Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAK1	22848	bcgsc.ca	37	2	69754351	69754351	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AAK1	NM_014911	exon9	c.A972T	p.V324V	.	.	96	5	100	0	.	333
AASS	10157	bcgsc.ca	37	7	121726087	121726087	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AASS	NM_005763	exon19	c.G2163A	p.L721L	.	.	88	4	49	0	.	92
ABCA1	19	ucsc.edu;bcgsc.ca	37	9	107576476	107576476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA1	NM_005502	exon27	c.T3824C	p.F1275S	.	.	20	4	31	0	.	1016
ABCA12	26154	bcgsc.ca	37	2	215891630	215891630	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA12	NM_173076	exon10	c.T1094C	p.L365P	.	.	133	5	118	0	.	99
ABCA13	154664	bcgsc.ca	37	7	48313715	48313715	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA13	NM_152701	exon17	c.T4452C	p.P1484P	.	.	93	5	80	0	.	521
ABCA3	21	bcgsc.ca	37	16	2327627	2327627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA3	NM_001089	exon32	c.C4954A	p.L1652M	.	.	73	4	68	0	.	1015
ABCA4	24	bcgsc.ca	37	1	94480231	94480231	+	Silent	SNP	G	G	A	rs61750572	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA4	NM_000350	exon38	c.C5328T	p.P1776P	.	.	51	4	49	0	.	162
ABCA5	23461	bcgsc.ca	37	17	67252296	67252296	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCA5	NM_172232	exon30	c.3858+2T>A	.	.	.	88	5	86	0	.	93
ABCB10	23456	ucsc.edu;bcgsc.ca	37	1	229666102	229666102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCB10	NM_012089	exon8	c.G1489A	p.V497M	.	.	49	5	58	0	.	153
ABCB6	10058	bcgsc.ca	37	2	220078347	220078347	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCB6	NM_005689	exon10	c.G1620T	p.L540L	.	.	53	5	49	0	.	153
ABCD1	215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	152991039	152991039	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABCD1	NM_000033	exon1	c.C318T	p.F106F	.	.	25	8	47	0	.	130
ABHD13	84945	bcgsc.ca	37	13	108881621	108881621	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ABHD13	NM_032859	exon2	c.G55T	p.A19S	.	.	154	6	196	0	.	93
ACACA	31	bcgsc.ca	37	17	35602029	35602029	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACACA	NM_198834	exon20	c.A2562G	p.K854K	.	.	68	5	61	0	.	154
ACBD5	91452	bcgsc.ca	37	10	27506922	27506922	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACBD5	NM_145698	exon7	c.T816C	p.V272V	.	.	84	5	67	0	.	90
ACE	1636	bcgsc.ca	37	17	61555339	61555339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACE	NM_000789	exon2	c.G297T	p.Q99H	.	.	84	5	119	0	.	94
ACE2	59272	bcgsc.ca	37	X	15613059	15613059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACE2	NM_021804	exon3	c.T254C	p.L85P	.	.	57	4	35	0	.	133
ACOX2	8309	ucsc.edu;bcgsc.ca	37	3	58494706	58494706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACOX2	NM_003500	exon14	c.T1897C	p.C633R	.	.	41	4	50	0	.	90
ACRV1	56	bcgsc.ca	37	11	125547856	125547856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACRV1	NM_001612	exon2	c.T389C	p.L130S	.	.	85	4	64	0	.	90
ACSS2	55902	bcgsc.ca	37	20	33509366	33509366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACSS2	NM_001076552	exon13	c.C1469T	p.P490L	.	.	70	5	36	0	.	226
ACTR1B	10120	ucsc.edu	37	2	98274714	98274714	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACTR1B	NM_005735	exon7	c.C723A	p.Y241X	.	.	36	4	43	0	.	91
ACTRT1	139741	bcgsc.ca	37	X	127185966	127185966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ACTRT1	NM_138289	exon1	c.A220G	p.I74V	.	.	76	4	101	0	.	133
ADAM19	8728	bcgsc.ca	37	5	156921768	156921768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAM19	NM_033274	exon15	c.G1630A	p.V544M	.	.	56	4	36	0	.	294
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77328866	77328866	+	Missense_Mutation	SNP	T	T	C	rs74584252	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS18	NM_199355	exon19	c.A2960G	p.N987S	.	.	50	4	38	0	.	1036
ADAMTS20	80070	bcgsc.ca	37	12	43769240	43769240	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS20	NM_025003	exon36	c.T5388C	p.A1796A	.	.	101	4	82	0	.	795
ADAMTS20	80070	bcgsc.ca	37	12	43823439	43823439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS20	NM_025003	exon24	c.G3470A	p.R1157Q	.	.	58	4	37	0	.	795
ADAMTS3	9508	bcgsc.ca	37	4	73149268	73149268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTS3	NM_014243	exon22	c.C3203A	p.T1068N	.	.	57	5	57	0	.	651
ADAMTSL3	57188	bcgsc.ca	37	15	84506878	84506878	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADAMTSL3	NM_207517	exon7	c.A638T	p.K213M	.	.	17	3	25	0	.	1153
ADCY1	107	bcgsc.ca	37	7	45725759	45725759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADCY1	NM_021116	exon13	c.G2272T	p.G758W	.	.	63	6	52	0	.	95
ADCY6	112	bcgsc.ca	37	12	49171458	49171458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADCY6	NM_020983	exon4	c.A1076G	p.N359S	.	.	184	6	143	0	.	90
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	214	17	258	14	.	227
ADIPOR1	51094	bcgsc.ca	37	1	202911176	202911176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADIPOR1	NM_015999	exon7	c.T976C	p.F326L	.	.	46	4	52	0	.	90
ADRB1	153	ucsc.edu	37	10	115804286	115804286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ADRB1	NM_000684	exon1	c.A395G	p.E132G	.	.	48	4	130	1	.	658
AFG3L2	10939	hgsc.bcm.edu	37	18	12329718	12329718	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2240delC	p.P747fs	.	.	88	0	91	0	.	90
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	12329717	12329717	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.2241delC	p.P747fs	.	.	86	31	90	0	.	90
AFG3L2	10939	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	12329714	12329714	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFG3L2	NM_006796	exon17	c.A2244G	p.R748R	.	.	84	36	91	0	.	90
AFTPH	54812	bcgsc.ca	37	2	64779477	64779477	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AFTPH	NM_017657	exon2	c.A869G	p.D290G	.	.	70	5	59	0	.	70
AGBL3	340351	bcgsc.ca	37	7	134717652	134717652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_178563	exon6	c.A476G	p.K159R	.	.	101	6	43	0	.	.
AGMO	392636	ucsc.edu;bcgsc.ca	37	7	15433746	15433746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGMO	NM_001004320	exon6	c.T668C	p.V223A	.	.	39	4	46	0	.	69
AGO1	26523	bcgsc.ca	37	1	36358852	36358852	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_012199	exon4	c.T485A	p.V162E	.	.	60	5	76	0	.	.
AGO1	26523	bcgsc.ca	37	1	36383269	36383269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_012199	exon16	c.T2104A	p.Y702N	.	.	75	4	54	0	.	.
AGPAT3	56894	ucsc.edu;bcgsc.ca	37	21	45397947	45397947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT3	NM_001037553	exon7	c.T788C	p.I263T	.	.	34	4	46	0	.	90
AGPAT6	137964	ucsc.edu;bcgsc.ca	37	8	41469488	41469488	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGPAT6	NM_178819	exon6	c.A678G	p.T226T	.	.	41	4	41	0	.	90
AGTPBP1	23287	bcgsc.ca	37	9	88207545	88207545	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGTPBP1	NM_015239	exon19	c.T2378A	p.V793D	.	.	137	5	207	0	.	158
AGTR1	185	bcgsc.ca	37	3	148458926	148458926	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AGTR1	NM_031850	exon4	c.A209T	p.Y70F	.	.	88	7	98	0	.	90
AKAP11	11215	bcgsc.ca	37	13	42871189	42871189	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP11	NM_016248	exon6	c.A222T	p.L74F	.	.	235	6	315	0	.	227
AKAP13	11214	ucsc.edu;bcgsc.ca	37	15	86123458	86123458	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP13	NM_007200	exon7	c.A2159G	p.D720G	.	.	48	5	47	0	.	258
AKAP1	8165	bcgsc.ca	37	17	55197627	55197627	+	Missense_Mutation	SNP	G	G	T	rs150279297	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP1	NM_001242902	exon12	c.G2654T	p.R885L	.	.	77	5	80	0	G|1.000;A|0.000	227
AKAP8	10270	bcgsc.ca	37	19	15469832	15469832	+	Silent	SNP	A	A	T	rs113570027	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKAP8	NM_005858	exon13	c.T1569A	p.A523A	.	.	80	4	61	0	A|0.500;G|0.500	290
AKNA	80709	ucsc.edu;bcgsc.ca	37	9	117113246	117113246	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNA	NM_030767	exon15	c.C3114T	p.P1038P	.	.	34	4	67	0	.	94
AKNAD1	254268	ucsc.edu;bcgsc.ca	37	1	109363223	109363223	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKNAD1	NM_152763	exon14	c.T2193C	p.C731C	.	.	41	4	30	0	.	93
AKR1CL1	340811	bcgsc.ca	37	10	5203821	5203821	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKR1CL1	.	.	.	.	.	.	73	4	72	0	.	90
AKR1CL1	340811	ucsc.edu	37	10	5203715	5203715	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKR1CL1	.	.	.	.	.	.	59	6	44	0	.	90
AKT3	10000	bcgsc.ca	37	1	243858953	243858953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AKT3	NM_001206729	exon3	c.T112C	p.Y38H	.	.	54	4	35	0	.	1423
ALAS2	212	ucsc.edu;bcgsc.ca	37	X	55040038	55040038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALAS2	NM_000032	exon10	c.T1481C	p.L494P	.	.	65	5	64	0	.	131
ALDH16A1	126133	bcgsc.ca	37	19	49967153	49967153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALDH16A1	NM_153329	exon9	c.C1141T	p.P381S	.	.	81	5	89	0	.	91
ALDH1A1	216	bcgsc.ca	37	9	75524667	75524667	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALDH1A1	NM_000689	exon11	c.A1209G	p.G403G	.	.	50	5	77	0	.	230
ALDH6A1	4329	bcgsc.ca	37	14	74533511	74533511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALDH6A1	NM_005589	exon9	c.G1121A	p.G374E	.	.	77	5	84	0	.	90
ALG13	79868	bcgsc.ca	37	X	110931116	110931116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALG13	NM_018466	exon4	c.A385G	p.T129A	.	.	178	5	161	0	.	130
ALG13	79868	bcgsc.ca	37	X	110954950	110954950	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALG13	NM_001099922	exon6	c.C882A	p.P294P	.	.	78	4	111	0	.	130
ALK	238	bcgsc.ca	37	2	29446255	29446255	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALK	NM_004304	exon20	c.C3312A	p.S1104S	.	.	82	4	62	0	.	3833
ALMS1	7840	bcgsc.ca	37	2	73716955	73716955	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALMS1	NM_015120	exon10	c.A7866G	p.R2622R	.	.	74	5	77	0	.	142
ALPK3	57538	bcgsc.ca	37	15	85383977	85383977	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ALPK3	NM_020778	exon5	c.A2073G	p.K691K	.	.	70	4	72	0	.	337
AMACR	23600	bcgsc.ca	37	5	33989309	33989309	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AMACR	NM_014324	exon5	c.A1038G	p.I346M	.	.	64	4	79	0	.	90
ANGPT1	284	bcgsc.ca	37	8	108315505	108315505	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANGPT1	NM_001146	exon5	c.A899T	p.Y300F	.	.	145	6	62	0	.	521
ANK1	286	bcgsc.ca	37	8	41543721	41543721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANK1	NM_001142446	exon37	c.A4462G	p.S1488G	.	.	75	4	110	1	.	716
ANK3	288	bcgsc.ca	37	10	61958272	61958272	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANK3	NM_020987	exon14	c.T1515C	p.I505I	.	.	131	5	127	0	.	107
ANKAR	150709	bcgsc.ca	37	2	190571736	190571736	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKAR	NM_144708	exon9	c.C1983A	p.I661I	.	.	168	6	162	1	.	72
ANKAR	150709	bcgsc.ca	37	2	190593499	190593499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKAR	NM_144708	exon15	c.G3145A	p.E1049K	.	.	130	5	115	0	.	72
ANKFN1	162282	ucsc.edu	37	17	54535281	54535281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKFN1	NM_153228	exon13	c.T1507A	p.S503T	.	.	31	4	29	0	.	136
ANKHD1	54882	bcgsc.ca	37	5	139825423	139825423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKHD1	NM_024668	exon6	c.A1010G	p.N337S	.	.	123	5	117	0	.	185
ANKRD18B	441459	bcgsc.ca	37	9	33536894	33536894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001244752	exon6	c.G759T	p.L253F	.	.	160	6	258	0	.	.
ANKRD24	170961	ucsc.edu;bcgsc.ca	37	19	4224483	4224483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD24	NM_133475	exon22	c.T3422C	p.L1141P	.	.	25	4	21	0	.	68
ANKRD28	23243	bcgsc.ca	37	3	15836770	15836770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD28	NM_015199	exon2	c.T71C	p.V24A	.	.	99	4	88	0	.	135
ANKRD45	339416	ucsc.edu;bcgsc.ca	37	1	173596300	173596300	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKRD45	NM_198493	exon5	c.497-2A>G	.	.	.	33	4	33	0	.	90
ANKS1A	23294	bcgsc.ca	37	6	35051257	35051257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANKS1A	NM_015245	exon20	c.A2971G	p.K991E	.	.	79	5	125	0	.	94
ANKS1B	56899	bcgsc.ca	37	12	99139534	99139534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_181670	exon13	c.G1516A	p.E506K	.	.	75	4	59	0	.	.
ANO3	63982	broad.mit.edu	37	11	26529751	26529751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANO3	NM_031418	exon5	c.A533G	p.D178G	.	.	63	5	77	0	.	93
ANXA2P3	305	ucsc.edu;bcgsc.ca	37	10	66585997	66585997	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	29	4	31	0	.	.
ANXA7	310	bcgsc.ca	37	10	75143039	75143039	+	Missense_Mutation	SNP	C	C	T	rs201798284		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ANXA7	NM_004034	exon10	c.G878A	p.R293Q	.	.	70	4	87	0	C|0.999;T|0.001	516
AP5M1	55745	ucsc.edu	37	14	57748928	57748928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_018229	exon4	c.A1070G	p.H357R	.	.	30	4	17	0	.	.
APBB1	322	bcgsc.ca	37	11	6422274	6422274	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	APBB1	NM_001164	exon11	c.G1617A	p.L539L	.	.	69	5	88	0	.	136
APEH	327	ucsc.edu;bcgsc.ca	37	3	49713561	49713561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	APEH	NM_001640	exon6	c.A515G	p.K172R	.	.	25	4	41	0	.	91
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72404496	72404496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARAP1	NM_001040118	exon29	c.C3828A	p.T1276T	.	.	41	4	46	0	.	91
ARFGEF1	10565	bcgsc.ca	37	8	68116968	68116968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARFGEF1	NM_006421	exon35	c.T4906C	p.F1636L	.	.	99	4	50	0	.	294
ARHGAP21	57584	bcgsc.ca	37	10	24959198	24959198	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARHGAP21	NM_020824	exon3	c.A192G	p.L64L	.	.	126	6	120	0	.	235
ARHGAP28	79822	bcgsc.ca	37	18	6873769	6873769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARHGAP28	NM_001010000	exon8	c.C730A	p.Q244K	.	.	77	4	46	0	.	91
ARHGAP32	9743	broad.mit.edu	37	11	128842922	128842922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARHGAP32	NM_001142685	exon21	c.A3437G	p.D1146G	.	.	99	6	107	0	.	231
ARHGAP4	393	bcgsc.ca	37	X	153185132	153185132	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARHGAP4	NM_001164741	exon6	c.C690T	p.P230P	.	.	77	4	73	0	.	227
ARL5B	221079	bcgsc.ca	37	10	18955526	18955526	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARL5B	NM_178815	exon2	c.A69G	p.G23G	.	.	80	4	91	1	.	228
ARMC1	55156	bcgsc.ca	37	8	66539561	66539561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARMC1	NM_018120	exon2	c.G73T	p.A25S	.	.	60	4	56	0	.	91
ARMCX1	51309	bcgsc.ca	37	X	100808835	100808835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARMCX1	NM_016608	exon4	c.G922T	p.G308W	.	.	65	4	77	0	.	134
ARNTL	406	ucsc.edu;bcgsc.ca	37	11	13408275	13408275	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARNTL	NM_001030272	exon19	c.A1850G	p.D617G	.	.	62	6	50	0	.	90
ARPC2	10109	bcgsc.ca	37	2	219099093	219099093	+	Nonsense_Mutation	SNP	G	G	T	rs199578440	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARPC2	NM_152862	exon5	c.G241T	p.E81X	.	.	66	6	51	0	G|0.999;A|0.001	91
ARRDC5	645432	bcgsc.ca	37	19	4896849	4896849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080523	exon2	c.A335G	p.H112R	.	.	85	4	74	0	.	.
ARSK	153642	bcgsc.ca	37	5	94936690	94936690	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ARSK	NM_198150	exon7	c.G1236T	p.V412V	.	.	128	5	87	0	.	91
ART4	420	bcgsc.ca	37	12	14993508	14993508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ART4	NM_021071	exon2	c.A724G	p.K242E	.	.	70	4	67	0	.	90
ASAH1	427	bcgsc.ca	37	8	17928881	17928881	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASAH1	NM_001127505	exon4	c.A213G	p.P71P	.	.	55	4	53	0	.	90
ASAP1	50807	bcgsc.ca	37	8	131136320	131136320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASAP1	NM_018482	exon18	c.A1546T	p.N516Y	.	.	136	5	69	0	.	95
ASCC1	51008	bcgsc.ca	37	10	73963267	73963267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASCC1	NM_001198799	exon5	c.G312T	p.K104N	.	.	74	4	51	0	.	226
ASCL3	56676	bcgsc.ca	37	11	8959334	8959334	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASCL3	NM_020646	exon2	c.G375T	p.L125F	.	.	55	4	51	0	.	90
ASPSCR1	79058	bcgsc.ca	37	17	79954664	79954669	+	In_Frame_Del	DEL	AGCAGG	AGCAGG	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	AGCAGG	AGCAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASPSCR1	NM_001251888	exon7	c.875_880del	p.292_294del	.	.	91	7	149	0	.	877
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31019176	31019176	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASXL1	NM_015338	exon8	c.C771T	p.S257S	.	.	77	6	41	0	.	2057
ASXL2	55252	bcgsc.ca	37	2	25976455	25976455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ASXL2	NM_018263	exon10	c.A1090G	p.K364E	.	.	198	6	201	2	.	23
ATG2B	55102	bcgsc.ca	37	14	96777580	96777580	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATG2B	NM_018036	exon28	c.T4035A	p.H1345Q	.	.	72	6	59	0	.	93
ATMIN	23300	bcgsc.ca	37	16	81075054	81075054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATMIN	NM_015251	exon2	c.A430G	p.R144G	.	.	117	6	133	0	.	68
ATMIN	23300	bcgsc.ca	37	16	81077448	81077448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATMIN	NM_015251	exon4	c.T1345C	p.S449P	.	.	61	5	78	0	.	68
ATP10B	23120	bcgsc.ca	37	5	160061556	160061556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP10B	NM_025153	exon12	c.T1186C	p.F396L	.	.	50	4	58	0	.	72
ATP11B	23200	bcgsc.ca	37	3	182602656	182602656	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP11B	NM_014616	exon22	c.A2625T	p.I875I	.	.	91	4	62	0	.	93
ATP1B1	481	bcgsc.ca	37	1	169076128	169076128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP1B1	NM_001677	exon1	c.A61G	p.K21E	.	.	83	5	164	0	.	540
ATP2A1	487	bcgsc.ca	37	16	28914733	28914733	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP2A1	NM_004320	exon21	c.C2952A	p.L984L	.	.	68	4	71	0	.	93
ATP2B4	493	bcgsc.ca	37	1	203682373	203682373	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP2B4	NM_001001396	exon14	c.G2292T	p.L764L	.	.	53	4	65	0	.	517
ATP6V0A1	535	bcgsc.ca	37	17	40652907	40652907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP6V0A1	NM_001130020	exon16	c.C1883T	p.P628L	.	.	152	6	196	1	.	91
ATP6V1C1	528	bcgsc.ca	37	8	104061104	104061104	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATP6V1C1	NM_001695	exon4	c.T207A	p.V69V	.	.	77	4	78	0	.	90
ATR	545	bcgsc.ca	37	3	142272558	142272558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATR	NM_001184	exon12	c.G2557A	p.A853T	.	.	117	5	147	0	.	1139
ATRN	8455	bcgsc.ca	37	20	3543098	3543098	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATRN	NM_139321	exon9	c.C1623T	p.T541T	.	.	138	6	142	0	.	154
ATRNL1	26033	bcgsc.ca	37	10	117024700	117024700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATRNL1	NM_207303	exon11	c.C1718T	p.P573L	.	.	30	3	48	0	.	96
ATXN3	4287	bcgsc.ca	37	14	92547352	92547352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATXN3	NM_004993	exon9	c.A829G	p.T277A	.	.	45	4	65	0	.	522
ATXN7L1	222255	bcgsc.ca	37	7	105280017	105280017	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ATXN7L1	NM_138495	exon5	c.491-1G>T	.	.	.	33	3	35	0	.	90
AURKB	9212	bcgsc.ca	37	17	8111082	8111082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AURKB	NM_004217	exon3	c.T125A	p.M42K	.	.	69	5	107	0	.	1508
AXIN2	8313	bcgsc.ca	37	17	63554237	63554237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	AXIN2	NM_004655	exon2	c.T502C	p.S168P	.	.	50	4	82	0	.	658
B3GALNT2	148789	bcgsc.ca	37	1	235643401	235643401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	B3GALNT2	NM_152490	exon5	c.A620T	p.Y207F	.	.	50	4	56	0	.	153
B4GALT6	9331	bcgsc.ca	37	18	29237953	29237953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	B4GALT6	NM_004775	exon3	c.A332G	p.K111R	.	.	177	5	135	0	.	90
BACH1	571	ucsc.edu;bcgsc.ca	37	21	30693541	30693541	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BACH1	.	.	.	.	.	.	40	4	25	0	.	92
BAG5	9529	bcgsc.ca	37	14	104027170	104027170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAG5	NM_001015049	exon2	c.C455A	p.P152Q	.	.	106	6	148	0	.	229
BAG6	7917	bcgsc.ca	37	6	31606925	31606925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAG6	NM_004639	exon25	c.T3382C	p.F1128L	.	.	55	4	67	0	.	154
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	52439874	52439874	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAP1	NM_004656	exon10	c.C838T	p.Q280X	.	.	28	19	39	0	.	1032
BAZ1A	11177	bcgsc.ca	37	14	35240858	35240858	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAZ1A	NM_013448	exon21	c.G3160A	p.G1054R	.	.	85	4	93	0	.	291
BAZ2B	29994	bcgsc.ca	37	2	160231200	160231200	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BAZ2B	NM_013450	exon27	c.4068+2T>A	.	.	.	78	4	39	0	.	94
BBS12	166379	bcgsc.ca	37	4	123664416	123664416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BBS12	NM_001178007	exon3	c.A1369G	p.I457V	.	.	84	4	82	0	.	92
BCAT2	587	bcgsc.ca	37	19	49303243	49303243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BCAT2	NM_001190	exon5	c.A526G	p.N176D	.	.	69	6	48	0	.	91
BCR	613	ucsc.edu	37	22	23656207	23656207	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BCR	NM_004327	exon21	c.C3510A	p.S1170S	.	.	24	4	42	0	.	1349
BDP1	55814	bcgsc.ca	37	5	70820147	70820147	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BDP1	NM_018429	exon25	c.A5769G	p.E1923E	.	.	75	5	89	0	.	92
BICC1	80114	bcgsc.ca	37	10	60558277	60558277	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BICC1	NM_001080512	exon11	c.C1485A	p.P495P	.	.	92	5	72	0	.	72
BIN2	51411	bcgsc.ca	37	12	51693071	51693071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BIN2	NM_016293	exon7	c.C518A	p.A173E	.	.	61	4	37	0	.	91
BIRC3	330	bcgsc.ca	37	11	102196272	102196272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BIRC3	NM_001165	exon3	c.T929C	p.V310A	.	.	148	5	156	0	.	662
BIRC3	330	bcgsc.ca	37	11	102206862	102206862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BIRC3	NM_001165	exon7	c.A1490G	p.D497G	.	.	51	5	52	0	.	662
BLNK	29760	bcgsc.ca	37	10	97951789	97951789	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BLNK	NM_013314	exon17	c.T1311C	p.I437I	.	.	74	4	92	0	.	92
BLNK	29760	bcgsc.ca	37	10	97963829	97963829	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BLNK	NM_001258440	exon13	c.A918G	p.K306K	.	.	82	4	103	0	.	92
BORA	79866	bcgsc.ca	37	13	73312100	73312100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_024808	exon5	c.T307C	p.F103L	.	.	78	4	81	0	.	.
BROX	148362	bcgsc.ca	37	1	222905990	222905990	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BROX	NM_144695	exon13	c.A1170G	p.E390E	.	.	147	5	202	0	.	22
BRPF1	7862	bcgsc.ca	37	3	9780955	9780955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BRPF1	NM_001003694	exon3	c.T872C	p.L291P	.	.	61	4	55	0	.	92
BRWD3	254065	bcgsc.ca	37	X	79999750	79999750	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BRWD3	NM_153252	exon8	c.T594C	p.G198G	.	.	107	5	118	1	.	134
BSCL2	26580	bcgsc.ca	37	11	62458562	62458562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BSCL2	NM_001122955	exon8	c.T1057C	p.S353P	.	.	66	4	84	0	.	514
BTRC	8945	bcgsc.ca	37	10	103285902	103285902	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BTRC	NM_033637	exon6	c.A689G	p.E230G	.	.	73	4	90	0	.	659
BYSL	705	bcgsc.ca	37	6	41899162	41899162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	BYSL	NM_004053	exon5	c.A733G	p.M245V	.	.	70	4	72	0	.	90
C10orf129	142827	ucsc.edu;bcgsc.ca	37	10	96967135	96967135	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf129	NM_207321	exon4	c.A574G	p.S192G	.	.	37	4	40	0	.	90
C10orf137	26098	bcgsc.ca	37	10	127422048	127422048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf137	NM_001202438	exon10	c.A1204G	p.I402V	.	.	73	4	107	0	.	590
C10orf137	26098	bcgsc.ca	37	10	127426515	127426515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf137	NM_001202438	exon14	c.A1787G	p.D596G	.	.	76	4	90	0	.	590
C10orf68	79741	bcgsc.ca	37	10	32978070	32978070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C10orf68	NM_024688	exon5	c.C244A	p.L82I	.	.	125	8	101	0	.	47
C11orf30	56946	ucsc.edu;bcgsc.ca	37	11	76224573	76224573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C11orf30	NM_020193	exon10	c.C1507A	p.P503T	.	.	43	4	74	0	.	232
C12orf40	283461	bcgsc.ca	37	12	40076634	40076634	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C12orf40	NM_001031748	exon8	c.A908G	p.N303S	.	.	74	4	55	0	.	96
C12orf4	57102	bcgsc.ca	37	12	4645292	4645292	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C12orf4	NM_020374	exon2	c.T69C	p.S23S	.	.	162	6	136	1	.	226
C12orf57	113246	bcgsc.ca	37	12	7054999	7054999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C12orf57	NM_138425	exon3	c.T295C	p.S99P	.	.	64	4	68	0	.	90
C14orf166B	145497	bcgsc.ca	37	14	77297631	77297631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_194287	exon3	c.C303A	p.F101L	.	.	36	4	38	0	.	.
C15orf60	283677	bcgsc.ca	37	15	73766224	73766224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C15orf60	NM_001042367	exon2	c.T211C	p.S71P	.	.	84	4	71	0	.	46
C16orf91	283951	bcgsc.ca	37	16	1470485	1470485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C16orf91	NM_001272051	exon2	c.C161T	p.S54F	.	.	55	4	35	0	.	90
C16orf93	90835	bcgsc.ca	37	16	30768934	30768934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C16orf93	NM_001014979	exon9	c.A859G	p.N287D	.	.	63	4	80	0	.	90
C17orf77	146723	ucsc.edu;bcgsc.ca	37	17	72588235	72588235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C17orf77	NM_152460	exon3	c.A50G	p.N17S	.	.	48	4	44	0	.	90
C1orf168	199920	bcgsc.ca	37	1	57192248	57192248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf168	NM_001004303	exon16	c.A1802G	p.D601G	.	.	69	4	54	0	.	95
C1orf177	163747	bcgsc.ca	37	1	55273229	55273229	+	Missense_Mutation	SNP	A	A	G	rs146088179		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf177	NM_001110533	exon3	c.A223G	p.K75E	.	.	65	4	42	0	A|1.000;G|0.000	90
C1orf51	148523	ucsc.edu;bcgsc.ca	37	1	150256042	150256042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf51	NM_144697	exon1	c.A365G	p.K122R	.	.	44	4	49	0	.	90
C1orf52	148423	bcgsc.ca	37	1	85725040	85725040	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1orf52	NM_198077	exon2	c.276+1G>A	.	.	.	28	4	43	0	.	91
C1QBP	708	ucsc.edu;bcgsc.ca	37	17	5336345	5336345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1QBP	NM_001212	exon6	c.A839T	p.K280M	.	.	44	5	60	0	.	91
C1QTNF9	338872	ucsc.edu	37	13	24890175	24890175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C1QTNF9	NM_178540	exon2	c.A34G	p.I12V	.	.	49	4	79	0	.	90
C20orf26	26074	ucsc.edu	37	20	20144750	20144750	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C20orf26	NM_015585	exon11	c.C1083T	p.S361S	.	.	44	4	25	0	.	94
C2orf48	348738	bcgsc.ca	37	2	10282076	10282076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C2orf48	NM_182626	exon1	c.T67C	p.C23R	.	.	134	6	114	0	.	90
C4orf21	55345	bcgsc.ca	37	4	113538681	113538681	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C4orf21	NM_018392	exon6	c.A2517T	p.L839F	.	.	172	5	202	0	.	90
C4orf6	10141	bcgsc.ca	37	4	5527981	5527981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C4orf6	NM_005750	exon2	c.T205C	p.F69L	.	.	53	4	56	0	.	90
C5	727	bcgsc.ca	37	9	123752030	123752030	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C5	NM_001735	exon24	c.A2970G	p.A990A	.	.	34	4	45	0	.	92
C5orf42	65250	bcgsc.ca	37	5	37243198	37243198	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C5orf42	NM_023073	exon6	c.T594C	p.C198C	.	.	243	7	195	0	.	94
C9orf3	84909	ucsc.edu;bcgsc.ca	37	9	97718269	97718269	+	Missense_Mutation	SNP	C	C	T	rs146376377		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C9orf3	NM_001193329	exon8	c.C1844T	p.T615I	.	.	32	4	32	0	C|0.999;T|0.000	91
C9orf57	138240	ucsc.edu	37	9	74667270	74667270	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001128618	exon5	c.T428C	p.L143P	.	.	56	5	62	0	.	.
C9orf84	158401	bcgsc.ca	37	9	114510465	114510465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	C9orf84	NM_173521	exon7	c.C685T	p.H229Y	.	.	56	4	94	0	.	92
CABYR	26256	bcgsc.ca	37	18	21736433	21736433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CABYR	NM_012189	exon4	c.A968G	p.Q323R	.	.	76	5	61	0	.	90
CACHD1	57685	bcgsc.ca	37	1	65145291	65145291	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACHD1	NM_020925	exon24	c.C3105A	p.I1035I	.	.	57	5	53	0	.	92
CACNA1E	777	bcgsc.ca	37	1	181705494	181705494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA1E	NM_001205293	exon22	c.C3346A	p.Q1116K	.	.	98	5	168	1	.	95
CACNA1F	778	bcgsc.ca	37	X	49079245	49079245	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA1F	NM_005183	exon16	c.A2171T	p.Y724F	.	.	59	4	82	0	.	176
CACNA1S	779	bcgsc.ca	37	1	201038270	201038270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA1S	NM_000069	exon19	c.C2545A	p.L849I	.	.	58	4	84	0	.	94
CACNA2D1	781	bcgsc.ca	37	7	81643748	81643748	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D1	NM_000722	exon13	c.A1191G	p.G397G	.	.	48	4	34	0	.	96
CACNA2D2	9254	ucsc.edu;bcgsc.ca	37	3	50421651	50421651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D2	NM_001174051	exon6	c.A628G	p.I210V	.	.	50	5	95	0	.	278
CACNA2D3	55799	bcgsc.ca	37	3	54157603	54157603	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D3	NM_018398	exon2	c.T186C	p.G62G	.	.	83	5	125	0	.	138
CACNA2D4	93589	bcgsc.ca	37	12	2016683	2016683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CACNA2D4	NM_172364	exon6	c.T704C	p.V235A	.	.	66	4	40	0	.	23
CADM1	23705	ucsc.edu;bcgsc.ca	37	11	115099884	115099884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CADM1	NM_014333	exon5	c.C670A	p.H224N	.	.	38	4	34	0	.	92
CAGE1	285782	bcgsc.ca	37	6	7379185	7379185	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CAGE1	NM_001170693	exon4	c.T352C	p.L118L	.	.	64	4	58	0	.	22
CALHM1	255022	bcgsc.ca	37	10	105215151	105215151	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CALHM1	NM_001001412	exon2	c.C909A	p.L303L	.	.	51	4	90	0	.	91
CALM1	801	bcgsc.ca	37	14	90870218	90870218	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CALM1	NM_006888	exon4	c.T191C	p.I64T	.	.	90	5	99	0	.	90
CAMLG	819	bcgsc.ca	37	5	134077190	134077190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CAMLG	NM_001745	exon2	c.A610G	p.R204G	.	.	104	4	109	0	.	90
CANX	821	bcgsc.ca	37	5	179143191	179143191	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CANX	NM_001746	exon8	c.T807C	p.P269P	.	.	99	5	59	0	.	90
CAPN7	23473	bcgsc.ca	37	3	15262450	15262450	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CAPN7	NM_014296	exon5	c.A600G	p.Q200Q	.	.	160	5	168	0	.	91
CAPN7	23473	bcgsc.ca	37	3	15274088	15274088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CAPN7	NM_014296	exon10	c.C1095A	p.N365K	.	.	82	6	77	0	.	91
CAPZA1	829	bcgsc.ca	37	1	113197139	113197139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CAPZA1	NM_006135	exon5	c.G272T	p.R91I	.	.	125	7	137	0	.	514
CARD17	440068	bcgsc.ca	37	11	104971328	104971328	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CARD17	NM_001007232	exon2	c.T186C	p.I62I	.	.	130	5	125	1	.	45
CASP1	834	ucsc.edu;bcgsc.ca	37	11	104897623	104897623	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CASP1	NM_001257118	exon8	c.T1062C	p.I354I	.	.	42	5	31	0	.	661
CBL	867	bcgsc.ca	37	11	119148485	119148485	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CBL	NM_005188	exon7	c.A1026G	p.G342G	.	.	100	5	113	0	.	4020
CBWD2	150472	bcgsc.ca	37	2	114212316	114212316	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CBWD2	NM_172003	exon6	c.491-2A>G	.	.	.	242	6	203	0	.	90
CCDC108	255101	bcgsc.ca	37	2	219886513	219886513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC108	NM_194302	exon18	c.A3119G	p.N1040S	.	.	71	5	59	0	.	94
CCDC109B	55013	ucsc.edu;bcgsc.ca	37	4	110581513	110581513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC109B	NM_017918	exon3	c.T338C	p.F113S	.	.	41	4	58	0	.	90
CCDC11	220136	bcgsc.ca	37	18	47778130	47778130	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC11	NM_145020	exon4	c.T498C	p.V166V	.	.	85	5	46	0	.	93
CCDC113	29070	bcgsc.ca	37	16	58293758	58293758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC113	NM_014157	exon5	c.G547T	p.D183Y	.	.	141	6	176	0	.	90
CCDC120	90060	ucsc.edu;bcgsc.ca	37	X	48919845	48919845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC120	NM_001163321	exon3	c.T143C	p.F48S	.	.	34	4	46	0	.	131
CCDC129	223075	bcgsc.ca	37	7	31683060	31683060	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001257968	exon11	c.A2154G	p.E718E	.	.	57	4	41	0	.	.
CCDC132	55610	bcgsc.ca	37	7	92940498	92940498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC132	NM_017667	exon20	c.A1769G	p.K590R	.	.	127	5	106	0	.	90
CCDC136	64753	ucsc.edu;bcgsc.ca	37	7	128454946	128454946	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC136	NM_022742	exon15	c.T3018C	p.T1006T	.	.	41	4	32	0	.	24
CCDC150	284992	bcgsc.ca	37	2	197511147	197511147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080539	exon2	c.T95C	p.L32P	.	.	70	4	76	0	.	.
CCDC155	147872	bcgsc.ca	37	19	49913072	49913072	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC155	NM_144688	exon15	c.A1209G	p.E403E	.	.	75	4	55	0	.	69
CCDC168	643677	bcgsc.ca	37	13	103384657	103384657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001146197	exon4	c.G18390T	p.K6130N	.	.	123	5	175	0	.	.
CCDC38	120935	bcgsc.ca	37	12	96282266	96282266	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC38	NM_182496	exon10	c.T890A	p.L297Q	.	.	162	7	156	0	.	91
CCDC63	160762	bcgsc.ca	37	12	111336880	111336880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC63	NM_152591	exon10	c.G1293T	p.Q431H	.	.	81	5	58	0	.	134
CCDC7	221016	bcgsc.ca	37	10	32751943	32751943	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC7	NM_145023	exon6	c.478-2A>G	.	.	.	166	6	182	0	.	90
CCDC7	221016	bcgsc.ca	37	10	32762940	32762940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC7	NM_145023	exon9	c.C785T	p.A262V	.	.	105	4	56	0	.	90
CCDC74B	91409	bcgsc.ca	37	2	130899730	130899730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC74B	NM_207310	exon3	c.T520C	p.S174P	.	.	136	7	191	0	.	90
CCDC77	84318	bcgsc.ca	37	12	542472	542472	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC77	NM_032358	exon9	c.A805G	p.K269E	.	.	158	7	164	0	.	91
CCDC83	220047	bcgsc.ca	37	11	85610008	85610008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC83	NM_173556	exon7	c.G622T	p.D208Y	.	.	63	4	67	0	.	91
CCDC88A	55704	bcgsc.ca	37	2	55576655	55576655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC88A	NM_018084	exon9	c.A881G	p.E294G	.	.	133	5	84	0	.	94
CCDC88C	440193	bcgsc.ca	37	14	91808796	91808796	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC88C	NM_001080414	exon6	c.A411G	p.K137K	.	.	85	4	117	0	.	25
CCDC96	257236	bcgsc.ca	37	4	7043834	7043834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCDC96	NM_153376	exon1	c.C832A	p.P278T	.	.	38	4	44	0	.	90
CCNB3	85417	bcgsc.ca	37	X	50051627	50051627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCNB3	NM_033031	exon5	c.T458C	p.L153P	.	.	137	5	193	0	.	482
CCNL1	57018	bcgsc.ca	37	3	156868165	156868165	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCNL1	NM_020307	exon6	c.A680T	p.Y227F	.	.	64	4	50	0	.	659
CCR5	1234	bcgsc.ca	37	3	46414666	46414666	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCR5	NM_000579	exon3	c.C273A	p.A91A	.	.	57	5	118	0	.	993
CCRL2	9034	bcgsc.ca	37	3	46449776	46449776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CCRL2	NM_001130910	exon2	c.T242C	p.L81P	.	.	73	4	127	0	.	569
CD101	9398	bcgsc.ca	37	1	117560953	117560953	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD101	NM_001256109	exon6	c.C1788A	p.T596T	.	.	55	4	70	0	.	94
CD101	9398	bcgsc.ca	37	1	117564315	117564315	+	Missense_Mutation	SNP	G	G	T	rs201463000	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD101	NM_001256109	exon7	c.G2138T	p.W713L	.	.	76	4	96	0	.	94
CD244	51744	bcgsc.ca	37	1	160802329	160802329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD244	NM_001166663	exon8	c.A1012G	p.N338D	.	.	64	4	72	0	.	91
CD248	57124	bcgsc.ca	37	11	66082870	66082870	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD248	NM_020404	exon1	c.C1629T	p.T543T	.	.	48	4	98	0	.	154
CD2AP	23607	bcgsc.ca	37	6	47522447	47522447	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD2AP	NM_012120	exon5	c.G486A	p.V162V	.	.	100	6	110	1	.	92
CD96	10225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111319663	111319663	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CD96	NM_198196	exon8	c.C1037G	p.A346G	.	.	64	35	79	0	.	93
CDC40	51362	ucsc.edu;bcgsc.ca	37	6	110551184	110551184	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDC40	NM_015891	exon15	c.A1590G	p.G530G	.	.	43	4	77	0	.	90
CDC42BPA	8476	bcgsc.ca	37	1	227307610	227307610	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDC42BPA	NM_003607	exon12	c.A1542G	p.E514E	.	.	55	4	48	0	.	549
CDC45	8318	ucsc.edu	37	22	19484961	19484961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDC45	NM_001178010	exon9	c.A740G	p.D247G	.	.	37	5	58	0	.	227
CDH13	1012	bcgsc.ca	37	16	83704400	83704400	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDH13	NM_001220488	exon10	c.A1248G	p.Q416Q	.	.	66	4	72	0	.	67
CDH2	1000	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	25591881	25591881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDH2	NM_001792	exon4	c.A475G	p.R159G	.	.	88	33	81	1	.	525
CDH8	1006	bcgsc.ca	37	16	61747783	61747783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDH8	NM_001796	exon10	c.T1616C	p.M539T	.	.	71	4	59	0	.	161
CDK12	51755	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37619236	37619236	+	Silent	SNP	C	C	G	rs56403491	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK12	NM_016507	exon1	c.C912G	p.P304P	.	.	37	19	54	0	C|0.998;G|0.002	1055
CDK17	5128	ucsc.edu;bcgsc.ca	37	12	96707197	96707197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK17	NM_001170464	exon4	c.G319A	p.G107S	.	.	28	4	24	0	.	550
CDK7	1022	bcgsc.ca	37	5	68568859	68568859	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CDK7	NM_001799	exon10	c.G855T	p.T285T	.	.	169	7	97	0	.	964
CDPF1	150383	bcgsc.ca	37	22	46641084	46641084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_207327	exon4	c.A277G	p.N93D	.	.	44	4	66	1	.	.
CEACAM1	634	bcgsc.ca	37	19	43031434	43031434	+	Missense_Mutation	SNP	T	T	A	rs140316654	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEACAM1	NM_001184816	exon2	c.A183T	p.Q61H	.	.	233	15	208	5	T|0.979;A|0.021	515
CELSR3	1951	bcgsc.ca	37	3	48677243	48677243	+	Missense_Mutation	SNP	A	A	G	rs200610415		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CELSR3	NM_001407	exon34	c.T9775C	p.S3259P	.	.	100	5	182	3	A|0.999;G|0.000	523
CENPC1	1060	bcgsc.ca	37	4	68378130	68378130	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPC1	NM_001812	exon9	c.A1602G	p.K534K	.	.	68	4	63	0	.	205
CENPE	1062	bcgsc.ca	37	4	104065640	104065640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPE	NM_001813	exon33	c.A4993G	p.T1665A	.	.	170	6	199	0	.	277
CENPF	1063	bcgsc.ca	37	1	214787098	214787098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPF	NM_016343	exon2	c.A1G	p.M1V	.	.	91	5	144	0	.	567
CENPF	1063	bcgsc.ca	37	1	214813691	214813691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPF	NM_016343	exon12	c.G2010A	p.M670I	.	.	72	4	66	0	.	567
CENPP	401541	bcgsc.ca	37	9	95094585	95094585	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPP	NM_001012267	exon2	c.C241A	p.H81N	.	.	106	5	114	0	.	49
CENPQ	55166	bcgsc.ca	37	6	49437980	49437980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CENPQ	NM_018132	exon2	c.T91C	p.S31P	.	.	139	5	145	0	.	92
CEP112	201134	bcgsc.ca	37	17	64062976	64062976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEP112	NM_001199165	exon10	c.A875G	p.N292S	.	.	92	4	71	0	.	90
CEP70	80321	bcgsc.ca	37	3	138213913	138213913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEP70	NM_024491	exon18	c.G1738T	p.D580Y	.	.	73	4	70	0	.	69
CEP72	55722	bcgsc.ca	37	5	619155	619155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEP72	NM_018140	exon2	c.C133T	p.H45Y	.	.	118	5	75	0	.	69
CEP72	55722	bcgsc.ca	37	5	639233	639233	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEP72	NM_018140	exon8	c.C1236T	p.P412P	.	.	51	4	48	0	.	69
CEP85L	387119	bcgsc.ca	37	6	118801576	118801576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001178035	exon10	c.A1855G	p.N619D	.	.	52	4	54	0	.	.
CEP89	84902	bcgsc.ca	37	19	33422413	33422413	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CEP89	NM_032816	exon9	c.A951G	p.G317G	.	.	95	4	64	0	.	94
CERS6	253782	bcgsc.ca	37	2	169404136	169404136	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001256126	exon2	c.C201A	p.L67L	.	.	39	4	42	0	.	.
CETN3	1070	bcgsc.ca	37	5	89701502	89701502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CETN3	NM_004365	exon3	c.G268T	p.V90L	.	.	108	5	58	0	.	90
CHD1	1105	bcgsc.ca	37	5	98229163	98229163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD1	NM_001270	exon13	c.C1948A	p.L650I	.	.	151	5	161	1	.	274
CHD6	84181	ucsc.edu;bcgsc.ca	37	20	40052166	40052166	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD6	NM_032221	exon30	c.G4521A	p.R1507R	.	.	44	4	52	0	.	238
CHD7	55636	bcgsc.ca	37	8	61754454	61754454	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD7	NM_017780	exon21	c.T4693A	p.Y1565N	.	.	112	6	85	0	.	141
CHD7	55636	bcgsc.ca	37	8	61757824	61757824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD7	NM_017780	exon23	c.T5066C	p.V1689A	.	.	76	4	77	0	.	141
CHD9	80205	bcgsc.ca	37	16	53288454	53288454	+	Missense_Mutation	SNP	G	G	T	rs187259321	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHD9	NM_025134	exon18	c.G3966T	p.L1322F	.	.	66	5	83	0	G|0.999;C|0.000	272
CHML	1122	bcgsc.ca	37	1	241798946	241798946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHML	NM_001821	exon1	c.C123A	p.S41R	.	.	70	4	65	0	.	96
CHPT1	56994	bcgsc.ca	37	12	102114023	102114023	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHPT1	NM_020244	exon5	c.C771A	p.S257S	.	.	114	5	94	0	.	90
CHRM5	1133	ucsc.edu	37	15	34355300	34355300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CHRM5	NM_012125	exon3	c.C382T	p.R128C	.	.	55	5	34	1	.	91
CIITA	4261	bcgsc.ca	37	16	10971227	10971227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CIITA	NM_000246	exon1	c.T40C	p.S14P	.	.	117	5	113	0	.	226
CIR1	9541	bcgsc.ca	37	2	175252467	175252467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CIR1	NM_004882	exon2	c.A113G	p.K38R	.	.	94	5	57	0	.	153
CITED2	10370	bcgsc.ca	37	6	139694776	139694776	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CITED2	NM_001168389	exon2	c.G321T	p.P107P	.	.	23	3	58	1	.	90
CLASP2	23122	bcgsc.ca	37	3	33614654	33614654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLASP2	NM_015097	exon26	c.A2674G	p.K892E	.	.	67	4	113	0	.	93
CLCNKB	1188	bcgsc.ca	37	1	16377036	16377036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLCNKB	NM_000085	exon11	c.A994G	p.T332A	.	.	54	4	96	0	.	91
CLEC16A	23274	bcgsc.ca	37	16	11065003	11065003	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLEC16A	NM_015226	exon5	c.T514C	p.Y172H	.	.	231	7	234	0	.	92
CLEC4C	170482	bcgsc.ca	37	12	7894044	7894044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLEC4C	NM_130441	exon4	c.T208C	p.C70R	.	.	63	4	43	0	.	93
CLEC4G	339390	bcgsc.ca	37	19	7794775	7794775	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLEC4G	NM_198492	exon8	c.G675T	p.L225L	.	.	26	4	39	0	.	90
CLGN	1047	bcgsc.ca	37	4	141321567	141321567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLGN	NM_001130675	exon8	c.C638A	p.P213Q	.	.	83	4	121	0	.	93
CLIP1	6249	bcgsc.ca	37	12	122831966	122831966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLIP1	NM_001247997	exon10	c.A1462G	p.K488E	.	.	37	4	51	0	.	155
CLK4	57396	bcgsc.ca	37	5	178040622	178040622	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLK4	NM_020666	exon7	c.A678T	p.L226L	.	.	146	5	155	0	.	359
CLPX	10845	bcgsc.ca	37	15	65444811	65444811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CLPX	NM_006660	exon13	c.G1768T	p.D590Y	.	.	92	5	92	0	.	90
CMAS	55907	bcgsc.ca	37	12	22211541	22211541	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CMAS	NM_018686	exon4	c.A600G	p.K200K	.	.	119	5	112	0	.	93
CMYA5	202333	bcgsc.ca	37	5	79033660	79033660	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CMYA5	NM_153610	exon2	c.T9072C	p.T3024T	.	.	240	6	231	0	.	77
CNBP	7555	bcgsc.ca	37	3	128889330	128889330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNBP	NM_001127192	exon5	c.T506C	p.L169P	.	.	50	4	42	0	.	226
CNKSR2	22866	bcgsc.ca	37	X	21627377	21627377	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNKSR2	NM_014927	exon20	c.T2334C	p.S778S	.	.	60	4	82	0	.	625
CNOT1	23019	ucsc.edu;bcgsc.ca	37	16	58612823	58612823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNOT1	NM_206999	exon13	c.A1364G	p.E455G	.	.	39	4	53	0	.	95
CNOT6	57472	bcgsc.ca	37	5	179994162	179994162	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNOT6	NM_015455	exon8	c.T792C	p.S264S	.	.	78	4	58	0	.	90
CNTN1	1272	bcgsc.ca	37	12	41330701	41330701	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTN1	NM_001256063	exon10	c.A1104G	p.G368G	.	.	102	5	85	0	.	1149
CNTN1	1272	bcgsc.ca	37	12	41353012	41353012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTN1	NM_001256063	exon15	c.G1780T	p.A594S	.	.	57	6	34	0	.	1149
CNTN5	53942	bcgsc.ca	37	11	100095538	100095538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTN5	NM_001243270	exon15	c.G1999A	p.V667I	.	.	75	4	36	0	.	366
CNTN5	53942	bcgsc.ca	37	11	99690380	99690380	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTN5	NM_001243270	exon3	c.A161T	p.Y54F	.	.	66	4	65	0	.	366
CNTNAP4	85445	bcgsc.ca	37	16	76501402	76501402	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTNAP4	NM_138994	exon9	c.C1418T	p.S473L	.	.	97	4	73	0	.	70
CNTRL	11064	bcgsc.ca	37	9	123924331	123924331	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CNTRL	NM_007018	exon32	c.5206-1G>T	.	.	.	66	4	86	0	.	661
COL11A1	1301	bcgsc.ca	37	1	103548492	103548492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL11A1	NM_001854	exon2	c.A143T	p.H48L	.	.	82	6	84	0	.	586
COL12A1	1303	bcgsc.ca	37	6	75864167	75864167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL12A1	NM_004370	exon17	c.T3530C	p.L1177P	.	.	64	4	112	0	.	142
COL14A1	7373	bcgsc.ca	37	8	121180406	121180406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL14A1	NM_021110	exon5	c.A356G	p.D119G	.	.	72	4	70	0	.	543
COL4A5	1287	bcgsc.ca	37	X	107925044	107925044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL4A5	NM_000495	exon45	c.C4124A	p.A1375D	.	.	109	6	112	0	.	133
COL6A3	1293	bcgsc.ca	37	2	238287355	238287355	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL6A3	NM_004369	exon6	c.T2421C	p.A807A	.	.	61	4	63	0	.	526
COL8A1	1295	ucsc.edu;bcgsc.ca	37	3	99514406	99514406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL8A1	NM_001850	exon5	c.G1661T	p.G554V	.	.	24	4	31	0	.	90
COL9A1	1297	ucsc.edu	37	6	70942388	70942388	+	Missense_Mutation	SNP	G	G	T	rs147095719	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COL9A1	NM_001851	exon36	c.C2401A	p.P801T	.	.	45	5	48	0	G|1.000;A|0.000	94
COPG1	22820	bcgsc.ca	37	3	128973914	128973914	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_016128	exon7	c.T486C	p.S162S	.	.	95	7	119	0	.	.
COQ10B	80219	bcgsc.ca	37	2	198338569	198338569	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COQ10B	NM_025147	exon5	c.A638G	p.E213G	.	.	93	4	59	0	.	90
COQ3	51805	bcgsc.ca	37	6	99825333	99825333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	COQ3	NM_017421	exon4	c.C415A	p.H139N	.	.	63	4	76	0	.	91
CP	1356	bcgsc.ca	37	3	148919949	148919949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CP	NM_000096	exon7	c.G1288T	p.D430Y	.	.	82	4	95	0	.	515
CPA5	93979	bcgsc.ca	37	7	130001068	130001068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPA5	NM_080385	exon7	c.T517C	p.S173P	.	.	70	4	72	0	.	92
CPNE4	131034	bcgsc.ca	37	3	131624277	131624277	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPNE4	NM_130808	exon2	c.T11C	p.M4T	.	.	100	6	108	0	.	92
CPNE9	151835	ucsc.edu;bcgsc.ca	37	3	9756640	9756640	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPNE9	NM_153635	exon10	c.692+1G>A	.	.	.	44	4	49	0	.	70
CPQ	10404	bcgsc.ca	37	8	97892177	97892177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_016134	exon4	c.G793T	p.D265Y	.	.	86	8	49	0	.	.
CPSF1	29894	bcgsc.ca	37	8	145619713	145619713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPSF1	NM_013291	exon32	c.C3625A	p.Q1209K	.	.	67	5	81	0	.	91
CPXM2	119587	ucsc.edu;bcgsc.ca	37	10	125601903	125601903	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CPXM2	NM_198148	exon4	c.C615T	p.F205F	.	.	45	4	51	0	.	92
CRB1	23418	ucsc.edu;bcgsc.ca	37	1	197390976	197390976	+	Missense_Mutation	SNP	A	A	G	rs145956521		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRB1	NM_001257966	exon6	c.A2018G	p.K673R	.	.	32	4	33	0	A|1.000;G|0.000	161
CRNKL1	51340	bcgsc.ca	37	20	20029114	20029114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRNKL1	NM_016652	exon5	c.G811A	p.V271I	.	.	62	4	93	0	.	137
CROT	54677	bcgsc.ca	37	7	87021014	87021014	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CROT	NM_001143935	exon15	c.G1495A	p.D499N	.	.	63	4	34	0	.	280
CRYL1	51084	bcgsc.ca	37	13	20987514	20987514	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRYL1	NM_015974	exon6	c.T646A	p.S216T	.	.	36	4	51	1	.	90
CRYZ	1429	bcgsc.ca	37	1	75188936	75188936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CRYZ	NM_001130043	exon3	c.G130T	p.A44S	.	.	61	4	58	0	.	90
CSDE1	7812	bcgsc.ca	37	1	115275399	115275399	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CSDE1	NM_001242891	exon11	c.G1014T	p.V338V	.	.	71	4	76	0	.	227
CSMD2	114784	bcgsc.ca	37	1	34076813	34076813	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CSMD2	NM_052896	exon41	c.C6051T	p.P2017P	.	.	57	4	62	0	.	103
CST6	1474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65780325	65780325	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CST6	NM_001323	exon2	c.C269A	p.T90K	.	.	35	25	53	0	.	523
CSTF3	1479	bcgsc.ca	37	11	33127564	33127564	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CSTF3	NM_001326	exon6	c.A403G	p.M135V	.	.	113	5	125	0	.	90
CTC1	80169	bcgsc.ca	37	17	8136327	8136327	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTC1	NM_025099	exon11	c.T1842C	p.A614A	.	.	69	4	64	0	.	93
CTNNBL1	56259	bcgsc.ca	37	20	36407689	36407689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTNNBL1	NM_030877	exon10	c.A983G	p.E328G	.	.	107	6	116	0	.	228
CTPS1	1503	bcgsc.ca	37	1	41475858	41475858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001905	exon18	c.A1717G	p.S573G	.	.	46	4	62	0	.	.
CTSF	8722	bcgsc.ca	37	11	66335016	66335016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTSF	NM_003793	exon3	c.G430A	p.G144S	.	.	50	4	68	0	.	90
CTSL1	1514	bcgsc.ca	37	9	90342599	90342599	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTSL1	NM_145918	exon2	c.A81G	p.A27A	.	.	69	4	81	0	.	93
CTSL2	1515	bcgsc.ca	37	9	99799890	99799890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTSL2	NM_001201575	exon3	c.A134G	p.E45G	.	.	68	5	119	0	.	90
CTSZ	1522	bcgsc.ca	37	20	57581413	57581413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CTSZ	NM_001336	exon2	c.T271C	p.S91P	.	.	22	3	30	0	.	226
CUBN	8029	bcgsc.ca	37	10	17110231	17110231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUBN	NM_001081	exon21	c.G2840T	p.G947V	.	.	105	7	139	1	.	166
CUL2	8453	bcgsc.ca	37	10	35314063	35314063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL2	NM_001198778	exon17	c.A1738T	p.T580S	.	.	157	5	128	0	.	229
CUL2	8453	bcgsc.ca	37	10	35314075	35314075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL2	NM_001198778	exon17	c.C1726A	p.H576N	.	.	149	6	131	2	.	229
CUL3	8452	bcgsc.ca	37	2	225338966	225338966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL3	NM_001257198	exon16	c.C2321A	p.A774E	.	.	117	5	108	0	.	229
CUL3	8452	bcgsc.ca	37	2	225360554	225360554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL3	NM_001257198	exon13	c.T1855C	p.F619L	.	.	70	4	59	0	.	229
CUL7	9820	ucsc.edu;bcgsc.ca	37	6	43016296	43016296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL7	NM_001168370	exon8	c.C2089A	p.P697T	.	.	39	4	50	0	.	229
CUL9	23113	bcgsc.ca	37	6	43188242	43188242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL9	NM_015089	exon32	c.G6328A	p.V2110I	.	.	76	5	98	1	.	529
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43174080	43174080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CUL9	NM_015089	exon26	c.G5044T	p.A1682S	.	.	34	4	24	0	.	529
CWC27	10283	bcgsc.ca	37	5	64079741	64079741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CWC27	NM_005869	exon4	c.A331G	p.S111G	.	.	59	4	39	0	.	90
CXCL16	58191	ucsc.edu;bcgsc.ca	37	17	4642567	4642567	+	Missense_Mutation	SNP	A	A	G	rs143565057		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CXCL16	NM_022059	exon1	c.T125C	p.L42P	.	.	43	5	59	0	A|1.000;G|0.000	226
CXCR1	3577	bcgsc.ca	37	2	219029360	219029360	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CXCR1	NM_000634	exon2	c.G575T	p.G192V	.	.	76	4	60	0	.	658
CYB561D2	11068	bcgsc.ca	37	3	50391103	50391103	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYB561D2	NM_007022	exon4	c.T597C	p.P199P	.	.	24	3	44	0	.	278
CYBA	1535	ucsc.edu;bcgsc.ca	37	16	88713203	88713203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYBA	NM_000101	exon4	c.T247C	p.F83L	.	.	16	4	21	0	.	90
CYFIP2	26999	ucsc.edu	37	5	156766131	156766131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYFIP2	NM_001037332	exon22	c.G2452T	p.D818Y	.	.	50	4	39	0	.	22
CYP19A1	1588	bcgsc.ca	37	15	51507407	51507407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP19A1	NM_031226	exon9	c.A881G	p.E294G	.	.	92	5	73	0	.	93
CYP2B7P1	1556	bcgsc.ca	37	19	41444984	41444984	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	CYP2B7P1,NS,malignant_melanoma,-2	CYP2B7P1	.	.	.	.	.	.	50	4	32	0	.	70
CYP2C9	1559	bcgsc.ca	37	10	96741019	96741019	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP2C9	NM_000771	exon7	c.C1041T	p.Y347Y	.	.	53	4	54	0	.	96
CYP4F2	8529	bcgsc.ca	37	19	15997111	15997111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP4F2	NM_001082	exon8	c.A926G	p.D309G	.	.	47	5	55	0	.	92
CYP4X1	260293	bcgsc.ca	37	1	47501783	47501783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP4X1	NM_178033	exon6	c.A715G	p.K239E	.	.	76	4	65	0	.	92
CYP4Z1	199974	ucsc.edu;bcgsc.ca	37	1	47533245	47533245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	CYP4Z1	NM_178134	exon1	c.A83G	p.Q28R	.	.	52	4	51	0	.	91
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15461	15461	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	ENST00000361789	exon1	c.T715C	p.L239L	.	.	273	23	186	0	.	.
DACH1	1602	bcgsc.ca	37	13	72147029	72147029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DACH1	NM_080759	exon4	c.G1248A	p.M416I	.	.	73	4	95	0	.	135
DCAF12L1	139170	bcgsc.ca	37	X	125685398	125685398	+	Silent	SNP	T	T	A	rs188288159	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCAF12L1	NM_178470	exon1	c.A1194T	p.A398A	.	.	58	4	95	0	T|0.999;C|0.001	132
DCAF17	80067	bcgsc.ca	37	2	172305296	172305296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCAF17	NM_001164821	exon4	c.A427G	p.K143E	.	.	157	7	151	0	.	90
DCAF8L1	139425	bcgsc.ca	37	X	27997771	27997771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCAF8L1	NM_001017930	exon1	c.C1681A	p.Q561K	.	.	127	7	173	1	.	112
DCHS2	54798	bcgsc.ca	37	4	155256191	155256191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCHS2	NM_001142552	exon4	c.G2542T	p.A848S	.	.	63	4	68	0	.	94
DCK	1633	ucsc.edu;bcgsc.ca	37	4	71888086	71888086	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCK	NM_000788	exon3	c.A210G	p.E70E	.	.	39	4	63	0	.	116
DCLK2	166614	bcgsc.ca	37	4	151023771	151023771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCLK2	NM_001040260	exon2	c.A563G	p.K188R	.	.	83	5	80	0	.	300
DCLK2	166614	bcgsc.ca	37	4	151119188	151119188	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCLK2	NM_001040260	exon4	c.C894A	p.S298S	.	.	86	4	118	0	.	300
DCLRE1C	64421	bcgsc.ca	37	10	14976716	14976716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCLRE1C	NM_001033855	exon7	c.C523A	p.Q175K	.	.	73	4	90	0	.	228
DCSTAMP	81501	bcgsc.ca	37	8	105360834	105360834	+	Silent	SNP	C	C	T	rs150364969		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001257317	exon2	c.C54T	p.Y18Y	.	.	126	5	98	0	C|1.000;T|0.000	.
DCSTAMP	81501	bcgsc.ca	37	8	105361557	105361557	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001257317	exon2	c.A777G	p.R259R	.	.	58	5	45	0	.	.
DCTD	1635	bcgsc.ca	37	4	183814275	183814275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCTD	NM_001012732	exon5	c.A400G	p.K134E	.	.	85	4	102	0	.	90
DCX	1641	ucsc.edu;bcgsc.ca	37	X	110644538	110644538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DCX	NM_000555	exon3	c.T628C	p.S210P	.	.	52	5	44	0	.	554
DDX20	11218	bcgsc.ca	37	1	112303644	112303644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX20	NM_007204	exon6	c.C859A	p.P287T	.	.	77	4	83	0	.	227
DDX39A	10212	bcgsc.ca	37	19	14521969	14521969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX39A	NM_005804	exon5	c.G445T	p.G149C	.	.	12	3	18	0	.	226
DDX46	9879	bcgsc.ca	37	5	134154694	134154694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX46	NM_014829	exon21	c.A2974G	p.S992G	.	.	86	5	53	0	.	227
DDX5	1655	bcgsc.ca	37	17	62500144	62500144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX5	NM_004396	exon4	c.A398G	p.D133G	.	.	81	4	68	1	.	228
DDX60	55601	bcgsc.ca	37	4	169188844	169188844	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX60	NM_017631	exon23	c.2930-2A>T	.	.	.	152	5	187	1	.	25
DDX60	55601	bcgsc.ca	37	4	169201639	169201639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DDX60	NM_017631	exon14	c.G1825A	p.E609K	.	.	149	6	137	0	.	25
DECR1	1666	bcgsc.ca	37	8	91063957	91063957	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DECR1	NM_001359	exon9	c.A938G	p.D313G	.	.	147	7	144	0	.	90
DENND5B	160518	bcgsc.ca	37	12	31648831	31648831	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DENND5B	NM_144973	exon2	c.T150C	p.P50P	.	.	78	4	73	0	.	24
DHX40	79665	bcgsc.ca	37	17	57644002	57644002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DHX40	NM_024612	exon2	c.A127G	p.T43A	.	.	80	4	66	0	.	226
DHX58	79132	ucsc.edu	37	17	40256926	40256926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DHX58	NM_024119	exon11	c.C1421T	p.A474V	.	.	28	4	18	0	.	90
DHX9	1660	bcgsc.ca	37	1	182853771	182853771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DHX9	NM_001357	exon27	c.A3284G	p.E1095G	.	.	69	4	42	0	.	92
DIAPH1	1729	bcgsc.ca	37	5	140958762	140958762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DIAPH1	NM_005219	exon9	c.A826G	p.N276D	.	.	75	5	62	0	.	91
DIAPH3	81624	bcgsc.ca	37	13	60485891	60485891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DIAPH3	NM_001042517	exon20	c.A2345G	p.E782G	.	.	82	4	101	0	.	516
DLGAP1	9229	bcgsc.ca	37	18	3502550	3502550	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DLGAP1	NM_001242761	exon12	c.G2665T	p.D889Y	.	.	155	5	151	0	.	229
DMD	1756	bcgsc.ca	37	X	31792225	31792225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DMD	NM_004006	exon51	c.T7394C	p.L2465S	.	.	65	4	67	0	.	265
DMXL1	1657	bcgsc.ca	37	5	118582782	118582782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DMXL1	NM_005509	exon43	c.G8952A	p.M2984I	.	.	109	5	79	0	.	92
DNA2	1763	bcgsc.ca	37	10	70182597	70182597	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080449	exon15	c.T2259A	p.R753R	.	.	66	4	60	0	.	.
DNAH14	127602	bcgsc.ca	37	1	225340452	225340452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH14	NM_001373	exon32	c.T5012C	p.V1671A	.	.	81	4	58	0	.	23
DNAH14	127602	bcgsc.ca	37	1	225533892	225533892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH14	NM_001373	exon68	c.A10628G	p.Q3543R	.	.	79	4	103	0	.	23
DNAH3	55567	bcgsc.ca	37	16	21033345	21033345	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH3	NM_017539	exon40	c.A5724G	p.T1908T	.	.	76	4	50	0	.	167
DNAH3	55567	bcgsc.ca	37	16	21053485	21053485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH3	NM_017539	exon32	c.T4502C	p.I1501T	.	.	42	4	28	0	.	167
DNAH3	55567	bcgsc.ca	37	16	21082037	21082037	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH3	NM_017539	exon22	c.A3195G	p.E1065E	.	.	185	6	189	0	.	167
DNAH6	1768	bcgsc.ca	37	2	85041109	85041109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH6	NM_001370	exon75	c.C12013G	p.H4005D	.	.	68	4	38	0	.	69
DNAH7	56171	bcgsc.ca	37	2	196849427	196849427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAH7	NM_018897	exon15	c.G1762T	p.D588Y	.	.	48	4	45	0	.	102
DNAJC10	54431	bcgsc.ca	37	2	183582842	183582842	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAJC10	NM_001271581	exon3	c.A29T	p.Y10F	.	.	74	4	78	0	.	273
DNAJC2	27000	bcgsc.ca	37	7	102982349	102982349	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAJC2	NM_001129887	exon2	c.T117A	p.V39V	.	.	92	4	108	0	.	158
DNAJC3	5611	bcgsc.ca	37	13	96410006	96410006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNAJC3	NM_006260	exon5	c.G502A	p.G168R	.	.	72	4	90	0	.	226
DNHD1	144132	bcgsc.ca	37	11	6580442	6580442	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNHD1	NM_144666	exon28	c.C9448T	p.L3150L	.	.	75	4	101	0	.	24
DNHD1	144132	ucsc.edu;bcgsc.ca	37	11	6579218	6579218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNHD1	NM_144666	exon25	c.A8693G	p.H2898R	.	.	53	4	58	0	.	24
DNTT	1791	bcgsc.ca	37	10	98097902	98097902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DNTT	NM_004088	exon11	c.T1451C	p.F484S	.	.	69	4	99	0	.	228
DOCK1	1793	bcgsc.ca	37	10	129172367	129172367	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK1	NM_001380	exon35	c.A3501G	p.G1167G	.	.	64	4	56	0	.	698
DOCK3	1795	bcgsc.ca	37	3	51395398	51395398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK3	NM_004947	exon46	c.G4774A	p.V1592I	.	.	52	4	57	0	.	22
DOCK3	1795	bcgsc.ca	37	3	51395439	51395439	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK3	NM_004947	exon46	c.C4815T	p.H1605H	.	.	62	4	55	0	.	22
DOCK3	1795	ucsc.edu;bcgsc.ca	37	3	51395251	51395251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK3	NM_004947	exon45	c.C4746A	p.L1582L	.	.	34	4	36	0	.	22
DOCK4	9732	bcgsc.ca	37	7	111541755	111541755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DOCK4	NM_014705	exon14	c.A1295G	p.D432G	.	.	53	4	36	0	.	26
DPCR1	135656	ucsc.edu	37	6	30918388	30918388	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DPCR1	NM_080870	exon2	c.T2147C	p.L716P	.	.	175	22	199	2	.	90
DPM1	8813	bcgsc.ca	37	20	49551699	49551699	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DPM1	NM_003859	exon9	c.A753G	p.K251K	.	.	138	5	121	0	.	91
DPYD	1806	bcgsc.ca	37	1	98144729	98144729	+	Missense_Mutation	SNP	C	C	T	rs141726921		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DPYD	NM_000110	exon8	c.G772A	p.G258S	.	.	100	5	91	0	C|1.000;T|0.000	278
DSC1	1823	bcgsc.ca	37	18	28719764	28719764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DSC1	NM_004948	exon11	c.C1610A	p.S537Y	.	.	176	6	106	0	.	94
DSN1	79980	bcgsc.ca	37	20	35395243	35395243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DSN1	NM_001145315	exon5	c.T431C	p.F144S	.	.	77	4	100	0	.	92
DSTN	11034	bcgsc.ca	37	20	17585221	17585221	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DSTN	NM_006870	exon3	c.G333A	p.L111L	.	.	97	4	78	0	.	154
DUSP12	11266	bcgsc.ca	37	1	161726678	161726678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DUSP12	NM_007240	exon6	c.A964G	p.N322D	.	.	67	4	96	0	.	226
DYNC1H1	1778	bcgsc.ca	37	14	102460627	102460627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DYNC1H1	NM_001376	exon12	c.T3122C	p.M1041T	.	.	88	4	85	0	.	98
DYNC1H1	1778	bcgsc.ca	37	14	102468003	102468003	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DYNC1H1	NM_001376	exon21	c.C4527T	p.L1509L	.	.	59	4	94	0	.	98
DZIP3	9666	bcgsc.ca	37	3	108366798	108366798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	DZIP3	NM_014648	exon16	c.A1801G	p.I601V	.	.	89	4	94	0	.	91
EBF2	64641	bcgsc.ca	37	8	25745430	25745430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EBF2	NM_022659	exon9	c.G810T	p.M270I	.	.	57	5	65	0	.	26
ECM2	1842	bcgsc.ca	37	9	95285080	95285080	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ECM2	NM_001393	exon2	c.A69G	p.E23E	.	.	49	4	99	0	.	131
ECT2	1894	bcgsc.ca	37	3	172501646	172501646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ECT2	NM_001258315	exon16	c.G1675A	p.E559K	.	.	158	6	181	0	.	724
EDC3	80153	bcgsc.ca	37	15	74925208	74925208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EDC3	NM_001142444	exon8	c.G1272T	p.W424C	.	.	96	5	67	0	.	91
EDEM3	80267	bcgsc.ca	37	1	184701969	184701969	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EDEM3	NM_025191	exon7	c.612+2T>A	.	.	.	65	5	89	0	.	91
EDEM3	80267	bcgsc.ca	37	1	184706774	184706774	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EDEM3	NM_025191	exon3	c.T276C	p.S92S	.	.	51	4	45	0	.	91
EEA1	8411	bcgsc.ca	37	12	93244941	93244941	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EEA1	NM_003566	exon9	c.T744A	p.S248S	.	.	136	5	116	0	.	229
EEF1A2	1917	bcgsc.ca	37	20	62124631	62124631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EEF1A2	NM_001958	exon5	c.T631C	p.F211L	.	.	57	4	67	0	.	90
EFCAB6	64800	bcgsc.ca	37	22	44004426	44004426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EFCAB6	NM_022785	exon22	c.A2617G	p.K873E	.	.	92	6	131	0	.	97
EFR3A	23167	bcgsc.ca	37	8	133023113	133023113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EFR3A	NM_015137	exon23	c.A2437G	p.M813V	.	.	69	4	63	0	.	139
EGF	1950	bcgsc.ca	37	4	110897348	110897348	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EGF	NM_001963	exon13	c.T2010C	p.N670N	.	.	77	4	70	0	.	524
EGF	1950	bcgsc.ca	37	4	110909016	110909016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EGF	NM_001963	exon17	c.G2608T	p.D870Y	.	.	63	4	62	0	.	524
EHBP1	23301	bcgsc.ca	37	2	63170025	63170025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EHBP1	NM_015252	exon12	c.A1463G	p.D488G	.	.	93	4	83	0	.	154
EIF2AK4	440275	bcgsc.ca	37	15	40289267	40289267	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF2AK4	NM_001013703	exon19	c.2868+1G>A	.	.	.	142	5	149	0	.	757
EIF2B4	8890	bcgsc.ca	37	2	27589664	27589664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF2B4	NM_172195	exon10	c.T1213C	p.Y405H	.	.	64	4	75	0	.	90
EIF2B5	8893	bcgsc.ca	37	3	183859732	183859732	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF2B5	NM_003907	exon8	c.C1176T	p.D392D	.	.	50	4	43	0	.	95
EIF3A	8661	bcgsc.ca	37	10	120797831	120797831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF3A	NM_003750	exon20	c.G3647A	p.R1216Q	.	.	160	5	290	0	.	226
EIF3M	10480	ucsc.edu;bcgsc.ca	37	11	32610277	32610277	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF3M	NM_006360	exon3	c.T313C	p.L105L	.	.	40	4	51	0	.	155
EIF4B	1975	bcgsc.ca	37	12	53412615	53412615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF4B	NM_001417	exon3	c.T185C	p.V62A	.	.	60	4	47	0	.	568
EIF4G3	8672	bcgsc.ca	37	1	21307586	21307586	+	Silent	SNP	G	G	A	rs143618519		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF4G3	NM_001198803	exon9	c.C198T	p.P66P	.	.	57	4	54	0	G|1.000;A|0.000	91
EIF5A2	56648	bcgsc.ca	37	3	170612155	170612155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EIF5A2	NM_020390	exon4	c.G328A	p.E110K	.	.	57	4	95	0	.	90
ELOVL3	83401	bcgsc.ca	37	10	103988197	103988197	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ELOVL3	NM_152310	exon3	c.G257T	p.W86L	.	.	41	4	70	0	.	92
ELOVL4	6785	bcgsc.ca	37	6	80636085	80636085	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ELOVL4	NM_022726	exon2	c.A114G	p.E38E	.	.	67	5	52	0	.	92
ELP4	26610	bcgsc.ca	37	11	31625337	31625337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ELP4	NM_019040	exon5	c.G536T	p.R179I	.	.	115	5	84	0	.	948
EMC2	9694	bcgsc.ca	37	8	109468132	109468132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_014673	exon5	c.G336T	p.R112S	.	.	155	6	65	0	.	.
EML5	161436	bcgsc.ca	37	14	89181370	89181370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EML5	NM_183387	exon9	c.T1357C	p.F453L	.	.	73	4	69	0	.	93
EMR3	84658	bcgsc.ca	37	19	14758026	14758026	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EMR3	NM_032571	exon8	c.C849A	p.S283S	.	.	60	4	75	0	.	528
EN2	2020	bcgsc.ca	37	7	155255252	155255252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EN2	NM_001427	exon2	c.G872T	p.W291L	.	.	52	4	56	0	.	90
ENDOD1	23052	bcgsc.ca	37	11	94862643	94862643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ENDOD1	NM_015036	exon2	c.A1403G	p.D468G	.	.	242	7	281	0	.	68
ENPEP	2028	bcgsc.ca	37	4	111436563	111436563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ENPEP	NM_001977	exon8	c.T1474C	p.W492R	.	.	98	4	105	0	.	157
EP300	2033	bcgsc.ca	37	22	41553214	41553214	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EP300	NM_001429	exon18	c.C3303T	p.T1101T	.	.	82	4	136	0	.	2011
EPHA1	2041	bcgsc.ca	37	7	143098652	143098652	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHA1	NM_005232	exon3	c.A197T	p.Y66F	.	.	77	4	98	0	.	1436
EPHA7	2045	ucsc.edu;bcgsc.ca	37	6	93973601	93973601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHA7	NM_004440	exon9	c.G1775A	p.G592D	.	.	14	4	21	0	.	1453
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23232519	23232519	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon10	c.A1808T	p.Y603F	.	.	41	4	43	0	.	1381
EPHB2	2048	ucsc.edu;bcgsc.ca	37	1	23234452	23234452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPHB2	NM_004442	exon12	c.G2146A	p.D716N	.	.	43	4	61	0	.	1381
EPS8L1	54869	bcgsc.ca	37	19	55591079	55591079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPS8L1	NM_133180	exon5	c.G139T	p.G47C	.	.	47	4	52	0	.	115
EPS8L3	79574	ucsc.edu;bcgsc.ca	37	1	110301155	110301155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EPS8L3	NM_139053	exon7	c.C595A	p.L199I	.	.	48	4	48	0	.	93
EQTN	54586	bcgsc.ca	37	9	27286327	27286327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_020641	exon7	c.A515G	p.Q172R	.	.	67	4	75	0	.	.
ERAP2	64167	bcgsc.ca	37	5	96215887	96215887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERAP2	NM_001130140	exon2	c.G498A	p.M166I	.	.	74	4	51	0	.	68
ERBB2IP	55914	bcgsc.ca	37	5	65288582	65288582	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERBB2IP	NM_001253701	exon3	c.A36G	p.V12V	.	.	57	4	49	0	.	653
ERCC4	2072	bcgsc.ca	37	16	14041708	14041708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERCC4	NM_005236	exon11	c.A2255T	p.Y752F	.	.	85	4	50	0	.	665
ERCC6	2074	bcgsc.ca	37	10	50679076	50679076	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERCC6	NM_000124	exon17	c.T3015A	p.H1005Q	.	.	60	6	65	0	.	1153
ERCC6L2	375748	bcgsc.ca	37	9	98678714	98678714	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001010895	exon6	c.C1189A	p.R397R	.	.	35	4	41	0	.	.
ERCC6L	54821	bcgsc.ca	37	X	71425706	71425706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERCC6L	NM_017669	exon2	c.T2911C	p.S971P	.	.	87	4	111	0	.	93
ERCC6L	54821	bcgsc.ca	37	X	71427746	71427746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERCC6L	NM_017669	exon2	c.G871A	p.E291K	.	.	132	5	100	0	.	93
ERMP1	79956	bcgsc.ca	37	9	5830941	5830941	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERMP1	NM_024896	exon2	c.A426G	p.E142E	.	.	73	4	92	0	.	69
ERO1LB	56605	bcgsc.ca	37	1	236389686	236389686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ERO1LB	NM_019891	exon12	c.G935A	p.R312Q	.	.	87	5	73	0	.	90
ESYT3	83850	bcgsc.ca	37	3	138195118	138195118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ESYT3	NM_031913	exon21	c.C2522T	p.A841V	.	.	75	4	91	0	.	90
EVC2	132884	ucsc.edu;bcgsc.ca	37	4	5620323	5620323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EVC2	NM_147127	exon15	c.A2588G	p.D863G	.	.	38	4	52	0	.	155
EVI5	7813	bcgsc.ca	37	1	93170145	93170145	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EVI5	NM_005665	exon3	c.A438G	p.E146E	.	.	50	5	64	0	.	136
EXOC4	60412	bcgsc.ca	37	7	133502236	133502236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EXOC4	NM_021807	exon11	c.T1673C	p.L558S	.	.	58	4	34	0	.	159
EXOC6B	23233	bcgsc.ca	37	2	72802622	72802622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EXOC6B	NM_015189	exon7	c.A845G	p.E282G	.	.	78	5	37	0	.	68
EXOG	9941	ucsc.edu;bcgsc.ca	37	3	38565778	38565778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EXOG	NM_005107	exon6	c.G1032T	p.M344I	.	.	47	4	59	0	.	90
EYS	346007	bcgsc.ca	37	6	64472368	64472368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	EYS	NM_001142800	exon41	c.T8057C	p.I2686T	.	.	74	5	73	0	.	660
F8	2157	bcgsc.ca	37	X	154157906	154157906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	F8	NM_000132	exon14	c.T4159C	p.S1387P	.	.	87	5	111	1	.	182
FADS1	3992	bcgsc.ca	37	11	61572197	61572197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FADS1	NM_013402	exon7	c.G1013T	p.W338L	.	.	57	4	33	0	.	90
FADS2	9415	bcgsc.ca	37	11	61615753	61615753	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FADS2	NM_004265	exon5	c.C741A	p.I247I	.	.	63	4	91	0	.	92
FAM127C	441518	bcgsc.ca	37	X	134156182	134156182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM127C	NM_001078173	exon1	c.G308T	p.R103L	.	.	73	5	75	0	.	62
FAM149B1	317662	bcgsc.ca	37	10	74995001	74995001	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_173348	exon12	c.T1527C	p.P509P	.	.	54	4	55	0	.	.
FAM160B1	57700	bcgsc.ca	37	10	116605211	116605211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM160B1	NM_020940	exon8	c.T1099C	p.C367R	.	.	65	4	94	0	.	91
FAM160B1	57700	ucsc.edu;bcgsc.ca	37	10	116593104	116593104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM160B1	NM_020940	exon3	c.G237A	p.M79I	.	.	41	4	50	0	.	91
FAM173A	65990	bcgsc.ca	37	16	771679	771679	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM173A	NM_001271285	exon2	c.C244T	p.L82L	.	.	65	5	61	0	.	91
FAM178A	55719	bcgsc.ca	37	10	102716232	102716232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001136123	exon18	c.G3355T	p.A1119S	.	.	56	5	124	0	.	.
FAM183B	340286	bcgsc.ca	37	7	38725309	38725309	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	93	7	117	0	.	.
FAM186A	121006	bcgsc.ca	37	12	50749643	50749643	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM186A	NM_001145475	exon4	c.A972G	p.E324E	.	.	111	5	89	0	.	68
FAM186A	121006	bcgsc.ca	37	12	50756947	50756947	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM186A	NM_001145475	exon2	c.G393A	p.L131L	.	.	72	4	58	0	.	68
FAM186A	121006	bcgsc.ca	37	12	50757061	50757061	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM186A	NM_001145475	exon2	c.A279G	p.E93E	.	.	70	4	46	0	.	68
FAM227B	196951	bcgsc.ca	37	15	49800481	49800481	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_152647	exon11	c.T939C	p.I313I	.	.	212	6	152	0	.	.
FAM3A	60343	ucsc.edu;bcgsc.ca	37	X	153735768	153735768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM3A	NM_001171132	exon8	c.T439C	p.F147L	.	.	26	4	50	0	.	130
FAM3B	54097	bcgsc.ca	37	21	42710393	42710393	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM3B	NM_058186	exon3	c.A252G	p.R84R	.	.	60	4	38	1	.	90
FAM45A	404636	bcgsc.ca	37	10	120867673	120867673	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM45A	NM_207009	exon2	c.A249G	p.K83K	.	.	107	5	163	0	.	91
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149594	34149594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM47A	NM_203408	exon1	c.G802T	p.D268Y	.	.	102	56	66	0	.	134
FAM57B	83723	bcgsc.ca	37	16	30036615	30036615	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM57B	NM_031478	exon5	c.T714C	p.A238A	.	.	59	4	90	0	.	90
FAM63A	55793	ucsc.edu;bcgsc.ca	37	1	150975098	150975098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM63A	NM_001163258	exon3	c.T140C	p.L47S	.	.	33	4	31	0	.	91
FAM76A	199870	bcgsc.ca	37	1	28059114	28059114	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM76A	NM_001143914	exon3	c.T147A	p.S49R	.	.	68	4	74	1	.	90
FAM83A	84985	bcgsc.ca	37	8	124204150	124204150	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM83A	NM_032899	exon2	c.A588G	p.G196G	.	.	132	6	114	0	.	229
FAM83B	222584	bcgsc.ca	37	6	54806364	54806364	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM83B	NM_001010872	exon5	c.A2595G	p.K865K	.	.	54	4	52	0	.	96
FAM86DP	692099	bcgsc.ca	37	3	75482001	75482001	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	79	4	83	0	.	.
FAM98A	25940	bcgsc.ca	37	2	33810701	33810701	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAM98A	NM_015475	exon7	c.A784T	p.T262S	.	.	61	4	58	0	.	91
FANCB	2187	bcgsc.ca	37	X	14883533	14883533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FANCB	NM_152633	exon2	c.G100T	p.D34Y	.	.	74	4	84	0	.	562
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	98896771	98896771	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_001001715	exon3	c.A198G	p.K66K	.	.	39	4	32	0	.	290
FARP1	10160	ucsc.edu;bcgsc.ca	37	13	99091413	99091413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FARP1	NM_005766	exon21	c.T2396C	p.F799S	.	.	31	4	56	0	.	290
FASTKD2	22868	bcgsc.ca	37	2	207652754	207652754	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FASTKD2	NM_001136193	exon9	c.C1688T	p.P563L	.	.	22	3	29	0	.	118
FAT4	79633	bcgsc.ca	37	4	126239670	126239670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAT4	NM_024582	exon1	c.G2104A	p.E702K	.	.	60	4	50	0	.	108
FAT4	79633	bcgsc.ca	37	4	126370188	126370188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FAT4	NM_024582	exon9	c.C8017T	p.P2673S	.	.	95	4	75	0	.	108
FBXL14	144699	ucsc.edu;bcgsc.ca	37	12	1702850	1702850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXL14	NM_152441	exon1	c.A383G	p.K128R	.	.	53	5	67	0	.	227
FBXO28	23219	bcgsc.ca	37	1	224340854	224340854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXO28	NM_015176	exon4	c.A527G	p.E176G	.	.	50	4	50	0	.	661
FBXO8	26269	bcgsc.ca	37	4	175184092	175184092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXO8	NM_012180	exon2	c.T152C	p.I51T	.	.	125	6	105	0	.	290
FBXW11	23291	bcgsc.ca	37	5	171295723	171295723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXW11	NM_012300	exon12	c.G1545T	p.L515F	.	.	88	5	73	0	.	272
FBXW11	23291	bcgsc.ca	37	5	171327055	171327055	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXW11	NM_012300	exon4	c.C423T	p.A141A	.	.	94	4	45	0	.	272
FBXW7	55294	bcgsc.ca	37	4	153273772	153273772	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FBXW7	NM_018315	exon1	c.C111T	p.S37S	.	.	44	4	44	0	.	6296
FCN3	8547	bcgsc.ca	37	1	27695757	27695757	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FCN3	NM_003665	exon8	c.C870T	p.P290P	.	.	34	4	31	0	.	90
FER1L5	90342	bcgsc.ca	37	2	97315985	97315985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FER1L5	NM_001113382	exon6	c.A463G	p.T155A	.	.	53	4	53	0	.	23
FER1L6	654463	bcgsc.ca	37	8	125061943	125061943	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FER1L6	NM_001039112	exon22	c.C2820A	p.I940I	.	.	143	5	126	0	.	100
FGD4	121512	bcgsc.ca	37	12	32735154	32735154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGD4	NM_139241	exon4	c.C353A	p.A118D	.	.	86	4	75	0	.	229
FGF3	2248	bcgsc.ca	37	11	69625257	69625257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGF3	NM_005247	exon3	c.T536C	p.L179P	.	.	55	4	68	0	.	847
FGF3	2248	ucsc.edu;bcgsc.ca	37	11	69631167	69631167	+	Missense_Mutation	SNP	T	T	C	rs146864055		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGF3	NM_005247	exon2	c.A245G	p.E82G	.	.	43	4	66	0	.	847
FGFR1OP	11116	bcgsc.ca	37	6	167453458	167453458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGFR1OP	NM_007045	exon13	c.G1192C	p.V398L	.	.	47	4	48	0	.	683
FGFR2	2263	bcgsc.ca	37	10	123256129	123256129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGFR2	NM_022970	exon13	c.C1783T	p.P595S	.	.	17	3	35	0	.	2607
FGG	2266	bcgsc.ca	37	4	155529697	155529697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGG	NM_000509	exon7	c.A772G	p.K258E	.	.	70	5	81	0	.	90
FGR	2268	ucsc.edu;bcgsc.ca	37	1	27942344	27942344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FGR	NM_001042729	exon8	c.G694A	p.G232R	.	.	48	4	59	0	.	547
FIBCD1	84929	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133787241	133787241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FIBCD1	NM_001145106	exon6	c.T884C	p.F295S	.	.	24	11	38	0	.	90
FKBP5	2289	bcgsc.ca	37	6	35586918	35586918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FKBP5	NM_001145775	exon6	c.A463G	p.K155E	.	.	126	5	128	0	.	227
FLG	2312	bcgsc.ca	37	1	152287856	152287856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLG	NM_002016	exon2	c.A77G	p.D26G	.	.	148	6	160	0	.	106
FLJ35282	0	bcgsc.ca	37	9	22748227	22748227	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	27	4	32	0	.	.
FLJ46066	0	bcgsc.ca	37	3	182178590	182178590	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	79	4	81	0	.	.
FLNB	2317	bcgsc.ca	37	3	58112395	58112395	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLNB	NM_001457	exon24	c.A4128G	p.R1376R	.	.	65	4	93	0	.	593
FLT1	2321	ucsc.edu;bcgsc.ca	37	13	28896449	28896449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLT1	NM_002019	exon22	c.T3001C	p.S1001P	.	.	35	4	42	0	.	1406
FLT3	2322	bcgsc.ca	37	13	28609734	28609734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FLT3	NM_004119	exon12	c.A1495G	p.S499G	.	.	42	4	74	0	.	42117
FNDC1	84624	bcgsc.ca	37	6	159618530	159618530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FNDC1	NM_032532	exon2	c.G177T	p.W59C	.	.	33	4	50	0	.	138
FNIP1	96459	bcgsc.ca	37	5	131008264	131008264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FNIP1	NM_133372	exon14	c.A1873G	p.I625V	.	.	71	4	49	0	.	92
FOXK1	221937	ucsc.edu;bcgsc.ca	37	7	4798690	4798690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FOXK1	NM_001037165	exon6	c.C1253T	p.P418L	.	.	33	4	38	0	.	516
FREM2	341640	bcgsc.ca	37	13	39262095	39262095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FREM2	NM_207361	exon1	c.T614C	p.L205P	.	.	23	4	53	0	.	100
FREM2	341640	bcgsc.ca	37	13	39266310	39266310	+	Missense_Mutation	SNP	A	A	G	rs142108180		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FREM2	NM_207361	exon1	c.A4829G	p.E1610G	.	.	65	4	62	0	A|1.000;G|0.000	100
FRMD4B	23150	bcgsc.ca	37	3	69273797	69273797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FRMD4B	NM_015123	exon8	c.C626T	p.P209L	.	.	124	5	172	0	.	72
FRRS1	391059	bcgsc.ca	37	1	100174477	100174477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FRRS1	NM_001013660	exon17	c.G1858A	p.G620R	.	.	81	4	56	0	.	91
FRRS1	391059	ucsc.edu;bcgsc.ca	37	1	100194140	100194140	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FRRS1	NM_001013660	exon9	c.C915T	p.F305F	.	.	50	5	57	3	.	91
FRZB	2487	bcgsc.ca	37	2	183699688	183699688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FRZB	NM_001463	exon6	c.G866T	p.W289L	.	.	67	6	82	0	.	948
FSCB	84075	bcgsc.ca	37	14	44975614	44975614	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FSCB	NM_032135	exon1	c.A577G	p.S193G	.	.	83	4	89	0	.	587
FSTL5	56884	bcgsc.ca	37	4	162459363	162459363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FSTL5	NM_020116	exon10	c.G1267A	p.E423K	.	.	83	6	60	0	.	158
FSTL5	56884	bcgsc.ca	37	4	162459410	162459410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FSTL5	NM_020116	exon10	c.A1220G	p.D407G	.	.	68	4	63	0	.	158
FUBP1	8880	bcgsc.ca	37	1	78429260	78429260	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FUBP1	NM_003902	exon13	c.A1182G	p.K394K	.	.	96	4	93	0	.	227
FYB	2533	bcgsc.ca	37	5	39108356	39108356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FYB	NM_001243093	exon18	c.A2474G	p.E825G	.	.	112	6	98	0	.	24
FYB	2533	bcgsc.ca	37	5	39202544	39202544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FYB	NM_001243093	exon2	c.G549T	p.L183F	.	.	164	6	187	1	.	24
FZR1	51343	bcgsc.ca	37	19	3534455	3534455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	FZR1	NM_001136198	exon12	c.G1384T	p.A462S	.	.	54	5	73	0	.	227
GABBR1	2550	bcgsc.ca	37	6	29572730	29572730	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABBR1	NM_001470	exon21	c.T2475C	p.I825I	.	.	52	4	43	0	.	521
GABBR1	2550	ucsc.edu;bcgsc.ca	37	6	29576390	29576390	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABBR1	NM_001470	exon16	c.T1980C	p.P660P	.	.	39	4	41	0	.	521
GABRA1	2554	bcgsc.ca	37	5	161317904	161317904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABRA1	NM_001127643	exon9	c.G704T	p.G235V	.	.	55	5	39	0	.	93
GABRA4	2557	bcgsc.ca	37	4	46979096	46979096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABRA4	NM_000809	exon5	c.C559A	p.P187T	.	.	160	6	138	0	.	156
GABRA5	2558	bcgsc.ca	37	15	27188470	27188470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABRA5	NM_001165037	exon10	c.C986T	p.A329V	.	.	48	4	51	0	.	91
GABRR1	2569	bcgsc.ca	37	6	89891674	89891674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABRR1	NM_002042	exon8	c.G899T	p.W300L	.	.	50	4	58	1	.	91
GABRR2	2570	bcgsc.ca	37	6	89975336	89975336	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GABRR2	NM_002043	exon7	c.A885G	p.S295S	.	.	25	3	58	0	.	68
GALC	2581	bcgsc.ca	37	14	88434680	88434680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GALC	NM_000153	exon8	c.T907C	p.S303P	.	.	84	5	74	0	.	90
GALNS	2588	ucsc.edu	37	16	88901673	88901673	+	Missense_Mutation	SNP	G	G	T	rs35232749	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GALNS	NM_000512	exon8	c.C846A	p.F282L	.	.	43	4	47	0	G|0.964;A|0.036	153
GART	2618	bcgsc.ca	37	21	34889332	34889332	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GART	NM_001136005	exon16	c.C2071A	p.P691T	.	.	77	5	67	0	.	91
GAS2L1	10634	ucsc.edu	37	22	29704210	29704210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GAS2L1	NM_152237	exon2	c.G115A	p.A39T	.	.	46	4	92	0	.	90
GBP4	115361	ucsc.edu;bcgsc.ca	37	1	89664501	89664501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GBP4	NM_052941	exon1	c.T17C	p.L6P	.	.	36	4	25	0	.	90
GCNT4	51301	bcgsc.ca	37	5	74325812	74325812	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GCNT4	NM_016591	exon1	c.C51T	p.F17F	.	.	49	4	40	0	.	93
GCOM1	145781	bcgsc.ca	37	15	57924725	57924725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GCOM1	NM_001018090	exon7	c.A772G	p.R258G	.	.	65	4	86	0	.	91
GFM1	85476	bcgsc.ca	37	3	158376761	158376761	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GFM1	NM_024996	exon9	c.A1134T	p.L378L	.	.	50	4	31	0	.	93
GFM2	84340	bcgsc.ca	37	5	74032646	74032646	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GFM2	NM_032380	exon15	c.A1485G	p.E495E	.	.	105	5	87	1	.	90
GH2	2689	bcgsc.ca	37	17	61958219	61958219	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GH2	NM_022557	exon4	c.C369T	p.F123F	.	.	45	5	61	1	.	93
GIGYF2	26058	bcgsc.ca	37	2	233652033	233652033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GIGYF2	NM_001103147	exon11	c.A772G	p.S258G	.	.	88	4	48	0	.	28
GIMAP8	155038	bcgsc.ca	37	7	150164377	150164377	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GIMAP8	NM_175571	exon2	c.A591G	p.G197G	.	.	70	5	53	0	.	95
GLA	2717	bcgsc.ca	37	X	100653397	100653397	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLA	NM_000169	exon6	c.T960C	p.N320N	.	.	88	4	52	0	.	130
GLB1	2720	bcgsc.ca	37	3	33058293	33058293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLB1	NM_000404	exon14	c.C1387A	p.L463M	.	.	71	5	107	0	.	135
GLB1L3	112937	bcgsc.ca	37	11	134177087	134177087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLB1L3	NM_001080407	exon10	c.G946A	p.V316I	.	.	104	5	77	0	.	69
GLB1L3	112937	bcgsc.ca	37	11	134183903	134183903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLB1L3	NM_001080407	exon17	c.A1648G	p.K550E	.	.	45	4	52	0	.	69
GLP2R	9340	bcgsc.ca	37	17	9774090	9774090	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLP2R	NM_004246	exon10	c.T1083C	p.I361I	.	.	111	4	193	0	.	524
GLRA3	8001	bcgsc.ca	37	4	175598394	175598394	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GLRA3	NM_001042543	exon7	c.A762G	p.G254G	.	.	74	4	47	0	.	93
GLTSCR1L	23506	bcgsc.ca	37	6	42790700	42790700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_015349	exon4	c.T118C	p.Y40H	.	.	96	5	107	0	.	.
GLTSCR1L	23506	bcgsc.ca	37	6	42821404	42821404	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_015349	exon7	c.C1974A	p.S658S	.	.	55	5	26	0	.	.
GNA14	9630	bcgsc.ca	37	9	80038984	80038984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GNA14	NM_004297	exon7	c.G979T	p.A327S	.	.	54	5	68	0	.	229
GNE	10020	bcgsc.ca	37	9	36276993	36276993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GNE	NM_001190388	exon1	c.T47C	p.L16P	.	.	32	4	47	0	.	115
GOLGB1	2804	bcgsc.ca	37	3	121417434	121417434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GOLGB1	NM_001256486	exon13	c.A1936G	p.S646G	.	.	94	6	56	0	.	161
GP2	2813	bcgsc.ca	37	16	20331047	20331047	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GP2	NM_001007240	exon7	c.T911C	p.V304A	.	.	163	8	245	0	.	94
GPLD1	2822	bcgsc.ca	37	6	24448220	24448220	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPLD1	NM_001503	exon17	c.T1563C	p.D521D	.	.	66	4	57	0	.	228
GPM6B	2824	bcgsc.ca	37	X	13794388	13794388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPM6B	NM_001001995	exon7	c.G806A	p.C269Y	.	.	74	5	64	0	.	130
GPR112	139378	bcgsc.ca	37	X	135427702	135427702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR112	NM_153834	exon6	c.C1837T	p.P613S	.	.	55	4	47	0	.	183
GPR112	139378	bcgsc.ca	37	X	135428400	135428400	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR112	NM_153834	exon6	c.T2535C	p.T845T	.	.	134	6	119	0	.	183
GPR112	139378	bcgsc.ca	37	X	135430440	135430440	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR112	NM_153834	exon6	c.C4575T	p.S1525S	.	.	54	4	35	0	.	183
GPR180	160897	bcgsc.ca	37	13	95273461	95273461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR180	NM_180989	exon6	c.G866A	p.G289D	.	.	47	4	32	0	.	153
GPR22	2845	bcgsc.ca	37	7	107114657	107114657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR22	NM_005295	exon3	c.A152G	p.E51G	.	.	147	5	111	0	.	92
GPR75-ASB3	100302652	bcgsc.ca	37	2	53956691	53956691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001164165	exon4	c.G486T	p.Q162H	.	.	120	6	83	0	.	.
GPR98	84059	bcgsc.ca	37	5	90050873	90050873	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPR98	NM_032119	exon55	c.A11451G	p.R3817R	.	.	86	4	56	0	.	103
GPRASP1	9737	ucsc.edu;bcgsc.ca	37	X	101911002	101911002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPRASP1	NM_001099411	exon3	c.G2161T	p.G721W	.	.	35	5	41	0	.	131
GPSM2	29899	bcgsc.ca	37	1	109439573	109439573	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GPSM2	NM_013296	exon3	c.A144G	p.E48E	.	.	86	5	77	0	.	227
GRAMD1B	57476	ucsc.edu;bcgsc.ca	37	11	123448232	123448232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRAMD1B	NM_020716	exon2	c.G181T	p.V61L	.	.	42	4	62	0	.	69
GREB1	9687	bcgsc.ca	37	2	11778002	11778002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GREB1	NM_014668	exon31	c.C5507A	p.P1836Q	.	.	43	4	31	0	.	91
GRIK1	2897	bcgsc.ca	37	21	30971174	30971174	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRIK1	NM_175611	exon8	c.T1182C	p.S394S	.	.	62	4	34	0	.	137
GRIK3	2899	bcgsc.ca	37	1	37282666	37282666	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRIK3	NM_000831	exon13	c.T2086C	p.F696L	.	.	62	4	94	0	.	158
GRIN2B	2904	bcgsc.ca	37	12	13716210	13716210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRIN2B	NM_000834	exon13	c.G3962A	p.S1321N	.	.	75	4	111	0	.	231
GRIN2C	2905	bcgsc.ca	37	17	72846856	72846856	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRIN2C	NM_000835	exon5	c.T1164C	p.P388P	.	.	57	4	72	0	.	228
GRK4	2868	bcgsc.ca	37	4	3015542	3015542	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRK4	NM_182982	exon8	c.A728G	p.Q243R	.	.	53	4	74	0	.	507
GRK7	131890	bcgsc.ca	37	3	141499232	141499232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRK7	NM_139209	exon2	c.T629C	p.V210A	.	.	52	5	63	0	.	522
GRM1	2911	bcgsc.ca	37	6	146755654	146755654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRM1	NM_000838	exon9	c.T3307C	p.F1103L	.	.	19	3	39	0	.	1080
GRM2	2912	ucsc.edu	37	3	51746843	51746843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRM2	NM_000839	exon3	c.T805C	p.F269L	.	.	31	4	44	0	.	522
GRM4	2914	broad.mit.edu	37	6	34100971	34100971	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GRM4	NM_001256811	exon2	c.G303A	p.L101L	.	.	55	4	88	0	.	525
GRSF1	2926	bcgsc.ca	37	4	71697351	71697351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_002092	exon5	c.A855G	p.R285R	.	.	66	4	73	0	.	.
GSPT1	2935	bcgsc.ca	37	16	11981486	11981486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GSPT1	NM_002094	exon7	c.C898T	p.H300Y	.	.	121	5	108	0	.	206
GSTA4	2941	bcgsc.ca	37	6	52843309	52843309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GSTA4	NM_001512	exon7	c.G628A	p.E210K	.	.	64	4	42	0	.	90
GTF2E2	2961	bcgsc.ca	37	8	30436520	30436520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF2E2	NM_002095	exon8	c.A794G	p.Q265R	.	.	78	5	82	0	.	90
GTF2IRD1	9569	bcgsc.ca	37	7	73954231	73954231	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF2IRD1	NM_001199207	exon14	c.A1647G	p.E549E	.	.	49	4	42	0	.	94
GTF3C4	9329	bcgsc.ca	37	9	135555003	135555003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF3C4	NM_012204	exon2	c.A1997G	p.E666G	.	.	71	5	139	1	.	91
GTF3C4	9329	ucsc.edu;bcgsc.ca	37	9	135553517	135553517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTF3C4	NM_012204	exon2	c.C511A	p.P171T	.	.	31	4	34	0	.	91
GTSE1	51512	bcgsc.ca	37	22	46704240	46704240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GTSE1	NM_016426	exon4	c.C162A	p.F54L	.	.	34	4	36	0	.	187
GUCY1A3	2982	bcgsc.ca	37	4	156625104	156625104	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GUCY1A3	NM_001130687	exon4	c.A276G	p.A92A	.	.	135	7	136	0	.	93
GXYLT1	283464	bcgsc.ca	37	12	42499752	42499752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GXYLT1	NM_173601	exon5	c.G732A	p.M244I	.	.	117	5	87	0	.	22
GYG1	2992	bcgsc.ca	37	3	148714221	148714221	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GYG1	NM_004130	exon3	c.T276A	p.L92L	.	.	49	4	47	0	.	91
GYPE	2996	bcgsc.ca	37	4	144797952	144797952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_198682	exon3	c.G193A	p.V65I	.	.	201	6	223	0	.	.
GYS2	2998	bcgsc.ca	37	12	21716201	21716201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GYS2	NM_021957	exon6	c.A902G	p.K301R	.	.	177	6	152	0	.	523
GZF1	64412	bcgsc.ca	37	20	23347694	23347694	+	Silent	SNP	T	T	C	rs139138587		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	GZF1	NM_022482	exon2	c.T1419C	p.T473T	.	.	15	4	28	0	T|1.000;C|0.000	91
HAPLN2	60484	bcgsc.ca	37	1	156594455	156594455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HAPLN2	NM_021817	exon6	c.C619A	p.P207T	.	.	10	3	29	0	.	90
HAPLN2	60484	ucsc.edu;bcgsc.ca	37	1	156593366	156593366	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HAPLN2	NM_021817	exon3	c.A84G	p.P28P	.	.	40	4	35	0	.	90
HBS1L	10767	bcgsc.ca	37	6	135358960	135358960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HBS1L	NM_001145207	exon5	c.A635G	p.K212R	.	.	138	5	274	0	.	92
HDAC2	3066	bcgsc.ca	37	6	114267196	114267196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HDAC2	NM_001527	exon9	c.G958A	p.A320T	.	.	64	4	89	0	.	660
HEATR6	63897	bcgsc.ca	37	17	58151169	58151169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HEATR6	NM_022070	exon3	c.C406T	p.H136Y	.	.	121	6	83	0	.	227
HEPACAM2	253012	bcgsc.ca	37	7	92818585	92818585	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HEPACAM2	NM_198151	exon10	c.1350-2A>G	.	.	.	91	4	86	0	.	157
HERC2	8924	bcgsc.ca	37	15	28361870	28361870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HERC2	NM_004667	exon88	c.G13550A	p.C4517Y	.	.	55	4	63	0	.	234
HGS	9146	bcgsc.ca	37	17	79655816	79655816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HGS	NM_004712	exon5	c.A374T	p.Y125F	.	.	65	4	80	0	.	91
HIP1R	9026	bcgsc.ca	37	12	123345518	123345518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIP1R	NM_003959	exon29	c.C2822T	p.T941I	.	.	74	5	70	0	.	91
HIP1R	9026	ucsc.edu;bcgsc.ca	37	12	123339461	123339461	+	Missense_Mutation	SNP	C	C	T	rs191719039	by1000genomes	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIP1R	NM_003959	exon9	c.C728T	p.A243V	.	.	51	4	44	0	C|0.994;T|0.006	91
HIPK3	10114	bcgsc.ca	37	11	33370778	33370778	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIPK3	NM_005734	exon14	c.C2752T	p.L918L	.	.	81	4	69	1	.	336
HIST1H2BM	8342	bcgsc.ca	37	6	27782862	27782862	+	Missense_Mutation	SNP	G	G	T	rs139858573	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIST1H2BM	NM_003521	exon1	c.G41T	p.G14V	.	.	98	6	72	0	G|1.000;A|0.000	131
HIST1H3C	8352	ucsc.edu	37	6	26045910	26045910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIST1H3C	NM_003531	exon1	c.T272C	p.M91T	.	.	41	4	48	0	.	69
HIVEP1	3096	ucsc.edu;bcgsc.ca	37	6	12124295	12124295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIVEP1	NM_002114	exon4	c.G4267A	p.E1423K	.	.	30	4	38	0	.	139
HIVEP2	3097	bcgsc.ca	37	6	143094516	143094516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HIVEP2	NM_006734	exon5	c.G1360A	p.G454S	.	.	77	4	141	1	.	95
HKDC1	80201	bcgsc.ca	37	10	71000446	71000446	+	Silent	SNP	C	C	A	rs149856737	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HKDC1	NM_025130	exon6	c.C630A	p.T210T	.	.	67	4	38	1	C|1.000;T|0.000	95
HLCS	3141	bcgsc.ca	37	21	38139555	38139555	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HLCS	NM_000411	exon8	c.T1483C	p.L495L	.	.	30	4	41	0	.	157
HMCN1	83872	bcgsc.ca	37	1	186008995	186008995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	HMCN1,NS,carcinoma,+1	HMCN1	NM_031935	exon39	c.T6164C	p.F2055S	.	.	87	4	98	0	.	113
HMOX2	3163	bcgsc.ca	37	16	4555583	4555583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HMOX2	NM_001127205	exon2	c.G58A	p.G20R	.	.	51	4	49	1	.	90
HNRNPL	3191	bcgsc.ca	37	19	39338024	39338024	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HNRNPL	NM_001533	exon2	c.C318A	p.I106I	.	.	52	4	46	0	.	22
HNRNPL	3191	ucsc.edu;bcgsc.ca	37	19	39329657	39329657	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HNRNPL	NM_001533	exon10	c.1234-2A>G	.	.	.	35	4	28	0	.	22
HNRPLL	92906	bcgsc.ca	37	2	38811054	38811054	+	Silent	SNP	A	A	G	rs150028190		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HNRPLL	NM_138394	exon4	c.T561C	p.T187T	.	.	159	5	137	0	A|1.000;G|0.000	91
HOXC5	3222	bcgsc.ca	37	12	54428232	54428232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HOXC5	NM_018953	exon2	c.A625G	p.K209E	.	.	60	4	54	0	.	90
HPS3	84343	bcgsc.ca	37	3	148863153	148863153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HPS3	NM_032383	exon5	c.C983A	p.S328Y	.	.	83	4	80	0	.	158
HPS5	11234	bcgsc.ca	37	11	18320412	18320412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HPS5	NM_181507	exon10	c.T1091C	p.L364P	.	.	53	4	72	0	.	133
HRH4	59340	bcgsc.ca	37	18	22048863	22048863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HRH4	NM_021624	exon2	c.T305A	p.V102E	.	.	102	4	114	0	.	92
HSD17B7P2	158160	bcgsc.ca	37	10	38660038	38660038	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	94	6	113	0	.	.
HSPG2	3339	bcgsc.ca	37	1	22166432	22166432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HSPG2	NM_005529	exon72	c.G9592A	p.V3198M	.	.	71	4	104	0	.	141
HTR4	3360	ucsc.edu;bcgsc.ca	37	5	147889387	147889387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HTR4	NM_001040169	exon5	c.C708A	p.S236S	.	.	43	4	45	0	.	91
HTT	3064	bcgsc.ca	37	4	3162016	3162016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HTT	NM_002111	exon29	c.T3761C	p.L1254P	.	.	78	4	115	0	.	281
HYDIN	54768	bcgsc.ca	37	16	70896989	70896989	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HYDIN	NM_001270974	exon68	c.A11568G	p.Q3856Q	.	.	62	5	34	0	.	92
HYDIN	54768	bcgsc.ca	37	16	70942689	70942689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	HYDIN	NM_001270974	exon48	c.A8080G	p.I2694V	.	.	59	4	58	0	.	92
IARS2	55699	bcgsc.ca	37	1	220311292	220311292	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IARS2	NM_018060	exon17	c.T2082C	p.D694D	.	.	68	4	56	0	.	94
IARS	3376	bcgsc.ca	37	9	94985736	94985736	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IARS	NM_013417	exon32	c.G3445A	p.G1149R	.	.	69	4	77	0	.	92
IDE	3416	bcgsc.ca	37	10	94243042	94243042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IDE	NM_004969	exon14	c.C1709A	p.P570Q	.	.	17	3	24	0	.	92
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90631837	90631837	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IDH2,brain,glioma,-1	IDH2	NM_002168	exon4	c.G516C	p.R172S	.	.	96	40	132	0	.	15118
IDH3B	3420	bcgsc.ca	37	20	2641437	2641437	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IDH3B	NM_006899	exon6	c.A437T	p.K146M	.	.	47	4	37	0	.	226
IFI44	10561	bcgsc.ca	37	1	79116064	79116064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFI44	NM_006417	exon2	c.G184A	p.G62R	.	.	96	4	116	0	.	91
IFLTD1	160492	bcgsc.ca	37	12	25672898	25672898	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFLTD1	NM_001145728	exon7	c.T910C	p.F304L	.	.	121	6	102	0	.	92
IFNAR1	3454	bcgsc.ca	37	21	34727635	34727635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFNAR1	NM_000629	exon11	c.A1454G	p.Q485R	.	.	225	6	144	0	.	91
IFNL3	282617	bcgsc.ca	37	19	39734522	39734522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_172139	exon4	c.C434T	p.P145L	.	.	57	4	64	0	.	.
IFNLR1	163702	bcgsc.ca	37	1	24484061	24484061	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_170743	exon7	c.G1122A	p.L374L	.	.	24	3	40	0	.	.
IFRD2	7866	bcgsc.ca	37	3	50326761	50326761	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFRD2	NM_006764	exon8	c.C1002T	p.S334S	.	.	68	4	89	0	.	212
IFT122	55764	bcgsc.ca	37	3	129188224	129188224	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFT122	NM_052985	exon10	c.A933G	p.G311G	.	.	73	6	96	0	.	92
IFT88	8100	bcgsc.ca	37	13	21157146	21157146	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFT88	NM_175605	exon5	c.C168A	p.G56G	.	.	27	4	37	0	.	91
IFT88	8100	bcgsc.ca	37	13	21173674	21173674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFT88	NM_175605	exon13	c.A809G	p.D270G	.	.	91	5	202	0	.	91
IFT88	8100	bcgsc.ca	37	13	21212586	21212586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IFT88	NM_175605	exon19	c.A1529G	p.E510G	.	.	58	4	118	0	.	91
IGSF1	3547	bcgsc.ca	37	X	130410206	130410206	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IGSF1	NM_001170961	exon15	c.C2640T	p.P880P	.	.	79	4	95	0	.	133
IGSF9B	22997	ucsc.edu;bcgsc.ca	37	11	133801031	133801031	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IGSF9B	NM_014987	exon12	c.1369-2A>G	.	.	.	43	4	69	0	.	68
IKBKAP	8518	ucsc.edu;bcgsc.ca	37	9	111665218	111665218	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKAP	NM_003640	exon16	c.A1755G	p.S585S	.	.	30	4	35	0	.	318
IKBKE	9641	ucsc.edu;bcgsc.ca	37	1	206647814	206647814	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IKBKE	NM_001193322	exon4	c.G228T	p.T76T	.	.	38	4	31	0	.	1061
IL13RA1	3597	bcgsc.ca	37	X	117895101	117895101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IL13RA1	NM_001560	exon6	c.T677C	p.V226A	.	.	172	7	158	0	.	554
IL1RL2	8808	bcgsc.ca	37	2	102818177	102818177	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IL1RL2	NM_003854	exon5	c.649+2T>A	.	.	.	69	4	40	0	.	92
IL2	3558	bcgsc.ca	37	4	123377349	123377349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IL2	NM_000586	exon2	c.A157G	p.N53D	.	.	130	5	127	0	.	659
IL27RA	9466	bcgsc.ca	37	19	14162717	14162717	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IL27RA	NM_004843	exon13	c.C1648T	p.L550L	.	.	57	4	61	0	.	90
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49064263	49064263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	IMPDH2,NS,carcinoma,0	IMPDH2	NM_000884	exon7	c.G676T	p.D226Y	.	.	55	5	52	0	.	227
IMPG2	50939	bcgsc.ca	37	3	100948287	100948287	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IMPG2	NM_016247	exon17	c.G3570T	p.V1190V	.	.	64	4	55	0	.	93
INO80	54617	bcgsc.ca	37	15	41346158	41346158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INO80	NM_017553	exon19	c.A2243G	p.K748R	.	.	87	5	78	0	.	72
INTS2	57508	bcgsc.ca	37	17	59958425	59958425	+	Missense_Mutation	SNP	G	G	A	rs201173583		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTS2	NM_020748	exon17	c.C2221T	p.R741W	.	.	77	4	84	0	.	206
INTS2	57508	bcgsc.ca	37	17	59981845	59981845	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTS2	NM_020748	exon9	c.T1307A	p.L436Q	.	.	74	4	57	0	.	206
INTS3	65123	bcgsc.ca	37	1	153745129	153745129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTS3	NM_023015	exon28	c.C2836A	p.P946T	.	.	119	5	158	0	.	93
INTU	27152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128590302	128590302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	INTU	NM_015693	exon5	c.G1084A	p.V362I	.	.	44	8	50	0	.	91
IP6K3	117283	bcgsc.ca	37	6	33690542	33690542	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IP6K3	NM_001142883	exon7	c.G1188A	p.L396L	.	.	79	5	79	0	.	240
IQCE	23288	bcgsc.ca	37	7	2646862	2646862	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IQCE	NM_001100390	exon20	c.1921+1G>A	.	.	.	58	4	49	0	.	226
ISG20L2	81875	bcgsc.ca	37	1	156693184	156693184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ISG20L2	NM_030980	exon3	c.T1019C	p.V340A	.	.	58	5	78	0	.	91
ITCH	83737	bcgsc.ca	37	20	33067543	33067543	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	ITCH,NS,carcinoma,+2	ITCH	NM_001257137	exon19	c.C1890A	p.I630I	.	.	81	5	105	0	.	659
ITGA11	22801	bcgsc.ca	37	15	68624318	68624318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ITGA11	NM_001004439	exon14	c.G1649T	p.R550L	.	.	122	5	86	0	.	538
ITGA7	3679	ucsc.edu;bcgsc.ca	37	12	56086982	56086982	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	ITGA7,NS,carcinoma,0	ITGA7	NM_001144996	exon20	c.C2667A	p.G889G	.	.	40	4	28	0	.	229
ITGAL	3683	bcgsc.ca	37	16	30516733	30516733	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ITGAL	NM_002209	exon20	c.G2316A	p.G772G	.	.	69	4	60	0	.	994
ITIH6	347365	bcgsc.ca	37	X	54784658	54784658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_198510	exon8	c.A1849G	p.S617G	.	.	73	4	112	0	.	.
ITPR2	3709	bcgsc.ca	37	12	26551829	26551829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ITPR2	NM_002223	exon54	c.A7676G	p.K2559R	.	.	78	4	55	0	.	542
ITPR2	3709	bcgsc.ca	37	12	26816685	26816685	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ITPR2	NM_002223	exon15	c.A1646T	p.Y549F	.	.	72	6	67	0	.	542
ITSN2	50618	bcgsc.ca	37	2	24439086	24439086	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ITSN2	NM_006277	exon32	c.G3822T	p.R1274R	.	.	66	5	44	0	.	539
IVNS1ABP	10625	ucsc.edu;bcgsc.ca	37	1	185274729	185274729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	IVNS1ABP	NM_006469	exon8	c.A704G	p.N235S	.	.	28	4	25	0	.	94
JAK2	3717	bcgsc.ca	37	9	5044500	5044500	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	JAK2	NM_004972	exon5	c.A448G	p.M150V	.	.	76	4	82	0	.	75307
JARID2	3720	bcgsc.ca	37	6	15496557	15496557	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	JARID2	NM_004973	exon7	c.C1101A	p.P367P	.	.	87	4	176	0	.	228
JMJD1C	221037	bcgsc.ca	37	10	64967786	64967786	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	JMJD1C	NM_032776	exon10	c.C3643T	p.H1215Y	.	.	71	4	65	0	.	275
KANK1	23189	bcgsc.ca	37	9	738476	738476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KANK1	NM_001256876	exon12	c.C3525A	p.F1175L	.	.	57	5	38	0	.	517
KAT6A	7994	ucsc.edu;bcgsc.ca	37	8	41812874	41812874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001099412	exon10	c.A1538G	p.E513G	.	.	49	4	52	0	.	.
KAT7	11143	bcgsc.ca	37	17	47900567	47900567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_007067	exon12	c.A1390G	p.K464E	.	.	56	4	62	0	.	.
KCND3	3752	bcgsc.ca	37	1	112318861	112318861	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KCND3	NM_004980	exon8	c.A1806G	p.R602R	.	.	129	6	186	0	.	155
KCNJ1	3758	bcgsc.ca	37	11	128709999	128709999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KCNJ1	NM_000220	exon2	c.T197A	p.V66E	.	.	85	4	82	0	.	156
KCNK2	3776	bcgsc.ca	37	1	215368333	215368333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KCNK2	NM_001017425	exon6	c.T861C	p.P287P	.	.	141	5	114	0	.	90
KCNN3	3782	bcgsc.ca	37	1	154680476	154680476	+	Silent	SNP	C	C	A	rs199920438	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KCNN3	NM_001204087	exon9	c.G2217T	p.P739P	.	.	67	4	77	0	C|1.000;T|0.000	91
KCNQ4	9132	bcgsc.ca	37	1	41282979	41282979	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KCNQ4	NM_004700	exon2	c.C357A	p.S119S	.	.	67	4	76	0	.	90
KDM2A	22992	bcgsc.ca	37	11	67013471	67013471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KDM2A	NM_012308	exon15	c.T1849C	p.S617P	.	.	94	5	95	0	.	661
KDM5B	10765	bcgsc.ca	37	1	202724553	202724553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KDM5B	NM_006618	exon11	c.A1384T	p.N462Y	.	.	35	4	44	0	.	273
KIAA0146	23514	bcgsc.ca	37	8	48320508	48320508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0146	NM_001080394	exon7	c.C862A	p.Q288K	.	.	46	4	46	0	.	68
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48614552	48614552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0146	NM_001080394	exon14	c.C1952G	p.A651G	.	.	126	59	121	0	.	68
KIAA0368	23392	bcgsc.ca	37	9	114128543	114128543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA0368	NM_001080398	exon49	c.T5818C	p.C1940R	.	.	65	4	66	0	.	68
KIAA1009	22832	bcgsc.ca	37	6	84870558	84870558	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1009	NM_014895	exon21	c.C2754A	p.A918A	.	.	68	5	83	0	.	91
KIAA1109	84162	bcgsc.ca	37	4	123145715	123145715	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1109	NM_015312	exon21	c.G2676T	p.L892L	.	.	69	4	53	0	.	80
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123238013	123238013	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1109	NM_015312	exon60	c.C10666T	p.L3556L	.	.	77	16	129	0	.	80
KIAA1199	57214	bcgsc.ca	37	15	81213427	81213427	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1199	NM_018689	exon15	c.C2058A	p.A686A	.	.	77	4	50	0	.	93
KIAA1210	57481	bcgsc.ca	37	X	118242363	118242363	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1210	NM_020721	exon6	c.A849G	p.S283S	.	.	66	4	85	0	.	67
KIAA1210	57481	ucsc.edu;bcgsc.ca	37	X	118230610	118230610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1210	NM_020721	exon8	c.G1113T	p.L371F	.	.	60	5	64	0	.	67
KIAA1239	57495	bcgsc.ca	37	4	37440843	37440843	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001144990	exon6	c.A1127G	p.H376R	.	.	46	4	54	0	.	.
KIAA1324L	222223	bcgsc.ca	37	7	86521130	86521130	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1324L	NM_001142749	exon21	c.T2940C	p.C980C	.	.	159	6	104	0	.	97
KIAA1377	57562	bcgsc.ca	37	11	101793444	101793444	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1377	NM_020802	exon2	c.T201C	p.C67C	.	.	114	5	112	0	.	136
KIAA1549L	25758	bcgsc.ca	37	11	33596255	33596255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_012194	exon9	c.A3347G	p.K1116R	.	.	61	4	88	0	.	.
KIAA1551	55196	bcgsc.ca	37	12	32134384	32134384	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_018169	exon4	c.A495G	p.Q165Q	.	.	94	4	82	0	.	.
KIAA1586	57691	bcgsc.ca	37	6	56919021	56919021	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1586	NM_020931	exon4	c.A1724T	p.E575V	.	.	86	5	107	0	.	44
KIAA1644	85352	ucsc.edu;bcgsc.ca	37	22	44692666	44692666	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1644	NM_001099294	exon3	c.T167A	p.F56Y	.	.	49	4	73	0	.	23
KIAA1715	80856	bcgsc.ca	37	2	176857047	176857047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA1715	NM_030650	exon4	c.A169T	p.T57S	.	.	200	7	208	1	.	93
KIAA2018	205717	bcgsc.ca	37	3	113393711	113393711	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIAA2018	NM_001009899	exon3	c.A15G	p.T5T	.	.	86	4	102	0	.	93
KIDINS220	57498	bcgsc.ca	37	2	8891668	8891668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIDINS220	NM_020738	exon23	c.G3118T	p.V1040L	.	.	68	4	49	0	.	93
KIF13B	23303	bcgsc.ca	37	8	28967000	28967000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF13B	NM_015254	exon34	c.G4112T	p.G1371V	.	.	129	6	150	1	.	22
KIF14	9928	ucsc.edu;bcgsc.ca	37	1	200544760	200544760	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF14	NM_014875	exon22	c.C3525A	p.P1175P	.	.	33	4	26	0	.	140
KIF15	56992	ucsc.edu	37	3	44884664	44884664	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF15	NM_020242	exon30	c.A3633G	p.L1211L	.	.	41	4	54	1	.	91
KIF15	56992	ucsc.edu;bcgsc.ca	37	3	44884683	44884683	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF15	NM_020242	exon30	c.C3652A	p.L1218M	.	.	39	4	52	0	.	91
KIF16B	55614	ucsc.edu;bcgsc.ca	37	20	16360076	16360076	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF16B	NM_001199865	exon19	c.A2571G	p.E857E	.	.	49	5	31	0	.	291
KIF18A	81930	bcgsc.ca	37	11	28058199	28058199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF18A	NM_031217	exon14	c.G1961T	p.G654V	.	.	82	5	51	0	.	92
KIF1B	23095	bcgsc.ca	37	1	10364510	10364510	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF1B	NM_183416	exon21	c.A3267G	p.A1089A	.	.	60	4	51	0	.	93
KIF20B	9585	bcgsc.ca	37	10	91479360	91479360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF20B	NM_016195	exon13	c.A1619G	p.E540G	.	.	116	5	129	0	.	93
KIF2C	11004	bcgsc.ca	37	1	45218873	45218873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIF2C	NM_006845	exon6	c.A509G	p.E170G	.	.	64	4	61	0	.	228
KIN	22944	bcgsc.ca	37	10	7805747	7805747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KIN	NM_012311	exon10	c.T857A	p.I286N	.	.	73	4	64	0	.	230
KLC4	89953	bcgsc.ca	37	6	43040600	43040600	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KLC4	NM_201523	exon13	c.G1581T	p.L527L	.	.	57	4	119	0	.	94
KLHL13	90293	bcgsc.ca	37	X	117106740	117106740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KLHL13	NM_033495	exon1	c.C52A	p.P18T	.	.	81	4	47	0	.	556
KLHL2	11275	bcgsc.ca	37	4	166238984	166238984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KLHL2	NM_001161521	exon14	c.G1628T	p.C543F	.	.	119	6	137	0	.	226
KLHL21	9903	ucsc.edu	37	1	6661994	6661994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KLHL21	NM_014851	exon1	c.A884G	p.D295G	.	.	51	4	80	0	.	514
KLHL5	51088	bcgsc.ca	37	4	39122646	39122646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KLHL5	NM_015990	exon11	c.T2228C	p.L743P	.	.	94	4	156	0	.	91
KMO	8564	bcgsc.ca	37	1	241714313	241714313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KMO	NM_003679	exon4	c.A281G	p.K94R	.	.	83	4	79	0	.	92
KNG1	3827	bcgsc.ca	37	3	186445053	186445053	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNG1	NM_000893	exon5	c.A592T	p.T198S	.	.	78	4	57	0	.	92
KNTC1	9735	bcgsc.ca	37	12	123031976	123031976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon11	c.A831T	p.L277F	.	.	66	4	68	1	.	543
KNTC1	9735	bcgsc.ca	37	12	123060177	123060177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon28	c.G2470A	p.E824K	.	.	72	4	50	0	.	543
KNTC1	9735	bcgsc.ca	37	12	123075228	123075228	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon41	c.T4074C	p.F1358F	.	.	145	6	122	0	.	543
KNTC1	9735	broad.mit.edu;bcgsc.ca	37	12	123060387	123060387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KNTC1	NM_014708	exon29	c.A2527G	p.K843E	.	.	155	7	201	0	.	543
KPNA1	3836	bcgsc.ca	37	3	122145923	122145923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KPNA1	NM_002264	exon14	c.A1526G	p.E509G	.	.	131	5	103	0	.	226
KRT71	112802	bcgsc.ca	37	12	52941689	52941689	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KRT71	NM_033448	exon6	c.T1056C	p.T352T	.	.	121	6	102	0	.	92
KRT85	3891	ucsc.edu;bcgsc.ca	37	12	52758150	52758150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	KRT85	NM_002283	exon3	c.G630T	p.K210N	.	.	42	6	32	0	.	91
LAMA1	284217	bcgsc.ca	37	18	6965404	6965404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMA1	NM_005559	exon50	c.C7078T	p.R2360C	.	.	50	4	43	0	.	149
LAMB4	22798	ucsc.edu;bcgsc.ca	37	7	107696361	107696361	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMB4	NM_007356	exon25	c.A3471G	p.R1157R	.	.	53	6	65	0	.	140
LAMC3	10319	ucsc.edu;bcgsc.ca	37	9	133963173	133963173	+	Silent	SNP	C	C	A	rs200452667	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMC3	NM_006059	exon27	c.C4446A	p.I1482I	.	.	26	4	27	0	C|0.999;T|0.001	93
LAMP1	3916	bcgsc.ca	37	13	113964024	113964024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LAMP1	NM_005561	exon3	c.A250G	p.N84D	.	.	60	4	90	0	.	514
LARP7	51574	bcgsc.ca	37	4	113567974	113567974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LARP7	NM_001267039	exon7	c.A436G	p.S146G	.	.	96	5	73	0	.	93
LATS1	9113	bcgsc.ca	37	6	149997447	149997447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LATS1	NM_004690	exon7	c.G2832T	p.L944F	.	.	107	5	180	0	.	992
LATS1	9113	bcgsc.ca	37	6	150001090	150001090	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LATS1	NM_004690	exon5	c.T2514C	p.R838R	.	.	61	4	95	0	.	992
LCK	3932	bcgsc.ca	37	1	32740379	32740379	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LCK	NM_005356	exon3	c.T147C	p.V49V	.	.	54	4	76	0	.	1378
LCP1	3936	bcgsc.ca	37	13	46708334	46708334	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LCP1	NM_002298	exon14	c.T1554C	p.D518D	.	.	74	4	108	0	.	685
LDB3	11155	ucsc.edu;bcgsc.ca	37	10	88478562	88478562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LDB3	NM_001171610	exon12	c.A1951G	p.S651G	.	.	30	4	44	0	.	92
LEO1	123169	bcgsc.ca	37	15	52242039	52242039	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LEO1	NM_138792	exon10	c.T1764C	p.A588A	.	.	75	4	66	0	.	68
LGR6	59352	bcgsc.ca	37	1	202287149	202287149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LGR6	NM_001017403	exon18	c.T1718C	p.L573S	.	.	64	5	68	0	.	160
LGR6	59352	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202287962	202287962	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LGR6	NM_001017403	exon18	c.G2531A	p.R844H	.	.	39	13	47	0	.	160
LHCGR	3973	bcgsc.ca	37	2	48921419	48921419	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LHCGR	NM_000233	exon10	c.T891C	p.S297S	.	.	125	7	81	0	.	589
LIMA1	51474	bcgsc.ca	37	12	50586339	50586339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIMA1	NM_001113546	exon9	c.T1039C	p.S347P	.	.	99	8	103	0	.	91
LIN7A	8825	bcgsc.ca	37	12	81331451	81331451	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIN7A	NM_004664	exon1	c.G51A	p.L17L	.	.	95	5	61	0	.	516
LINS	55180	bcgsc.ca	37	15	101115197	101115197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LINS	NM_001040616	exon4	c.A626G	p.K209R	.	.	91	4	56	0	.	92
LIPA	3988	ucsc.edu;bcgsc.ca	37	10	90988121	90988121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIPA	NM_000235	exon4	c.G264T	p.L88F	.	.	40	4	42	0	.	90
LIPF	8513	bcgsc.ca	37	10	90431683	90431683	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIPF	NM_001198829	exon7	c.T660A	p.L220L	.	.	71	4	89	0	.	90
LIPF	8513	bcgsc.ca	37	10	90433435	90433435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LIPF	NM_001198829	exon8	c.C790T	p.L264F	.	.	63	4	85	0	.	90
LMAN2L	81562	bcgsc.ca	37	2	97373014	97373014	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LMAN2L	NM_001142292	exon9	c.G1059A	p.Q353Q	.	.	85	4	67	0	.	90
LMNB2	84823	bcgsc.ca	37	19	2433855	2433855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LMNB2	NM_032737	exon8	c.A1451G	p.K484R	.	.	33	4	60	0	.	290
LMOD1	25802	bcgsc.ca	37	1	201868567	201868567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LMOD1	NM_012134	exon2	c.C1574A	p.P525H	.	.	71	5	88	0	.	93
LOC728323	0	bcgsc.ca	37	2	243037168	243037168	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	95	5	111	0	.	.
LOC81691	0	bcgsc.ca	37	16	20824611	20824611	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LOC81691	NM_030941	exon3	c.G238A	p.V80I	.	.	66	4	45	0	.	92
LONRF3	79836	bcgsc.ca	37	X	118109300	118109300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LONRF3	NM_001031855	exon1	c.G557T	p.R186L	.	.	59	4	181	1	.	289
LOXL4	84171	ucsc.edu	37	10	100012182	100012182	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LOXL4	NM_032211	exon12	c.A1879G	p.T627A	.	.	35	4	42	0	.	230
LPA	4018	bcgsc.ca	37	6	161010682	161010682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPA	NM_005577	exon25	c.G3850A	p.G1284S	.	.	55	4	88	0	.	74
LPHN2	23266	ucsc.edu;bcgsc.ca	37	1	82417786	82417786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPHN2	NM_012302	exon8	c.A1742G	p.K581R	.	.	63	5	53	0	.	525
LPHN3	23284	ucsc.edu	37	4	62936579	62936579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPHN3	NM_015236	exon23	c.C4363T	p.P1455S	.	.	35	4	23	0	.	508
LPIN2	9663	ucsc.edu;bcgsc.ca	37	18	2920361	2920361	+	Missense_Mutation	SNP	C	C	A	rs201160155		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LPIN2	NM_014646	exon20	c.G2621T	p.C874F	.	.	39	4	44	0	C|0.999;A|0.001	227
LRAT	9227	ucsc.edu;bcgsc.ca	37	4	155665881	155665881	+	Missense_Mutation	SNP	G	G	A	rs139819099	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRAT	NM_004744	exon2	c.G403A	p.A135T	.	.	42	4	33	0	G|0.999;T|0.001	90
LRBA	987	ucsc.edu;bcgsc.ca	37	4	151408925	151408925	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRBA	NM_006726	exon43	c.T6543C	p.P2181P	.	.	51	4	54	0	.	157
LRCH2	57631	bcgsc.ca	37	X	114400210	114400210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRCH2	NM_001243963	exon9	c.G1207A	p.V403I	.	.	155	5	116	0	.	131
LRP1	4035	bcgsc.ca	37	12	57603504	57603504	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP1	NM_002332	exon80	c.T12292C	p.F4098L	.	.	62	5	65	0	.	596
LRP1B	53353	bcgsc.ca	37	2	141208142	141208142	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP1B	NM_018557	exon63	c.A10052G	p.D3351G	.	.	49	5	46	0	.	311
LRP1B	53353	bcgsc.ca	37	2	141232832	141232832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP1B	NM_018557	exon60	c.T9500C	p.V3167A	.	.	136	6	129	0	.	311
LRP1B	53353	bcgsc.ca	37	2	141643793	141643793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP1B	NM_018557	exon24	c.T3878C	p.L1293P	.	.	165	5	135	0	.	311
LRP1B	53353	bcgsc.ca	37	2	141771173	141771173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP1B	NM_018557	exon14	c.A2332G	p.R778G	.	.	160	6	103	0	.	311
LRP6	4040	bcgsc.ca	37	12	12336939	12336939	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRP6	NM_002336	exon5	c.G951T	p.L317L	.	.	126	6	89	0	.	661
LRRC32	2615	ucsc.edu;bcgsc.ca	37	11	76371606	76371606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC32	NM_005512	exon3	c.T1031C	p.L344P	.	.	31	4	37	0	.	90
LRRC38	126755	ucsc.edu;bcgsc.ca	37	1	13839496	13839496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001010847	exon1	c.T593C	p.F198S	.	.	42	4	95	0	.	.
LRRC73	221424	ucsc.edu;bcgsc.ca	37	6	43476630	43476630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001012974	exon2	c.G301T	p.G101W	.	.	52	4	79	0	.	.
LRRC7	57554	bcgsc.ca	37	1	70573433	70573433	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC7	NM_020794	exon24	c.4432-2A>G	.	.	.	62	4	81	0	.	163
LRRC8A	56262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131678510	131678510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC8A	NM_001127244	exon4	c.C2293T	p.R765W	.	.	20	7	30	0	.	90
LRRC8D	55144	bcgsc.ca	37	1	90399721	90399721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRC8D	NM_018103	exon3	c.T1094C	p.L365P	.	.	196	6	260	0	.	92
LRRD1	401387	bcgsc.ca	37	7	91792958	91792958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001161528	exon1	c.A1559G	p.N520S	.	.	106	4	83	0	.	.
LRRN3	54674	bcgsc.ca	37	7	110763555	110763555	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LRRN3	NM_018334	exon2	c.T727C	p.F243L	.	.	86	4	67	0	.	154
LSS	4047	bcgsc.ca	37	21	47641842	47641842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LSS	NM_001001438	exon5	c.T476C	p.V159A	.	.	23	3	40	0	.	90
LTA4H	4048	bcgsc.ca	37	12	96408680	96408680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LTA4H	NM_000895	exon12	c.A1157G	p.K386R	.	.	75	4	61	0	.	91
LTN1	26046	bcgsc.ca	37	21	30341826	30341826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LTN1	NM_015565	exon9	c.G1411T	p.G471C	.	.	71	5	46	0	.	530
LUZP1	7798	bcgsc.ca	37	1	23418503	23418503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LUZP1	NM_033631	exon4	c.G2252A	p.R751Q	.	.	55	4	64	0	.	90
LYPD3	27076	bcgsc.ca	37	19	43965959	43965959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LYPD3	NM_014400	exon5	c.G585T	p.Q195H	.	.	46	4	49	0	.	91
LYPLA2	11313	bcgsc.ca	37	1	24121170	24121170	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	LYPLA2	NM_007260	exon10	c.646-2A>G	.	.	.	60	4	59	0	.	92
MAATS1	89876	ucsc.edu;bcgsc.ca	37	3	119434475	119434475	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_033364	exon6	c.G567A	p.V189V	.	.	44	4	33	0	.	.
MAATS1	89876	bcgsc.ca	37	3	119421997	119421997	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_033364	exon1	c.C52A	p.Q18K	.	.	44	4	96	0	.	.
MAGEB5	347541	bcgsc.ca	37	X	26235453	26235453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAGEB5	NM_001271752	exon2	c.A35G	p.D12G	.	.	66	4	57	0	.	109
MAGEF1	64110	ucsc.edu;bcgsc.ca	37	3	184429305	184429305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAGEF1	NM_022149	exon1	c.T305C	p.M102T	.	.	35	4	42	0	.	91
MALT1	10892	bcgsc.ca	37	18	56409244	56409244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MALT1	NM_006785	exon14	c.A1751G	p.H584R	.	.	74	4	44	0	.	660
MAP2	4133	bcgsc.ca	37	2	210559758	210559758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP2	NM_002374	exon7	c.A2864G	p.K955R	.	.	140	5	103	0	.	591
MAP3K1	4214	bcgsc.ca	37	5	56160658	56160658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP3K1	NM_005921	exon4	c.T932C	p.V311A	.	.	102	6	84	0	.	956
MAP3K19	80122	bcgsc.ca	37	2	135763090	135763090	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_025052	exon3	c.A150G	p.Q50Q	.	.	53	4	41	0	.	.
MAP3K19	80122	bcgsc.ca	37	2	135779337	135779337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_025052	exon2	c.T86C	p.M29T	.	.	139	5	143	0	.	.
MAP3K6	9064	ucsc.edu	37	1	27690041	27690041	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP3K6	NM_004672	exon7	c.865-2A>G	.	.	.	23	5	12	0	.	1523
MAP3K7	6885	bcgsc.ca	37	6	91229009	91229009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP3K7	NM_145331	exon15	c.A1492G	p.M498V	.	.	63	4	76	0	.	980
MAP4	4134	bcgsc.ca	37	3	48040149	48040149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP4	NM_001134364	exon2	c.T202C	p.S68P	.	.	85	4	136	0	.	93
MAP7D1	55700	bcgsc.ca	37	1	36637115	36637115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAP7D1	NM_018067	exon3	c.G393T	p.E131D	.	.	93	4	126	0	.	138
MAPK13	5603	ucsc.edu;bcgsc.ca	37	6	36100412	36100412	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPK13	NM_002754	exon3	c.G264A	p.L88L	.	.	42	4	58	0	.	1521
MAPK15	225689	bcgsc.ca	37	8	144803206	144803206	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPK15	NM_139021	exon10	c.A954G	p.A318A	.	.	81	5	78	0	.	1378
MAPK7	5598	bcgsc.ca	37	17	19283942	19283942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPK7	NM_002749	exon4	c.G420A	p.M140I	.	.	50	4	61	0	.	1402
MAPKAPK5	8550	bcgsc.ca	37	12	112323800	112323800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPKAPK5	NM_139078	exon10	c.T929C	p.L310P	.	.	98	5	116	0	.	1215
MAPRE1	22919	bcgsc.ca	37	20	31413784	31413784	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MAPRE1	NM_012325	exon2	c.A51G	p.R17R	.	.	76	5	47	0	.	90
MATN2	4147	ucsc.edu;bcgsc.ca	37	8	98973649	98973649	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MATN2	NM_002380	exon5	c.T849C	p.C283C	.	.	48	4	34	0	.	24
MATR3	9782	bcgsc.ca	37	5	138643957	138643957	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MATR3	NM_018834	exon2	c.T853C	p.L285L	.	.	147	5	121	0	.	91
MATR3	9782	bcgsc.ca	37	5	138654614	138654614	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MATR3	NM_018834	exon8	c.A1326G	p.A442A	.	.	114	5	113	0	.	91
MBP	4155	bcgsc.ca	37	18	74721844	74721844	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MBP	NM_001025081	exon2	c.T216C	p.S72S	.	.	50	4	49	0	.	515
MCC	4163	ucsc.edu	37	5	112437632	112437632	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCC	NM_001085377	exon8	c.A1202G	p.E401G	.	.	33	4	12	0	.	69
MCF2	4168	bcgsc.ca	37	X	138698561	138698561	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCF2	NM_001171876	exon12	c.A1251G	p.E417E	.	.	224	6	187	0	.	227
MCHR2	84539	bcgsc.ca	37	6	100395774	100395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCHR2	NM_001040179	exon3	c.A256G	p.M86V	.	.	57	4	76	0	.	525
MCM3AP	8888	ucsc.edu;bcgsc.ca	37	21	47686021	47686021	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCM3AP	NM_003906	exon11	c.A2849G	p.K950R	.	.	40	4	34	0	.	291
MCOLN3	55283	bcgsc.ca	37	1	85487761	85487761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCOLN3	NM_018298	exon11	c.C1312A	p.H438N	.	.	95	4	89	0	.	91
MCOLN3	55283	bcgsc.ca	37	1	85510938	85510938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MCOLN3	NM_001253693	exon2	c.G106T	p.D36Y	.	.	47	4	38	0	.	91
MDK	4192	bcgsc.ca	37	11	46403627	46403627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MDK	NM_001012333	exon2	c.T20C	p.L7P	.	.	55	5	70	0	.	90
MDM4	4194	bcgsc.ca	37	1	204513682	204513682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MDM4	NM_002393	exon9	c.T692C	p.V231A	.	.	172	6	230	0	.	1271
MDN1	23195	ucsc.edu;bcgsc.ca	37	6	90353833	90353833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MDN1	NM_014611	exon102	c.T16682C	p.F5561S	.	.	54	5	104	0	.	100
MED12L	116931	ucsc.edu	37	3	151148143	151148143	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED12L	NM_053002	exon42	c.G6360A	p.V2120V	.	.	45	4	47	0	.	576
MED14	9282	bcgsc.ca	37	X	40534473	40534473	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED14	NM_004229	exon22	c.G3021A	p.Q1007Q	.	.	61	4	60	0	.	289
MED1	5469	bcgsc.ca	37	17	37565814	37565814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED1	NM_004774	exon17	c.G2660A	p.S887N	.	.	73	4	78	0	.	620
MED17	9440	bcgsc.ca	37	11	93527020	93527020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED17	NM_004268	exon4	c.C764A	p.A255E	.	.	69	4	94	0	.	187
MED24	9862	bcgsc.ca	37	17	38192405	38192405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED24	NM_014815	exon4	c.G216T	p.M72I	.	.	50	4	43	0	.	187
MED26	9441	bcgsc.ca	37	19	16686939	16686939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED26	NM_004831	exon3	c.G1702T	p.D568Y	.	.	15	3	43	0	.	70
MED27	9442	ucsc.edu;bcgsc.ca	37	9	134955144	134955144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MED27	NM_001253881	exon1	c.A88G	p.R30G	.	.	48	4	58	0	.	69
MEGF8	1954	ucsc.edu;bcgsc.ca	37	19	42839306	42839306	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MEGF8	NM_001271938	exon4	c.T678C	p.S226S	.	.	45	4	44	0	.	23
MERTK	10461	bcgsc.ca	37	2	112760697	112760697	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MERTK	NM_006343	exon12	c.A1719G	p.L573L	.	.	139	5	76	0	.	1463
MERTK	10461	bcgsc.ca	37	2	112779124	112779124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MERTK	NM_006343	exon17	c.T2315C	p.L772P	.	.	35	4	29	0	.	1463
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163694	58163694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	METTL1	NM_005371	exon3	c.A320G	p.E107G	.	.	43	4	40	0	.	492
MGAM	8972	bcgsc.ca	37	7	141756652	141756652	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MGAM	NM_004668	exon30	c.T3603C	p.P1201P	.	.	38	4	25	0	.	70
MGEA5	10724	bcgsc.ca	37	10	103567526	103567526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MGEA5	NM_001142434	exon5	c.T613A	p.Y205N	.	.	94	6	142	0	.	93
MGST1	4257	bcgsc.ca	37	12	16507272	16507272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MGST1	NM_001260512	exon2	c.T86C	p.L29P	.	.	202	6	243	1	.	90
MICAL3	57553	bcgsc.ca	37	22	18370178	18370178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MICAL3	NM_015241	exon14	c.G1915A	p.E639K	.	.	80	4	112	0	.	68
MID1	4281	bcgsc.ca	37	X	10422934	10422934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MID1	NM_001193277	exon9	c.A1631G	p.E544G	.	.	96	4	73	0	.	229
MIER1	57708	bcgsc.ca	37	1	67428806	67428806	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MIER1	NM_001077700	exon8	c.T735C	p.I245I	.	.	69	4	78	0	.	91
MIPEP	4285	bcgsc.ca	37	13	24411808	24411808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MIPEP	NM_005932	exon13	c.C1426A	p.R476S	.	.	36	4	56	0	.	90
MIR124-1	406907	ucsc.edu	37	8	9760942	9760942	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	40	4	36	0	.	.
MIR200A	406983	broad.mit.edu;mdanderson.org	37	1	1103284	1103284	+	RNA	SNP	C	C	G	rs202051309	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	48	16	65	0	C|0.996;T|0.004	.
MIR548N	100302152	ucsc.edu	37	2	179308115	179308115	+	RNA	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	56	5	49	0	.	.
MITF	4286	bcgsc.ca	37	3	69915446	69915446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MITF	NM_198177	exon1	c.A5G	p.E2G	.	.	64	4	74	0	.	524
MLF2	8079	ucsc.edu;bcgsc.ca	37	12	6861205	6861205	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLF2	NM_005439	exon3	c.T66C	p.I22I	.	.	43	4	35	0	.	153
MLL	4297	ucsc.edu;bcgsc.ca	37	11	118343416	118343416	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLL	NM_001197104	exon3	c.C1542T	p.P514P	.	.	40	4	34	0	.	1255
MLL3	58508	bcgsc.ca	37	7	151880180	151880180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLL3	NM_170606	exon35	c.C5144A	p.S1715Y	.	.	195	6	191	0	.	1398
MLLT3	4300	bcgsc.ca	37	9	20354849	20354849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLLT3	NM_004529	exon9	c.A1460G	p.Q487R	.	.	89	4	129	0	.	660
MLPH	79083	bcgsc.ca	37	2	238434321	238434321	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLPH	NM_001042467	exon7	c.C753A	p.A251A	.	.	49	4	42	0	.	91
MLX	6945	bcgsc.ca	37	17	40723598	40723598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MLX	NM_170607	exon8	c.C874A	p.Q292K	.	.	62	4	65	0	.	90
MMP15	4324	ucsc.edu;bcgsc.ca	37	16	58075733	58075733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MMP15	NM_002428	exon6	c.G1123T	p.D375Y	.	.	38	4	57	0	.	713
MMP16	4325	bcgsc.ca	37	8	89086884	89086884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MMP16	NM_005941	exon7	c.A1171G	p.S391G	.	.	57	4	32	0	.	231
MMS19	64210	ucsc.edu;bcgsc.ca	37	10	99238131	99238131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_022362	exon4	c.T278C	p.L93P	.	.	26	5	30	0	.	.
MMS22L	253714	bcgsc.ca	37	6	97609936	97609936	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MMS22L	NM_198468	exon22	c.A3327G	p.E1109E	.	.	84	5	65	0	.	92
MNS1	55329	bcgsc.ca	37	15	56756229	56756229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MNS1	NM_018365	exon2	c.C220A	p.Q74K	.	.	94	5	71	0	.	91
MOB1B	92597	bcgsc.ca	37	4	71847759	71847759	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001244766	exon7	c.C651A	p.T217T	.	.	73	4	52	0	.	.
MOCOS	55034	bcgsc.ca	37	18	33848625	33848625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MOCOS	NM_017947	exon15	c.A2644G	p.K882E	.	.	68	4	68	0	.	91
MORC3	23515	bcgsc.ca	37	21	37744789	37744789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MORC3	NM_015358	exon16	c.A2626G	p.S876G	.	.	89	4	81	0	.	92
MPC2	25874	bcgsc.ca	37	1	167889784	167889784	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001143674	exon5	c.235+1G>A	.	.	.	84	6	94	0	.	.
MPDZ	8777	bcgsc.ca	37	9	13192135	13192135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MPDZ	NM_003829	exon15	c.G1963A	p.E655K	.	.	48	4	39	0	.	231
MRAS	22808	ucsc.edu;bcgsc.ca	37	3	138117409	138117409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRAS	NM_012219	exon4	c.A446G	p.N149S	.	.	29	4	46	0	.	848
MRC2	9902	ucsc.edu;bcgsc.ca	37	17	60759723	60759723	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRC2	NM_006039	exon20	c.C2931A	p.I977I	.	.	45	4	82	0	.	117
MREG	55686	bcgsc.ca	37	2	216810418	216810418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MREG	NM_018000	exon4	c.A386G	p.K129R	.	.	97	5	104	0	.	90
MROH1	727957	bcgsc.ca	37	8	145278057	145278057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_032450	exon14	c.G1262T	p.G421V	.	.	88	5	59	0	.	.
MRPS11	64963	ucsc.edu	37	15	89021145	89021145	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRPS11	NM_022839	exon6	c.T520C	p.S174P	.	.	37	4	23	0	.	90
MRPS33	51650	bcgsc.ca	37	7	140710383	140710383	+	Silent	SNP	C	C	T	rs147370144	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRPS33	NM_016071	exon2	c.G51A	p.R17R	.	.	73	4	74	0	C|1.000;T|0.000	90
MRPS36	92259	bcgsc.ca	37	5	68522196	68522196	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRPS36	NM_033281	exon2	c.T74C	p.F25S	.	.	162	6	165	0	.	22
MRPS9	64965	bcgsc.ca	37	2	105705503	105705503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MRPS9	NM_182640	exon6	c.T551C	p.L184P	.	.	65	4	45	0	.	90
MSH4	4438	bcgsc.ca	37	1	76288252	76288252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MSH4	NM_002440	exon7	c.T1148C	p.F383S	.	.	103	5	76	0	.	660
MTHFD1	4522	bcgsc.ca	37	14	64908132	64908132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFD1	NM_005956	exon19	c.G1845A	p.M615I	.	.	83	6	87	0	.	92
MTHFD1L	25902	bcgsc.ca	37	6	151286132	151286132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFD1L	NM_001242767	exon19	c.A1975T	p.M659L	.	.	67	4	130	0	.	292
MTHFD1L	25902	ucsc.edu;bcgsc.ca	37	6	151258025	151258025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFD1L	NM_001242767	exon12	c.T1345C	p.S449P	.	.	20	5	25	0	.	292
MTHFR	4524	bcgsc.ca	37	1	11855279	11855279	+	Missense_Mutation	SNP	C	C	T	rs143466425		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTHFR	NM_005957	exon6	c.G907A	p.V303M	.	.	44	4	47	0	C|1.000;T|0.000	90
MTL5	9633	bcgsc.ca	37	11	68475786	68475786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTL5	NM_004923	exon10	c.A1517G	p.K506R	.	.	95	5	101	0	.	155
MTMR10	54893	bcgsc.ca	37	15	31240546	31240546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTMR10	NM_017762	exon13	c.T1336C	p.F446L	.	.	147	5	100	0	.	91
MTPAP	55149	bcgsc.ca	37	10	30605119	30605119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTPAP	NM_018109	exon7	c.A1240G	p.I414V	.	.	95	6	100	0	.	91
MTR	4548	bcgsc.ca	37	1	236976069	236976069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTR	NM_000254	exon6	c.G534T	p.E178D	.	.	107	7	85	0	.	92
MTTP	4547	bcgsc.ca	37	4	100512832	100512832	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTTP	NM_000253	exon7	c.A643T	p.T215S	.	.	84	4	66	0	.	93
MTTP	4547	bcgsc.ca	37	4	100521745	100521745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MTTP	NM_000253	exon10	c.C1091T	p.T364I	.	.	73	4	47	0	.	93
MUC16	94025	bcgsc.ca	37	19	9058956	9058956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC16	NM_024690	exon3	c.A28490G	p.D9497G	.	.	57	4	64	0	.	566
MUC2	4583	bcgsc.ca	37	11	1093069	1093069	+	Missense_Mutation	SNP	A	A	G	rs201496058		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC2	NM_002457	exon30	c.A4888G	p.T1630A	.	.	95	9	136	2	.	90
MUC2	4583	ucsc.edu;bcgsc.ca	37	11	1087497	1087497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC2	NM_002457	exon24	c.A3248G	p.D1083G	.	.	38	4	57	1	.	90
MUC4	4585	bcgsc.ca	37	3	195505674	195505674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC4	NM_018406	exon2	c.G12777T	p.K4259N	.	.	55	4	48	0	.	90
MUC4	4585	mdanderson.org	37	3	195515031	195515031	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUC4	NM_018406	exon2	c.C3420T	p.T1140T	.	.	40	7	44	2	.	90
MURC	347273	bcgsc.ca	37	9	103340790	103340790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MURC	NM_001018116	exon1	c.A365G	p.E122G	.	.	111	5	154	0	.	69
MUSK	4593	bcgsc.ca	37	9	113538076	113538076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MUSK	NM_005592	exon9	c.G1193A	p.C398Y	.	.	76	4	103	0	.	1379
MX1	4599	bcgsc.ca	37	21	42823148	42823148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MX1	NM_001144925	exon17	c.T1487C	p.F496S	.	.	79	4	71	0	.	515
MYBL2	4605	ucsc.edu;bcgsc.ca	37	20	42331148	42331148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYBL2	NM_002466	exon8	c.G970A	p.D324N	.	.	48	5	48	0	.	415
MYBPC1	4604	ucsc.edu	37	12	102071149	102071149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYBPC1	NM_206819	exon27	c.A3086G	p.E1029G	.	.	42	4	20	0	.	94
MYCBP2	23077	bcgsc.ca	37	13	77786130	77786130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYCBP2	NM_015057	exon22	c.C3223T	p.L1075F	.	.	61	4	101	0	.	236
MYH10	4628	bcgsc.ca	37	17	8408121	8408121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH10	NM_001256012	exon28	c.T3490C	p.S1164P	.	.	83	5	89	0	.	92
MYH13	8735	bcgsc.ca	37	17	10243530	10243530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH13	NM_003802	exon18	c.A1993T	p.N665Y	.	.	68	4	63	0	.	6
MYH3	4621	bcgsc.ca	37	17	10533664	10533664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH3	NM_002470	exon37	c.G5398A	p.E1800K	.	.	76	4	94	0	.	95
MYH3	4621	bcgsc.ca	37	17	10542628	10542628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH3	NM_002470	exon24	c.A3089G	p.Q1030R	.	.	91	4	151	0	.	95
MYH8	4626	bcgsc.ca	37	17	10307719	10307719	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH8	NM_002472	exon22	c.A2616G	p.K872K	.	.	339	8	370	0	.	101
MYH8	4626	bcgsc.ca	37	17	10312814	10312814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYH8	NM_002472	exon16	c.T1679C	p.L560P	.	.	76	4	106	0	.	101
MYO10	4651	bcgsc.ca	37	5	16761603	16761603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO10	NM_012334	exon17	c.A1709G	p.D570G	.	.	63	4	50	0	.	3
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27421740	27421740	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO18A	NM_078471	exon30	c.C4638T	p.D1546D	.	.	108	33	145	0	.	22
MYO18B	84700	bcgsc.ca	37	22	26194025	26194025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO18B	NM_032608	exon12	c.G2482T	p.A828S	.	.	29	4	33	0	.	142
MYO1C	4641	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1387559	1387559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO1C	NM_001080779	exon2	c.T114G	p.S38R	.	.	9	5	20	1	.	90
MYO5C	55930	bcgsc.ca	37	15	52510832	52510832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO5C	NM_018728	exon32	c.G3838T	p.D1280Y	.	.	165	7	176	1	.	145
MYO7A	4647	bcgsc.ca	37	11	76905504	76905504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYO7A	NM_000260	exon32	c.C4258A	p.R1420S	.	.	31	4	36	0	.	138
MYOF	26509	bcgsc.ca	37	10	95211839	95211839	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	MYOF	NM_133337	exon3	c.T204C	p.I68I	.	.	86	5	176	0	.	93
N4BP1	9683	bcgsc.ca	37	16	48595174	48595174	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	N4BP1	NM_153029	exon2	c.T1380A	p.I460I	.	.	115	5	127	0	.	22
NAA15	80155	bcgsc.ca	37	4	140297535	140297535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAA15	NM_057175	exon16	c.A1964G	p.E655G	.	.	47	4	30	0	.	92
NAAA	27163	bcgsc.ca	37	4	76857269	76857269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAAA	NM_014435	exon3	c.A491G	p.N164S	.	.	65	4	47	0	.	91
NABP1	64859	bcgsc.ca	37	2	192550349	192550349	+	Missense_Mutation	SNP	A	A	G	rs139076288	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001031716	exon6	c.A470G	p.E157G	.	.	139	5	90	0	A|1.000;G|0.000	.
NAF1	92345	bcgsc.ca	37	4	164069576	164069576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAF1	NM_138386	exon3	c.C551A	p.S184Y	.	.	90	4	87	0	.	70
NAGA	4668	ucsc.edu;bcgsc.ca	37	22	42463846	42463846	+	Missense_Mutation	SNP	C	C	T	rs202010344		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NAGA	NM_000262	exon3	c.G247A	p.G83S	.	.	39	4	45	0	C|0.999;T|0.000	90
NALCN	259232	bcgsc.ca	37	13	101760100	101760100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NALCN	NM_052867	exon21	c.A2405G	p.D802G	.	.	173	6	267	0	.	167
NALCN	259232	ucsc.edu;bcgsc.ca	37	13	101881828	101881828	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NALCN	NM_052867	exon13	c.C1542T	p.A514A	.	.	40	4	51	0	.	167
NARF	26502	bcgsc.ca	37	17	80443459	80443459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NARF	NM_012336	exon10	c.A1058G	p.Q353R	.	.	62	4	69	0	.	226
NBAS	51594	bcgsc.ca	37	2	15374833	15374833	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NBAS	NM_015909	exon46	c.C5982A	p.S1994S	.	.	77	4	73	0	.	94
NBEA	26960	bcgsc.ca	37	13	35770273	35770273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NBEA	NM_015678	exon31	c.A5200G	p.S1734G	.	.	74	4	78	0	.	144
NBEA	26960	bcgsc.ca	37	13	35923315	35923315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NBEA	NM_015678	exon37	c.C5974A	p.Q1992K	.	.	89	4	131	0	.	144
NBEAL1	65065	bcgsc.ca	37	2	204001447	204001447	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NBEAL1	NM_001114132	exon28	c.A4428G	p.K1476K	.	.	86	4	70	0	.	92
NCAPD3	23310	bcgsc.ca	37	11	134073747	134073747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCAPD3	NM_015261	exon11	c.G1270A	p.E424K	.	.	51	4	38	0	.	229
NCAPG	64151	bcgsc.ca	37	4	17825333	17825333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCAPG	NM_022346	exon9	c.T1323C	p.V441V	.	.	155	5	170	0	.	153
NCBP1	4686	bcgsc.ca	37	9	100413599	100413599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCBP1	NM_002486	exon10	c.C1003A	p.Q335K	.	.	55	4	68	0	.	90
NCL	4691	bcgsc.ca	37	2	232325387	232325387	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCL	NM_005381	exon4	c.G804A	p.E268E	.	.	119	7	87	0	.	230
NCLN	56926	ucsc.edu;bcgsc.ca	37	19	3204024	3204024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCLN	NM_020170	exon8	c.A911G	p.N304S	.	.	46	4	56	0	.	90
NCOA2	10499	bcgsc.ca	37	8	71069150	71069150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCOA2	NM_006540	exon11	c.T1450C	p.S484P	.	.	101	5	83	0	.	639
NCOA7	135112	bcgsc.ca	37	6	126203622	126203622	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCOA7	NM_001199619	exon8	c.G624A	p.S208S	.	.	50	4	41	0	.	227
NCOR1	9611	bcgsc.ca	37	17	15961001	15961001	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCOR1	NM_006311	exon40	c.C6219A	p.P2073P	.	.	52	4	63	0	.	229
NCOR1	9611	bcgsc.ca	37	17	16042335	16042335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NCOR1	NM_001190440	exon11	c.A1339G	p.I447V	.	.	125	5	130	0	.	229
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	12778	12778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	ENST00000361567	exon1	c.G442A	p.G148R	.	.	261	7	153	0	.	.
NDUFB5	4711	bcgsc.ca	37	3	179341716	179341716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NDUFB5	NM_002492	exon6	c.A458G	p.E153G	.	.	130	5	123	0	.	91
NEB	4703	bcgsc.ca	37	2	152566996	152566996	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NEB	NM_004543	exon11	c.T879C	p.P293P	.	.	89	5	55	0	.	145
NEB	4703	broad.mit.edu	37	2	152487705	152487705	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NEB	NM_001271208	exon66	c.T9570C	p.D3190D	.	.	120	8	89	0	.	145
NEBL	10529	bcgsc.ca	37	10	21461359	21461359	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NEBL	NM_001173484	exon2	c.C117T	p.L39L	.	.	61	4	67	0	.	92
NEFM	4741	bcgsc.ca	37	8	24775179	24775179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NEFM	NM_005382	exon3	c.A1811G	p.D604G	.	.	92	4	131	0	.	577
NEFM	4741	bcgsc.ca	37	8	24775963	24775963	+	Silent	SNP	G	G	A	rs147964775		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NEFM	NM_005382	exon3	c.G2595A	p.G865G	.	.	82	5	103	0	G|1.000;A|0.000	577
NELFCD	51497	bcgsc.ca	37	20	57564628	57564628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_198976	exon6	c.G644A	p.R215Q	.	.	67	4	86	0	.	.
NFATC2IP	84901	bcgsc.ca	37	16	28970339	28970339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NFATC2IP	NM_032815	exon7	c.A1019G	p.E340G	.	.	47	4	36	0	.	91
NFKB1	4790	ucsc.edu;bcgsc.ca	37	4	103533727	103533727	+	Silent	SNP	T	T	C	rs147169338	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NFKB1	NM_003998	exon22	c.T2556C	p.S852S	.	.	34	4	25	0	T|1.000;G|0.000	912
NFRKB	4798	bcgsc.ca	37	11	129753033	129753033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NFRKB	NM_006165	exon7	c.G960T	p.R320S	.	.	57	4	60	0	.	93
NIPAL1	152519	bcgsc.ca	37	4	48036990	48036990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NIPAL1	NM_207330	exon5	c.T554C	p.V185A	.	.	77	5	86	0	.	68
NISCH	11188	ucsc.edu;bcgsc.ca	37	3	52525524	52525524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NISCH	NM_007184	exon20	c.C3899T	p.T1300I	.	.	34	4	45	0	.	93
NLGN1	22871	bcgsc.ca	37	3	173998348	173998348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NLGN1	NM_014932	exon7	c.C1727T	p.T576I	.	.	82	5	81	0	.	231
NLRP12	91662	bcgsc.ca	37	19	54308638	54308638	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NLRP12	NM_144687	exon5	c.A2310T	p.T770T	.	.	76	4	58	0	.	211
NNT	23530	bcgsc.ca	37	5	43655983	43655983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NNT	NM_182977	exon15	c.C2101A	p.Q701K	.	.	97	4	70	0	.	92
NNT	23530	bcgsc.ca	37	5	43656039	43656039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NNT	NM_182977	exon15	c.A2157G	p.I719M	.	.	81	4	72	0	.	92
NOC4L	79050	ucsc.edu	37	12	132636662	132636662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOC4L	NM_024078	exon14	c.A1351G	p.K451E	.	.	28	4	13	0	.	90
NOP56	10528	ucsc.edu	37	20	2635593	2635593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOP56	NM_006392	exon5	c.G569T	p.R190M	.	.	22	4	19	0	.	92
NOP58	51602	bcgsc.ca	37	2	203160395	203160395	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOP58	NM_015934	exon10	c.908-2A>G	.	.	.	155	7	128	0	.	90
NOTCH2	4853	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120529697	120529697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOTCH2	NM_001200001	exon5	c.G760A	p.G254R	.	.	27	6	19	0	.	1441
NOX4	50507	bcgsc.ca	37	11	89135595	89135595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NOX4	NM_001143836	exon9	c.G745A	p.E249K	.	.	50	4	59	0	.	515
NPAT	4863	bcgsc.ca	37	11	108044352	108044352	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPAT	NM_002519	exon13	c.T1359A	p.F453L	.	.	132	5	171	0	.	117
NPEPPS	9520	bcgsc.ca	37	17	45679029	45679029	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPEPPS	NM_006310	exon15	c.C1656A	p.P552P	.	.	53	4	52	0	.	90
NPHP3	27031	bcgsc.ca	37	3	132407603	132407603	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPHP3	NM_153240	exon21	c.C3016A	p.Q1006K	.	.	85	4	149	0	.	91
NPR1	4881	ucsc.edu;bcgsc.ca	37	1	153660119	153660119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NPR1	NM_000906	exon14	c.G2102T	p.W701L	.	.	42	4	33	0	.	393
NR2C1	7181	bcgsc.ca	37	12	95445584	95445584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NR2C1	NM_001032287	exon8	c.T919C	p.S307P	.	.	82	6	50	0	.	187
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115417257	115417257	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NRAP	NM_001261463	exon4	c.C332A	p.A111E	.	.	37	4	39	0	.	522
NRIP2	83714	bcgsc.ca	37	12	2943900	2943900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NRIP2	NM_031474	exon1	c.C250T	p.R84W	.	.	57	5	54	0	.	187
NRK	203447	bcgsc.ca	37	X	105165985	105165985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NRK	NM_198465	exon17	c.A2542G	p.T848A	.	.	70	4	74	0	.	630
NSMCE1	197370	ucsc.edu;bcgsc.ca	37	16	27238075	27238075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NSMCE1	NM_145080	exon6	c.A566G	p.K189R	.	.	43	5	34	0	.	90
NSUN3	63899	bcgsc.ca	37	3	93803011	93803011	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NSUN3	NM_022072	exon3	c.T183C	p.Y61Y	.	.	71	4	67	0	.	91
NTRK1	4914	bcgsc.ca	37	1	156841487	156841487	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NTRK1	NM_001012331	exon7	c.A790G	p.T264A	.	.	35	4	44	1	.	1393
NTRK2	4915	bcgsc.ca	37	9	87285732	87285732	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NTRK2	NM_001018065	exon2	c.G69A	p.V23V	.	.	39	4	79	0	.	1404
NTRK2	4915	bcgsc.ca	37	9	87325588	87325588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NTRK2	NM_001018065	exon6	c.C465A	p.D155E	.	.	70	4	77	0	.	1404
NUCB1	4924	bcgsc.ca	37	19	49425625	49425625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUCB1	NM_006184	exon13	c.T1330C	p.S444P	.	.	52	4	61	1	.	90
NUDT5	11164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	12221083	12221083	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUDT5	NM_014142	exon4	c.T180C	p.D60D	.	.	80	35	90	1	.	92
NUDT6	11162	bcgsc.ca	37	4	123818831	123818831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUDT6	NM_007083	exon4	c.G501T	p.L167F	.	.	169	5	209	0	.	90
NUP35	129401	bcgsc.ca	37	2	184024281	184024281	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	NUP35	NM_138285	exon8	c.C804A	p.I268I	.	.	73	4	49	0	.	204
OAS1	4938	ucsc.edu;bcgsc.ca	37	12	113354512	113354512	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OAS1	NM_001032409	exon4	c.A853G	p.K285E	.	.	47	4	43	0	.	70
OAZ3	51686	bcgsc.ca	37	1	151739211	151739211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	47	4	72	0	.	.
OBSCN	84033	bcgsc.ca	37	1	228470769	228470769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OBSCN	NM_001271223	exon37	c.G9808T	p.G3270W	.	.	59	4	35	0	.	403
OGDHL	55753	bcgsc.ca	37	10	50944154	50944154	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OGDHL	NM_018245	exon22	c.T2824C	p.C942R	.	.	36	6	55	0	.	69
OGFRL1	79627	ucsc.edu;bcgsc.ca	37	6	72011093	72011093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OGFRL1	NM_024576	exon7	c.C697A	p.Q233K	.	.	36	5	41	0	.	68
OGN	4969	bcgsc.ca	37	9	95152179	95152179	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OGN	NM_033014	exon5	c.A587T	p.Y196F	.	.	96	4	111	0	.	492
OLAH	55301	bcgsc.ca	37	10	15106458	15106458	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OLAH	NM_018324	exon6	c.C518T	p.P173L	.	.	76	5	64	0	.	68
OMA1	115209	bcgsc.ca	37	1	58996383	58996383	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OMA1	NM_145243	exon6	c.G1030A	p.V344I	.	.	59	4	76	0	.	131
OPA1	4976	bcgsc.ca	37	3	193376678	193376678	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OPA1	NM_130837	exon24	c.G2334A	p.R778R	.	.	72	4	83	0	.	68
OR11G2	390439	bcgsc.ca	37	14	20665891	20665891	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR11G2	NM_001005503	exon1	c.T397C	p.S133P	.	.	71	4	73	0	.	70
OR2G3	81469	bcgsc.ca	37	1	247769214	247769214	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR2G3	NM_001001914	exon1	c.C327T	p.S109S	.	.	120	6	182	0	.	68
OR2M7	391196	bcgsc.ca	37	1	248487791	248487791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR2M7	NM_001004691	exon1	c.T80C	p.L27P	.	.	146	6	144	0	.	70
OR2V1	26693	bcgsc.ca	37	5	180551466	180551466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001258283	exon1	c.C839A	p.T280K	.	.	77	4	60	0	.	.
OR4C16	219428	bcgsc.ca	37	11	55340319	55340319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR4C16	NM_001004701	exon1	c.T716C	p.V239A	.	.	81	5	113	1	.	70
OR52K2	119774	bcgsc.ca	37	11	4471416	4471416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR52K2	NM_001005172	exon1	c.C847A	p.L283M	.	.	62	5	63	0	.	70
OR6K2	81448	bcgsc.ca	37	1	158670334	158670334	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR6K2	NM_001005279	exon1	c.T109C	p.F37L	.	.	50	4	45	0	.	69
OR6K3	391114	bcgsc.ca	37	1	158687867	158687867	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR6K3	NM_001005327	exon1	c.C39A	p.I13I	.	.	83	4	70	0	.	70
OR6K6	128371	ucsc.edu;bcgsc.ca	37	1	158724983	158724983	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OR6K6	NM_001005184	exon1	c.C378A	p.L126L	.	.	41	4	33	0	.	69
OSBPL1A	114876	bcgsc.ca	37	18	21758052	21758052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OSBPL1A	NM_080597	exon21	c.T2018C	p.I673T	.	.	96	5	82	0	.	94
OSBPL1A	114876	bcgsc.ca	37	18	21860809	21860809	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OSBPL1A	NM_080597	exon15	c.A1278G	p.E426E	.	.	63	4	32	0	.	94
OST4	100128731	ucsc.edu;bcgsc.ca	37	2	27294250	27294250	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001134693	exon2	c.C81T	p.Y27Y	.	.	41	6	38	0	.	.
OTOA	146183	bcgsc.ca	37	16	21728274	21728274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OTOA	NM_144672	exon14	c.G1535T	p.G512V	.	.	60	5	61	0	.	92
OTOGL	283310	bcgsc.ca	37	12	80645863	80645863	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_173591	exon12	c.A1140G	p.K380K	.	.	155	6	97	0	.	.
OTOP2	92736	bcgsc.ca	37	17	72921704	72921704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	OTOP2	NM_178160	exon3	c.G367T	p.G123C	.	.	73	5	58	0	.	134
P2RX5	5026	bcgsc.ca	37	17	3592005	3592005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	P2RX5	NM_002561	exon8	c.G802T	p.A268S	.	.	59	4	86	0	.	22
PABPC3	5042	bcgsc.ca	37	13	25671825	25671825	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PABPC3	NM_030979	exon1	c.A1489G	p.T497A	.	.	20	3	32	1	.	72
PABPC4L	132430	bcgsc.ca	37	4	135121995	135121995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001114734	exon2	c.G354T	p.Q118H	.	.	23	3	34	0	.	.
PAICS	10606	ucsc.edu;bcgsc.ca	37	4	57302496	57302496	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAICS	NM_006452	exon2	c.16+2T>C	.	.	.	38	4	58	0	.	68
PAK2	5062	bcgsc.ca	37	3	196534786	196534786	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAK2	NM_002577	exon7	c.709+1G>T	.	.	.	52	4	70	0	.	957
PAK2	5062	bcgsc.ca	37	3	196539635	196539635	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAK2	NM_002577	exon10	c.A848G	p.Q283R	.	.	48	4	39	0	.	957
PALM3	342979	bcgsc.ca	37	19	14165465	14165465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PALM3	NM_001145028	exon6	c.G974T	p.S325I	.	.	57	4	69	0	.	24
PANX3	116337	bcgsc.ca	37	11	124489615	124489615	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PANX3	NM_052959	exon4	c.T963C	p.C321C	.	.	93	6	101	0	.	68
PAPD5	64282	bcgsc.ca	37	16	50263158	50263158	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPD5	NM_001040284	exon13	c.A2016G	p.Q672Q	.	.	95	6	93	0	.	205
PAPOLG	64895	bcgsc.ca	37	2	60987359	60987359	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPOLG	NM_022894	exon2	c.T108C	p.I36I	.	.	174	5	170	2	.	69
PAPPA2	60676	bcgsc.ca	37	1	176563738	176563738	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPPA2	NM_021936	exon3	c.A998G	p.K333R	.	.	52	4	62	0	.	548
PAPPA	5069	ucsc.edu;bcgsc.ca	37	9	119116037	119116037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAPPA	NM_002581	exon17	c.T4312C	p.C1438R	.	.	45	4	86	0	.	77
PAQR3	152559	ucsc.edu;bcgsc.ca	37	4	79856387	79856387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAQR3	NM_001040202	exon2	c.G236T	p.G79V	.	.	28	4	32	0	.	46
PARL	55486	bcgsc.ca	37	3	183584431	183584431	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PARL	NM_018622	exon3	c.A444G	p.E148E	.	.	73	4	76	0	.	90
PARP14	54625	bcgsc.ca	37	3	122414389	122414389	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PARP14	NM_017554	exon5	c.G715T	p.A239S	.	.	89	5	86	0	.	525
PARP14	54625	bcgsc.ca	37	3	122418403	122418403	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PARP14	NM_017554	exon6	c.A1002T	p.L334F	.	.	53	4	43	0	.	525
PARP3	10039	ucsc.edu	37	3	51980249	51980249	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PARP3	NM_001003931	exon9	c.C1187A	p.A396D	.	.	37	4	57	0	.	660
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223066132	223066132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX3	NM_181459	exon9	c.G1450A	p.A484T	.	.	61	22	58	0	.	1821
PAX8	7849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113993092	113993092	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PAX8	NM_003466	exon9	c.C966T	p.S322S	.	.	76	12	75	0	.	684
PBRM1	55193	bcgsc.ca	37	3	52610600	52610600	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PBRM1	NM_018313	exon23	c.T3573C	p.F1191F	.	.	43	4	78	0	.	575
PC	5091	ucsc.edu;bcgsc.ca	37	11	66619923	66619923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PC	NM_000920	exon14	c.G1812A	p.M604I	.	.	24	4	52	0	.	228
PCDH10	57575	bcgsc.ca	37	4	134073184	134073184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDH10	NM_032961	exon1	c.G1889A	p.R630H	.	.	15	3	41	0	.	92
PCDH10	57575	ucsc.edu	37	4	134072929	134072929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDH10	NM_032961	exon1	c.C1634T	p.A545V	.	.	40	4	53	0	.	92
PCDH18	54510	bcgsc.ca	37	4	138449781	138449781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDH18	NM_019035	exon3	c.A2591G	p.D864G	.	.	92	5	68	0	.	185
PCDHA12	56137	bcgsc.ca	37	5	140257387	140257387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_018903	exon1	c.A2330G	p.Q777R	.	.	57	4	53	0	.	.
PCDHA13	56136	ucsc.edu	37	5	140263457	140263457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHA13	NM_031865	exon1	c.T1604C	p.V535A	.	.	38	4	78	0	.	75
PCDHA1	56147	bcgsc.ca	37	5	140167250	140167250	+	Missense_Mutation	SNP	G	G	A	rs148084373		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHA1	NM_031411	exon1	c.G1375A	p.E459K	.	.	100	5	124	0	G|1.000;A|0.000	23
PCDHA2	56146	bcgsc.ca	37	5	140174876	140174876	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHA2	NM_031495	exon1	c.C327T	p.I109I	.	.	56	4	68	1	.	94
PCDHB11	56125	bcgsc.ca	37	5	140580105	140580105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHB11	NM_018931	exon1	c.A758G	p.E253G	.	.	106	6	88	0	.	96
PCDHB15	56121	ucsc.edu;bcgsc.ca	37	5	140627378	140627378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCDHB15	NM_018935	exon1	c.C2232T	p.T744T	.	.	49	5	56	0	.	156
PCID2	55795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113835485	113835485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCID2	NM_001258212	exon10	c.A907G	p.R303G	.	.	31	11	54	0	.	90
PCLO	27445	bcgsc.ca	37	7	82582207	82582207	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCLO	NM_014510	exon5	c.A8062G	p.S2688G	.	.	95	4	72	0	.	29
PCLO	27445	bcgsc.ca	37	7	82585399	82585399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCLO	NM_014510	exon5	c.G4870A	p.G1624R	.	.	81	4	43	0	.	29
PCM1	5108	bcgsc.ca	37	8	17830050	17830050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCM1	NM_006197	exon23	c.A3797G	p.D1266G	.	.	95	4	90	0	.	742
PCNX	22990	bcgsc.ca	37	14	71443812	71443812	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCNX	NM_014982	exon6	c.A758G	p.Q253R	.	.	95	7	115	0	.	91
PCNX	22990	bcgsc.ca	37	14	71476413	71476413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCNX	NM_014982	exon9	c.C2692T	p.P898S	.	.	57	4	62	0	.	91
PCNX	22990	bcgsc.ca	37	14	71524366	71524366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCNX	NM_014982	exon26	c.C4777A	p.L1593I	.	.	75	6	88	0	.	91
PCNX	22990	bcgsc.ca	37	14	71568903	71568903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCNX	NM_014982	exon31	c.T5786C	p.L1929P	.	.	58	4	58	0	.	91
PCSK2	5126	ucsc.edu	37	20	17437013	17437013	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCSK2	NM_002594	exon10	c.C1122A	p.G374G	.	.	49	4	35	0	.	157
PCTP	58488	bcgsc.ca	37	17	53844799	53844799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PCTP	NM_021213	exon2	c.A245G	p.D82G	.	.	75	4	87	0	.	91
PDCD6IP	10015	bcgsc.ca	37	3	33879722	33879722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDCD6IP	NM_001162429	exon9	c.T1099C	p.S367P	.	.	129	5	133	1	.	228
PDE10A	10846	bcgsc.ca	37	6	165808689	165808689	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDE10A	NM_001130690	exon15	c.C1486A	p.R496R	.	.	79	4	90	0	.	519
PDE1C	5137	bcgsc.ca	37	7	31864588	31864588	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDE1C	NM_001191058	exon14	c.C1479T	p.F493F	.	.	57	4	39	0	.	94
PDE4B	5142	bcgsc.ca	37	1	66384393	66384393	+	Missense_Mutation	SNP	A	A	T	rs79691733	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDE4B	NM_001037341	exon3	c.A156T	p.L52F	.	.	68	4	74	0	.	92
PDE6D	5147	ucsc.edu	37	2	232646575	232646575	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDE6D	.	.	.	.	.	.	38	4	15	0	.	90
PDGFC	56034	bcgsc.ca	37	4	157891966	157891966	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PDGFC	NM_016205	exon1	c.C90T	p.F30F	.	.	48	4	54	0	.	525
PEG10	23089	broad.mit.edu	37	7	94293687	94293687	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PEG10	NM_001172438	exon2	c.G1047A	p.P349P	.	.	30	5	39	0	.	23
PENK	5179	bcgsc.ca	37	8	57354031	57354031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PENK	NM_001135690	exon4	c.G604A	p.E202K	.	.	55	4	31	1	.	517
PER3	8863	bcgsc.ca	37	1	7895865	7895865	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PER3	NM_016831	exon19	c.T3231C	p.S1077S	.	.	117	6	146	1	.	93
PEX3	8504	bcgsc.ca	37	6	143800234	143800234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PEX3	NM_003630	exon10	c.G840T	p.L280F	.	.	91	5	148	0	.	91
PEX5	5830	bcgsc.ca	37	12	7344289	7344289	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PEX5	NM_001131023	exon5	c.A486G	p.E162E	.	.	58	4	38	0	.	91
PGBD5	79605	ucsc.edu;bcgsc.ca	37	1	230461062	230461062	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PGBD5	NM_001258311	exon6	c.A1373T	p.Y458F	.	.	52	5	56	0	.	93
PHC2	1912	ucsc.edu;bcgsc.ca	37	1	33832734	33832734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHC2	NM_198040	exon6	c.A959G	p.H320R	.	.	43	4	43	0	.	227
PHF10	55274	bcgsc.ca	37	6	170112482	170112482	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHF10	NM_018288	exon8	c.G957T	p.S319S	.	.	77	4	119	0	.	226
PHF1	5252	bcgsc.ca	37	6	33382045	33382045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHF1	NM_024165	exon9	c.T778A	p.Y260N	.	.	79	4	121	0	.	226
PHLDB2	90102	ucsc.edu;bcgsc.ca	37	3	111671497	111671497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PHLDB2	NM_001134439	exon11	c.A2710G	p.T904A	.	.	39	4	56	0	.	96
PIEZO2	63895	bcgsc.ca	37	18	10696461	10696461	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_022068	exon42	c.G6565A	p.V2189M	.	.	77	5	86	0	.	.
PIGA	5277	bcgsc.ca	37	X	15339636	15339636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIGA	NM_002641	exon6	c.A1447G	p.T483A	.	.	200	7	208	0	.	226
PIGF	5281	bcgsc.ca	37	2	46840910	46840910	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIGF	NM_002643	exon3	c.G243T	p.L81F	.	.	263	8	302	0	.	226
PIGH	5283	bcgsc.ca	37	14	68059391	68059391	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIGH	NM_004569	exon3	c.G435T	p.V145V	.	.	129	5	141	0	.	227
PIGK	10026	bcgsc.ca	37	1	77629563	77629563	+	Silent	SNP	C	C	A	rs17099989	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIGK	NM_005482	exon6	c.G552T	p.A184A	.	.	57	5	53	0	C|0.976;T|0.024	229
PIGN	23556	bcgsc.ca	37	18	59828509	59828509	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIGN	NM_176787	exon4	c.T78C	p.S26S	.	.	68	4	47	0	.	227
PIK3C2G	5288	bcgsc.ca	37	12	18544118	18544118	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIK3C2G	NM_004570	exon14	c.T1935C	p.N645N	.	.	98	5	53	0	.	1312
PIK3CB	5291	bcgsc.ca	37	3	138409958	138409958	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIK3CB	NM_006219	exon13	c.A1920T	p.L640F	.	.	125	5	108	1	.	1311
PIK3CD	5293	ucsc.edu;bcgsc.ca	37	1	9776674	9776674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIK3CD	NM_005026	exon6	c.C777A	p.F259L	.	.	39	4	50	0	.	1311
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209198115	209198115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon24	c.G4040A	p.G1347E	.	.	65	6	45	0	.	583
PIKFYVE	200576	ucsc.edu;bcgsc.ca	37	2	209203240	209203240	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIKFYVE	NM_015040	exon29	c.G4620T	p.A1540A	.	.	38	4	70	0	.	583
PIR	8544	bcgsc.ca	37	X	15473991	15473991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PIR	NM_001018109	exon5	c.G460A	p.G154R	.	.	83	6	114	0	.	131
PISD	23761	bcgsc.ca	37	22	32015746	32015746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PISD	NM_014338	exon9	c.A980G	p.E327G	.	.	71	4	128	0	.	91
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67264809	67264809	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PITPNM1	NM_001130848	exon14	c.C2039T	p.P680L	.	.	38	4	49	0	.	227
PKD1L1	168507	bcgsc.ca	37	7	47921530	47921530	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PKD1L1	NM_138295	exon20	c.T3419C	p.V1140A	.	.	66	4	56	0	.	145
PKHD1	5314	bcgsc.ca	37	6	51524313	51524313	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PKHD1	NM_138694	exon61	c.C10611T	p.N3537N	.	.	57	4	35	0	.	603
PKHD1L1	93035	bcgsc.ca	37	8	110456037	110456037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PKHD1L1	NM_177531	exon37	c.C4697A	p.P1566Q	.	.	110	4	61	0	.	145
PKHD1L1	93035	bcgsc.ca	37	8	110510722	110510722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PKHD1L1	NM_177531	exon66	c.T10631C	p.F3544S	.	.	149	5	100	0	.	145
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160804063	160804063	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLA2R1	NM_001195641	exon26	c.A3717G	p.R1239R	.	.	118	21	77	0	.	93
PLBD2	196463	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	113824744	113824744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLBD2	NM_173542	exon10	c.C1289T	p.S430F	.	.	30	15	18	0	.	68
PLCB1	23236	bcgsc.ca	37	20	8745808	8745808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCB1	NM_015192	exon26	c.T2733G	p.I911M	.	.	120	5	165	0	.	297
PLCE1	51196	bcgsc.ca	37	10	96006319	96006319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCE1	NM_016341	exon8	c.A3037G	p.R1013G	.	.	29	3	32	0	.	229
PLCH1	23007	bcgsc.ca	37	3	155200422	155200422	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCH1	NM_001130960	exon23	c.A3417G	p.E1139E	.	.	101	6	80	0	.	151
PLCL2	23228	ucsc.edu;bcgsc.ca	37	3	17053597	17053597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLCL2	NM_015184	exon2	c.T2381A	p.F794Y	.	.	39	4	56	0	.	229
PLD1	5337	bcgsc.ca	37	3	171455729	171455729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLD1	NM_002662	exon2	c.A113G	p.E38G	.	.	67	5	93	0	.	660
PLEC	5339	bcgsc.ca	37	8	145006342	145006342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLEC	NM_201380	exon17	c.G2449A	p.D817N	.	.	56	6	71	0	.	141
PLEKHG4	25894	ucsc.edu;bcgsc.ca	37	16	67320715	67320715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLEKHG4	NM_001129728	exon17	c.C2818A	p.H940N	.	.	39	4	40	0	.	92
PLEKHM1	9842	bcgsc.ca	37	17	43545876	43545876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLEKHM1	NM_014798	exon5	c.A1007G	p.Q336R	.	.	65	4	85	0	.	90
PLOD1	5351	ucsc.edu;bcgsc.ca	37	1	12020740	12020740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLOD1	NM_000302	exon10	c.C1013T	p.A338V	.	.	35	4	36	0	.	155
PLSCR4	57088	bcgsc.ca	37	3	145917753	145917753	+	Silent	SNP	G	G	T	rs201384386	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLSCR4	NM_020353	exon6	c.C471A	p.T157T	.	.	74	4	89	0	G|1.000;A|0.000	90
PLXNA2	5362	bcgsc.ca	37	1	208219360	208219360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLXNA2	NM_025179	exon18	c.G3358A	p.G1120R	.	.	63	4	62	0	.	92
PLXNB1	5364	bcgsc.ca	37	3	48455103	48455103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PLXNB1	NM_001130082	exon23	c.T4511C	p.V1504A	.	.	27	4	63	0	.	293
PMP2	5375	bcgsc.ca	37	8	82357124	82357124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PMP2	NM_002677	exon2	c.T174A	p.F58L	.	.	144	5	121	0	.	90
PMPCB	9512	bcgsc.ca	37	7	102950763	102950763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PMPCB	NM_004279	exon9	c.A995G	p.N332S	.	.	70	5	32	0	.	94
PMS1	5378	bcgsc.ca	37	2	190656600	190656600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PMS1	NM_001128143	exon2	c.T65C	p.V22A	.	.	60	4	37	0	.	1396
PNPLA7	375775	bcgsc.ca	37	9	140417236	140417236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PNPLA7	NM_001098537	exon9	c.C821A	p.A274E	.	.	52	4	77	0	.	91
POLA2	23649	bcgsc.ca	37	11	65048579	65048579	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POLA2	NM_002689	exon8	c.T861C	p.D287D	.	.	87	5	102	0	.	227
POLD3	10714	bcgsc.ca	37	11	74305140	74305140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POLD3	NM_006591	exon2	c.T95C	p.V32A	.	.	68	4	72	1	.	230
POLR1B	84172	bcgsc.ca	37	2	113305049	113305049	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POLR1B	NM_019014	exon3	c.T397C	p.F133L	.	.	98	5	105	0	.	91
POLR2B	5431	bcgsc.ca	37	4	57883398	57883398	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POLR2B	NM_000938	exon15	c.T2145C	p.D715D	.	.	168	6	221	0	.	92
POLR3B	55703	bcgsc.ca	37	12	106830880	106830880	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POLR3B	NM_018082	exon17	c.A1827G	p.K609K	.	.	84	5	50	0	.	91
POMT2	29954	ucsc.edu	37	14	77769222	77769222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POMT2	NM_013382	exon5	c.G612A	p.M204I	.	.	31	4	23	0	.	91
POSTN	10631	bcgsc.ca	37	13	38154772	38154772	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POSTN	NM_006475	exon11	c.T1455C	p.I485I	.	.	87	6	121	1	.	516
POSTN	10631	bcgsc.ca	37	13	38156622	38156622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POSTN	NM_006475	exon10	c.C1273A	p.L425I	.	.	55	4	56	0	.	516
POTEA	340441	bcgsc.ca	37	8	43171064	43171064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	POTEA	NM_001005365	exon7	c.A935G	p.E312G	.	.	229	8	198	2	.	91
PPAPDC1B	84513	bcgsc.ca	37	8	38123701	38123701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_032483	exon6	c.A592G	p.I198V	.	.	84	5	118	0	.	.
PPEF2	5470	bcgsc.ca	37	4	76813061	76813061	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PPEF2	NM_006239	exon3	c.T126C	p.R42R	.	.	54	4	58	0	.	228
PPP1R12A	4659	bcgsc.ca	37	12	80192289	80192289	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PPP1R12A	NM_002480	exon15	c.T2076A	p.S692S	.	.	139	5	104	0	.	273
PPP1R21	129285	bcgsc.ca	37	2	48685311	48685311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_152994	exon4	c.T320C	p.V107A	.	.	183	6	154	0	.	.
PPP1R32	220004	bcgsc.ca	37	11	61253867	61253867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_145017	exon8	c.C739A	p.H247N	.	.	52	4	55	0	.	.
PPY2	23614	bcgsc.ca	37	17	26574662	26574662	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	16	3	32	0	.	.
PQLC1	80148	ucsc.edu;bcgsc.ca	37	18	77710729	77710729	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PQLC1	NM_025078	exon2	c.C198T	p.L66L	.	.	51	5	73	0	.	154
PRADC1	84279	bcgsc.ca	37	2	73457249	73457249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRADC1	NM_032319	exon2	c.G160A	p.G54S	.	.	50	4	48	0	.	90
PRCC	5546	bcgsc.ca	37	1	156756618	156756618	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRCC	NM_005973	exon3	c.C735T	p.I245I	.	.	49	4	40	0	.	514
PRDM10	56980	bcgsc.ca	37	11	129794843	129794843	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRDM10	NM_020228	exon13	c.C1824T	p.A608A	.	.	44	4	45	0	.	91
PRDM8	56978	ucsc.edu	37	4	81121406	81121406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRDM8	NM_001099403	exon2	c.A172T	p.I58L	.	.	47	4	86	0	.	91
PRDX4	10549	bcgsc.ca	37	X	23701803	23701803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRDX4	NM_006406	exon6	c.G746T	p.W249L	.	.	77	4	57	0	.	131
PRKAG2	51422	bcgsc.ca	37	7	151372632	151372632	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKAG2	NM_016203	exon4	c.G558A	p.R186R	.	.	78	4	91	0	.	658
PRKCI	5584	bcgsc.ca	37	3	170011273	170011273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKCI	NM_002740	exon14	c.A1394G	p.N465S	.	.	78	4	124	1	.	1378
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207834	47207834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRKD2	NM_016457	exon4	c.G584A	p.R195H	.	.	47	13	31	0	.	759
PRMT5	10419	bcgsc.ca	37	14	23390211	23390211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRMT5	NM_006109	exon17	c.A1816G	p.S606G	.	.	14	3	22	0	.	91
PROSER1	80209	bcgsc.ca	37	13	39598610	39598610	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_025138	exon7	c.A564G	p.P188P	.	.	100	4	114	0	.	.
PRPSAP1	5635	bcgsc.ca	37	17	74326678	74326678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRPSAP1	NM_002766	exon5	c.A533G	p.D178G	.	.	55	4	60	0	.	116
PRRC1	133619	bcgsc.ca	37	5	126869384	126869384	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRRC1	NM_130809	exon6	c.C827A	p.A276D	.	.	106	5	78	0	.	68
PRSS12	8492	bcgsc.ca	37	4	119220077	119220077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRSS12	NM_003619	exon9	c.A1648G	p.R550G	.	.	64	5	82	0	.	91
PRSS3	5646	ucsc.edu	37	9	33796673	33796673	+	Missense_Mutation	SNP	G	G	A	rs76740888		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRSS3	NM_007343	exon2	c.G244A	p.V82I	.	.	74	9	94	8	.	90
PRUNE2	158471	bcgsc.ca	37	9	79438594	79438594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PRUNE2	NM_015225	exon6	c.A710G	p.D237G	.	.	78	4	96	0	.	157
PSD2	84249	bcgsc.ca	37	5	139219741	139219741	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PSD2	NM_032289	exon14	c.T2098A	p.Y700N	.	.	65	4	71	0	.	91
PSKH2	85481	broad.mit.edu;bcgsc.ca	37	8	87076798	87076798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PSKH2	NM_033126	exon2	c.A248G	p.K83R	.	.	109	7	129	0	.	385
PSMA2	5683	bcgsc.ca	37	7	42957289	42957289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PSMA2	NM_002787	exon8	c.G589A	p.E197K	.	.	101	5	88	0	.	221
PTBP2	58155	bcgsc.ca	37	1	97278587	97278587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTBP2	NM_021190	exon13	c.C1391T	p.P464L	.	.	176	5	200	1	.	90
PTBP3	9991	bcgsc.ca	37	9	114989707	114989707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001244898	exon12	c.C1450A	p.H484N	.	.	75	4	73	0	.	.
PTGER2	5732	ucsc.edu	37	14	52781505	52781505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTGER2	NM_000956	exon1	c.T239C	p.L80P	.	.	35	4	33	0	.	658
PTH2R	5746	bcgsc.ca	37	2	209358266	209358266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTH2R	NM_005048	exon13	c.A1535G	p.E512G	.	.	75	4	88	0	.	502
PTPLB	201562	bcgsc.ca	37	3	123219542	123219542	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPLB	NM_198402	exon7	c.504-2A>T	.	.	.	45	4	42	0	.	226
PTPN14	5784	bcgsc.ca	37	1	214549691	214549691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPN14	NM_005401	exon15	c.C2778A	p.S926R	.	.	140	6	165	1	.	290
PTPN21	11099	bcgsc.ca	37	14	88946601	88946601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPN21	NM_007039	exon13	c.G1174T	p.G392C	.	.	57	4	70	1	.	230
PTPRD	5789	bcgsc.ca	37	9	8499694	8499694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPRD	NM_002839	exon25	c.C2275A	p.P759T	.	.	86	4	75	0	.	912
PTPRG	5793	bcgsc.ca	37	3	62187195	62187195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPRG	NM_002841	exon11	c.A1344G	p.I448M	.	.	81	4	194	0	.	419
PTPRG	5793	bcgsc.ca	37	3	62189279	62189279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PTPRG	NM_002841	exon12	c.G1810A	p.E604K	.	.	89	5	176	0	.	419
PYGM	5837	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	64522270	64522270	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PYGM	NM_005609	exon8	c.T894A	p.Y298X	.	.	41	8	37	0	.	92
PYROXD2	84795	bcgsc.ca	37	10	100150440	100150440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	PYROXD2	NM_032709	exon12	c.C1207A	p.Q403K	.	.	17	3	26	0	.	90
QRSL1	55278	ucsc.edu;bcgsc.ca	37	6	107113739	107113739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	QRSL1	NM_018292	exon11	c.T1449C	p.C483C	.	.	39	4	67	0	.	90
RAB23	51715	bcgsc.ca	37	6	57058705	57058705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAB23	NM_016277	exon6	c.T509C	p.L170P	.	.	195	6	279	0	.	660
RAB28	9364	bcgsc.ca	37	4	13462362	13462362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAB28	NM_004249	exon4	c.T352C	p.S118P	.	.	71	5	71	0	.	228
RAB33B	83452	bcgsc.ca	37	4	140394079	140394079	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAB33B	NM_031296	exon2	c.A489G	p.A163A	.	.	82	5	81	1	.	227
RABGAP1L	9910	bcgsc.ca	37	1	174959059	174959059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RABGAP1L	NM_001243765	exon9	c.T1034C	p.L345P	.	.	48	4	47	0	.	540
RAD21L1	642636	bcgsc.ca	37	20	1212183	1212183	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001136566	exon4	c.T288C	p.L96L	.	.	131	5	143	0	.	.
RAD51B	5890	ucsc.edu;bcgsc.ca	37	14	68331784	68331784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAD51B	NM_133509	exon5	c.T380C	p.L127S	.	.	38	4	30	0	.	660
RAE1	8480	bcgsc.ca	37	20	55929786	55929786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAE1	NM_003610	exon3	c.T109C	p.S37P	.	.	52	4	74	0	.	226
RALGAPA2	57186	bcgsc.ca	37	20	20493751	20493751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RALGAPA2	NM_020343	exon32	c.T4262C	p.F1421S	.	.	62	4	50	1	.	24
RANBP17	64901	bcgsc.ca	37	5	170336691	170336691	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RANBP17	NM_022897	exon6	c.A516G	p.K172K	.	.	85	4	32	0	.	524
RANBP2	5903	bcgsc.ca	37	2	109384021	109384021	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RANBP2	NM_006267	exon20	c.T7026C	p.Y2342Y	.	.	240	8	175	0	.	675
RAP1GDS1	5910	bcgsc.ca	37	4	99338648	99338648	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAP1GDS1	NM_001100426	exon9	c.T1041A	p.N347K	.	.	47	4	69	0	.	660
RAP2C	57826	bcgsc.ca	37	X	131348203	131348203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAP2C	NM_021183	exon3	c.T545C	p.V182A	.	.	94	4	148	1	.	848
RAPGEF2	9693	bcgsc.ca	37	4	160251551	160251551	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RAPGEF2	NM_014247	exon7	c.A885T	p.I295I	.	.	61	5	89	0	.	637
RARS2	57038	bcgsc.ca	37	6	88239269	88239269	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RARS2	NM_020320	exon10	c.T869A	p.L290Q	.	.	92	4	126	0	.	92
RASEF	158158	bcgsc.ca	37	9	85620341	85620341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RASEF	NM_152573	exon8	c.A1103G	p.N368S	.	.	53	4	112	0	.	280
RASGEF1A	221002	ucsc.edu	37	10	43697343	43697343	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RASGEF1A	NM_145313	exon4	c.G372T	p.W124C	.	.	29	4	32	0	.	227
RASGRP1	10125	bcgsc.ca	37	15	38803813	38803813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RASGRP1	NM_001128602	exon8	c.A958G	p.I320V	.	.	61	4	42	0	.	697
RASSF6	166824	bcgsc.ca	37	4	74459298	74459298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RASSF6	NM_201431	exon4	c.A253G	p.K85E	.	.	89	4	72	0	.	319
RBM25	58517	bcgsc.ca	37	14	73572975	73572975	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RBM25	NM_021239	exon12	c.A1449G	p.E483E	.	.	121	5	136	0	.	91
RBM45	129831	bcgsc.ca	37	2	178977441	178977441	+	Silent	SNP	G	G	T	rs201343083	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RBM45	NM_152945	exon1	c.G168T	p.V56V	.	.	79	4	102	2	G|0.999;A|0.001	22
RBM7	10179	bcgsc.ca	37	11	114278280	114278280	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RBM7	NM_016090	exon5	c.T552C	p.S184S	.	.	119	6	86	0	.	92
RC3H2	54542	bcgsc.ca	37	9	125620266	125620266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RC3H2	NM_018835	exon13	c.T2390C	p.L797P	.	.	91	5	122	0	.	523
RDX	5962	bcgsc.ca	37	11	110106902	110106902	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RDX	NM_001260493	exon12	c.T1266C	p.A422A	.	.	61	4	36	0	.	90
RELN	5649	bcgsc.ca	37	7	103206797	103206797	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RELN	NM_173054	exon33	c.A4810G	p.T1604A	.	.	96	5	72	0	.	574
RERE	473	bcgsc.ca	37	1	8684437	8684437	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RERE	NM_001042681	exon3	c.T328C	p.C110R	.	.	44	4	39	0	.	515
RETNLB	84666	ucsc.edu	37	3	108475991	108475991	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RETNLB	NM_032579	exon1	c.T42C	p.L14L	.	.	47	6	58	1	.	91
RETNLB	84666	ucsc.edu;bcgsc.ca	37	3	108476030	108476030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RETNLB	NM_032579	exon1	c.G3T	p.M1I	.	.	50	4	53	0	.	91
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111696640	111696640	+	Missense_Mutation	SNP	G	G	T	rs183900471	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	REV3L	NM_002912	exon13	c.C2918A	p.P973H	.	.	41	5	45	0	G|0.999;A|0.000	294
RFX4	5992	bcgsc.ca	37	12	107103133	107103133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RFX4	NM_001206691	exon9	c.G886T	p.A296S	.	.	77	5	56	0	.	91
RGL3	57139	bcgsc.ca	37	19	11526674	11526674	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RGL3	NM_001035223	exon5	c.G576A	p.L192L	.	.	55	4	47	0	.	227
RGN	9104	bcgsc.ca	37	X	46940549	46940549	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RGN	NM_004683	exon2	c.T6C	p.S2S	.	.	131	6	212	0	.	130
RGS13	6003	bcgsc.ca	37	1	192613500	192613500	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RGS13	NM_002927	exon4	c.C36T	p.C12C	.	.	190	7	283	0	.	226
RGS22	26166	bcgsc.ca	37	8	101078515	101078515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RGS22	NM_015668	exon7	c.A604T	p.T202S	.	.	86	4	88	0	.	140
RGS8	85397	bcgsc.ca	37	1	182635146	182635146	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RGS8	NM_033345	exon4	c.A205T	p.T69S	.	.	70	4	91	0	.	227
RHBDF1	64285	bcgsc.ca	37	16	111411	111411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RHBDF1	NM_022450	exon10	c.A1367G	p.Q456R	.	.	65	5	90	0	.	92
RHBDF2	79651	bcgsc.ca	37	17	74473332	74473332	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RHBDF2	NM_024599	exon8	c.T937C	p.S313P	.	.	44	5	57	0	.	90
RHOA	387	bcgsc.ca	37	3	49397759	49397759	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RHOA	NM_001664	exon5	c.G465A	p.G155G	.	.	72	4	64	0	.	1273
RILPL2	196383	bcgsc.ca	37	12	123915160	123915160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RILPL2	NM_145058	exon2	c.A386G	p.N129S	.	.	87	4	67	0	.	68
RIMBP2	23504	bcgsc.ca	37	12	130897186	130897186	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIMBP2	NM_015347	exon15	c.G2799T	p.L933L	.	.	54	5	44	0	.	142
RIMS1	22999	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	72892264	72892264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIMS1	NM_014989	exon6	c.T1090G	p.Y364D	.	.	45	20	121	1	.	144
RIMS1	22999	bcgsc.ca	37	6	72975171	72975171	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIMS1	NM_014989	exon21	c.A3273T	p.S1091S	.	.	62	4	78	0	.	144
RINL	126432	ucsc.edu;bcgsc.ca	37	19	39360320	39360320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RINL	NM_001195833	exon10	c.T1367C	p.L456P	.	.	45	6	43	0	.	91
RINT1	60561	bcgsc.ca	37	7	105190746	105190746	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RINT1	NM_021930	exon9	c.G1146A	p.E382E	.	.	126	6	130	0	.	517
RIPPLY1	92129	bcgsc.ca	37	X	106146455	106146455	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RIPPLY1	NM_138382	exon1	c.T63C	p.A21A	.	.	80	5	93	0	.	62
RNASE10	338879	ucsc.edu;bcgsc.ca	37	14	20979191	20979191	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNASE10	NM_001012975	exon1	c.T561C	p.T187T	.	.	35	5	35	0	.	90
RNF150	57484	bcgsc.ca	37	4	141868889	141868889	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNF150	NM_020724	exon4	c.A809G	p.E270G	.	.	48	4	68	0	.	227
RNF214	257160	bcgsc.ca	37	11	117115220	117115220	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNF214	NM_207343	exon5	c.A738G	p.K246K	.	.	109	5	116	0	.	90
RNMT	8731	bcgsc.ca	37	18	13752364	13752364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RNMT	NM_003799	exon10	c.A1297G	p.K433E	.	.	50	4	49	0	.	90
RNR2	6053	broad.mit.edu	37	MT	2816	2816	+	RNA	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	205	10	148	0	.	.
ROBO4	54538	bcgsc.ca	37	11	124761371	124761371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ROBO4	NM_019055	exon12	c.C1772T	p.S591F	.	.	51	4	59	0	.	92
ROCK2	9475	bcgsc.ca	37	2	11335136	11335136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ROCK2	NM_004850	exon28	c.G3464A	p.G1155E	.	.	76	4	43	0	.	546
RORB	6096	ucsc.edu	37	9	77280475	77280475	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RORB	NM_006914	exon7	c.G964T	p.G322X	.	.	39	4	64	0	.	229
RPAP1	26015	bcgsc.ca	37	15	41826988	41826988	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPAP1	NM_015540	exon6	c.A687G	p.E229E	.	.	68	4	61	0	.	153
RPAP3	79657	bcgsc.ca	37	12	48060803	48060803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPAP3	NM_024604	exon16	c.T1872A	p.F624L	.	.	73	4	72	0	.	69
RPE65	6121	bcgsc.ca	37	1	68910523	68910523	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPE65	NM_000329	exon4	c.A289G	p.R97G	.	.	82	5	75	0	.	91
RPGR	6103	bcgsc.ca	37	X	38132658	38132658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPGR	NM_000328	exon18	c.A2222G	p.D741G	.	.	159	6	197	0	.	131
RPH3A	22895	ucsc.edu	37	12	113306292	113306292	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPH3A	NM_001143854	exon8	c.C502T	p.Q168X	.	.	38	4	27	0	.	519
RPN1	6184	bcgsc.ca	37	3	128350872	128350872	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPN1	NM_002950	exon4	c.A762G	p.G254G	.	.	61	7	59	0	.	652
RPN1	6184	ucsc.edu	37	3	128345625	128345625	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPN1	NM_002950	exon6	c.C1087T	p.Q363X	.	.	31	4	24	0	.	652
RPRD1B	58490	bcgsc.ca	37	20	36718214	36718214	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RPRD1B	NM_021215	exon7	c.G918T	p.L306L	.	.	47	4	53	1	.	91
RRBP1	6238	bcgsc.ca	37	20	17640866	17640866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RRBP1	NM_004587	exon2	c.T287C	p.L96P	.	.	202	6	321	0	.	92
RSF1	51773	bcgsc.ca	37	11	77413489	77413489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RSF1	NM_016578	exon6	c.T785C	p.L262S	.	.	98	4	89	0	.	93
RTCA	8634	bcgsc.ca	37	1	100733074	100733074	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001130841	exon3	c.C165A	p.S55S	.	.	47	5	37	0	.	.
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62324537	62324537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RTEL1	NM_032957	exon30	c.G2965A	p.E989K	.	.	44	4	44	0	.	44
RTN3	10313	ucsc.edu	37	11	63487841	63487841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RTN3	NM_001265589	exon3	c.A1867G	p.T623A	.	.	44	4	23	0	.	91
RTN4	57142	bcgsc.ca	37	2	55214684	55214684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RTN4	NM_020532	exon4	c.G3164A	p.R1055K	.	.	63	4	75	0	.	155
RUFY1	80230	bcgsc.ca	37	5	179018717	179018717	+	Missense_Mutation	SNP	T	T	A	rs142906534	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RUFY1	NM_025158	exon10	c.T1220A	p.L407Q	.	.	60	5	58	0	T|1.000;C|0.000	157
RXRB	6257	bcgsc.ca	37	6	33166959	33166959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RXRB	NM_021976	exon2	c.T470C	p.V157A	.	.	70	4	103	0	.	189
RYR1	6261	bcgsc.ca	37	19	38980017	38980017	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR1	NM_001042723	exon35	c.G5748T	p.G1916G	.	.	56	5	41	0	.	100
RYR1	6261	bcgsc.ca	37	19	39062830	39062830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR1	NM_000540	exon95	c.A13918G	p.M4640V	.	.	62	4	54	0	.	100
RYR2	6262	bcgsc.ca	37	1	237693735	237693735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR2	NM_001035	exon25	c.T2831C	p.L944S	.	.	68	4	89	0	.	158
RYR2	6262	bcgsc.ca	37	1	237954784	237954784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR2	NM_001035	exon93	c.T13532C	p.F4511S	.	.	131	5	143	0	.	158
RYR3	6263	bcgsc.ca	37	15	34032137	34032137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR3	NM_001243996	exon51	c.G7761T	p.E2587D	.	.	65	4	44	0	.	520
RYR3	6263	ucsc.edu;bcgsc.ca	37	15	34030707	34030707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	RYR3	NM_001243996	exon50	c.G7572T	p.W2524C	.	.	59	5	35	0	.	520
SACM1L	22908	ucsc.edu	37	3	45744936	45744936	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SACM1L	NM_014016	exon2	c.C39A	p.I13I	.	.	34	4	40	0	.	91
SAMD11	148398	bcgsc.ca	37	1	871222	871222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SAMD11	NM_152486	exon5	c.C376A	p.Q126K	.	.	54	4	110	0	.	90
SAMD3	154075	bcgsc.ca	37	6	130476025	130476025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SAMD3	NM_001017373	exon9	c.G968A	p.R323Q	.	.	143	6	149	0	.	91
SAMD8	142891	bcgsc.ca	37	10	76910814	76910814	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SAMD8	NM_144660	exon2	c.A528G	p.R176R	.	.	70	4	58	0	.	90
SAMHD1	25939	bcgsc.ca	37	20	35533860	35533860	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SAMHD1	NM_015474	exon12	c.A1317G	p.K439K	.	.	103	5	118	0	.	90
SASH1	23328	bcgsc.ca	37	6	148855921	148855921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SASH1	NM_015278	exon16	c.A1979G	p.E660G	.	.	89	5	120	0	.	90
SASS6	163786	bcgsc.ca	37	1	100571389	100571389	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SASS6	NM_194292	exon13	c.T1479C	p.S493S	.	.	85	4	94	0	.	70
SATB2	23314	bcgsc.ca	37	2	200233419	200233419	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SATB2	NM_015265	exon7	c.A609T	p.S203S	.	.	58	4	34	0	.	91
SCAF11	9169	bcgsc.ca	37	12	46321302	46321302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCAF11	NM_004719	exon11	c.C2182A	p.Q728K	.	.	94	5	98	0	.	93
SCAF4	57466	bcgsc.ca	37	21	33043765	33043765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCAF4	NM_020706	exon20	c.T3391C	p.S1131P	.	.	59	4	38	0	.	90
SCAP	22937	bcgsc.ca	37	3	47460271	47460271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCAP	NM_012235	exon14	c.A2003G	p.E668G	.	.	40	4	64	1	.	91
SCIN	85477	bcgsc.ca	37	7	12691520	12691520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	SCIN,NS,carcinoma,-1	SCIN	NM_001112706	exon15	c.A2014G	p.K672E	.	.	76	4	48	0	.	24
SCN11A	11280	bcgsc.ca	37	3	38936406	38936406	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCN11A	NM_014139	exon15	c.A2453G	p.E818G	.	.	78	4	68	0	.	99
SCN11A	11280	bcgsc.ca	37	3	38941497	38941497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCN11A	NM_014139	exon13	c.T1910C	p.F637S	.	.	54	4	62	0	.	99
SCN3A	6328	bcgsc.ca	37	2	165947623	165947623	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCN3A	NM_006922	exon28	c.T5040A	p.V1680V	.	.	167	6	121	0	.	141
SCN3A	6328	bcgsc.ca	37	2	165969451	165969451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCN3A	NM_006922	exon21	c.G3787A	p.G1263R	.	.	68	4	31	0	.	141
SCN3A	6328	bcgsc.ca	37	2	165984501	165984501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCN3A	NM_006922	exon18	c.G3033A	p.M1011I	.	.	119	6	62	0	.	141
SCP2	6342	bcgsc.ca	37	1	53493687	53493687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCP2	NM_002979	exon13	c.A1282G	p.S428G	.	.	80	5	83	0	.	153
SCYL2	55681	bcgsc.ca	37	12	100717334	100717334	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SCYL2	NM_017988	exon11	c.C1427T	p.A476V	.	.	52	4	52	0	.	336
SDAD1	55153	bcgsc.ca	37	4	76902575	76902575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SDAD1	NM_018115	exon3	c.A244G	p.K82E	.	.	78	5	78	0	.	91
SDHAF2	54949	bcgsc.ca	37	11	61205121	61205121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SDHAF2	NM_017841	exon2	c.C61A	p.L21I	.	.	148	6	173	0	.	92
SEC14L3	266629	ucsc.edu;bcgsc.ca	37	22	30860870	30860870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC14L3	NM_174975	exon8	c.G601A	p.G201S	.	.	56	5	88	0	.	95
SEC24C	9632	bcgsc.ca	37	10	75529157	75529157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC24C	NM_004922	exon19	c.A2477G	p.N826S	.	.	64	4	69	0	.	92
SEC31A	22872	bcgsc.ca	37	4	83785649	83785649	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC31A	NM_001077206	exon11	c.A1300G	p.T434A	.	.	129	5	114	0	.	268
SEC31A	22872	bcgsc.ca	37	4	83800005	83800005	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEC31A	NM_001077206	exon4	c.G280A	p.E94K	.	.	65	4	59	0	.	268
SEMA3D	223117	bcgsc.ca	37	7	84685077	84685077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEMA3D	NM_152754	exon7	c.A817G	p.T273A	.	.	53	4	35	0	.	138
SEMA6D	80031	bcgsc.ca	37	15	48053884	48053884	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEMA6D	NM_153617	exon7	c.A474G	p.E158E	.	.	152	5	116	0	.	138
SEMG1	6406	broad.mit.edu;bcgsc.ca	37	20	43837123	43837123	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEMG1	NM_003007	exon2	c.A1185G	p.Q395Q	.	.	66	4	62	0	.	92
SENP2	59343	bcgsc.ca	37	3	185347615	185347615	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SENP2	NM_021627	exon17	c.C1753A	p.H585N	.	.	62	4	49	0	.	658
SENP6	26054	bcgsc.ca	37	6	76344455	76344455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SENP6	NM_001100409	exon5	c.G386A	p.G129E	.	.	51	4	39	0	.	660
SEPT8	23176	bcgsc.ca	37	5	132094238	132094238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SEPT8	NM_001098812	exon10	c.T1297C	p.W433R	.	.	74	4	91	0	.	70
SETD1A	9739	bcgsc.ca	37	16	30970196	30970196	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SETD1A	NM_014712	exon2	c.T144C	p.S48S	.	.	51	4	40	0	.	93
SETD1A	9739	ucsc.edu;bcgsc.ca	37	16	30976519	30976519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SETD1A	NM_014712	exon7	c.A1456G	p.S486G	.	.	50	4	42	0	.	93
SF1	7536	ucsc.edu	37	11	64537508	64537508	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SF1	NM_001178030	exon5	c.T782A	p.V261E	.	.	45	4	50	1	.	227
SGTB	54557	bcgsc.ca	37	5	65016545	65016545	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SGTB	NM_019072	exon2	c.A90G	p.E30E	.	.	74	4	36	0	.	90
SH3TC2	79628	bcgsc.ca	37	5	148407146	148407146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SH3TC2	NM_024577	exon11	c.A2149G	p.N717D	.	.	55	4	71	0	.	92
SH3TC2	79628	bcgsc.ca	37	5	148424171	148424171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SH3TC2	NM_024577	exon4	c.T310C	p.S104P	.	.	81	4	42	0	.	92
SHANK2	22941	bcgsc.ca	37	11	70805634	70805634	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHANK2	.	.	.	.	.	.	63	4	81	0	.	94
SHC1	6464	ucsc.edu;bcgsc.ca	37	1	154938479	154938479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHC1	NM_001130040	exon10	c.G1330A	p.A444T	.	.	49	4	36	0	.	847
SHCBP1	79801	bcgsc.ca	37	16	46637534	46637534	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHCBP1	NM_024745	exon8	c.T1130C	p.F377S	.	.	75	4	87	0	.	154
SHPK	23729	bcgsc.ca	37	17	3514071	3514071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SHPK	NM_013276	exon7	c.T1220C	p.V407A	.	.	25	4	32	0	.	69
SIDT2	51092	bcgsc.ca	37	11	117053269	117053269	+	Missense_Mutation	SNP	C	C	T	rs137918918	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIDT2	NM_001040455	exon5	c.C551T	p.S184L	.	.	57	4	59	0	C|0.998;T|0.002	90
SIDT2	51092	bcgsc.ca	37	11	117056870	117056870	+	Missense_Mutation	SNP	T	T	C	rs202022395		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIDT2	NM_001040455	exon9	c.T893C	p.L298P	.	.	150	5	230	1	T|0.999;C|0.001	90
SIGLEC7	27036	bcgsc.ca	37	19	51645921	51645921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIGLEC7	NM_016543	exon1	c.G295A	p.G99R	.	.	73	5	63	0	.	153
SIK1	150094	bcgsc.ca	37	21	44839860	44839860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIK1	NM_173354	exon9	c.A998G	p.H333R	.	.	72	4	62	0	.	346
SIRPA	140885	bcgsc.ca	37	20	1895859	1895859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIRPA	NM_001040022	exon3	c.C194T	p.P65L	.	.	140	5	185	1	.	227
SIX2	10736	bcgsc.ca	37	2	45236011	45236011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIX2	NM_016932	exon1	c.A239G	p.H80R	.	.	56	4	70	0	.	91
SIX4	51804	ucsc.edu	37	14	61180773	61180773	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SIX4	NM_017420	exon3	c.T1698C	p.S566S	.	.	42	4	24	0	.	154
SKA2	348235	bcgsc.ca	37	17	57208705	57208705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001100595	exon2	c.G152T	p.W51L	.	.	126	6	130	0	.	.
SKIV2L2	23517	bcgsc.ca	37	5	54693318	54693318	+	Silent	SNP	G	G	T	rs149072703	byfrequency;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SKIV2L2	NM_015360	exon20	c.G2256T	p.P752P	.	.	70	4	47	0	G|1.000;A|0.000	92
SKIV2L	6499	bcgsc.ca	37	6	31935081	31935081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SKIV2L	NM_006929	exon21	c.A2510G	p.K837R	.	.	64	4	59	0	.	290
SLC10A4	201780	bcgsc.ca	37	4	48487109	48487109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC10A4	NM_152679	exon2	c.G751A	p.G251S	.	.	99	5	112	0	.	90
SLC12A4	6560	bcgsc.ca	37	16	67979371	67979371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC12A4	NM_001145962	exon21	c.A2939G	p.D980G	.	.	57	4	82	1	.	91
SLC12A8	84561	bcgsc.ca	37	3	124896755	124896755	+	Missense_Mutation	SNP	C	C	A	rs200031423	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC12A8	NM_024628	exon5	c.G454T	p.G152W	.	.	57	4	73	0	.	22
SLC12A9	56996	bcgsc.ca	37	7	100454688	100454688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC12A9	NM_001267812	exon5	c.C647T	p.P216L	.	.	64	4	58	0	.	90
SLC16A2	6567	bcgsc.ca	37	X	73751250	73751250	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC16A2	NM_006517	exon6	c.C1482A	p.L494L	.	.	73	4	77	0	.	194
SLC20A1	6574	bcgsc.ca	37	2	113405041	113405041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC20A1	NM_005415	exon3	c.G475T	p.V159L	.	.	124	7	135	2	.	92
SLC22A16	85413	bcgsc.ca	37	6	110763634	110763634	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC22A16	NM_033125	exon4	c.T996C	p.G332G	.	.	53	4	60	0	.	91
SLC24A2	25769	ucsc.edu	37	9	19786821	19786821	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC24A2	NM_001193288	exon1	c.G44A	p.W15X	.	.	41	4	47	0	.	517
SLC24A4	123041	bcgsc.ca	37	14	92915440	92915440	+	Missense_Mutation	SNP	T	T	C	rs149544741	byfrequency	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC24A4	NM_153646	exon10	c.T760C	p.F254L	.	.	60	4	56	0	T|0.999;C|0.001	93
SLC24A5	283652	bcgsc.ca	37	15	48429103	48429103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC24A5	NM_205850	exon6	c.G814T	p.D272Y	.	.	64	4	30	0	.	90
SLC25A28	81894	bcgsc.ca	37	10	101373466	101373466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC25A28	NM_031212	exon2	c.C507A	p.S169R	.	.	30	4	30	0	.	90
SLC25A37	51312	ucsc.edu;bcgsc.ca	37	8	23425873	23425873	+	Missense_Mutation	SNP	G	G	A	rs147621958		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC25A37	NM_016612	exon3	c.G478A	p.V160I	.	.	41	4	40	0	G|0.999;A|0.000	90
SLC2A9	56606	bcgsc.ca	37	4	10022958	10022958	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC2A9	NM_020041	exon1	c.A96G	p.A32A	.	.	105	5	132	0	.	93
SLC30A3	7781	ucsc.edu	37	2	27480784	27480784	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC30A3	NM_003459	exon4	c.T567A	p.C189X	.	.	36	4	36	0	.	90
SLC30A8	169026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118170071	118170071	+	Missense_Mutation	SNP	C	C	T	rs141202988		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	SLC30A8,NS,carcinoma,0	SLC30A8	NM_173851	exon4	c.C560T	p.A187V	.	.	101	65	88	0	C|1.000;T|0.000	229
SLC34A1	6569	ucsc.edu	37	5	176823789	176823789	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC34A1	NM_003052	exon11	c.C1230T	p.A410A	.	.	65	7	71	1	.	91
SLC35A3	23443	bcgsc.ca	37	1	100472703	100472703	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC35A3	NM_001271685	exon4	c.T582C	p.A194A	.	.	63	4	59	0	.	90
SLC39A7	7922	bcgsc.ca	37	6	33169170	33169170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC39A7	NM_006979	exon1	c.T148C	p.S50P	.	.	47	4	49	0	.	67
SLC41A3	54946	bcgsc.ca	37	3	125725338	125725338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC41A3	NM_001008485	exon12	c.T1436A	p.I479K	.	.	74	4	78	0	.	90
SLC44A3	126969	bcgsc.ca	37	1	95286596	95286596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC44A3	NM_001114106	exon2	c.T119C	p.L40P	.	.	171	7	327	1	.	91
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95293104	95293104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC44A3	NM_001114106	exon4	c.G320A	p.G107D	.	.	44	4	52	0	.	91
SLC45A3	85414	bcgsc.ca	37	1	205628410	205628410	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC45A3	NM_033102	exon5	c.T1614C	p.A538A	.	.	68	5	65	0	.	98
SLC45A4	57210	bcgsc.ca	37	8	142238335	142238335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC45A4	NM_001080431	exon1	c.T31C	p.S11P	.	.	74	5	91	0	.	70
SLC4A8	9498	ucsc.edu;bcgsc.ca	37	12	51868218	51868218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC4A8	NM_001039960	exon15	c.A1997G	p.N666S	.	.	48	4	30	0	.	95
SLC4A9	83697	bcgsc.ca	37	5	139743976	139743976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC4A9	NM_001258428	exon11	c.C1489T	p.R497C	.	.	68	4	67	0	.	67
SLC5A10	125206	bcgsc.ca	37	17	18855581	18855581	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC5A10	NM_001042450	exon1	c.C63T	p.I21I	.	.	75	5	105	1	.	91
SLC5A8	160728	bcgsc.ca	37	12	101560335	101560335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC5A8	NM_145913	exon12	c.A1463G	p.N488S	.	.	89	4	90	0	.	90
SLC6A15	55117	bcgsc.ca	37	12	85255684	85255684	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC6A15	NM_182767	exon12	c.T1920C	p.R640R	.	.	61	4	51	0	.	93
SLC6A4	6532	ucsc.edu;bcgsc.ca	37	17	28543143	28543143	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC6A4	NM_001045	exon7	c.T929C	p.L310P	.	.	28	4	30	0	.	94
SLC7A6OS	84138	bcgsc.ca	37	16	68336288	68336288	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC7A6OS	NM_032178	exon4	c.C795T	p.S265S	.	.	81	4	84	0	.	91
SLC8A2	6543	bcgsc.ca	37	19	47969109	47969109	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC8A2	NM_015063	exon2	c.C552T	p.I184I	.	.	52	4	49	0	.	94
SLC9A1	6548	bcgsc.ca	37	1	27428248	27428248	+	Silent	SNP	G	G	T	rs137936112	alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC9A1	NM_003047	exon10	c.C2005A	p.R669R	.	.	42	4	60	0	G|1.000;A|0.000	91
SLC9A7	84679	bcgsc.ca	37	X	46541880	46541880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC9A7	NM_001257291	exon2	c.T416C	p.F139S	.	.	62	4	42	0	.	132
SLC9A8	23315	bcgsc.ca	37	20	48467312	48467312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLC9A8	NM_001260491	exon7	c.T548C	p.V183A	.	.	39	4	34	0	.	91
SLCO1B3	28234	bcgsc.ca	37	12	21032423	21032423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLCO1B3	NM_019844	exon11	c.A1189G	p.I397V	.	.	206	7	182	1	.	155
SLCO1B7	338821	bcgsc.ca	37	12	21229445	21229445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001009562	exon12	c.T1666C	p.S556P	.	.	89	5	77	0	.	.
SLFN12L	100506736	bcgsc.ca	37	17	33807171	33807171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLFN12L	NM_001195790	exon2	c.A58G	p.N20D	.	.	84	4	60	0	.	23
SLFN14	342618	bcgsc.ca	37	17	33875985	33875985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLFN14	NM_001129820	exon4	c.A2012G	p.Y671C	.	.	87	4	90	0	.	1
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20611768	20611768	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLIT2	NM_004787	exon34	c.T3825C	p.F1275F	.	.	43	4	48	0	.	521
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164906098	164906098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.C2521A	p.P841T	.	.	46	4	37	0	.	100
SLITRK3	22865	ucsc.edu;bcgsc.ca	37	3	164908427	164908427	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SLITRK3	NM_014926	exon2	c.A192G	p.K64K	.	.	52	6	51	0	.	100
SMAD9	4093	ucsc.edu;bcgsc.ca	37	13	37453767	37453767	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMAD9	NM_005905	exon2	c.A60G	p.R20R	.	.	48	4	92	0	.	414
SMARCA2	6595	ucsc.edu	37	9	2123823	2123823	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMARCA2	NM_139045	exon27	c.T3867C	p.A1289A	.	.	36	4	34	0	.	653
SMC1B	27127	bcgsc.ca	37	22	45741452	45741452	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMC1B	NM_148674	exon25	c.3496-2A>G	.	.	.	61	4	68	0	.	229
SMC3	9126	bcgsc.ca	37	10	112350855	112350855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMC3	NM_005445	exon17	c.T1777C	p.L593L	.	.	64	4	97	0	.	92
SMC4	10051	bcgsc.ca	37	3	160131331	160131331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMC4	NM_005496	exon7	c.A1051G	p.I351V	.	.	197	6	315	0	.	291
SMG1	23049	bcgsc.ca	37	16	18846315	18846315	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMG1	NM_015092	exon49	c.A8229G	p.K2743K	.	.	85	4	76	0	.	1160
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203159	2203159	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMG6	NM_017575	exon2	c.G888T	p.V296V	.	.	65	19	56	0	.	228
SMOX	54498	ucsc.edu;bcgsc.ca	37	20	4164179	4164179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMOX	NM_175839	exon6	c.T1408C	p.S470P	.	.	29	4	48	0	.	153
SMPDL3A	10924	bcgsc.ca	37	6	123122505	123122505	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMPDL3A	NM_006714	exon4	c.C522A	p.L174L	.	.	55	4	77	0	.	90
SMYD3	64754	bcgsc.ca	37	1	245912957	245912957	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SMYD3	NM_001167740	exon12	c.A1195T	p.I399F	.	.	62	6	55	0	.	226
SNRNP200	23020	bcgsc.ca	37	2	96943545	96943545	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNRNP200	NM_014014	exon40	c.G5754T	p.K1918N	.	.	75	5	73	1	.	162
SNTG2	54221	bcgsc.ca	37	2	1133452	1133452	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNTG2	NM_018968	exon6	c.370-2A>G	.	.	.	134	5	157	1	.	136
SNX17	9784	ucsc.edu	37	2	27598456	27598456	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX17	NM_014748	exon10	c.T858C	p.C286C	.	.	52	5	26	0	.	651
SNX18	112574	ucsc.edu;bcgsc.ca	37	5	53814671	53814671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX18	NM_052870	exon1	c.T889C	p.S297P	.	.	40	4	47	0	.	226
SNX21	90203	bcgsc.ca	37	20	44462571	44462571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX21	NM_033421	exon1	c.A13G	p.T5A	.	.	22	4	39	1	.	290
SNX22	79856	bcgsc.ca	37	15	64446664	64446664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SNX22	NM_024798	exon7	c.C539T	p.P180L	.	.	65	4	56	0	.	226
SOCS2	8835	bcgsc.ca	37	12	93968616	93968616	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SOCS2	NM_001270470	exon3	c.T258A	p.V86V	.	.	72	4	77	0	.	658
SOS1	6654	bcgsc.ca	37	2	39250076	39250076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SOS1	NM_005633	exon10	c.A1493G	p.K498R	.	.	83	6	53	0	.	851
SP5	389058	ucsc.edu;bcgsc.ca	37	2	171573770	171573770	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SP5	NM_001003845	exon2	c.G1053A	p.T351T	.	.	39	5	36	0	.	90
SPAG9	9043	bcgsc.ca	37	17	49091639	49091639	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPAG9	NM_001130528	exon9	c.T1167C	p.A389A	.	.	83	4	83	0	.	659
SPATA20	64847	ucsc.edu;bcgsc.ca	37	17	48625120	48625120	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA20	NM_022827	exon2	c.T117C	p.S39S	.	.	46	4	81	0	.	90
SPATA2L	124044	ucsc.edu;bcgsc.ca	37	16	89764258	89764258	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPATA2L	NM_152339	exon3	c.C759T	p.P253P	.	.	24	4	26	0	.	90
SPATA31D1	389763	ucsc.edu	37	9	84608861	84608861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001001670	exon4	c.A3476G	p.N1159S	.	.	38	4	57	1	.	.
SPHK2	56848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49131441	49131441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPHK2	NM_020126	exon6	c.G779A	p.R260H	.	.	26	8	37	0	.	658
SPHKAP	80309	bcgsc.ca	37	2	228890234	228890234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPHKAP	NM_030623	exon5	c.A317G	p.N106S	.	.	97	5	94	0	.	167
SPICE1	152185	bcgsc.ca	37	3	113166916	113166916	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPICE1	NM_144718	exon16	c.G2395A	p.V799I	.	.	70	4	50	0	.	70
SPIN1	10927	bcgsc.ca	37	9	91083455	91083455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPIN1	NM_006717	exon5	c.T524C	p.V175A	.	.	72	4	123	0	.	44
SPINK5	11005	bcgsc.ca	37	5	147498558	147498558	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPINK5	NM_001127699	exon24	c.A2250G	p.E750E	.	.	123	5	122	0	.	138
SPOCK2	9806	ucsc.edu;bcgsc.ca	37	10	73831975	73831975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPOCK2	NM_014767	exon5	c.A286T	p.S96C	.	.	45	5	64	1	.	90
SPOCK3	50859	bcgsc.ca	37	4	167983684	167983684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPOCK3	NM_016950	exon4	c.A203G	p.D68G	.	.	87	4	52	0	.	136
SPPL2A	84888	bcgsc.ca	37	15	51028906	51028906	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPPL2A	NM_032802	exon7	c.A765G	p.A255A	.	.	101	5	72	0	.	90
SPPL2A	84888	bcgsc.ca	37	15	51031997	51031997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPPL2A	NM_032802	exon6	c.G613A	p.D205N	.	.	86	4	76	0	.	90
SPPL2B	56928	bcgsc.ca	37	19	2344378	2344378	+	RNA	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	.	.	.	36	4	50	0	.	.
SPTBN2	6712	ucsc.edu;bcgsc.ca	37	11	66482855	66482855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN2	NM_006946	exon4	c.A321G	p.T107T	.	.	42	4	51	0	.	155
SPTBN5	51332	bcgsc.ca	37	15	42172054	42172054	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN5	NM_016642	exon15	c.C2715A	p.L905L	.	.	65	4	74	0	.	91
SPTBN5	51332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42182309	42182309	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTBN5	NM_016642	exon4	c.T374C	p.I125T	.	.	60	7	61	0	.	91
SPTY2D1	144108	bcgsc.ca	37	11	18633877	18633877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SPTY2D1	NM_194285	exon4	c.G1870A	p.G624S	.	.	75	4	84	0	.	90
SQSTM1	8878	bcgsc.ca	37	5	179263583	179263583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SQSTM1	NM_003900	exon8	c.C1313A	p.P438Q	.	.	56	4	50	0	.	92
SRCAP	10847	bcgsc.ca	37	16	30724875	30724875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SRCAP	NM_006662	exon16	c.A2336G	p.Q779R	.	.	88	5	50	0	.	94
SREBF2	6721	bcgsc.ca	37	22	42294682	42294682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SREBF2	NM_004599	exon15	c.T2635C	p.S879P	.	.	118	5	191	0	.	154
SRI	6717	bcgsc.ca	37	7	87837875	87837875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SRI	NM_001256891	exon7	c.T517C	p.F173L	.	.	82	4	74	0	.	515
SRMS	6725	bcgsc.ca	37	20	62173913	62173913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SRMS	NM_080823	exon4	c.T667C	p.W223R	.	.	41	4	53	0	.	521
SRPK3	26576	bcgsc.ca	37	X	153050428	153050428	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SRPK3	NM_014370	exon13	c.C1396T	p.H466Y	.	.	66	4	98	0	.	540
SRSF5	6430	bcgsc.ca	37	14	70237936	70237936	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SRSF5	NM_001039465	exon8	c.C577A	p.R193R	.	.	54	5	60	0	.	226
SS18	6760	bcgsc.ca	37	18	23658041	23658041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SS18	NM_001007559	exon3	c.C230A	p.A77E	.	.	73	5	66	0	.	1968
ST6GAL2	84620	bcgsc.ca	37	2	107446614	107446614	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ST6GAL2	NM_032528	exon5	c.T1226C	p.L409P	.	.	95	4	59	0	.	191
ST8SIA3	51046	ucsc.edu;bcgsc.ca	37	18	55024608	55024608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ST8SIA3	NM_015879	exon3	c.T767C	p.V256A	.	.	50	4	42	0	.	136
STAG1	10274	bcgsc.ca	37	3	136117628	136117628	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STAG1	NM_005862	exon22	c.G2240T	p.W747L	.	.	64	5	95	0	.	228
STAP1	26228	bcgsc.ca	37	4	68447076	68447076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STAP1	NM_012108	exon5	c.T417A	p.H139Q	.	.	87	4	79	0	.	68
STARD8	9754	bcgsc.ca	37	X	67940845	67940845	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STARD8	NM_001142503	exon9	c.T2129C	p.V710A	.	.	67	4	75	0	.	196
STAT1	6772	bcgsc.ca	37	2	191843697	191843697	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STAT1	NM_007315	exon21	c.A1758G	p.R586R	.	.	46	4	27	0	.	1335
STAT1	6772	bcgsc.ca	37	2	191843704	191843704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STAT1	NM_007315	exon21	c.A1751G	p.K584R	.	.	46	4	26	0	.	1335
STAT6	6778	bcgsc.ca	37	12	57496236	57496236	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STAT6	NM_001178079	exon13	c.A1349G	p.K450R	.	.	39	4	44	0	.	849
STEAP1B	256227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22533059	22533059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001164460	exon3	c.A481G	p.R161G	.	.	179	71	149	1	.	.
STK31	56164	bcgsc.ca	37	7	23793941	23793941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STK31	NM_031414	exon10	c.G1141T	p.D381Y	.	.	149	6	134	0	.	338
STK32B	55351	bcgsc.ca	37	4	5053617	5053617	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STK32B	NM_018401	exon1	c.C27T	p.P9P	.	.	48	5	58	0	.	1002
STK32B	55351	bcgsc.ca	37	4	5500723	5500723	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STK32B	NM_018401	exon12	c.A1158G	p.R386R	.	.	87	5	104	1	.	1002
STK3	6788	bcgsc.ca	37	8	99560209	99560209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STK3	NM_001256312	exon11	c.G1213A	p.G405R	.	.	70	4	39	0	.	978
STK4	6789	bcgsc.ca	37	20	43703665	43703665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STK4	NM_006282	exon11	c.A1312G	p.S438G	.	.	46	4	40	0	.	767
STOM	2040	bcgsc.ca	37	9	124103522	124103522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STOM	NM_004099	exon7	c.G825T	p.M275I	.	.	56	4	54	0	.	90
STRA8	346673	bcgsc.ca	37	7	134928104	134928104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STRA8	NM_182489	exon4	c.G361A	p.A121T	.	.	74	4	53	0	.	68
STX19	415117	bcgsc.ca	37	3	93733486	93733486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STX19	NM_001001850	exon2	c.T628C	p.S210P	.	.	71	5	86	0	.	90
STX19	415117	bcgsc.ca	37	3	93733539	93733539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STX19	NM_001001850	exon2	c.A575G	p.E192G	.	.	67	4	89	0	.	90
STX4	6810	bcgsc.ca	37	16	31049903	31049903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STX4	NM_004604	exon8	c.C637A	p.L213I	.	.	52	4	38	0	.	90
STXBP3	6814	bcgsc.ca	37	1	109325274	109325274	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP3	NM_007269	exon11	c.A909G	p.E303E	.	.	146	5	171	0	.	93
STXBP5L	9515	bcgsc.ca	37	3	120876372	120876372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP5L	NM_014980	exon9	c.C775A	p.H259N	.	.	81	4	65	1	.	77
STXBP5L	9515	bcgsc.ca	37	3	121037326	121037326	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP5L	NM_014980	exon21	c.A2187T	p.L729F	.	.	165	7	182	1	.	77
STXBP6	29091	broad.mit.edu;bcgsc.ca	37	14	25281918	25281918	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	STXBP6	NM_014178	exon6	c.T630C	p.C210C	.	.	51	6	42	1	.	90
SUGP2	10147	ucsc.edu	37	19	19105981	19105981	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SUGP2	NM_014884	exon9	c.G3100T	p.G1034X	.	.	44	4	45	0	.	91
SWT1	54823	bcgsc.ca	37	1	185171909	185171909	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SWT1	NM_017673	exon11	c.T1647C	p.I549I	.	.	73	4	71	0	.	91
SYCP1	6847	bcgsc.ca	37	1	115399248	115399248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYCP1	NM_003176	exon3	c.C163A	p.L55I	.	.	118	6	132	0	.	91
SYNE1	23345	bcgsc.ca	37	6	152754962	152754962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYNE1	NM_033071	exon34	c.T4450C	p.S1484P	.	.	65	4	72	0	.	607
SYNE2	23224	bcgsc.ca	37	14	64686112	64686112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYNE2	NM_182914	exon110	c.G19844T	p.R6615I	.	.	98	4	93	1	.	164
SYNGAP1	8831	bcgsc.ca	37	6	33406055	33406055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYNGAP1	NM_006772	exon8	c.C1373T	p.T458I	.	.	86	4	123	0	.	48
SYNPO2L	79933	ucsc.edu	37	10	75408481	75408481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYNPO2L	NM_001114133	exon4	c.T929C	p.L310P	.	.	44	4	69	2	.	91
SYPL1	6856	bcgsc.ca	37	7	105733514	105733514	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYPL1	NM_006754	exon5	c.A526G	p.T176A	.	.	65	5	61	0	.	90
SYTL4	94121	bcgsc.ca	37	X	99944892	99944892	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	SYTL4	NM_001129896	exon10	c.A873G	p.G291G	.	.	120	5	130	0	.	132
TADA2A	6871	bcgsc.ca	37	17	35802676	35802676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TADA2A	NM_001488	exon7	c.C454T	p.P152S	.	.	76	4	91	0	.	230
TAF1	6872	bcgsc.ca	37	X	70587920	70587920	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAF1	NM_004606	exon3	c.A312G	p.T104T	.	.	91	4	85	0	.	900
TAF1L	138474	bcgsc.ca	37	9	32632016	32632016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAF1L	NM_153809	exon1	c.C3562T	p.R1188C	.	.	80	4	115	0	.	870
TARSL2	123283	bcgsc.ca	37	15	102211697	102211697	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TARSL2	NM_152334	exon15	c.A1959G	p.T653T	.	.	140	5	75	0	.	92
TAS2R16	50833	ucsc.edu;bcgsc.ca	37	7	122634852	122634852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R16	NM_016945	exon1	c.C837A	p.S279R	.	.	43	4	31	0	.	92
TAS2R19	259294	bcgsc.ca	37	12	11174411	11174411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R19	NM_176888	exon1	c.A760G	p.T254A	.	.	133	7	67	0	.	91
TAS2R19	259294	bcgsc.ca	37	12	11174606	11174606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TAS2R19	NM_176888	exon1	c.A565G	p.T189A	.	.	153	6	142	1	.	91
TAS2R30	259293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	11286203	11286203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001097643	exon1	c.A641T	p.K214I	.	.	205	22	131	0	.	.
TBC1D14	57533	bcgsc.ca	37	4	7000824	7000824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBC1D14	NM_001113361	exon6	c.C1058T	p.A353V	.	.	59	4	48	0	.	92
TBC1D15	64786	bcgsc.ca	37	12	72288117	72288117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBC1D15	NM_022771	exon7	c.G670T	p.D224Y	.	.	173	6	142	0	.	90
TBC1D15	64786	bcgsc.ca	37	12	72307690	72307690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBC1D15	NM_022771	exon13	c.C1436A	p.S479Y	.	.	71	4	60	0	.	90
TBC1D22B	55633	bcgsc.ca	37	6	37247153	37247153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBC1D22B	NM_017772	exon3	c.G187T	p.A63S	.	.	58	5	35	0	.	90
TBC1D8	11138	bcgsc.ca	37	2	101656680	101656680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBC1D8	NM_001102426	exon6	c.G995T	p.R332I	.	.	50	4	40	0	.	25
TBCCD1	55171	bcgsc.ca	37	3	186274369	186274369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TBCCD1	NM_001134415	exon4	c.C688T	p.H230Y	.	.	76	5	61	0	.	108
TCEA3	6920	bcgsc.ca	37	1	23724075	23724075	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_003196	exon7	c.A627G	p.G209G	.	.	112	5	111	0	.	.
TCHHL1	126637	bcgsc.ca	37	1	152059801	152059801	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TCHHL1	NM_001008536	exon3	c.T357A	p.G119G	.	.	65	4	68	0	.	92
TDRD1	56165	bcgsc.ca	37	10	115947860	115947860	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TDRD1	NM_198795	exon2	c.T270C	p.N90N	.	.	82	4	95	0	.	90
TDRD3	81550	bcgsc.ca	37	13	61034596	61034596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TDRD3	NM_001146070	exon4	c.C275T	p.P92L	.	.	55	4	65	0	.	516
TEK	7010	bcgsc.ca	37	9	27180291	27180291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TEK	NM_000459	exon7	c.A955G	p.N319D	.	.	79	5	100	1	.	1584
TENM1	10178	ucsc.edu	37	X	123526195	123526195	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001163278	exon28	c.C5395T	p.H1799Y	.	.	44	4	50	1	.	.
TENM1	10178	bcgsc.ca	37	X	123615769	123615769	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001163278	exon22	c.T3762C	p.S1254S	.	.	139	5	173	0	.	.
TENM3	55714	bcgsc.ca	37	4	183601728	183601728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080477	exon9	c.C1672A	p.Q558K	.	.	57	4	51	0	.	.
TENM3	55714	bcgsc.ca	37	4	183659619	183659619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080477	exon17	c.C3301A	p.L1101M	.	.	93	4	130	0	.	.
TENM4	26011	ucsc.edu;bcgsc.ca	37	11	78369384	78369384	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001098816	exon34	c.A8029T	p.T2677S	.	.	55	5	67	0	.	.
TES	26136	bcgsc.ca	37	7	115890373	115890373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TES	NM_015641	exon4	c.G525A	p.M175I	.	.	82	4	70	0	.	514
TET2	54790	bcgsc.ca	37	4	106156573	106156573	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TET2	NM_001127208	exon3	c.A1474T	p.T492S	.	.	72	4	90	0	.	4618
TEX14	56155	bcgsc.ca	37	17	56676831	56676831	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TEX14	NM_001201457	exon14	c.C1893A	p.I631I	.	.	50	4	49	0	.	810
TGFB1I1	7041	bcgsc.ca	37	16	31485480	31485480	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TGFB1I1	NM_001042454	exon5	c.C333A	p.I111I	.	.	92	4	89	0	.	90
TGFBR2	7048	bcgsc.ca	37	3	30691833	30691833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TGFBR2	NM_001024847	exon4	c.T410C	p.I137T	.	.	54	4	68	0	.	1698
TGFBRAP1	9392	bcgsc.ca	37	2	105912870	105912870	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TGFBRAP1	NM_004257	exon4	c.A981G	p.E327E	.	.	71	5	77	0	.	91
TGS1	96764	bcgsc.ca	37	8	56702753	56702753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TGS1	NM_024831	exon5	c.C1175A	p.S392Y	.	.	40	4	32	0	.	227
TGS1	96764	bcgsc.ca	37	8	56708689	56708689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TGS1	NM_024831	exon7	c.A1520G	p.K507R	.	.	84	4	65	0	.	227
THAP1	55145	bcgsc.ca	37	8	42693145	42693145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THAP1	NM_018105	exon3	c.T602A	p.L201Q	.	.	57	4	73	0	.	90
THAP9	79725	bcgsc.ca	37	4	83839185	83839185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THAP9	NM_024672	exon5	c.T1820C	p.F607S	.	.	78	4	58	0	.	156
THBS3	7059	bcgsc.ca	37	1	155172070	155172070	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THBS3	NM_007112	exon9	c.T1080C	p.Y360Y	.	.	35	4	40	0	.	222
THEMIS	387357	ucsc.edu;bcgsc.ca	37	6	128134525	128134525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THEMIS	NM_001010923	exon4	c.T1261C	p.Y421H	.	.	31	4	48	0	.	94
THG1L	54974	bcgsc.ca	37	5	157158543	157158543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THG1L	NM_017872	exon1	c.A95G	p.K32R	.	.	63	5	58	0	.	90
THRA	7067	bcgsc.ca	37	17	38240873	38240873	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THRA	NM_001190918	exon6	c.T381C	p.D127D	.	.	63	4	66	0	.	186
THSD7B	80731	bcgsc.ca	37	2	137814160	137814160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THSD7B	.	.	.	.	.	.	83	5	63	0	.	75
THSD7B	80731	bcgsc.ca	37	2	137814219	137814219	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THSD7B	.	.	.	.	.	.	51	4	43	0	.	75
THSD7B	80731	bcgsc.ca	37	2	138163316	138163316	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THSD7B	.	.	.	.	.	.	67	4	48	0	.	75
THUMPD2	80745	bcgsc.ca	37	2	39995643	39995643	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	THUMPD2	NM_025264	exon5	c.673-2A>G	.	.	.	169	5	210	1	.	91
TICRR	90381	bcgsc.ca	37	15	90126056	90126056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_152259	exon2	c.A794G	p.K265R	.	.	111	5	103	0	.	.
TICRR	90381	bcgsc.ca	37	15	90167716	90167716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_152259	exon20	c.G4175A	p.R1392K	.	.	50	4	49	0	.	.
TIMELESS	8914	bcgsc.ca	37	12	56818866	56818866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TIMELESS	NM_003920	exon14	c.C1649A	p.P550Q	.	.	46	4	60	0	.	159
TIMM44	10469	bcgsc.ca	37	19	7998387	7998387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TIMM44	NM_006351	exon7	c.A752G	p.N251S	.	.	55	4	97	0	.	91
TKTL1	8277	bcgsc.ca	37	X	153541122	153541122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TKTL1	NM_012253	exon6	c.A862G	p.K288E	.	.	65	5	76	0	.	134
TKTL2	84076	bcgsc.ca	37	4	164394855	164394855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TKTL2	NM_032136	exon1	c.A32G	p.K11R	.	.	66	4	93	0	.	95
TLE3	7090	ucsc.edu;bcgsc.ca	37	15	70368485	70368485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TLE3	NM_001105192	exon5	c.A247G	p.K83E	.	.	45	4	37	0	.	522
TLN1	7094	bcgsc.ca	37	9	35716411	35716411	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TLN1	NM_006289	exon20	c.A2601T	p.T867T	.	.	57	4	100	0	.	609
TLR6	10333	bcgsc.ca	37	4	38830060	38830060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TLR6	NM_006068	exon2	c.C1035A	p.H345Q	.	.	36	4	34	0	.	524
TMC1	117531	bcgsc.ca	37	9	75315486	75315486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC1	NM_138691	exon8	c.G289T	p.D97Y	.	.	92	4	114	0	.	91
TMC1	117531	bcgsc.ca	37	9	75387438	75387438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC1	NM_138691	exon13	c.G851T	p.C284F	.	.	144	8	255	1	.	91
TMC5	79838	bcgsc.ca	37	16	19475247	19475247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC5	NM_001105249	exon8	c.C1386A	p.F462L	.	.	84	5	78	0	.	91
TMC7	79905	bcgsc.ca	37	16	19047121	19047121	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC7	NM_024847	exon7	c.C981T	p.H327H	.	.	87	6	50	0	.	93
TMC7	79905	ucsc.edu;bcgsc.ca	37	16	19070791	19070791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMC7	NM_024847	exon15	c.T2081C	p.I694T	.	.	43	5	27	0	.	93
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu	37	3	129389772	129389772	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.912delG	p.R304fs	.	.	141	11	155	0	.	91
TMCC1	23023	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	129389775	129389787	+	Frame_Shift_Del	DEL	GTGGTAGTGCTCA	GTGGTAGTGCTCA	-	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	GTGGTAGTGCTCA	GTGGTAGTGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMCC1	NM_001017395	exon4	c.897_909del	p.299_303del	.	.	138	11	156	0	.	91
TMEM116	89894	bcgsc.ca	37	12	112369508	112369508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM116	NM_001193531	exon11	c.T931C	p.S311P	.	.	91	4	56	0	.	69
TMEM131	23505	bcgsc.ca	37	2	98411458	98411458	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM131	NM_015348	exon29	c.T3321C	p.C1107C	.	.	89	4	48	1	.	74
TMEM131	23505	bcgsc.ca	37	2	98412799	98412799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM131	NM_015348	exon28	c.C3082A	p.Q1028K	.	.	202	8	201	0	.	74
TMEM132B	114795	bcgsc.ca	37	12	125900077	125900077	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM132B	NM_052907	exon3	c.A945G	p.R315R	.	.	80	4	54	1	.	185
TMEM133	83935	bcgsc.ca	37	11	100863222	100863222	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM133	NM_032021	exon1	c.A183G	p.T61T	.	.	75	4	60	0	.	90
TMEM147	10430	bcgsc.ca	37	19	36037614	36037614	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM147	NM_032635	exon4	c.G248A	p.G83D	.	.	72	4	51	0	.	90
TMEM156	80008	bcgsc.ca	37	4	39000362	39000362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM156	NM_024943	exon2	c.A256G	p.T86A	.	.	96	5	104	0	.	91
TMEM168	64418	bcgsc.ca	37	7	112424170	112424170	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM168	NM_022484	exon2	c.T711C	p.P237P	.	.	65	4	38	0	.	91
TMEM179	388021	bcgsc.ca	37	14	105070983	105070983	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM179	NM_207379	exon1	c.C96A	p.G32G	.	.	56	4	129	0	.	514
TMEM194B	100131211	bcgsc.ca	37	2	191383690	191383690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001142645	exon3	c.G433A	p.V145M	.	.	63	4	41	0	.	.
TMEM2	23670	bcgsc.ca	37	9	74327067	74327067	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM2	NM_013390	exon16	c.T2701C	p.F901L	.	.	86	4	142	1	.	92
TMEM234	56063	ucsc.edu;bcgsc.ca	37	1	32686739	32686739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMEM234	NM_019118	exon3	c.A228G	p.A76A	.	.	46	4	44	0	.	90
TMF1	7110	bcgsc.ca	37	3	69074746	69074746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMF1	NM_007114	exon15	c.C2977A	p.L993I	.	.	104	4	176	0	.	90
TMLHE	55217	bcgsc.ca	37	X	154736671	154736671	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMLHE	NM_001184797	exon6	c.G883T	p.V295L	.	.	126	6	117	1	.	131
TMPO	7112	bcgsc.ca	37	12	98941608	98941608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMPO	NM_001032283	exon9	c.T1337C	p.L446P	.	.	82	5	96	0	.	93
TMTC3	160418	bcgsc.ca	37	12	88588773	88588773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TMTC3	NM_181783	exon14	c.C2092A	p.Q698K	.	.	146	6	126	0	.	91
TNFRSF10C	8794	bcgsc.ca	37	8	22972259	22972259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNFRSF10C	NM_003841	exon3	c.T256C	p.F86L	.	.	84	4	126	1	.	651
TNFRSF14	8764	bcgsc.ca	37	1	2493124	2493124	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNFRSF14	NM_003820	exon6	c.G564T	p.L188L	.	.	22	3	31	0	.	227
TNIP3	79931	bcgsc.ca	37	4	122063906	122063906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNIP3	NM_001244764	exon11	c.A992G	p.E331G	.	.	73	4	75	0	.	91
TNK1	8711	ucsc.edu;bcgsc.ca	37	17	7291786	7291786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNK1	NM_001251902	exon11	c.A1554G	p.S518S	.	.	31	4	63	0	.	547
TNKS2	80351	bcgsc.ca	37	10	93582068	93582068	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNKS2	NM_025235	exon7	c.A744T	p.L248F	.	.	92	4	150	0	.	541
TNKS	8658	bcgsc.ca	37	8	9578023	9578023	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNKS	NM_003747	exon12	c.T1889C	p.M630T	.	.	61	5	51	0	.	660
TNN	63923	bcgsc.ca	37	1	175066656	175066656	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNN	NM_022093	exon8	c.C1692A	p.R564R	.	.	64	4	67	0	.	138
TNNI1	7135	ucsc.edu	37	1	201382231	201382231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNNI1	.	.	.	.	.	.	32	4	22	0	.	90
TNPO3	23534	bcgsc.ca	37	7	128637507	128637507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNPO3	NM_012470	exon8	c.T1094C	p.F365S	.	.	68	5	60	0	.	228
TNR	7143	bcgsc.ca	37	1	175304867	175304867	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNR	NM_003285	exon20	c.T3611C	p.V1204A	.	.	69	4	75	0	.	324
TNR	7143	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175372511	175372511	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TNR	NM_003285	exon4	c.C741T	p.D247D	.	.	42	15	37	0	.	324
TOP2A	7153	bcgsc.ca	37	17	38548567	38548567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TOP2A	NM_001067	exon31	c.G3991T	p.D1331Y	.	.	196	7	226	1	.	655
TOP2A	7153	bcgsc.ca	37	17	38555367	38555367	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TOP2A	NM_001067	exon25	c.A3213G	p.K1071K	.	.	61	4	59	0	.	655
TOPORS	10210	bcgsc.ca	37	9	32542921	32542921	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TOPORS	NM_005802	exon3	c.T1602C	p.S534S	.	.	80	4	78	0	.	230
TPBG	7162	bcgsc.ca	37	6	83075741	83075741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TPBG	NM_001166392	exon2	c.T1063C	p.S355P	.	.	82	4	153	0	.	514
TPMT	7172	bcgsc.ca	37	6	18149259	18149259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TPMT	NM_000367	exon2	c.G100A	p.V34M	.	.	74	4	99	0	.	90
TRANK1	9881	bcgsc.ca	37	3	36896688	36896688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRANK1	NM_014831	exon12	c.T4393A	p.Y1465N	.	.	91	5	105	0	.	24
TREH	11181	bcgsc.ca	37	11	118534105	118534105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TREH	.	.	.	.	.	.	62	4	58	0	.	46
TRERF1	55809	ucsc.edu;bcgsc.ca	37	6	42237051	42237051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRERF1	NM_033502	exon5	c.A278G	p.N93S	.	.	22	4	25	0	.	230
TRHDE	29953	bcgsc.ca	37	12	73046860	73046860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRHDE	NM_013381	exon17	c.C2773T	p.H925Y	.	.	84	4	76	0	.	93
TRIM22	10346	bcgsc.ca	37	11	5719657	5719657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIM22	NM_006074	exon4	c.A632G	p.N211S	.	.	74	4	79	0	.	90
TRIM23	373	bcgsc.ca	37	5	64900835	64900835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIM23	NM_033228	exon7	c.C1082T	p.T361I	.	.	71	4	74	0	.	230
TRIM31	11074	bcgsc.ca	37	6	30079430	30079430	+	Missense_Mutation	SNP	A	A	G	rs199773605		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIM31	NM_007028	exon3	c.T508C	p.F170L	.	.	138	6	165	0	A|0.999;G|0.001	658
TRIM69	140691	bcgsc.ca	37	15	45059876	45059876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIM69	NM_182985	exon7	c.A1409G	p.N470S	.	.	82	4	79	0	.	90
TRIP11	9321	bcgsc.ca	37	14	92480862	92480862	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIP11	NM_004239	exon7	c.C883A	p.Q295K	.	.	70	4	57	0	.	1400
TRIP11	9321	bcgsc.ca	37	14	92482105	92482105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRIP11	NM_004239	exon6	c.G758A	p.R253Q	.	.	127	6	120	0	.	1400
TRMT2B	79979	bcgsc.ca	37	X	100274369	100274369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRMT2B	NM_001167972	exon11	c.A1192T	p.T398S	.	.	71	4	74	0	.	131
TRMT61B	55006	bcgsc.ca	37	2	29087974	29087974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRMT61B	NM_017910	exon2	c.G711T	p.M237I	.	.	66	5	37	0	.	90
TRPC5	7224	bcgsc.ca	37	X	111155538	111155538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRPC5	NM_012471	exon3	c.T881C	p.I294T	.	.	61	4	72	0	.	130
TRPM1	4308	bcgsc.ca	37	15	31329997	31329997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRPM1	NM_001252020	exon19	c.C2539T	p.H847Y	.	.	92	6	89	0	.	94
TRPM3	80036	bcgsc.ca	37	9	73235255	73235255	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRPM3	NM_001007471	exon15	c.A1830G	p.R610R	.	.	88	4	118	1	.	521
TRPM7	54822	bcgsc.ca	37	15	50940975	50940975	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TRPM7	NM_017672	exon4	c.A230G	p.E77G	.	.	92	4	90	1	.	392
TSC22D3	1831	bcgsc.ca	37	X	107018455	107018455	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSC22D3	NM_198057	exon1	c.C195T	p.L65L	.	.	86	5	139	0	.	197
TSC22D3	1831	broad.mit.edu;bcgsc.ca	37	X	106959961	106959961	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSC22D3	NM_004089	exon1	c.T81A	p.S27S	.	.	34	8	87	0	.	197
TSC2	7249	bcgsc.ca	37	16	2098701	2098701	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSC2	NM_001114382	exon2	c.A85G	p.R29G	.	.	108	5	81	0	.	1908
TSGA10	80705	bcgsc.ca	37	2	99720429	99720429	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSGA10	NM_025244	exon11	c.611+1G>A	.	.	.	158	6	139	0	.	91
TSGA13	114960	bcgsc.ca	37	7	130368438	130368438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSGA13	NM_052933	exon3	c.C96A	p.S32R	.	.	155	6	142	0	.	92
TSHB	7252	bcgsc.ca	37	1	115576749	115576749	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSHB	NM_000549	exon3	c.C318A	p.G106G	.	.	98	5	112	0	.	226
TSNAXIP1	55815	bcgsc.ca	37	16	67859649	67859649	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSNAXIP1	NM_018430	exon8	c.A732G	p.E244E	.	.	62	4	57	0	.	90
TSPAN32	10077	bcgsc.ca	37	11	2335785	2335785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSPAN32	NM_139022	exon6	c.A527G	p.E176G	.	.	72	5	98	2	.	23
TSPEAR	54084	bcgsc.ca	37	21	45941937	45941937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSPEAR	NM_144991	exon9	c.C1395A	p.F465L	.	.	257	7	385	1	.	244
TSSC1	7260	bcgsc.ca	37	2	3358347	3358347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSSC1	NM_003310	exon2	c.A100G	p.T34A	.	.	147	6	141	1	.	90
TSTD2	158427	bcgsc.ca	37	9	100388116	100388116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TSTD2	NM_139246	exon3	c.C329A	p.S110Y	.	.	55	4	86	0	.	92
TTC12	54970	bcgsc.ca	37	11	113186996	113186996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTC12	NM_017868	exon2	c.A17G	p.E6G	.	.	87	5	105	0	.	93
TTC12	54970	bcgsc.ca	37	11	113233202	113233202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTC12	NM_017868	exon19	c.A1694G	p.K565R	.	.	78	4	62	0	.	93
TTC14	151613	bcgsc.ca	37	3	180320728	180320728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTC14	NM_001042601	exon2	c.A211G	p.K71E	.	.	54	4	62	0	.	91
TTC26	79989	bcgsc.ca	37	7	138853115	138853115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTC26	NM_001144920	exon11	c.A977G	p.N326S	.	.	74	4	61	0	.	91
TTC7A	57217	bcgsc.ca	37	2	47273523	47273523	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTC7A	NM_020458	exon16	c.A1872G	p.R624R	.	.	57	4	57	0	.	136
TTF1	7270	bcgsc.ca	37	9	135277916	135277916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTF1	NM_007344	exon2	c.A293G	p.E98G	.	.	91	4	138	0	.	94
TTLL4	9654	bcgsc.ca	37	2	219614042	219614042	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTLL4	NM_014640	exon14	c.C2667A	p.L889L	.	.	67	4	48	0	.	93
TTLL5	23093	ucsc.edu	37	14	76184246	76184246	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTLL5	NM_015072	exon10	c.G783T	p.R261R	.	.	38	4	25	0	.	92
TTN	7273	bcgsc.ca	37	2	179477055	179477055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon266	c.C50197A	p.Q16733K	.	.	91	4	79	0	.	636
TTN	7273	bcgsc.ca	37	2	179577825	179577825	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon93	c.T27036C	p.P9012P	.	.	86	4	70	0	.	636
TTN	7273	bcgsc.ca	37	2	179639661	179639661	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon29	c.A6777G	p.K2259K	.	.	49	4	50	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179430304	179430304	+	Missense_Mutation	SNP	C	C	T	rs202149931		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_001267550	exon326	c.G80555A	p.R26852H	.	.	97	26	70	0	C|0.999;T|0.001	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179610836	179610836	+	Missense_Mutation	SNP	C	C	T	rs141483365		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTN	NM_133379	exon46	c.G16291A	p.E5431K	.	.	101	23	91	0	C|1.000;T|0.000	636
TTPAL	79183	bcgsc.ca	37	20	43108645	43108645	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TTPAL	NM_001039199	exon2	c.C6A	p.S2S	.	.	38	4	35	0	.	153
TUBAL3	79861	ucsc.edu	37	10	5436425	5436425	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TUBAL3	NM_001171864	exon5	c.277-1G>T	.	.	.	20	4	10	0	.	91
TUBG1	7283	bcgsc.ca	37	17	40766935	40766935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TUBG1	NM_001070	exon11	c.A1232G	p.E411G	.	.	51	4	73	0	.	91
TULP1	7287	bcgsc.ca	37	6	35467926	35467926	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TULP1	NM_003322	exon14	c.A1327T	p.S443C	.	.	20	3	23	0	.	92
TVP23A	780776	ucsc.edu;bcgsc.ca	37	16	10912025	10912025	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001079512	exon2	c.T24C	p.D8D	.	.	17	4	18	0	.	.
TWISTNB	221830	ucsc.edu	37	7	19738308	19738308	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TWISTNB	NM_001002926	exon4	c.A648G	p.E216E	.	.	38	4	21	0	.	91
TXNDC11	51061	bcgsc.ca	37	16	11785664	11785664	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TXNDC11	NM_015914	exon8	c.C1382A	p.P461Q	.	.	41	4	28	0	.	90
TYR	7299	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88911776	88911776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	TYR	NM_000372	exon1	c.G655C	p.E219Q	.	.	25	8	25	0	.	92
UBA3	9039	bcgsc.ca	37	3	69129299	69129299	+	Missense_Mutation	SNP	T	T	C	rs17852113		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBA3	NM_003968	exon2	c.A26G	p.K9R	.	.	27	4	34	0	T|1.000;|0.000	227
UBE3B	89910	bcgsc.ca	37	12	109937483	109937483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBE3B	NM_130466	exon12	c.A986G	p.E329G	.	.	89	4	57	0	.	660
UBE3C	9690	bcgsc.ca	37	7	157015981	157015981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBE3C	NM_014671	exon16	c.A2036G	p.E679G	.	.	205	7	181	0	.	704
UBLCP1	134510	bcgsc.ca	37	5	158699093	158699093	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBLCP1	NM_145049	exon6	c.A511G	p.T171A	.	.	177	6	161	0	.	91
UBR1	197131	bcgsc.ca	37	15	43352277	43352277	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBR1	NM_174916	exon7	c.T834C	p.A278A	.	.	162	6	123	0	.	91
UBR3	130507	bcgsc.ca	37	2	170802803	170802803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBR3	NM_172070	exon21	c.G2811T	p.L937F	.	.	139	8	108	0	.	68
UBR4	23352	ucsc.edu	37	1	19467977	19467977	+	Silent	SNP	A	A	G	rs12068417	bycluster;alternate_allele	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UBR4	NM_020765	exon57	c.T8352C	p.N2784N	.	.	38	4	44	0	A|1.000;|0.000	612
UCK2	7371	bcgsc.ca	37	1	165859535	165859535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UCK2	NM_012474	exon2	c.A194G	p.Y65C	.	.	50	4	60	0	.	91
UFD1L	7353	bcgsc.ca	37	22	19463044	19463044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UFD1L	NM_005659	exon2	c.T85A	p.S29T	.	.	62	4	61	0	.	227
UFM1	51569	ucsc.edu;bcgsc.ca	37	13	38933458	38933458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UFM1	NM_016617	exon5	c.G178T	p.A60S	.	.	38	4	74	0	.	68
UGGT1	56886	bcgsc.ca	37	2	128870763	128870763	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UGGT1	NM_020120	exon6	c.T627C	p.N209N	.	.	209	8	147	0	.	91
UGT1A8	54576	bcgsc.ca	37	2	234527178	234527178	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UGT1A8	NM_019076	exon1	c.C825A	p.I275I	.	.	69	5	51	0	.	27
UGT2B28	54490	bcgsc.ca	37	4	70155426	70155426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UGT2B28	NM_053039	exon4	c.T1046C	p.L349P	.	.	115	5	113	0	.	91
UHMK1	127933	bcgsc.ca	37	1	162469970	162469970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UHMK1	NM_175866	exon2	c.T494C	p.L165S	.	.	89	4	73	0	.	358
UHMK1	127933	bcgsc.ca	37	1	162492326	162492326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UHMK1	NM_175866	exon8	c.C1246A	p.Q416K	.	.	124	5	158	0	.	358
UIMC1	51720	bcgsc.ca	37	5	176338345	176338345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UIMC1	NM_016290	exon11	c.G1643T	p.G548V	.	.	54	4	42	0	.	208
UNC13C	440279	bcgsc.ca	37	15	54307156	54307156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon1	c.C2056A	p.Q686K	.	.	89	4	69	0	.	51
UNC13C	440279	broad.mit.edu;bcgsc.ca	37	15	54825170	54825170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon24	c.A5602G	p.M1868V	.	.	160	8	144	0	.	51
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54306377	54306377	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13C	NM_001080534	exon1	c.C1277T	p.T426I	.	.	86	36	65	0	.	51
UNC13D	201294	bcgsc.ca	37	17	73830775	73830775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UNC13D	NM_199242	exon22	c.T2015C	p.V672A	.	.	18	4	34	0	.	92
UNC79	57578	bcgsc.ca	37	14	93954068	93954068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_020818	exon5	c.C148A	p.L50I	.	.	53	4	50	0	.	.
UPF3A	65110	ucsc.edu	37	13	115051860	115051860	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UPF3A	NM_023011	exon4	c.G505T	p.G169X	.	.	46	4	72	0	.	91
UQCC	55245	ucsc.edu;bcgsc.ca	37	20	33902530	33902530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UQCC	NM_018244	exon8	c.G612T	p.M204I	.	.	45	5	54	0	.	153
USH1C	10083	bcgsc.ca	37	11	17542924	17542924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USH1C	NM_153676	exon13	c.G1054A	p.E352K	.	.	91	5	134	0	.	91
USH1C	10083	bcgsc.ca	37	11	17544780	17544780	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USH1C	NM_153676	exon11	c.C854T	p.T285I	.	.	36	5	45	1	.	91
USH2A	7399	bcgsc.ca	37	1	215963489	215963489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USH2A	NM_206933	exon51	c.C10094A	p.P3365Q	.	.	115	5	113	0	.	115
USH2A	7399	bcgsc.ca	37	1	216172369	216172369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USH2A	NM_206933	exon34	c.C6517A	p.L2173M	.	.	64	4	68	0	.	115
USH2A	7399	bcgsc.ca	37	1	216251611	216251611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USH2A	NM_206933	exon27	c.G5392A	p.G1798R	.	.	84	4	81	0	.	115
USHBP1	83878	bcgsc.ca	37	19	17370741	17370741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USHBP1	NM_031941	exon5	c.A733G	p.S245G	.	.	24	4	28	0	.	91
USP26	83844	bcgsc.ca	37	X	132161365	132161365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP26	NM_031907	exon1	c.A884G	p.H295R	.	.	78	4	69	0	.	661
USP33	23032	bcgsc.ca	37	1	78183712	78183712	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP33	NM_015017	exon18	c.A1851G	p.K617K	.	.	69	4	55	0	.	659
USP34	9736	bcgsc.ca	37	2	61433966	61433966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP34	NM_014709	exon71	c.G8975T	p.G2992V	.	.	65	4	42	0	.	579
USP34	9736	bcgsc.ca	37	2	61510400	61510400	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP34	NM_014709	exon37	c.A4878G	p.S1626S	.	.	130	5	102	0	.	579
USP43	124739	bcgsc.ca	37	17	9586241	9586241	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP43	NM_001267576	exon7	c.T1207C	p.C403R	.	.	75	4	60	0	.	637
USP4	7375	bcgsc.ca	37	3	49348978	49348978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP4	NM_003363	exon7	c.T805C	p.C269R	.	.	70	4	91	0	.	660
USP9X	8239	bcgsc.ca	37	X	41082536	41082536	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	USP9X	NM_001039591	exon39	c.A6632G	p.D2211G	.	.	110	7	154	0	.	563
UTP18	51096	broad.mit.edu;bcgsc.ca	37	17	49365534	49365534	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UTP18	NM_016001	exon11	c.T1473C	p.A491A	.	.	195	6	189	0	.	90
UTP20	27340	ucsc.edu;bcgsc.ca	37	12	101689334	101689334	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UTP20	NM_014503	exon12	c.T1328A	p.L443Q	.	.	41	4	38	0	.	155
UTRN	7402	bcgsc.ca	37	6	144779964	144779964	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	UTRN	NM_007124	exon19	c.G2343T	p.K781N	.	.	69	4	123	0	.	95
VARS2	57176	bcgsc.ca	37	6	30884934	30884934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VARS2	NM_001167734	exon9	c.T896C	p.L299S	.	.	88	5	92	0	.	26
VCAN	1462	ucsc.edu;bcgsc.ca	37	5	82817434	82817434	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VCAN	NM_004385	exon7	c.T3309C	p.S1103S	.	.	46	4	39	0	.	238
VNN2	8875	ucsc.edu;bcgsc.ca	37	6	133078849	133078849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VNN2	NM_004665	exon1	c.A174G	p.I58M	.	.	44	4	71	0	.	90
VPRBP	9730	bcgsc.ca	37	3	51450504	51450504	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPRBP	NM_014703	exon21	c.A3894G	p.K1298K	.	.	102	5	129	0	.	92
VPS13A	23230	bcgsc.ca	37	9	79968384	79968384	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS13A	NM_001018038	exon54	c.A7479G	p.E2493E	.	.	110	5	134	1	.	161
VPS13C	54832	bcgsc.ca	37	15	62242600	62242600	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS13C	NM_020821	exon41	c.C4553A	p.P1518Q	.	.	85	4	86	0	.	92
VPS13C	54832	bcgsc.ca	37	15	62266581	62266581	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS13C	NM_020821	exon25	c.T2444C	p.V815A	.	.	61	4	49	0	.	92
VPS33A	65082	bcgsc.ca	37	12	122723189	122723189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS33A	NM_022916	exon10	c.G1247A	p.C416Y	.	.	69	4	47	0	.	91
VPS45	11311	bcgsc.ca	37	1	150054833	150054833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS45	NM_007259	exon10	c.A970G	p.M324V	.	.	54	4	43	0	.	91
VPS4B	9525	bcgsc.ca	37	18	61067794	61067794	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS4B	NM_004869	exon6	c.A627T	p.L209L	.	.	122	6	105	0	.	91
VPS53	55275	bcgsc.ca	37	17	602569	602569	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS53	NM_001128159	exon4	c.218+2T>C	.	.	.	84	4	72	1	.	90
VPS8	23355	bcgsc.ca	37	3	184542548	184542548	+	Missense_Mutation	SNP	A	A	G	rs117998598	byfrequency;by1000genomes	TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS8	NM_001009921	exon2	c.A128G	p.K43R	.	.	69	4	101	0	A|0.998;G|0.002	91
VPS8	23355	bcgsc.ca	37	3	184612635	184612635	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VPS8	NM_001009921	exon22	c.T1926C	p.H642H	.	.	93	4	128	0	.	91
VWA8	23078	bcgsc.ca	37	13	42259348	42259348	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_015058	exon35	c.C4162T	p.P1388S	.	.	66	4	120	0	.	.
VWA8	23078	ucsc.edu	37	13	42361596	42361596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_015058	exon18	c.A2147G	p.E716G	.	.	25	5	29	1	.	.
VWDE	221806	bcgsc.ca	37	7	12407102	12407102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	VWDE	NM_001135924	exon13	c.A2779T	p.T927S	.	.	119	5	58	0	.	68
WASF1	8936	bcgsc.ca	37	6	110434566	110434566	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WASF1	NM_001024935	exon4	c.T231C	p.S77S	.	.	75	5	112	0	.	90
WBP11	51729	bcgsc.ca	37	12	14946698	14946698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WBP11	NM_016312	exon8	c.G880T	p.G294C	.	.	146	6	143	0	.	92
WBP2	23558	bcgsc.ca	37	17	73845724	73845724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WBP2	NM_012478	exon3	c.G265A	p.A89T	.	.	53	5	70	0	.	90
WBP2NL	164684	bcgsc.ca	37	22	42415750	42415750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WBP2NL	NM_152613	exon3	c.G256A	p.E86K	.	.	68	4	87	0	.	92
WDFY2	115825	ucsc.edu	37	13	52325550	52325550	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDFY2	NM_052950	exon8	c.A830G	p.E277G	.	.	38	5	67	2	.	90
WDHD1	11169	bcgsc.ca	37	14	55408362	55408362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDHD1	NM_007086	exon26	c.A3236G	p.E1079G	.	.	177	7	167	0	.	91
WDR47	22911	ucsc.edu;bcgsc.ca	37	1	109553939	109553939	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR47	NM_001142550	exon5	c.T750C	p.S250S	.	.	42	5	50	0	.	91
WDR60	55112	bcgsc.ca	37	7	158711559	158711559	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR60	NM_018051	exon15	c.A1920G	p.Q640Q	.	.	64	4	43	0	.	92
WDR70	55100	bcgsc.ca	37	5	37726997	37726997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR70	NM_018034	exon17	c.G1727T	p.R576L	.	.	70	4	76	0	.	187
WDR76	79968	bcgsc.ca	37	15	44136143	44136143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WDR76	NM_024908	exon8	c.T923C	p.V308A	.	.	110	6	78	0	.	90
WDR87	83889	bcgsc.ca	37	19	38379572	38379572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_031951	exon6	c.A4622G	p.E1541G	.	.	127	5	114	0	.	.
WISP3	8838	bcgsc.ca	37	6	112389500	112389500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WISP3	NM_198239	exon4	c.T736C	p.S246P	.	.	156	5	269	0	.	90
WNT8B	7479	bcgsc.ca	37	10	102240789	102240789	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WNT8B	NM_003393	exon4	c.T276C	p.S92S	.	.	73	4	82	0	.	625
WRN	7486	bcgsc.ca	37	8	30921872	30921872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WRN	NM_000553	exon4	c.A277G	p.K93E	.	.	144	7	174	0	.	1036
WRN	7486	bcgsc.ca	37	8	30982498	30982498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WRN	NM_000553	exon23	c.G2807A	p.C936Y	.	.	121	5	99	0	.	1036
WRN	7486	bcgsc.ca	37	8	31001102	31001102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	WRN	NM_000553	exon28	c.G3346T	p.D1116Y	.	.	103	5	123	0	.	1036
XDH	7498	ucsc.edu	37	2	31562492	31562492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XDH	NM_000379	exon34	c.C3637T	p.H1213Y	.	.	47	4	39	0	.	158
XIAP	331	bcgsc.ca	37	X	123019780	123019780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XIAP	NM_001204401	exon2	c.T268C	p.C90R	.	.	65	5	57	0	.	1084
XRN2	22803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21346075	21346075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	XRN2	NM_012255	exon25	c.C2272T	p.P758S	.	.	93	40	107	0	.	515
YARS2	51067	bcgsc.ca	37	12	32908049	32908049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	YARS2	NM_001040436	exon1	c.G760A	p.G254R	.	.	104	5	52	0	.	90
YWHAE	7531	bcgsc.ca	37	17	1257629	1257629	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	YWHAE	NM_006761	exon5	c.A591G	p.A197A	.	.	51	4	52	0	.	659
ZBTB11	27107	bcgsc.ca	37	3	101390078	101390078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB11	NM_014415	exon3	c.A674T	p.Y225F	.	.	95	4	93	0	.	91
ZBTB12	221527	bcgsc.ca	37	6	31867929	31867929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB12	NM_181842	exon2	c.A1154G	p.K385R	.	.	99	5	137	0	.	90
ZBTB48	3104	ucsc.edu;bcgsc.ca	37	1	6646059	6646059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB48	NM_005341	exon4	c.A1013G	p.E338G	.	.	44	4	56	0	.	514
ZBTB6	10773	bcgsc.ca	37	9	125674252	125674252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZBTB6	NM_006626	exon2	c.G100T	p.D34Y	.	.	52	5	61	0	.	90
ZCCHC10	54819	bcgsc.ca	37	5	132334452	132334452	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZCCHC10	NM_017665	exon4	c.C336T	p.S112S	.	.	135	5	110	0	.	90
ZDBF2	57683	bcgsc.ca	37	2	207175584	207175584	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZDBF2	NM_020923	exon5	c.C6332A	p.P2111Q	.	.	88	4	37	0	.	3
ZDHHC3	51304	ucsc.edu;bcgsc.ca	37	3	44986740	44986740	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZDHHC3	NM_016598	exon3	c.T351C	p.S117S	.	.	42	5	105	0	.	90
ZFHX4	79776	bcgsc.ca	37	8	77761907	77761907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZFHX4	NM_024721	exon8	c.C3805T	p.H1269Y	.	.	65	4	43	0	.	98
ZFP69	339559	bcgsc.ca	37	1	40960622	40960622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_198494	exon6	c.T472C	p.S158P	.	.	82	5	62	0	.	.
ZFX	7543	bcgsc.ca	37	X	24197721	24197721	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZFX	NM_003410	exon5	c.T480C	p.S160S	.	.	66	4	97	0	.	132
ZKSCAN3	80317	bcgsc.ca	37	6	28333237	28333237	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZKSCAN3	NM_024493	exon6	c.T792C	p.P264P	.	.	61	6	77	0	.	92
ZMIZ1	57178	bcgsc.ca	37	10	81072458	81072458	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZMIZ1	NM_020338	exon25	c.G3156A	p.L1052L	.	.	88	5	114	0	.	292
ZMPSTE24	10269	bcgsc.ca	37	1	40726583	40726583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZMPSTE24	NM_005857	exon2	c.A196G	p.K66E	.	.	68	4	100	0	.	226
ZNF12	7559	bcgsc.ca	37	7	6731932	6731932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF12	NM_016265	exon5	c.A641G	p.E214G	.	.	108	5	110	0	.	90
ZNF135	7694	ucsc.edu	37	19	58579105	58579105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF135	NM_007134	exon4	c.C1325A	p.A442D	.	.	47	4	44	0	.	91
ZNF138	7697	bcgsc.ca	37	7	64291331	64291331	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF138	NM_001160183	exon4	c.C222A	p.T74T	.	.	99	4	73	0	.	90
ZNF138	7697	bcgsc.ca	37	7	64291865	64291865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF138	NM_001271639	exon4	c.A245G	p.E82G	.	.	241	6	238	0	.	90
ZNF181	339318	bcgsc.ca	37	19	35232974	35232974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF181	NM_001029997	exon4	c.A1688G	p.E563G	.	.	119	5	70	0	.	91
ZNF182	7569	bcgsc.ca	37	X	47836150	47836150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF182	NM_006962	exon7	c.G1336T	p.G446C	.	.	105	5	125	0	.	132
ZNF19	7567	bcgsc.ca	37	16	71509307	71509307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF19	NM_006961	exon6	c.G1143T	p.Q381H	.	.	82	4	50	0	.	90
ZNF20	7568	ucsc.edu;bcgsc.ca	37	19	12243668	12243668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF20	NM_021143	exon4	c.C1333T	p.H445Y	.	.	41	4	40	0	.	22
ZNF222	7673	bcgsc.ca	37	19	44536749	44536749	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF222	NM_001129996	exon4	c.A1042T	p.M348L	.	.	79	4	51	0	.	93
ZNF227	7770	bcgsc.ca	37	19	44739427	44739427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF227	NM_182490	exon6	c.T844C	p.S282P	.	.	86	6	55	0	.	91
ZNF234	10780	bcgsc.ca	37	19	44660771	44660771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_006630	exon6	c.A602G	p.E201G	.	.	111	5	78	1	.	.
ZNF250	58500	bcgsc.ca	37	8	146107795	146107795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_021061	exon6	c.C788T	p.A263V	.	.	106	6	73	0	.	.
ZNF259	8882	bcgsc.ca	37	11	116652955	116652955	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF259	NM_003904	exon12	c.C1098A	p.T366T	.	.	42	4	48	0	.	90
ZNF280C	55609	bcgsc.ca	37	X	129364498	129364498	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF280C	NM_017666	exon9	c.T975A	p.L325L	.	.	83	4	62	0	.	132
ZNF318	24149	bcgsc.ca	37	6	43309907	43309907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF318	NM_014345	exon8	c.A3319G	p.S1107G	.	.	54	4	42	0	.	157
ZNF318	24149	bcgsc.ca	37	6	43322966	43322966	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF318	NM_014345	exon4	c.T2106C	p.P702P	.	.	80	5	90	0	.	157
ZNF330	27309	ucsc.edu	37	4	142150844	142150844	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF330	NM_014487	exon6	c.G411A	p.W137X	.	.	44	4	45	0	.	90
ZNF335	63925	bcgsc.ca	37	20	44577633	44577633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF335	NM_022095	exon28	c.C3988A	p.Q1330K	.	.	62	4	94	1	.	94
ZNF382	84911	bcgsc.ca	37	19	37117040	37117040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF382	NM_032825	exon5	c.G241T	p.G81W	.	.	93	4	54	0	.	90
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58084146	58084146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF416	NM_017879	exon4	c.C1126G	p.H376D	.	.	115	29	82	1	.	90
ZNF433	163059	ucsc.edu;bcgsc.ca	37	19	12128986	12128986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001080411	exon2	c.C134A	p.S45Y	.	.	50	4	56	0	.	.
ZNF43	7594	bcgsc.ca	37	19	21992219	21992219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF43	NM_001256653	exon4	c.G647T	p.C216F	.	.	108	5	78	0	.	154
ZNF443	10224	bcgsc.ca	37	19	12541954	12541954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF443	NM_005815	exon4	c.A1032G	p.K344K	.	.	92	4	65	0	.	91
ZNF443	10224	bcgsc.ca	37	19	12541999	12541999	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF443	NM_005815	exon4	c.C987T	p.T329T	.	.	84	4	53	0	.	91
ZNF445	353274	ucsc.edu;bcgsc.ca	37	3	44492406	44492406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF445	NM_181489	exon5	c.C647A	p.P216Q	.	.	37	4	41	0	.	91
ZNF462	58499	bcgsc.ca	37	9	109690447	109690447	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon3	c.T4254C	p.L1418L	.	.	52	4	116	1	.	95
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109690181	109690181	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon3	c.C3988G	p.H1330D	.	.	42	4	54	0	.	95
ZNF462	58499	ucsc.edu;bcgsc.ca	37	9	109734383	109734383	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF462	NM_021224	exon8	c.T6525C	p.P2175P	.	.	40	5	57	0	.	95
ZNF469	84627	ucsc.edu;bcgsc.ca	37	16	88498440	88498440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001127464	exon2	c.G4478T	p.G1493V	.	.	29	4	45	0	.	.
ZNF474	133923	bcgsc.ca	37	5	121488274	121488274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF474	NM_207317	exon2	c.C589A	p.P197T	.	.	53	4	53	0	.	90
ZNF486	90649	bcgsc.ca	37	19	20308041	20308041	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF486	NM_052852	exon4	c.A522G	p.R174R	.	.	83	4	84	0	.	47
ZNF493	284443	bcgsc.ca	37	19	21606489	21606489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF493	NM_001076678	exon4	c.A1028G	p.H343R	.	.	48	4	49	0	.	516
ZNF502	91392	ucsc.edu;bcgsc.ca	37	3	44763562	44763562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF502	NM_001134440	exon4	c.A1253G	p.Q418R	.	.	36	4	34	0	.	90
ZNF503	84858	broad.mit.edu;bcgsc.ca	37	10	77159617	77159617	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF503	NM_032772	exon2	c.G831A	p.T277T	.	.	31	4	66	0	.	91
ZNF521	25925	bcgsc.ca	37	18	22930883	22930883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF521	NM_015461	exon2	c.A28G	p.R10G	.	.	48	5	75	0	.	275
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	56585829	56585829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF532	NM_018181	exon4	c.A310G	p.K104E	.	.	73	14	56	0	.	154
ZNF534	147658	bcgsc.ca	37	19	52942488	52942488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF534	NM_001143939	exon4	c.A1814G	p.H605R	.	.	76	4	64	1	.	68
ZNF550	162972	bcgsc.ca	37	19	58058987	58058987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF550	.	.	.	.	.	.	109	5	67	0	.	90
ZNF554	115196	ucsc.edu;bcgsc.ca	37	19	2827728	2827728	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF554	NM_001102651	exon3	c.C240T	p.N80N	.	.	39	4	52	0	.	91
ZNF561	93134	bcgsc.ca	37	19	9721118	9721118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF561	NM_152289	exon6	c.C1219A	p.R407S	.	.	71	4	63	0	.	91
ZNF577	84765	bcgsc.ca	37	19	52381659	52381659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF577	NM_032679	exon5	c.T170C	p.I57T	.	.	89	5	86	0	.	91
ZNF578	147660	bcgsc.ca	37	19	53015243	53015243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	NM_001099694	exon6	c.A1609G	p.K537E	.	.	59	4	44	0	.	.
ZNF592	9640	ucsc.edu	37	15	85326319	85326319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF592	NM_014630	exon4	c.T413C	p.F138S	.	.	42	4	23	0	.	96
ZNF598	90850	bcgsc.ca	37	16	2052682	2052682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF598	NM_178167	exon6	c.C517T	p.R173C	.	.	53	4	60	0	.	432
ZNF677	342926	bcgsc.ca	37	19	53740391	53740391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF677	NM_182609	exon5	c.T1589C	p.L530P	.	.	145	5	99	0	.	91
ZNF679	168417	bcgsc.ca	37	7	63720600	63720600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF679	NM_153363	exon3	c.G41A	p.G14E	.	.	111	5	72	0	.	1
ZNF713	349075	bcgsc.ca	37	7	56007015	56007015	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF713	NM_182633	exon4	c.C609A	p.I203I	.	.	73	4	43	0	.	92
ZNF714	148206	bcgsc.ca	37	19	21300052	21300052	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF714	NM_182515	exon5	c.T582C	p.H194H	.	.	50	4	60	0	.	67
ZNF732	654254	bcgsc.ca	37	4	289919	289919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF732	NM_001137608	exon1	c.C26A	p.A9D	.	.	84	4	66	0	.	22
ZNF7	7553	bcgsc.ca	37	8	146068311	146068311	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF7	NM_003416	exon5	c.C1819A	p.Q607K	.	.	49	4	34	0	.	94
ZNF780A	284323	bcgsc.ca	37	19	40580852	40580852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF780A	NM_001142577	exon6	c.G1500T	p.K500N	.	.	61	4	59	0	.	22
ZNF816	125893	bcgsc.ca	37	19	53453371	53453371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF816	NM_001202457	exon4	c.G1657T	p.A553S	.	.	97	4	64	0	.	68
ZNF92	168374	bcgsc.ca	37	7	64863305	64863305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZNF92	NM_152626	exon4	c.A278G	p.D93G	.	.	84	4	70	0	.	514
ZP3	7784	bcgsc.ca	37	7	76062337	76062337	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZP3	NM_001110354	exon3	c.T525C	p.R175R	.	.	85	5	65	0	.	90
ZW10	9183	bcgsc.ca	37	11	113609105	113609105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZW10	NM_004724	exon13	c.T1765C	p.F589L	.	.	64	4	68	0	.	228
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3957431	3957431	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	ZZEF1	NM_015113	exon34	c.G5354T	p.G1785V	.	.	50	16	42	0	.	93
ATP11A	23250	bcgsc.ca	37	13	113459291	113459292	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	p.P62S	.	.	.	.	.	.	.	
NAA15	80155	bcgsc.ca	37	4	140262196	140262197	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-G3-A25T-01A-11D-A16V-10	TCGA-G3-A25T-10A-01D-A16V-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	41840dc1-5ea2-4f01-a0d4-8b65add641c8	ad831284-a522-4712-b7b4-134b92be8125	.	.	.	.	.	p.Q126K	.	.	.	.	.	.	.	
