	c.G3228T	p.L1076F	.	.	54	4	82	0	.	93
TDRD7	23424	ucsc.edu;bcgsc.ca	37	9	100232863	100232863	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TDRD7	NM_014290	exon9	c.T1653C	p.F551F	.	.	39	4	76	0	.	93
TEFM	79736	bcgsc.ca	37	17	29227492	29227492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_024683	exon3	c.A584G	p.Q195R	.	.	88	4	88	0	.	.
TET1	80312	bcgsc.ca	37	10	70441194	70441194	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TET1	NM_030625	exon9	c.A4863G	p.T1621T	.	.	62	5	67	0	.	663
TF	7018	bcgsc.ca	37	3	133486911	133486911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TF	NM_001063	exon13	c.A1525G	p.K509E	.	.	74	4	79	0	.	92
TF	7018	ucsc.edu	37	3	133495949	133495949	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TF	NM_001063	exon16	c.G1929T	p.S643S	.	.	37	4	31	1	.	92
TFAP2C	7022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	55212882	55212882	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TFAP2C	NM_003222	exon7	c.G1166A	p.C389Y	.	.	63	7	72	0	.	514
TFDP2	7029	bcgsc.ca	37	3	141678659	141678659	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TFDP2	NM_001178139	exon11	c.A908G	p.D303G	.	.	69	4	69	0	.	226
TGFB1I1	7041	bcgsc.ca	37	16	31484829	31484829	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TGFB1I1	NM_001042454	exon2	c.C81A	p.R27R	.	.	44	4	37	0	.	90
TGFBI	7045	bcgsc.ca	37	5	135388615	135388615	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TGFBI	NM_000358	exon8	c.C933A	p.I311I	.	.	70	4	72	1	.	26
TGFBR1	7046	bcgsc.ca	37	9	101904966	101904966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TGFBR1	NM_004612	exon5	c.G954A	p.M318I	.	.	45	4	106	0	.	954
THAP9	79725	bcgsc.ca	37	4	83838390	83838390	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THAP9	NM_024672	exon5	c.T1025C	p.V342A	.	.	52	4	87	0	.	156
THBS2	7058	bcgsc.ca	37	6	169637324	169637324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THBS2	NM_003247	exon10	c.G1418A	p.G473D	.	.	13	3	20	0	.	95
THBS3	7059	bcgsc.ca	37	1	155167422	155167422	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THBS3	NM_007112	exon20	c.T2331C	p.F777F	.	.	74	4	58	0	.	222
THNSL1	79896	bcgsc.ca	37	10	25313766	25313766	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THNSL1	NM_024838	exon3	c.T1614C	p.H538H	.	.	30	4	48	0	.	91
THOC2	57187	bcgsc.ca	37	X	122765689	122765689	+	Silent	SNP	C	C	A	rs1128221	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THOC2	NM_001081550	exon22	c.G2331T	p.L777L	.	.	70	4	79	0	.	133
THOC2	57187	bcgsc.ca	37	X	122766782	122766782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THOC2	NM_001081550	exon21	c.A2246G	p.Q749R	.	.	103	5	69	0	.	133
THOC5	8563	bcgsc.ca	37	22	29927926	29927926	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	THOC5	NM_001002878	exon9	c.G741T	p.L247L	.	.	61	4	86	0	.	585
TIRAP	114609	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	126162958	126162958	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TIRAP	NM_148910	exon5	c.A654G	p.L218L	.	.	20	5	25	0	.	523
TJP2	9414	ucsc.edu;bcgsc.ca	37	9	71849423	71849423	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TJP2	NM_001170416	exon12	c.A1833G	p.K611K	.	.	47	4	75	0	.	115
TLE3	7090	bcgsc.ca	37	15	70347597	70347597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TLE3	NM_005078	exon15	c.C1378A	p.P460T	.	.	20	3	28	1	.	522
TLR2	7097	bcgsc.ca	37	4	154624387	154624387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TLR2	NM_003264	exon3	c.A328G	p.N110D	.	.	61	4	102	0	.	523
TLR7	51284	bcgsc.ca	37	X	12905178	12905178	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TLR7	NM_016562	exon3	c.T1551C	p.S517S	.	.	77	4	63	0	.	564
TLR8	51311	bcgsc.ca	37	X	12939145	12939145	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TLR8	NM_138636	exon2	c.G1986A	p.L662L	.	.	59	4	78	0	.	629
TM9SF4	9777	bcgsc.ca	37	20	30732975	30732975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TM9SF4	NM_014742	exon7	c.A734G	p.E245G	.	.	65	4	68	0	.	514
TMC5	79838	bcgsc.ca	37	16	19481069	19481069	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMC5	NM_001105249	exon10	c.G1704T	p.L568L	.	.	91	5	80	1	.	91
TMC7	79905	bcgsc.ca	37	16	19049326	19049326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMC7	NM_024847	exon8	c.C1136A	p.A379E	.	.	133	7	165	1	.	93
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19049310	19049310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMC7	NM_024847	exon8	c.G1120T	p.G374W	.	.	161	85	177	0	.	93
TMEM117	84216	bcgsc.ca	37	12	44782070	44782070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM117	NM_032256	exon8	c.G1160T	p.G387V	.	.	80	6	58	0	.	90
TMEM120A	83862	ucsc.edu;bcgsc.ca	37	7	75621559	75621559	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	35	4	31	0	.	.
TMEM132B	114795	ucsc.edu;bcgsc.ca	37	12	126135429	126135429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM132B	NM_052907	exon7	c.A1829G	p.E610G	.	.	34	4	54	1	.	185
TMEM132E	124842	bcgsc.ca	37	17	32957053	32957053	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM132E	NM_207313	exon6	c.T1095C	p.I365I	.	.	72	5	61	0	.	68
TMEM139	135932	bcgsc.ca	37	7	142983868	142983868	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM139	NM_001242773	exon4	c.T597C	p.F199F	.	.	80	4	116	1	.	90
TMEM179B	374395	bcgsc.ca	37	11	62556854	62556854	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM179B	NM_199337	exon3	c.C375A	p.T125T	.	.	86	4	120	0	.	68
TMEM181	57583	ucsc.edu;bcgsc.ca	37	6	159005044	159005044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM181	NM_020823	exon4	c.T638C	p.L213P	.	.	32	4	80	0	.	70
TMEM200A	114801	ucsc.edu;bcgsc.ca	37	6	130762511	130762511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM200A	NM_001258277	exon3	c.T944C	p.L315P	.	.	42	4	82	1	.	23
TMEM220	388335	bcgsc.ca	37	17	10628422	10628422	+	Missense_Mutation	SNP	T	T	C	rs148509041	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM220	NM_001004313	exon4	c.A193G	p.I65V	.	.	55	4	96	1	T|0.993;C|0.007	90
TMEM260	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	57088308	57088308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_017799	exon11	c.C1286G	p.S429C	.	.	25	5	48	0	.	.
TMEM43	79188	bcgsc.ca	37	3	14170919	14170919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM43	NM_024334	exon2	c.G20T	p.S7I	.	.	59	4	77	1	.	91
TMEM60	85025	bcgsc.ca	37	7	77423685	77423685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMEM60	NM_032936	exon2	c.A6T	p.R2S	.	.	61	4	53	0	.	90
TMPO	7112	bcgsc.ca	37	12	98925618	98925618	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPO	NM_003276	exon3	c.565+2T>A	.	.	.	141	5	161	0	.	93
TMPRSS11B	132724	bcgsc.ca	37	4	69095033	69095033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPRSS11B	NM_182502	exon8	c.G888T	p.M296I	.	.	74	4	181	0	.	91
TMPRSS4	56649	bcgsc.ca	37	11	117973924	117973924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPRSS4	NM_019894	exon4	c.A266G	p.E89G	.	.	15	4	25	0	.	90
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111764780	111764780	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TMPRSS7	NM_001042575	exon4	c.G342A	p.V114V	.	.	322	117	372	0	.	70
TNFRSF1B	7133	bcgsc.ca	37	1	12252509	12252509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNFRSF1B	NM_001066	exon5	c.T479C	p.V160A	.	.	57	5	56	0	.	1085
TNFRSF4	7293	ucsc.edu;bcgsc.ca	37	1	1146981	1146981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNFRSF4	NM_003327	exon7	c.T788C	p.I263T	.	.	41	4	50	1	.	227
TNFSF18	8995	bcgsc.ca	37	1	173010713	173010713	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNFSF18	NM_005092	exon3	c.G394T	p.V132L	.	.	248	9	192	0	.	227
TNKS1BP1	85456	bcgsc.ca	37	11	57080417	57080417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1745G	p.P582R	.	.	255	13	78	0	.	91
TNKS1BP1	85456	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	57080662	57080662	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1500A	p.I500I	.	.	70	18	18	0	.	91
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080520	57080520	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1642G	p.P548A	.	.	137	25	48	1	.	91
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080675	57080675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1487T	p.P496L	.	.	65	15	17	0	.	91
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57080609	57080609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNKS1BP1	NM_033396	exon5	c.C1553T	p.S518F	.	.	85	21	28	0	.	91
TNPO1	3842	bcgsc.ca	37	5	72187636	72187636	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNPO1	NM_002270	exon15	c.1702-1G>T	.	.	.	88	5	73	0	.	228
TNRC6A	27327	bcgsc.ca	37	16	24801938	24801938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNRC6A	NM_014494	exon6	c.C1975A	p.Q659K	.	.	115	7	105	0	.	92
TNS1	7145	bcgsc.ca	37	2	218682888	218682888	+	Silent	SNP	G	G	T	rs150663283	alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TNS1	NM_022648	exon24	c.C3855A	p.S1285S	.	.	70	4	75	0	G|1.000;A|0.000	156
TOMM40L	84134	bcgsc.ca	37	1	161197522	161197522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TOMM40L	NM_032174	exon5	c.T373C	p.F125L	.	.	73	4	65	0	.	153
TOPAZ1	375337	bcgsc.ca	37	3	44351407	44351407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145030	exon16	c.T4231C	p.C1411R	.	.	188	6	146	1	.	.
TPCN2	219931	broad.mit.edu	37	11	68851461	68851461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TPCN2	NM_139075	exon19	c.C1738T	p.R580C	.	.	816	19	147	0	.	90
TPR	7175	broad.mit.edu	37	1	186315336	186315336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TPR	NM_003292	exon23	c.G3027A	p.M1009I	.	.	352	7	200	0	.	228
TPRN	286262	bcgsc.ca	37	9	140094037	140094037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TPRN	NM_001128228	exon1	c.A1127G	p.D376G	.	.	13	3	43	1	.	90
TPTE2	93492	bcgsc.ca	37	13	20067633	20067633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TPTE2	NM_199254	exon3	c.C20A	p.T7K	.	.	85	4	122	0	.	92
TRAF1	7185	bcgsc.ca	37	9	123673783	123673783	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRAF1	NM_005658	exon6	c.G714T	p.E238D	.	.	16	3	30	0	.	229
TRAF5	7188	ucsc.edu;bcgsc.ca	37	1	211545645	211545645	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRAF5	NM_004619	exon11	c.A1275G	p.T425T	.	.	73	5	50	3	.	661
TRAK1	22906	bcgsc.ca	37	3	42166969	42166969	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRAK1	NM_001265608	exon2	c.A149G	p.Q50R	.	.	70	4	68	0	.	91
TRANK1	9881	bcgsc.ca	37	3	36872512	36872512	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRANK1	NM_014831	exon21	c.G8430T	p.L2810L	.	.	144	6	149	0	.	24
TRAPPC10	7109	ucsc.edu	37	21	45452052	45452052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRAPPC10	NM_003274	exon2	c.A148G	p.R50G	.	.	39	4	73	0	.	92
TREML1	340205	bcgsc.ca	37	6	41119108	41119108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TREML1	NM_178174	exon3	c.A391G	p.T131A	.	.	77	4	47	1	.	153
TRHDE	29953	bcgsc.ca	37	12	72866962	72866962	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRHDE	NM_013381	exon5	c.1449+2T>A	.	.	.	198	6	215	0	.	93
TRIAP1	51499	bcgsc.ca	37	12	120882699	120882699	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIAP1	NM_016399	exon2	c.A207G	p.K69K	.	.	105	5	132	3	.	90
TRIL	9865	bcgsc.ca	37	7	28997081	28997081	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	86	4	82	0	.	.
TRIM33	51592	bcgsc.ca	37	1	115006061	115006061	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIM33	NM_033020	exon3	c.T763C	p.L255L	.	.	180	6	221	1	.	1351
TRIM44	54765	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	35684743	35684743	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIM44	NM_017583	exon1	c.G84T	p.G28G	.	.	25	9	17	0	.	227
TRIM6-TRIM34	445372	bcgsc.ca	37	11	5653923	5653923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIM6-TRIM34	NM_001003819	exon8	c.G1424A	p.R475Q	.	.	69	4	50	0	.	45
TRIO	7204	bcgsc.ca	37	5	14481343	14481343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIO	NM_007118	exon44	c.G6337T	p.D2113Y	.	.	43	4	37	0	.	562
TRIP13	9319	bcgsc.ca	37	5	917151	917151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIP13	NM_004237	exon13	c.T1232C	p.L411P	.	.	58	4	37	0	.	90
TRIP4	9325	bcgsc.ca	37	15	64698617	64698617	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIP4	NM_016213	exon6	c.T786A	p.A262A	.	.	52	4	50	0	.	188
TRIT1	54802	bcgsc.ca	37	1	40319718	40319718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRIT1	NM_017646	exon3	c.A338G	p.D113G	.	.	43	4	52	0	.	91
TRMT2B	79979	bcgsc.ca	37	X	100290637	100290637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRMT2B	NM_001167972	exon6	c.A574G	p.K192E	.	.	92	4	64	0	.	131
TRMT2B	79979	bcgsc.ca	37	X	100292989	100292989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRMT2B	NM_001167972	exon4	c.C355A	p.Q119K	.	.	114	5	101	1	.	131
TRMT61B	55006	bcgsc.ca	37	2	29074087	29074087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRMT61B	NM_017910	exon5	c.T1163C	p.V388A	.	.	78	4	94	2	.	90
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	3186326	3186329	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	AGTT	AGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRNT1	NM_182916	exon5	c.540_543del	p.180_181del	.	.	155	23	204	0	.	90
TRO	7216	bcgsc.ca	37	X	54950145	54950145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	TRO,NS,carcinoma,0	TRO	NM_016157	exon3	c.C1180A	p.L394M	.	.	63	4	78	0	.	131
TRPC1	7220	bcgsc.ca	37	3	142509926	142509926	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPC1	NM_001251845	exon8	c.C1363A	p.R455S	.	.	85	4	88	0	.	92
TRPC4	7223	bcgsc.ca	37	13	38211709	38211709	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPC4	NM_003306	exon11	c.A2280G	p.R760R	.	.	58	4	151	0	.	159
TRPC4	7223	bcgsc.ca	37	13	38320331	38320331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPC4	NM_003306	exon3	c.G640A	p.E214K	.	.	55	4	114	0	.	159
TRPS1	7227	bcgsc.ca	37	8	116616528	116616528	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPS1	NM_014112	exon4	c.G1668T	p.V556V	.	.	68	5	73	0	.	229
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335396	16335396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRPV2	NM_016113	exon12	c.A1771G	p.R591G	.	.	48	4	66	0	.	91
TRRAP	8295	bcgsc.ca	37	7	98498272	98498272	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon11	c.T826C	p.L276L	.	.	87	4	103	0	.	923
TRRAP	8295	bcgsc.ca	37	7	98547697	98547697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon37	c.G5125C	p.G1709R	.	.	59	5	79	0	.	923
TRRAP	8295	bcgsc.ca	37	7	98563383	98563383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon48	c.G7020A	p.M2340I	.	.	48	5	72	0	.	923
TRRAP	8295	ucsc.edu;bcgsc.ca	37	7	98562268	98562268	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TRRAP	NM_001244580	exon47	c.C6825A	p.L2275L	.	.	30	4	41	0	.	923
TSC1	7248	bcgsc.ca	37	9	135772816	135772816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSC1	NM_000368	exon21	c.A2807G	p.Q936R	.	.	83	6	199	0	.	1906
TSC1	7248	bcgsc.ca	37	9	135786437	135786437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSC1	NM_000368	exon11	c.G1093T	p.V365F	.	.	62	4	121	0	.	1906
TSC2	7249	ucsc.edu;bcgsc.ca	37	16	2136204	2136204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSC2	NM_000548	exon37	c.A4673G	p.E1558G	.	.	37	4	33	0	.	1908
TSHR	7253	bcgsc.ca	37	14	81609507	81609507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSHR	NM_000369	exon10	c.G1105A	p.E369K	.	.	76	4	141	0	.	1650
TSPEAR	54084	bcgsc.ca	37	21	45919744	45919744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSPEAR	NM_144991	exon12	c.C1932A	p.S644R	.	.	18	4	32	0	.	244
TSPYL6	388951	bcgsc.ca	37	2	54482449	54482449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSPYL6	NM_001003937	exon1	c.G840T	p.L280F	.	.	59	4	82	0	.	90
TSR1	55720	bcgsc.ca	37	17	2233820	2233820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSR1	NM_018128	exon10	c.C1759A	p.H587N	.	.	68	4	108	0	.	91
TSR1	55720	bcgsc.ca	37	17	2239367	2239367	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TSR1	NM_018128	exon2	c.T165C	p.H55H	.	.	65	4	104	2	.	91
TTC27	55622	bcgsc.ca	37	2	32927876	32927876	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC27	NM_017735	exon10	c.T1122C	p.C374C	.	.	192	6	220	0	.	90
TTC28	23331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28504014	28504014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001145418	exon7	c.C1819T	p.R607W	.	.	35	6	51	0	.	.
TTC3	7267	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	38532006	38532006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon29	c.C2998T	p.R1000C	.	.	26	6	43	0	.	590
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38538901	38538901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTC3	NM_001001894	exon33	c.A4385G	p.Q1462R	.	.	67	21	108	0	.	590
TTC40	54777	bcgsc.ca	37	10	134647600	134647600	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001200049	exon49	c.T6894C	p.D2298D	.	.	47	4	51	0	.	.
TTF2	8458	bcgsc.ca	37	1	117617575	117617575	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTF2	NM_003594	exon5	c.A369G	p.R123R	.	.	134	5	154	2	.	91
TTF2	8458	bcgsc.ca	37	1	117634005	117634005	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTF2	NM_003594	exon16	c.A2644G	p.R882G	.	.	67	4	59	0	.	91
TTF2	8458	ucsc.edu	37	1	117641478	117641478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTF2	NM_003594	exon22	c.C3293A	p.A1098D	.	.	42	4	58	0	.	91
TTI1	9675	bcgsc.ca	37	20	36641683	36641683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTI1	NM_014657	exon3	c.A536G	p.Q179R	.	.	74	4	68	1	.	94
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9870684	9870685	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTLL3	NM_001025930	exon10	c.1588_1589del	p.530_530del	.	.	36	15	50	0	.	585
TTLL4	9654	bcgsc.ca	37	2	219618895	219618895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTLL4	NM_014640	exon20	c.A3383G	p.E1128G	.	.	77	5	85	0	.	93
TTN	7273	bcgsc.ca	37	2	179418925	179418925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTN	NM_001267550	exon333	c.G88913A	p.G29638D	.	.	67	4	77	0	.	636
TTN	7273	bcgsc.ca	37	2	179486084	179486084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTN	NM_001267550	exon246	c.G45361A	p.E15121K	.	.	140	6	147	0	.	636
TTN	7273	bcgsc.ca	37	2	179593262	179593262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTN	NM_001267550	exon66	c.G19391A	p.G6464E	.	.	61	4	75	0	.	636
TTYH3	80727	ucsc.edu;bcgsc.ca	37	7	2695773	2695773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TTYH3	NM_025250	exon10	c.C1068A	p.N356K	.	.	65	7	66	0	.	90
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	191	18	232	21	G|0.998;A|0.002	90
TUBB4B	10383	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140137668	140137668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_006088	exon4	c.T998C	p.V333A	.	.	76	24	143	1	.	.
TUBGCP2	10844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135099037	135099037	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBGCP2	NM_001256617	exon13	c.G1902T	p.T634T	.	.	39	16	49	0	.	90
TUBGCP3	10426	bcgsc.ca	37	13	113173348	113173348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBGCP3	NM_006322	exon16	c.G1891A	p.G631S	.	.	135	5	192	0	.	90
TUBGCP4	27229	bcgsc.ca	37	15	43668713	43668713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TUBGCP4	NM_014444	exon3	c.T220C	p.S74P	.	.	86	4	96	0	.	93
TXLNB	167838	bcgsc.ca	37	6	139583752	139583752	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	TXLNB	NM_153235	exon5	c.G846A	p.L282L	.	.	76	4	207	2	.	91
UAP1	6675	bcgsc.ca	37	1	162536129	162536129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UAP1	NM_003115	exon2	c.G271A	p.E91K	.	.	101	5	76	0	.	230
UBALD1	124402	bcgsc.ca	37	16	4659917	4659917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_145253	exon3	c.G251A	p.R84H	.	.	79	5	71	0	.	.
UBE2Q1	55585	bcgsc.ca	37	1	154527902	154527902	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UBE2Q1	NM_017582	exon4	c.537+2T>A	.	.	.	68	4	46	0	.	226
UBE2V2	7336	bcgsc.ca	37	8	48955658	48955658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UBE2V2	NM_003350	exon2	c.G82T	p.D28Y	.	.	87	4	97	0	.	659
UBR1	197131	bcgsc.ca	37	15	43320028	43320028	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UBR1	NM_174916	exon23	c.2380-2A>G	.	.	.	102	4	78	0	.	91
UBR7	55148	bcgsc.ca	37	14	93685051	93685051	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UBR7	NM_175748	exon7	c.T780C	p.C260C	.	.	81	4	98	1	.	90
UCHL3	7347	bcgsc.ca	37	13	76178918	76178918	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UCHL3	NM_006002	exon8	c.A564G	p.P188P	.	.	65	4	108	0	.	522
UCP2	7351	bcgsc.ca	37	11	73686166	73686166	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UCP2	NM_003355	exon8	c.G816T	p.G272G	.	.	67	4	105	2	.	90
UGCG	7357	bcgsc.ca	37	9	114693636	114693636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UGCG	NM_003358	exon7	c.A823G	p.R275G	.	.	24	3	49	0	.	91
UGGT2	55757	bcgsc.ca	37	13	96529988	96529988	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UGGT2	NM_020121	exon28	c.A3351G	p.K1117K	.	.	59	4	60	0	.	92
UGT1A7	54577	bcgsc.ca	37	2	234590982	234590982	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UGT1A7	NM_019077	exon1	c.A399G	p.L133L	.	.	86	4	77	0	.	26
UGT2A1	10941	bcgsc.ca	37	4	70512935	70512935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UGT2A1	NM_001252274	exon2	c.A428G	p.K143R	.	.	72	4	127	0	.	92
UGT2A3	79799	bcgsc.ca	37	4	69816797	69816797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UGT2A3	NM_024743	exon1	c.C682A	p.H228N	.	.	105	5	152	0	.	92
ULBP2	80328	bcgsc.ca	37	6	150266685	150266685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ULBP2	NM_025217	exon2	c.A326G	p.Q109R	.	.	147	5	421	1	.	90
ULK1	8408	ucsc.edu	37	12	132400535	132400535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ULK1	NM_003565	exon19	c.T1709C	p.L570P	.	.	37	5	46	1	.	758
ULK2	9706	ucsc.edu;bcgsc.ca	37	17	19684355	19684355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ULK2	NM_001142610	exon24	c.T2702C	p.L901P	.	.	45	4	82	1	.	334
UNC79	57578	ucsc.edu;bcgsc.ca	37	14	94046510	94046510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_020818	exon19	c.G1918T	p.D640Y	.	.	46	4	68	1	.	.
UNCX	340260	bcgsc.ca	37	7	1275498	1275498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UNCX	NM_001080461	exon3	c.A481G	p.R161G	.	.	90	5	95	0	.	69
USH2A	7399	bcgsc.ca	37	1	216017660	216017660	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USH2A	NM_206933	exon46	c.T9234C	p.S3078S	.	.	65	4	32	0	.	115
USP14	9097	bcgsc.ca	37	18	166807	166807	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP14	NM_001037334	exon3	c.C183A	p.I61I	.	.	80	4	96	0	.	659
USP14	9097	ucsc.edu;bcgsc.ca	37	18	210405	210405	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP14	NM_005151	exon15	c.T1245C	p.C415C	.	.	48	4	100	0	.	659
USP15	9958	ucsc.edu;bcgsc.ca	37	12	62783237	62783237	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP15	NM_001252078	exon12	c.A1500G	p.G500G	.	.	58	6	55	0	.	1084
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17197365	17197365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP25	NM_013396	exon12	c.A1289G	p.Q430R	.	.	157	36	275	0	.	663
USP28	57646	bcgsc.ca	37	11	113675681	113675681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP28	NM_020886	exon20	c.G2488A	p.V830I	.	.	65	4	149	0	.	706
USP32P2	220594	bcgsc.ca	37	17	18416569	18416569	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	51	4	77	0	.	.
USP32P2	220594	bcgsc.ca	37	17	18416610	18416610	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	.	.	.	75	5	103	0	.	.
USP39	10713	bcgsc.ca	37	2	85852671	85852671	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP39	NM_001256725	exon5	c.A580G	p.K194E	.	.	46	6	62	0	.	658
USP4	7375	bcgsc.ca	37	3	49373015	49373015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP4	NM_199443	exon2	c.G116T	p.S39I	.	.	69	4	75	0	.	660
USP48	84196	ucsc.edu;bcgsc.ca	37	1	22050539	22050539	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP48	NM_032236	exon12	c.A1500G	p.E500E	.	.	46	4	50	0	.	659
USP49	25862	bcgsc.ca	37	6	41773440	41773440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP49	NM_018561	exon4	c.T1282C	p.F428L	.	.	116	5	64	0	.	523
USP53	54532	bcgsc.ca	37	4	120177442	120177442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP53	NM_019050	exon7	c.C414A	p.S138R	.	.	59	4	127	0	.	660
USP53	54532	bcgsc.ca	37	4	120213809	120213809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP53	NM_019050	exon18	c.T2665C	p.C889R	.	.	43	4	104	1	.	660
USP5	8078	ucsc.edu;bcgsc.ca	37	12	6970233	6970233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP5	NM_003481	exon12	c.G1461A	p.M487I	.	.	47	4	49	0	.	659
USP8	9101	bcgsc.ca	37	15	50784990	50784990	+	Missense_Mutation	SNP	T	T	C	rs146125856	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	USP8	NM_001128610	exon15	c.T2327C	p.L776P	.	.	105	50	93	5	T|0.992;C|0.008	658
UTP6	55813	bcgsc.ca	37	17	30211480	30211480	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	UTP6	NM_018428	exon10	c.G748T	p.D250Y	.	.	62	4	60	0	.	91
UVSSA	57654	ucsc.edu	37	4	1369157	1369157	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_020894	exon9	c.G1294T	p.E432X	.	.	45	5	46	0	.	.
VARS	7407	bcgsc.ca	37	6	31748797	31748797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VARS	NM_006295	exon22	c.A2648G	p.Q883R	.	.	80	4	48	0	.	93
VAV1	7409	ucsc.edu;bcgsc.ca	37	19	6825416	6825416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	VAV1,NS,malignant_melanoma,-1	VAV1	NM_005428	exon8	c.A826G	p.R276G	.	.	35	4	34	0	.	1276
VEZF1	7716	bcgsc.ca	37	17	56052262	56052262	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VEZF1	NM_007146	exon7	c.1139-1G>T	.	.	.	127	5	73	0	.	136
VEZT	55591	bcgsc.ca	37	12	95681522	95681522	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VEZT	NM_017599	exon9	c.C1411T	p.L471L	.	.	79	4	63	0	.	23
VGLL3	389136	bcgsc.ca	37	3	87027767	87027767	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VGLL3	NM_016206	exon2	c.A312G	p.E104E	.	.	50	5	72	0	.	90
VHLL	391104	bcgsc.ca	37	1	156268618	156268618	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VHLL	NM_001004319	exon1	c.T363C	p.S121S	.	.	147	5	88	0	.	69
VNN3	55350	bcgsc.ca	37	6	133048148	133048148	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VNN3	.	.	.	.	.	.	59	5	119	0	.	90
VPS13A	23230	bcgsc.ca	37	9	79959997	79959997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS13A	NM_001018038	exon52	c.G7228A	p.G2410R	.	.	63	4	87	0	.	161
VPS13A	23230	bcgsc.ca	37	9	79975498	79975498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS13A	NM_001018038	exon59	c.G8152T	p.G2718W	.	.	90	4	131	0	.	161
VPS13B	157680	bcgsc.ca	37	8	100155371	100155371	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS13B	NM_152564	exon13	c.A1821G	p.E607E	.	.	273	9	279	1	.	301
VPS13D	55187	bcgsc.ca	37	1	12336741	12336741	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS13D	NM_015378	exon19	c.G3096A	p.T1032T	.	.	48	4	62	0	.	95
VPS26A	9559	bcgsc.ca	37	10	70916766	70916766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS26A	NM_001035260	exon4	c.T233C	p.L78P	.	.	130	5	97	0	.	90
VPS29	51699	bcgsc.ca	37	12	110933838	110933838	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS29	NM_057180	exon3	c.T186C	p.I62I	.	.	60	4	81	0	.	90
VPS35	55737	bcgsc.ca	37	16	46714722	46714722	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS35	NM_018206	exon5	c.C367T	p.P123S	.	.	315	8	148	0	.	90
VPS39	23339	bcgsc.ca	37	15	42453890	42453890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS39	NM_015289	exon24	c.A2542G	p.I848V	.	.	80	4	75	0	.	229
VPS39	23339	bcgsc.ca	37	15	42462014	42462014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS39	NM_015289	exon12	c.A1141G	p.R381G	.	.	82	4	89	0	.	229
VPS54	51542	bcgsc.ca	37	2	64209013	64209013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS54	NM_016516	exon3	c.C145T	p.H49Y	.	.	97	6	119	1	.	90
VPS8	23355	bcgsc.ca	37	3	184542501	184542501	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS8	NM_001009921	exon2	c.C81T	p.F27F	.	.	120	6	154	0	.	91
VPS8	23355	bcgsc.ca	37	3	184570339	184570339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VPS8	NM_001009921	exon10	c.T805C	p.F269L	.	.	67	4	73	0	.	91
VRK3	51231	bcgsc.ca	37	19	50491723	50491723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VRK3	NM_016440	exon12	c.A1123G	p.S375G	.	.	51	4	36	0	.	359
VWA3A	146177	bcgsc.ca	37	16	22108969	22108969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VWA3A	NM_173615	exon3	c.G178T	p.D60Y	.	.	85	5	81	0	.	1
VWA3B	200403	bcgsc.ca	37	2	98709584	98709584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VWA3B	NM_144992	exon2	c.T29C	p.I10T	.	.	86	6	75	1	.	139
VWA3B	200403	bcgsc.ca	37	2	98779370	98779370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	VWA3B	NM_144992	exon8	c.A1045G	p.S349G	.	.	54	4	39	0	.	139
VWA7	80737	bcgsc.ca	37	6	31744411	31744411	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_025258	exon2	c.C146A	p.T49N	.	.	200	7	98	1	.	.
WBP2	23558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73851333	73851333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WBP2	NM_012478	exon1	c.A46G	p.N16D	.	.	105	98	85	0	.	90
WDFY3	23001	bcgsc.ca	37	4	85701351	85701351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDFY3	NM_014991	exon26	c.A4275G	p.E1425E	.	.	60	4	70	0	.	93
WDPCP	51057	bcgsc.ca	37	2	63631651	63631651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDPCP	NM_015910	exon10	c.C967T	p.R323W	.	.	103	5	128	0	.	91
WDR11	55717	bcgsc.ca	37	10	122622269	122622269	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR11	NM_018117	exon5	c.T549C	p.V183V	.	.	84	4	101	0	.	226
WDR37	22884	bcgsc.ca	37	10	1130409	1130409	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR37	NM_014023	exon6	c.C463T	p.H155Y	.	.	74	4	70	0	.	90
WDR41	55255	bcgsc.ca	37	5	76758958	76758958	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR41	NM_018268	exon4	c.C310A	p.Q104K	.	.	180	5	125	0	.	90
WDR52	55779	bcgsc.ca	37	3	113128150	113128150	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR52	NM_001164496	exon7	c.T693C	p.Y231Y	.	.	47	4	45	0	.	90
WDR52	55779	ucsc.edu;bcgsc.ca	37	3	113152468	113152468	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR52	NM_001164496	exon2	c.T44C	p.V15A	.	.	40	4	63	0	.	90
WDR75	84128	bcgsc.ca	37	2	190306235	190306235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR75	NM_032168	exon1	c.A17G	p.N6S	.	.	177	7	153	1	.	92
WDR93	56964	bcgsc.ca	37	15	90270421	90270421	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WDR93	NM_020212	exon9	c.C914A	p.A305E	.	.	59	4	68	0	.	24
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1957733	1957733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WHSC1	NM_133335	exon15	c.A2699G	p.H900R	.	.	89	14	110	0	.	664
WIPI2	26100	ucsc.edu	37	7	5266851	5266851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WIPI2	NM_015610	exon10	c.A889G	p.K297E	.	.	25	1	38	0	.	516
WNK1	65125	bcgsc.ca	37	12	993300	993300	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WNK1	NM_001184985	exon18	c.T4515C	p.S1505S	.	.	62	4	87	0	.	916
WNK1	65125	bcgsc.ca	37	12	994694	994694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WNK1	NM_001184985	exon19	c.T5504C	p.V1835A	.	.	55	4	74	0	.	916
WNK3	65267	bcgsc.ca	37	X	54259425	54259425	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WNK3	NM_020922	exon21	c.A4657G	p.T1553A	.	.	79	4	84	0	.	441
WSB2	55884	bcgsc.ca	37	12	118474179	118474179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	WSB2	NM_018639	exon6	c.G797T	p.W266L	.	.	72	4	96	1	.	91
XDH	7498	bcgsc.ca	37	2	31570430	31570430	+	Silent	SNP	C	C	T	rs111951522	byfrequency	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XDH	NM_000379	exon29	c.G3234A	p.T1078T	.	.	130	5	171	1	C|0.500;T|0.500	158
XDH	7498	bcgsc.ca	37	2	31602813	31602813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XDH	NM_000379	exon13	c.A1162G	p.T388A	.	.	51	4	63	0	.	158
XIRP2	129446	bcgsc.ca	37	2	168074709	168074709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XIRP2	NM_001199143	exon6	c.G856A	p.G286S	.	.	100	5	98	0	.	104
XIRP2	129446	bcgsc.ca	37	2	168102150	168102150	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XIRP2	NM_152381	exon9	c.C4248T	p.G1416G	.	.	144	5	167	0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168097234	168097234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	XIRP2	NM_001199143	exon8	c.G1129T	p.V377F	.	.	164	71	184	0	.	104
YES1	7525	bcgsc.ca	37	18	743343	743343	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon7	c.C797A	p.A266E	.	.	57	4	55	0	.	547
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	742994	742994	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon8	c.A984G	p.R328R	.	.	132	69	184	0	.	547
YES1	7525	ucsc.edu;bcgsc.ca	37	18	747938	747938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YES1	NM_005433	exon4	c.A452G	p.D151G	.	.	37	4	58	0	.	547
YLPM1	56252	bcgsc.ca	37	14	75248071	75248071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YLPM1	NM_019589	exon4	c.A1325G	p.E442G	.	.	49	4	56	0	.	71
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207224106	207224106	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YOD1	NM_018566	exon1	c.C270T	p.L90L	.	.	123	11	68	0	.	522
YTHDC2	64848	bcgsc.ca	37	5	112917235	112917235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	YTHDC2	NM_022828	exon25	c.T3476C	p.V1159A	.	.	137	5	115	0	.	92
ZAN	7455	bcgsc.ca	37	7	100382292	100382292	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZAN	.	.	.	.	.	.	49	4	66	0	.	142
ZAN	7455	ucsc.edu;bcgsc.ca	37	7	100391477	100391477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZAN	.	.	.	.	.	.	25	4	39	0	.	142
ZBBX	79740	bcgsc.ca	37	3	167077764	167077764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBBX	NM_024687	exon8	c.C326T	p.P109L	.	.	91	4	88	0	.	92
ZBBX	79740	bcgsc.ca	37	3	167077766	167077766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBBX	NM_024687	exon8	c.G324T	p.E108D	.	.	90	4	85	0	.	92
ZBED1	9189	bcgsc.ca	37	X	2406715	2406715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBED1	NM_001171135	exon2	c.C2046A	p.S682R	.	.	56	4	113	0	.	40
ZBTB39	9880	bcgsc.ca	37	12	57396748	57396748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBTB39	NM_014830	exon2	c.C1954A	p.L652I	.	.	80	5	92	1	.	135
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125674263	125674263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZBTB6	NM_006626	exon2	c.A89G	p.N30S	.	.	65	56	112	0	.	90
ZC3H12C	85463	bcgsc.ca	37	11	110034092	110034092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZC3H12C	NM_033390	exon5	c.C1243A	p.P415T	.	.	45	5	63	0	.	68
ZC3H13	23091	bcgsc.ca	37	13	46559619	46559619	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZC3H13	NM_015070	exon10	c.A1533G	p.E511E	.	.	68	5	107	0	.	92
ZC3H15	55854	bcgsc.ca	37	2	187366083	187366083	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZC3H15	NM_018471	exon4	c.T373C	p.L125L	.	.	87	4	88	0	.	91
ZC3H4	23211	bcgsc.ca	37	19	47588351	47588351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZC3H4	NM_015168	exon8	c.A1069G	p.M357V	.	.	139	5	133	0	.	74
ZC3HC1	51530	bcgsc.ca	37	7	129658541	129658541	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZC3HC1	NM_016478	exon10	c.G1472A	p.R491Q	.	.	76	4	96	0	.	90
ZCCHC6	79670	ucsc.edu;bcgsc.ca	37	9	88932158	88932158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZCCHC6	NM_024617	exon17	c.G3250T	p.A1084S	.	.	37	4	37	0	.	92
ZCWPW1	55063	bcgsc.ca	37	7	100016781	100016781	+	Missense_Mutation	SNP	T	T	A	rs141450215	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZCWPW1	NM_001258008	exon5	c.A314T	p.E105V	.	.	55	4	109	0	T|0.994;C|0.006	90
ZDHHC1	29800	bcgsc.ca	37	16	67432775	67432775	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZDHHC1	NM_013304	exon6	c.C603T	p.F201F	.	.	37	4	69	0	.	90
ZDHHC15	158866	bcgsc.ca	37	X	74648981	74648981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZDHHC15	NM_144969	exon7	c.G535T	p.A179S	.	.	130	5	163	0	.	132
ZDHHC16	84287	bcgsc.ca	37	10	99211919	99211919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZDHHC16	NM_198044	exon3	c.A316G	p.I106V	.	.	71	4	65	0	.	91
ZDHHC17	23390	bcgsc.ca	37	12	77235810	77235810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_015336	exon11	c.C1190T	p.A397V	.	.	107	6	106	0	.	.
ZFAND1	79752	bcgsc.ca	37	8	82627289	82627289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFAND1	NM_001170796	exon4	c.A199G	p.K67E	.	.	158	5	112	0	.	91
ZFHX4	79776	bcgsc.ca	37	8	77618841	77618841	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFHX4	NM_024721	exon2	c.G2518T	p.A840S	.	.	62	4	73	0	.	98
ZFHX4	79776	ucsc.edu	37	8	77767166	77767166	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFHX4	NM_024721	exon10	c.C8009T	p.P2670L	.	.	40	4	44	0	.	98
ZFP106	64397	ucsc.edu;bcgsc.ca	37	15	42720252	42720252	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFP106	NM_022473	exon12	c.A4893T	p.G1631G	.	.	43	4	48	0	.	515
ZFP69B	65243	bcgsc.ca	37	1	40928864	40928864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_023070	exon5	c.T1208C	p.I403T	.	.	64	5	128	0	.	.
ZFYVE28	57732	ucsc.edu;bcgsc.ca	37	4	2275874	2275874	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZFYVE28	NM_020972	exon9	c.T2121C	p.A707A	.	.	41	5	53	0	.	93
ZHX3	23051	bcgsc.ca	37	20	39833096	39833096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZHX3	NM_015035	exon3	c.G461T	p.S154I	.	.	72	4	79	0	.	93
ZIK1	284307	bcgsc.ca	37	19	58101456	58101456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZIK1	NM_001010879	exon4	c.G277A	p.G93S	.	.	82	4	88	0	.	91
ZKSCAN8	7745	bcgsc.ca	37	6	28117325	28117325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_006298	exon3	c.C482A	p.P161Q	.	.	150	5	74	1	.	.
ZMYM2	7750	bcgsc.ca	37	13	20601341	20601341	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZMYM2	NM_003453	exon10	c.1736-2A>G	.	.	.	95	5	140	0	.	685
ZNF131	7690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	43161948	43161948	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF131	NM_003432	exon6	c.T867C	p.T289T	.	.	145	78	169	0	.	90
ZNF132	7691	bcgsc.ca	37	19	58948504	58948504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF132	NM_003433	exon2	c.T142C	p.S48P	.	.	72	5	66	1	.	92
ZNF136	7695	bcgsc.ca	37	19	12297560	12297560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF136	NM_003437	exon4	c.G367T	p.D123Y	.	.	60	4	101	0	.	92
ZNF182	7569	bcgsc.ca	37	X	47837004	47837004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF182	NM_006962	exon7	c.A482G	p.E161G	.	.	77	4	107	1	.	132
ZNF212	7988	bcgsc.ca	37	7	148947268	148947268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF212	NM_012256	exon2	c.T43C	p.S15P	.	.	70	6	76	0	.	91
ZNF223	7766	bcgsc.ca	37	19	44570396	44570396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF223	NM_013361	exon5	c.T415C	p.S139P	.	.	91	4	127	0	.	91
ZNF229	7772	bcgsc.ca	37	19	44933045	44933045	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF229	NM_014518	exon6	c.C1911T	p.F637F	.	.	94	4	88	0	.	94
ZNF254	9534	bcgsc.ca	37	19	24288783	24288783	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF254	NM_203282	exon2	c.G72A	p.L24L	.	.	270	7	163	0	.	90
ZNF2	7549	bcgsc.ca	37	2	95845942	95845942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF2	NM_021088	exon4	c.A199G	p.K67E	.	.	107	5	97	1	.	90
ZNF320	162967	bcgsc.ca	37	19	53384666	53384666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF320	NM_207333	exon4	c.G713T	p.S238I	.	.	60	5	58	0	.	91
ZNF33A	7581	bcgsc.ca	37	10	38345116	38345116	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF33A	NM_006954	exon5	c.G2064T	p.T688T	.	.	76	4	82	0	.	93
ZNF365	22891	bcgsc.ca	37	10	64382958	64382958	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF365	NM_199451	exon5	c.C1077T	p.A359A	.	.	126	6	144	0	.	92
ZNF440	126070	bcgsc.ca	37	19	11943415	11943415	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF440	NM_152357	exon4	c.G1424T	p.R475I	.	.	46	4	57	0	.	68
ZNF442	79973	bcgsc.ca	37	19	12461307	12461307	+	Silent	SNP	C	C	T	rs149099428	byfrequency;alternate_allele	TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF442	NM_030824	exon6	c.G1092A	p.L364L	.	.	58	4	110	0	C|0.999;A|0.001	587
ZNF460	10794	bcgsc.ca	37	19	57802890	57802890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF460	NM_006635	exon3	c.C981A	p.F327L	.	.	74	4	90	0	.	90
ZNF462	58499	bcgsc.ca	37	9	109689831	109689831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF462	NM_021224	exon3	c.A3638G	p.Q1213R	.	.	20	3	44	0	.	95
ZNF467	168544	bcgsc.ca	37	7	149467602	149467602	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF467	NM_207336	exon3	c.C78T	p.P26P	.	.	13	3	34	0	.	90
ZNF484	83744	bcgsc.ca	37	9	95610744	95610744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF484	NM_001261458	exon4	c.G331T	p.D111Y	.	.	63	4	111	0	.	90
ZNF507	22847	bcgsc.ca	37	19	32873839	32873839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF507	NM_001136156	exon7	c.G2712A	p.M904I	.	.	78	4	100	0	.	230
ZNF516	9658	bcgsc.ca	37	18	74092179	74092179	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF516	NM_014643	exon4	c.G1891A	p.G631R	.	.	71	4	115	0	.	69
ZNF530	348327	bcgsc.ca	37	19	58117743	58117743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF530	NM_020880	exon3	c.C850A	p.Q284K	.	.	54	4	69	0	.	90
ZNF534	147658	ucsc.edu;bcgsc.ca	37	19	52941840	52941840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF534	NM_001143939	exon4	c.A1166G	p.H389R	.	.	41	4	58	0	.	68
ZNF540	163255	bcgsc.ca	37	19	38102617	38102617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF540	NM_152606	exon5	c.T436C	p.S146P	.	.	138	5	157	0	.	153
ZNF544	27300	bcgsc.ca	37	19	58757720	58757720	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF544	NM_014480	exon5	c.A87G	p.E29E	.	.	90	4	78	0	.	91
ZNF562	54811	bcgsc.ca	37	19	9764158	9764158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF562	NM_001130032	exon6	c.T748C	p.C250R	.	.	81	4	111	0	.	90
ZNF577	84765	bcgsc.ca	37	19	52375858	52375858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF577	NM_032679	exon7	c.T1385C	p.L462P	.	.	72	4	76	0	.	91
ZNF577	84765	bcgsc.ca	37	19	52376885	52376885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF577	NM_032679	exon7	c.C358A	p.H120N	.	.	108	5	91	0	.	91
ZNF577	84765	ucsc.edu;bcgsc.ca	37	19	52375795	52375795	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF577	NM_032679	exon7	c.T1448A	p.V483E	.	.	38	5	43	0	.	91
ZNF587	84914	bcgsc.ca	37	19	58371357	58371357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF587	NM_032828	exon3	c.G1577A	p.G526E	.	.	177	7	217	1	.	90
ZNF600	162966	bcgsc.ca	37	19	53270967	53270967	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF600	NM_198457	exon3	c.A42G	p.E14E	.	.	82	4	101	0	.	90
ZNF606	80095	bcgsc.ca	37	19	58490883	58490883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF606	NM_025027	exon7	c.C1165A	p.Q389K	.	.	87	4	70	1	.	92
ZNF614	80110	bcgsc.ca	37	19	52520088	52520088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF614	NM_025040	exon5	c.A763G	p.T255A	.	.	146	5	141	0	.	95
ZNF622	90441	bcgsc.ca	37	5	16465394	16465394	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF622	NM_033414	exon1	c.C381A	p.A127A	.	.	65	4	90	1	.	91
ZNF645	158506	bcgsc.ca	37	X	22291630	22291630	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF645	NM_152577	exon1	c.G522A	p.R174R	.	.	70	4	70	0	.	131
ZNF646	9726	ucsc.edu;bcgsc.ca	37	16	31091072	31091072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF646	NM_014699	exon2	c.G3427A	p.G1143R	.	.	34	4	38	0	.	153
ZNF671	79891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58232430	58232430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF671	NM_024833	exon4	c.G1024A	p.E342K	.	.	34	6	48	0	.	91
ZNF684	127396	bcgsc.ca	37	1	41013026	41013026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF684	NM_152373	exon5	c.G1031T	p.R344I	.	.	45	4	67	0	.	90
ZNF69	7620	ucsc.edu;bcgsc.ca	37	19	11998759	11998759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF69	NM_021915	exon1	c.G21T	p.R7S	.	.	37	4	40	0	.	91
ZNF699	374879	bcgsc.ca	37	19	9406445	9406445	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF699	NM_198535	exon5	c.C1635T	p.A545A	.	.	48	4	68	0	.	68
ZNF700	90592	bcgsc.ca	37	19	12058381	12058381	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF700	NM_001271848	exon3	c.A252G	p.R84R	.	.	167	6	236	1	.	90
ZNF70	7621	bcgsc.ca	37	22	24086962	24086962	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF70	NM_021916	exon2	c.A366G	p.R122R	.	.	133	5	153	0	.	92
ZNF772	400720	bcgsc.ca	37	19	57985508	57985508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF772	NM_001024596	exon5	c.A604G	p.S202G	.	.	154	5	191	0	.	90
ZNF774	342132	bcgsc.ca	37	15	90904449	90904449	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF774	NM_001004309	exon4	c.T1386A	p.S462R	.	.	77	4	96	0	.	90
ZNF781	163115	bcgsc.ca	37	19	38160348	38160348	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF781	NM_152605	exon4	c.G702T	p.V234V	.	.	43	4	44	0	.	90
ZNF793	390927	bcgsc.ca	37	19	38028451	38028451	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF793	NM_001013659	exon8	c.C891T	p.H297H	.	.	61	4	52	0	.	68
ZNF81	347344	bcgsc.ca	37	X	47775109	47775109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF81	NM_007137	exon5	c.A1064G	p.E355G	.	.	63	4	79	0	.	130
ZNF81	347344	ucsc.edu	37	X	47747454	47747454	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF81	NM_007137	exon3	c.A111G	p.Q37Q	.	.	50	4	62	0	.	130
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	192	54	101	2	.	.
ZNF827	152485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	146859553	146859553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF827	NM_178835	exon1	c.A7T	p.R3W	.	.	96	68	160	0	.	22
ZNF829	374899	bcgsc.ca	37	19	37398857	37398857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF829	NM_001171979	exon5	c.G536T	p.R179I	.	.	95	5	89	0	.	90
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	57767023	57767023	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF831	NM_178457	exon1	c.C949A	p.R317R	.	.	16	10	19	0	.	126
ZNF839	55778	bcgsc.ca	37	14	102808312	102808312	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF839	NM_018335	exon8	c.G2580A	p.L860L	.	.	56	4	108	0	.	91
ZNF860	344787	bcgsc.ca	37	3	32031296	32031296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZNF860	NM_001137674	exon2	c.G725T	p.S242I	.	.	123	5	177	1	.	1
ZP1	22917	bcgsc.ca	37	11	60637144	60637144	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZP1	NM_207341	exon3	c.C453A	p.P151P	.	.	66	4	100	0	.	90
ZPBP	11055	bcgsc.ca	37	7	50097729	50097729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZPBP	NM_007009	exon4	c.C343A	p.R115S	.	.	73	4	100	2	.	90
ZPLD1	131368	bcgsc.ca	37	3	102183062	102183062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZPLD1	NM_175056	exon7	c.C776A	p.P259Q	.	.	129	5	165	1	.	72
ZRANB2	9406	bcgsc.ca	37	1	71536639	71536639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZRANB2	NM_203350	exon7	c.T554C	p.L185P	.	.	50	4	77	1	.	92
ZSWIM8	23053	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75548453	75548453	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	NM_015037	exon2	c.G234A	p.E78E	.	.	44	6	58	0	.	.
ZWILCH	55055	bcgsc.ca	37	15	66821237	66821237	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZWILCH	NM_017975	exon11	c.T1017C	p.L339L	.	.	134	5	128	0	.	91
ZZEF1	23140	bcgsc.ca	37	17	3989004	3989004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	ZZEF1	NM_015113	exon16	c.C2606T	p.P869L	.	.	66	4	114	0	.	93
CHEK2	11200	broad.mit.edu	37	22	29091840	29091841	+	Missense_Mutation	DNP	TG	TG	CA	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TG	TG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	p.K416E	.	.	.	.	.	.	.	
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43274045	43274046	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-G3-A25S-01A-11D-A16V-10	TCGA-G3-A25S-10A-01D-A16V-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c05adc19-2e01-4712-a35a-69eee4d40998	084d16c3-f0e8-4cc5-b2a9-cb055fd6ebe5	.	.	.	.	.	p.K136V	.	.	.	.	.	.	.	
