Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	bcgsc.ca	37	12	8988204	8988204	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	A2ML1	NM_144670	exon6	c.C585A	p.T195T	.	.	107	5	101	1	.	93
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	9010546	9010546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	A2ML1	NM_144670	exon26	c.A3112T	p.T1038S	.	.	46	4	68	0	.	93
AADAC	13	ucsc.edu;bcgsc.ca	37	3	151545758	151545758	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AADAC	NM_001086	exon5	c.C998A	p.P333H	.	.	45	4	53	0	.	280
AADACL2	344752	bcgsc.ca	37	3	151461938	151461938	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AADACL2	NM_207365	exon3	c.T419C	p.V140A	.	.	185	6	138	0	.	90
AAR2	25980	bcgsc.ca	37	20	34827911	34827911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001271874	exon2	c.G121A	p.V41I	.	.	59	4	55	0	.	.
AARS2	57505	bcgsc.ca	37	6	44274253	44274253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AARS2	NM_020745	exon8	c.A1166G	p.E389G	.	.	79	4	94	0	.	91
ABCA10	10349	bcgsc.ca	37	17	67218731	67218731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA10	NM_080282	exon5	c.C142A	p.L48M	.	.	143	6	103	0	.	93
ABCA1	19	bcgsc.ca	37	9	107578603	107578603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA1	NM_005502	exon25	c.A3559G	p.I1187V	.	.	76	4	38	0	.	1016
ABCA12	26154	bcgsc.ca	37	2	215875124	215875124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA12	NM_173076	exon18	c.G2403T	p.L801F	.	.	84	4	80	0	.	99
ABCA2	20	bcgsc.ca	37	9	139906126	139906126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA2	NM_212533	exon36	c.A5701G	p.T1901A	.	.	65	4	66	0	.	90
ABCA6	23460	bcgsc.ca	37	17	67130849	67130849	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA6	NM_080284	exon5	c.T495C	p.C165C	.	.	80	4	59	0	.	159
ABCA8	10351	bcgsc.ca	37	17	66933174	66933174	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCA8	NM_007168	exon4	c.C384A	p.T128T	.	.	169	5	104	0	.	93
ABCC3	8714	bcgsc.ca	37	17	48745878	48745878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCC3	NM_003786	exon14	c.G1870T	p.G624C	.	.	64	4	41	0	.	93
ABCC4	10257	bcgsc.ca	37	13	95696597	95696597	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCC4	NM_005845	exon28	c.G3552T	p.L1184L	.	.	97	5	57	0	.	515
ABCC4	10257	bcgsc.ca	37	13	95860136	95860136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCC4	NM_005845	exon7	c.A829G	p.N277D	.	.	204	7	170	0	.	515
ABCC5	10057	bcgsc.ca	37	3	183681222	183681222	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABCC5	NM_005688	exon15	c.G2186T	p.R729L	.	.	64	4	82	0	.	137
ABHD3	171586	bcgsc.ca	37	18	19236886	19236886	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABHD3	NM_138340	exon8	c.G993A	p.L331L	.	.	78	4	67	0	.	90
ABI1	10006	bcgsc.ca	37	10	27040624	27040624	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABI1	NM_005470	exon11	c.A1254G	p.P418P	.	.	216	7	151	0	.	1082
ABR	29	ucsc.edu;bcgsc.ca	37	17	975919	975919	+	Missense_Mutation	SNP	A	A	G	rs200320950		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ABR	NM_021962	exon8	c.T829C	p.F277L	.	.	31	5	83	0	A|1.000;G|0.000	91
ACAP2	23527	bcgsc.ca	37	3	195009957	195009957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACAP2	NM_012287	exon21	c.G2067T	p.Q689H	.	.	134	5	141	1	.	136
ACAT2	39	bcgsc.ca	37	6	160198476	160198476	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACAT2	NM_005891	exon7	c.C900T	p.A300A	.	.	93	4	62	0	.	91
ACER3	55331	bcgsc.ca	37	11	76709865	76709865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACER3	NM_018367	exon7	c.G497T	p.W166L	.	.	80	5	80	0	.	90
ACOT12	134526	bcgsc.ca	37	5	80640015	80640015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACOT12	NM_130767	exon9	c.G944T	p.R315L	.	.	108	5	99	0	.	92
ACP1	52	bcgsc.ca	37	2	277039	277039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACP1	NM_007099	exon5	c.G353T	p.G118V	.	.	168	7	162	1	.	523
ACSBG2	81616	bcgsc.ca	37	19	6183075	6183075	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACSBG2	NM_030924	exon10	c.C1114A	p.R372S	.	.	45	5	39	0	.	23
ACSL1	2180	bcgsc.ca	37	4	185694817	185694817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACSL1	NM_001995	exon9	c.G841T	p.G281C	.	.	135	5	154	0	.	92
ACTR3	10096	bcgsc.ca	37	2	114670748	114670748	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACTR3	NM_005721	exon2	c.45-1G>T	.	.	.	203	7	166	0	.	91
ACTR5	79913	bcgsc.ca	37	20	37378657	37378657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACTR5	NM_024855	exon2	c.G380A	p.C127Y	.	.	81	4	69	0	.	90
ACTR5	79913	bcgsc.ca	37	20	37384515	37384515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACTR5	NM_024855	exon5	c.G1009A	p.G337S	.	.	60	4	55	0	.	90
ACYP2	98	bcgsc.ca	37	2	54365880	54365880	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACYP2	NM_138448	exon3	c.T180C	p.N60N	.	.	184	6	164	0	.	226
ACYP2	98	bcgsc.ca	37	2	54531833	54531833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ACYP2	NM_138448	exon4	c.G194T	p.W65L	.	.	58	4	47	0	.	226
ADAD1	132612	bcgsc.ca	37	4	123332428	123332428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAD1	NM_139243	exon9	c.G900T	p.M300I	.	.	271	8	211	0	.	90
ADAM18	8749	bcgsc.ca	37	8	39581361	39581361	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAM18	NM_014237	exon19	c.C2112A	p.T704T	.	.	165	6	111	0	.	228
ADAM28	10863	bcgsc.ca	37	8	24207429	24207429	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAM28	NM_014265	exon19	c.G2043T	p.V681V	.	.	176	9	136	0	.	228
ADAM30	11085	bcgsc.ca	37	1	120436724	120436724	+	Missense_Mutation	SNP	T	T	C	rs61757470		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAM30	NM_021794	exon1	c.A2236G	p.T746A	.	.	524	16	443	4	.	228
ADAM30	11085	bcgsc.ca	37	1	120437478	120437478	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAM30	NM_021794	exon1	c.T1482C	p.R494R	.	.	82	4	87	0	.	228
ADAM7	8756	broad.mit.edu	37	8	24358377	24358377	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAM7	NM_003817	exon19	c.C2077A	p.R693R	.	.	130	8	112	0	.	230
ADAMTS5	11096	bcgsc.ca	37	21	28338164	28338164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS5	NM_007038	exon1	c.G547A	p.G183R	.	.	56	4	63	0	.	229
ADAMTS6	11174	bcgsc.ca	37	5	64595895	64595895	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS6	NM_197941	exon10	c.A1287G	p.K429K	.	.	52	4	47	0	.	226
ADAMTS7	11173	bcgsc.ca	37	15	79056339	79056339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS7	NM_014272	exon21	c.G4522T	p.A1508S	.	.	17	3	50	0	.	226
ADAMTS7	11173	ucsc.edu;bcgsc.ca	37	15	79058506	79058506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS7	NM_014272	exon19	c.C3747T	p.T1249T	.	.	25	4	48	0	.	226
ADAMTS9	56999	bcgsc.ca	37	3	64580083	64580083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS9	NM_182920	exon28	c.A4207G	p.R1403G	.	.	91	4	95	0	.	230
ADAMTS9	56999	bcgsc.ca	37	3	64601695	64601695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTS9	NM_182920	exon20	c.C2965A	p.R989S	.	.	70	4	62	0	.	230
ADAMTSL3	57188	ucsc.edu	37	15	84652087	84652087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADAMTSL3	NM_207517	exon21	c.C3707A	p.P1236H	.	.	42	4	35	0	.	1153
ADCY10	55811	bcgsc.ca	37	1	167829127	167829127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADCY10	NM_018417	exon16	c.C1814A	p.P605H	.	.	121	6	83	0	.	493
ADCY10	55811	bcgsc.ca	37	1	167847868	167847868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADCY10	NM_018417	exon12	c.G1222T	p.G408C	.	.	100	5	64	1	.	493
ADCY10	55811	bcgsc.ca	37	1	167865838	167865838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADCY10	NM_018417	exon7	c.A734G	p.H245R	.	.	107	6	74	0	.	493
ADCY10	55811	bcgsc.ca	37	1	167868838	167868838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADCY10	NM_018417	exon6	c.G465T	p.L155F	.	.	71	4	35	0	.	493
ADCY9	115	bcgsc.ca	37	16	4164733	4164733	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADCY9	NM_001116	exon2	c.C711T	p.V237V	.	.	68	4	87	0	.	139
ADD3	120	bcgsc.ca	37	10	111877099	111877099	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADD3	NM_019903	exon5	c.487-1G>T	.	.	.	70	5	113	0	.	157
ADORA2B	136	ucsc.edu;bcgsc.ca	37	17	15878047	15878047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADORA2B	NM_000676	exon2	c.G390T	p.W130C	.	.	45	5	87	0	.	228
ADRBK2	157	bcgsc.ca	37	22	26063751	26063751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ADRBK2	NM_005160	exon6	c.C487A	p.Q163K	.	.	73	4	72	0	.	955
AFF3	3899	bcgsc.ca	37	2	100203660	100203660	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AFF3	NM_001025108	exon15	c.C2622A	p.T874T	.	.	162	7	231	0	.	230
AFF4	27125	bcgsc.ca	37	5	132270482	132270482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AFF4	NM_014423	exon3	c.C275A	p.P92Q	.	.	119	5	112	0	.	229
AFG3L2	10939	ucsc.edu	37	18	12353119	12353119	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AFG3L2	NM_006796	exon10	c.T1203C	p.P401P	.	.	42	5	24	0	.	90
AGBL4	84871	bcgsc.ca	37	1	49100264	49100264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AGBL4	NM_032785	exon9	c.G852T	p.M284I	.	.	56	4	41	0	.	137
AGK	55750	bcgsc.ca	37	7	141341107	141341107	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AGK	NM_018238	exon12	c.C786A	p.P262P	.	.	60	4	54	0	.	290
AGO1	26523	ucsc.edu;bcgsc.ca	37	1	36367825	36367825	+	Silent	SNP	C	C	T	rs199936275	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_012199	exon11	c.C1284T	p.P428P	.	.	46	4	29	0	C|0.999;A|0.000	.
AGXT	189	bcgsc.ca	37	2	241814576	241814576	+	Missense_Mutation	SNP	T	T	C	rs121908525	bycluster	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AGXT	NM_000030	exon7	c.T731C	p.I244T	.	.	51	4	69	0	.	90
AHI1	54806	bcgsc.ca	37	6	135732677	135732677	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AHI1	NM_001134832	exon20	c.C2770A	p.Q924K	.	.	93	5	70	0	.	227
AHNAK	79026	bcgsc.ca	37	11	62287725	62287725	+	Missense_Mutation	SNP	A	A	G	rs200747495	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AHNAK	NM_001620	exon5	c.T14164C	p.S4722P	.	.	61	4	72	0	A|0.999;C|0.000	109
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62290411	62290411	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AHNAK	NM_001620	exon5	c.G11478T	p.V3826V	.	.	81	34	71	0	.	109
AIM1	202	bcgsc.ca	37	6	107003674	107003674	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AIM1	NM_001624	exon15	c.G4393T	p.G1465C	.	.	232	6	268	0	.	139
AKAP17A	8227	bcgsc.ca	37	X	1712973	1712973	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AKAP17A	NM_005088	exon2	c.C618A	p.T206T	.	.	25	5	44	0	.	40
AKAP6	9472	bcgsc.ca	37	14	33292789	33292789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AKAP6	NM_004274	exon13	c.G5770A	p.G1924R	.	.	112	6	103	0	.	733
ALDH16A1	126133	bcgsc.ca	37	19	49973562	49973562	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDH16A1	NM_153329	exon17	c.2248-1G>T	.	.	.	59	4	93	0	.	91
ALDH1A2	8854	ucsc.edu;bcgsc.ca	37	15	58247428	58247428	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDH1A2	NM_003888	exon13	c.G1524T	p.T508T	.	.	76	6	77	0	.	226
ALDH3B2	222	bcgsc.ca	37	11	67430862	67430862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDH3B2	NM_001031615	exon10	c.G982T	p.G328W	.	.	56	5	81	0	.	226
ALDOB	229	bcgsc.ca	37	9	104190758	104190758	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALDOB	NM_000035	exon4	c.C372A	p.T124T	.	.	251	7	138	0	.	226
ALG6	29929	bcgsc.ca	37	1	63881628	63881628	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALG6	NM_013339	exon11	c.G987T	p.L329L	.	.	393	9	332	1	.	90
ALMS1	7840	bcgsc.ca	37	2	73717357	73717357	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALMS1	NM_015120	exon10	c.A8268G	p.E2756E	.	.	86	4	74	0	.	142
ALPK1	80216	bcgsc.ca	37	4	113348758	113348758	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ALPK1	NM_001102406	exon9	c.C732T	p.D244D	.	.	84	5	82	0	.	337
AMDHD1	144193	bcgsc.ca	37	12	96346493	96346493	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AMDHD1	NM_152435	exon2	c.138-2A>G	.	.	.	61	4	32	0	.	90
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63410591	63410591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152424	exon2	c.A2576T	p.Y859F	.	.	82	36	107	0	.	.
AMY2A	279	bcgsc.ca	37	1	104160136	104160136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AMY2A	NM_000699	exon1	c.G74T	p.R25L	.	.	615	12	669	3	.	92
ANGEL2	90806	bcgsc.ca	37	1	213170593	213170593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANGEL2	NM_144567	exon8	c.G1387A	p.G463R	.	.	79	4	148	0	.	68
ANGPT1	284	bcgsc.ca	37	8	108264188	108264188	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANGPT1	NM_001146	exon9	c.G1392T	p.A464A	.	.	264	8	182	0	.	521
ANGPT4	51378	ucsc.edu;bcgsc.ca	37	20	896833	896833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANGPT4	NM_015985	exon1	c.C25A	p.Q9K	.	.	27	4	38	0	.	92
ANK2	287	bcgsc.ca	37	4	113825610	113825610	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANK2	.	.	.	.	.	.	303	8	221	0	.	583
ANKAR	150709	bcgsc.ca	37	2	190554272	190554272	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKAR	NM_144708	exon3	c.G621A	p.K207K	.	.	46	4	61	1	.	72
ANKHD1	54882	bcgsc.ca	37	5	139889710	139889710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKHD1	NM_017747	exon22	c.G4048A	p.D1350N	.	.	74	4	58	0	.	185
ANKRA2	57763	bcgsc.ca	37	5	72858532	72858532	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRA2	NM_023039	exon2	c.C175A	p.R59R	.	.	103	6	86	0	.	90
ANKRD11	29123	bcgsc.ca	37	16	89352028	89352028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD11	NM_001256183	exon9	c.T922C	p.F308L	.	.	80	5	139	0	.	139
ANKRD1	27063	bcgsc.ca	37	10	92679967	92679967	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD1	NM_014391	exon2	c.G166T	p.G56W	.	.	57	5	75	0	.	90
ANKRD17	26057	bcgsc.ca	37	4	73984509	73984509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD17	NM_032217	exon22	c.A4084G	p.N1362D	.	.	109	5	62	0	.	234
ANKRD17	26057	bcgsc.ca	37	4	74014715	74014715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD17	NM_198889	exon8	c.A1382G	p.N461S	.	.	121	5	112	0	.	234
ANKRD20A5P	440482	bcgsc.ca	37	18	14184006	14184006	+	RNA	SNP	G	G	T	rs62085008	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD20A5P	.	.	.	.	.	.	89	4	87	0	A|0.037;C|0.000;G|0.962	90
ANKRD28	23243	bcgsc.ca	37	3	15755102	15755102	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD28	NM_015199	exon10	c.C1032T	p.H344H	.	.	87	4	77	0	.	135
ANKRD29	147463	bcgsc.ca	37	18	21214077	21214077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD29	NM_173505	exon5	c.G367T	p.G123W	.	.	64	6	54	0	.	156
ANKRD34B	340120	bcgsc.ca	37	5	79854512	79854512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD34B	NM_001004441	exon5	c.C1327A	p.Q443K	.	.	92	5	80	0	.	69
ANKRD55	79722	bcgsc.ca	37	5	55412452	55412452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANKRD55	NM_024669	exon9	c.C955A	p.Q319K	.	.	109	5	101	0	.	91
ANO3	63982	bcgsc.ca	37	11	26463563	26463563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ANO3	NM_031418	exon2	c.A145G	p.S49G	.	.	45	4	39	0	.	93
AOC3	8639	bcgsc.ca	37	17	41004446	41004446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AOC3	NM_003734	exon1	c.G1086T	p.E362D	.	.	59	4	58	0	.	516
AP1G1	164	bcgsc.ca	37	16	71783878	71783878	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP1G1	NM_001030007	exon16	c.G1425A	p.L475L	.	.	45	4	42	0	.	92
AP1G1	164	bcgsc.ca	37	16	71798549	71798549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP1G1	NM_001030007	exon9	c.G828T	p.Q276H	.	.	68	4	94	1	.	92
AP1M1	8907	bcgsc.ca	37	19	16338374	16338374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP1M1	NM_001130524	exon8	c.C725T	p.S242F	.	.	54	4	55	0	.	156
AP3B1	8546	bcgsc.ca	37	5	77334990	77334990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP3B1	NM_003664	exon23	c.G2686T	p.G896C	.	.	143	6	143	0	.	90
AP3B1	8546	bcgsc.ca	37	5	77512026	77512026	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP3B1	NM_003664	exon7	c.A639G	p.E213E	.	.	98	4	71	0	.	90
AP3B2	8120	bcgsc.ca	37	15	83346037	83346037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP3B2	NM_004644	exon13	c.G1477A	p.D493N	.	.	113	5	107	2	.	94
AP4E1	23431	bcgsc.ca	37	15	51207768	51207768	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP4E1	NM_007347	exon3	c.G346T	p.G116C	.	.	174	7	158	0	.	90
AP4E1	23431	bcgsc.ca	37	15	51217370	51217370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP4E1	NM_007347	exon5	c.A496G	p.I166V	.	.	84	4	62	0	.	90
AP4S1	11154	bcgsc.ca	37	14	31539089	31539089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AP4S1	NM_001254728	exon3	c.G179T	p.R60L	.	.	136	7	122	0	.	226
APAF1	317	bcgsc.ca	37	12	99061376	99061376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APAF1	NM_181868	exon10	c.G1448T	p.W483L	.	.	76	4	69	0	.	229
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99117014	99117014	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APAF1	NM_181861	exon23	c.A3128G	p.H1043R	.	.	123	48	113	0	.	229
APBA2	321	bcgsc.ca	37	15	29393961	29393961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APBA2	NM_005503	exon9	c.A1498G	p.I500V	.	.	58	4	53	0	.	90
APBB1IP	54518	bcgsc.ca	37	10	26851331	26851331	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APBB1IP	NM_019043	exon14	c.G1446T	p.E482D	.	.	53	5	46	0	.	652
APBB2	323	bcgsc.ca	37	4	40946897	40946897	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APBB2	NM_004307	exon7	c.C1029A	p.P343P	.	.	79	5	179	0	.	92
APC	324	bcgsc.ca	37	5	112102025	112102025	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APC	NM_001127511	exon2	c.A168G	p.E56E	.	.	214	6	198	0	.	12026
APC	324	bcgsc.ca	37	5	112177087	112177087	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APC	NM_001127510	exon17	c.T5796C	p.T1932T	.	.	179	6	167	0	.	12026
APPL1	26060	bcgsc.ca	37	3	57281505	57281505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	APPL1	NM_012096	exon9	c.A704G	p.N235S	.	.	101	5	49	0	.	153
AQP7	364	bcgsc.ca	37	9	33387091	33387091	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AQP7	NM_001170	exon5	c.145-1G>T	.	.	.	117	7	121	1	.	90
AQP9	366	bcgsc.ca	37	15	58471356	58471356	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AQP9	NM_020980	exon5	c.C525A	p.I175I	.	.	78	5	50	0	.	91
ARAP1	116985	ucsc.edu;bcgsc.ca	37	11	72407664	72407664	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARAP1	NM_001040118	exon23	c.C3202A	p.R1068R	.	.	34	5	26	0	.	91
ARAP2	116984	bcgsc.ca	37	4	36109244	36109244	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARAP2	NM_015230	exon27	c.T4228C	p.S1410P	.	.	93	4	118	0	.	93
ARAP2	116984	bcgsc.ca	37	4	36121274	36121274	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARAP2	NM_015230	exon24	c.C3961A	p.Q1321K	.	.	82	6	116	0	.	93
ARFGAP2	84364	bcgsc.ca	37	11	47195029	47195029	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARFGAP2	NM_032389	exon7	c.G567T	p.P189P	.	.	94	4	88	0	.	69
ARFGAP3	26286	bcgsc.ca	37	22	43206897	43206897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARFGAP3	NM_014570	exon12	c.A1118G	p.D373G	.	.	83	5	90	0	.	153
ARFIP1	27236	bcgsc.ca	37	4	153803963	153803963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARFIP1	NM_001025595	exon7	c.G722A	p.S241N	.	.	48	4	45	1	.	91
ARHGAP11A	9824	bcgsc.ca	37	15	32921955	32921955	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP11A	NM_199357	exon8	c.C1097A	p.P366Q	.	.	156	6	141	0	.	292
ARHGAP17	55114	bcgsc.ca	37	16	24942105	24942105	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP17	NM_001006634	exon19	c.G2515T	p.D839Y	.	.	253	7	264	0	.	227
ARHGAP19	84986	bcgsc.ca	37	10	99016115	99016115	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP19	NM_032900	exon6	c.G887T	p.G296V	.	.	57	4	94	0	.	651
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36272086	36272086	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGAP33	NM_052948	exon12	c.T1017G	p.I339M	.	.	42	19	34	0	.	229
ARHGAP42	143872	bcgsc.ca	37	11	100814552	100814552	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152432	exon10	c.A996G	p.T332T	.	.	59	4	60	0	.	.
ARHGEF28	64283	bcgsc.ca	37	5	73136304	73136304	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001080479	exon11	c.1147-1G>T	.	.	.	66	5	55	0	.	.
ARHGEF37	389337	bcgsc.ca	37	5	148996303	148996303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGEF37	NM_001001669	exon5	c.A632G	p.N211S	.	.	65	4	73	0	.	90
ARHGEF39	84904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35662720	35662720	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032818	exon7	c.A692T	p.Q231L	.	.	94	34	57	0	.	.
ARHGEF40	55701	ucsc.edu;bcgsc.ca	37	14	21550138	21550138	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARHGEF40	NM_018071	exon14	c.C3111A	p.I1037I	.	.	40	4	40	0	.	228
ARID1A	8289	ucsc.edu	37	1	27089708	27089708	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1A	NM_006015	exon8	c.G2664T	p.G888G	.	.	49	4	60	0	.	584
ARID1B	57492	bcgsc.ca	37	6	157517440	157517440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1B	NM_020732	exon16	c.A4004G	p.Y1335C	.	.	61	4	58	0	.	154
ARID1B	57492	bcgsc.ca	37	6	157528937	157528937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1B	NM_020732	exon20	c.G6662T	p.R2221L	.	.	118	5	99	0	.	154
ARID1B	57492	ucsc.edu;bcgsc.ca	37	6	157502181	157502181	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID1B	NM_020732	exon12	c.T3214A	p.W1072R	.	.	34	4	25	0	.	154
ARID4A	5926	bcgsc.ca	37	14	58814398	58814398	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID4A	NM_002892	exon15	c.G1206T	p.S402S	.	.	194	8	145	1	.	231
ARID4B	51742	bcgsc.ca	37	1	235338556	235338556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARID4B	NM_016374	exon22	c.G3607T	p.D1203Y	.	.	74	5	151	0	.	228
ARMC4	55130	bcgsc.ca	37	10	28270481	28270481	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARMC4	NM_018076	exon7	c.T850A	p.Y284N	.	.	62	4	36	0	.	96
ARMCX2	9823	bcgsc.ca	37	X	100910949	100910949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARMCX2	NM_014782	exon5	c.G1626T	p.L542F	.	.	145	5	129	0	.	136
ARNTL	406	bcgsc.ca	37	11	13398241	13398241	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARNTL	NM_001030272	exon15	c.C1377A	p.P459P	.	.	21	4	31	0	.	90
ARRB1	408	ucsc.edu	37	11	74993028	74993028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ARRB1	NM_020251	exon6	c.C392A	p.P131Q	.	.	49	4	57	0	.	567
ASB11	140456	bcgsc.ca	37	X	15301668	15301668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ASB11	NM_080873	exon7	c.C931T	p.H311Y	.	.	72	4	122	0	.	289
ASB11	140456	bcgsc.ca	37	X	15315758	15315758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ASB11	NM_080873	exon3	c.C307A	p.H103N	.	.	91	5	158	0	.	289
ASB14	142686	bcgsc.ca	37	3	57312779	57312779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ASB14	NM_001142733	exon8	c.G1057T	p.D353Y	.	.	61	4	68	0	.	226
ASCC3	10973	bcgsc.ca	37	6	101091970	101091970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ASCC3	NM_006828	exon23	c.G3669T	p.W1223C	.	.	67	4	64	0	.	96
ASH2L	9070	bcgsc.ca	37	8	37985835	37985835	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ASH2L	NM_004674	exon11	c.C1192A	p.R398R	.	.	67	4	54	0	.	131
ATAD2B	54454	broad.mit.edu;bcgsc.ca	37	2	24111270	24111270	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATAD2B	NM_001242338	exon4	c.369-1G>T	.	.	.	295	11	250	0	.	68
ATAD5	79915	bcgsc.ca	37	17	29162589	29162589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATAD5	NM_024857	exon2	c.A1490G	p.E497G	.	.	72	5	36	0	.	93
ATAT1	79969	bcgsc.ca	37	6	30595024	30595024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATAT1	NM_001031722	exon1	c.G44T	p.R15M	.	.	66	4	43	0	.	92
ATF7IP2	80063	bcgsc.ca	37	16	10524622	10524622	+	Missense_Mutation	SNP	G	G	T	rs113521958	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATF7IP2	NM_024997	exon3	c.G145T	p.G49C	.	.	152	5	151	0	G|0.996;A|0.004	186
ATL3	25923	bcgsc.ca	37	11	63411708	63411708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATL3	NM_015459	exon7	c.G644T	p.W215L	.	.	64	4	36	0	.	69
ATMIN	23300	bcgsc.ca	37	16	81077293	81077293	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATMIN	NM_015251	exon4	c.A1190G	p.Q397R	.	.	51	4	75	0	.	68
ATP10D	57205	bcgsc.ca	37	4	47527621	47527621	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP10D	NM_020453	exon5	c.A738G	p.E246E	.	.	48	5	66	0	.	93
ATP10D	57205	bcgsc.ca	37	4	47538506	47538506	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP10D	NM_020453	exon8	c.C1068A	p.P356P	.	.	61	4	123	1	.	93
ATP13A3	79572	bcgsc.ca	37	3	194174466	194174466	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP13A3	NM_024524	exon9	c.C807A	p.T269T	.	.	192	6	140	0	.	69
ATP13A4	84239	bcgsc.ca	37	3	193207607	193207607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP13A4	NM_032279	exon7	c.G650T	p.W217L	.	.	128	6	101	0	.	92
ATP1A2	477	bcgsc.ca	37	1	160094995	160094995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP1A2	NM_000702	exon7	c.C700T	p.P234S	.	.	39	4	43	0	.	518
ATP1A3	478	bcgsc.ca	37	19	42490116	42490116	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP1A3	NM_001256214	exon6	c.A545G	p.Q182R	.	.	82	4	90	0	.	92
ATP2B1	490	bcgsc.ca	37	12	89998087	89998087	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP2B1	NM_001001323	exon15	c.G2479T	p.D827Y	.	.	57	5	34	0	.	516
ATP2B1	490	bcgsc.ca	37	12	90015505	90015505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP2B1	NM_001001323	exon9	c.A1408G	p.T470A	.	.	115	6	107	0	.	516
ATP2B4	493	ucsc.edu	37	1	203677031	203677031	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP2B4	NM_001001396	exon10	c.T1356C	p.A452A	.	.	22	4	56	0	.	517
ATP5G2	517	ucsc.edu;bcgsc.ca	37	12	54063081	54063081	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP5G2	NM_005176	exon4	c.C333T	p.V111V	.	.	38	4	38	0	.	91
ATP5H	10476	bcgsc.ca	37	17	73038369	73038369	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP5H	NM_006356	exon3	c.G126T	p.L42F	.	.	68	6	39	0	.	90
ATP6V0A4	50617	bcgsc.ca	37	7	138418884	138418884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP6V0A4	NM_130841	exon15	c.A1688G	p.H563R	.	.	48	4	41	0	.	91
ATP6V1D	51382	bcgsc.ca	37	14	67810089	67810089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP6V1D	NM_015994	exon7	c.G523T	p.V175F	.	.	44	4	40	0	.	659
ATP6V1G3	127124	bcgsc.ca	37	1	198509725	198509725	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP6V1G3	NM_133262	exon2	c.A56G	p.K19R	.	.	55	4	63	0	.	90
ATP7B	540	bcgsc.ca	37	13	52539033	52539033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP7B	NM_000053	exon5	c.C1844A	p.P615Q	.	.	65	4	50	0	.	92
ATP8A2	51761	bcgsc.ca	37	13	26127971	26127971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP8A2	NM_016529	exon12	c.C1098A	p.F366L	.	.	108	5	107	0	.	138
ATP8B2	57198	bcgsc.ca	37	1	154316690	154316690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP8B2	NM_020452	exon19	c.G2094A	p.L698L	.	.	72	4	52	0	.	92
ATP9B	374868	bcgsc.ca	37	18	76936812	76936812	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATP9B	NM_198531	exon8	c.779-1G>T	.	.	.	58	4	38	0	.	93
ATR	545	bcgsc.ca	37	3	142274763	142274763	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATR	NM_001184	exon10	c.T2297C	p.F766S	.	.	76	4	55	0	.	1139
ATRN	8455	bcgsc.ca	37	20	3584861	3584861	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATRN	NM_139321	exon24	c.C3753A	p.I1251I	.	.	118	6	103	0	.	154
ATRNL1	26033	bcgsc.ca	37	10	117486789	117486789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATRNL1	NM_207303	exon27	c.G3827T	p.S1276I	.	.	13	3	38	0	.	96
ATRX	546	bcgsc.ca	37	X	76952141	76952141	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATRX	NM_138270	exon5	c.G294T	p.L98F	.	.	301	8	267	1	.	248
ATRX	546	broad.mit.edu	37	X	76937183	76937183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ATRX	NM_000489	exon9	c.C3565A	p.L1189I	.	.	357	8	362	0	.	248
AVL9	23080	bcgsc.ca	37	7	32598863	32598863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AVL9	NM_015060	exon10	c.G1002T	p.L334F	.	.	62	4	54	1	.	90
AWAT2	158835	bcgsc.ca	37	X	69263053	69263053	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AWAT2	NM_001002254	exon5	c.G513T	p.L171L	.	.	98	4	126	0	.	130
AXL	558	bcgsc.ca	37	19	41736939	41736939	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AXL	NM_021913	exon5	c.A654G	p.T218T	.	.	23	3	41	0	.	1403
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	212	1	122	0	.	90
B3GALT2	8707	bcgsc.ca	37	1	193149821	193149821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	B3GALT2	NM_003783	exon2	c.A872G	p.N291S	.	.	78	4	128	0	.	91
B4GALNT4	338707	bcgsc.ca	37	11	380400	380400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	B4GALNT4	NM_178537	exon18	c.G2824T	p.V942L	.	.	49	4	74	0	.	91
BABAM1	29086	ucsc.edu	37	19	17379757	17379757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_014173	exon2	c.C142A	p.R48S	.	.	53	4	59	0	.	.
BACE2	25825	bcgsc.ca	37	21	42615346	42615346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BACE2	NM_138992	exon5	c.G791T	p.W264L	.	.	117	5	120	1	.	92
BAP1	8314	bcgsc.ca	37	3	52436376	52436376	+	Silent	SNP	G	G	T	rs201122466	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BAP1	NM_004656	exon17	c.C2118A	p.I706I	.	.	31	5	33	0	G|0.999;A|0.000	1032
BARD1	580	bcgsc.ca	37	2	215593574	215593574	+	Silent	SNP	G	G	T	rs137888190	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BARD1	NM_000465	exon11	c.C2160A	p.V720V	.	.	163	5	138	0	G|1.000;A|0.000	415
BAZ1A	11177	bcgsc.ca	37	14	35245186	35245186	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BAZ1A	NM_013448	exon18	c.A2772G	p.Q924Q	.	.	90	5	80	0	.	291
BAZ2B	29994	broad.mit.edu	37	2	160289691	160289691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BAZ2B	NM_013450	exon9	c.C1477A	p.Q493K	.	.	363	12	332	0	.	94
BBS1	582	bcgsc.ca	37	11	66294180	66294180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BBS1	NM_024649	exon13	c.A1241G	p.E414G	.	.	62	4	69	0	.	91
BBS7	55212	bcgsc.ca	37	4	122774210	122774210	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BBS7	NM_018190	exon8	c.G750T	p.V250V	.	.	281	11	235	0	.	91
BCL2A1	597	bcgsc.ca	37	15	80253466	80253466	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BCL2A1	NM_004049	exon2	c.T471C	p.F157F	.	.	220	6	223	0	.	228
BCOR	54880	bcgsc.ca	37	X	39916482	39916482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BCOR	NM_001123385	exon11	c.G4521T	p.R1507S	.	.	77	5	140	0	.	229
BDP1	55814	bcgsc.ca	37	5	70835428	70835428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BDP1	NM_018429	exon28	c.A5974G	p.M1992V	.	.	56	4	40	0	.	92
BEND2	139105	bcgsc.ca	37	X	18213467	18213467	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BEND2	NM_153346	exon7	c.A1129T	p.T377S	.	.	105	5	127	0	.	133
BEST1	7439	bcgsc.ca	37	11	61725744	61725744	+	Missense_Mutation	SNP	T	T	C	rs62639277		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BEST1	NM_004183	exon7	c.T841C	p.F281L	.	.	111	5	141	0	.	90
BEST4	266675	ucsc.edu;bcgsc.ca	37	1	45251285	45251285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BEST4	NM_153274	exon5	c.C700A	p.L234I	.	.	56	4	52	0	.	91
BICD1	636	ucsc.edu;bcgsc.ca	37	12	32520626	32520626	+	Missense_Mutation	SNP	C	C	A	rs202246949	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BICD1	NM_001003398	exon8	c.C2483A	p.P828Q	.	.	20	4	31	0	.	153
BIRC3	330	ucsc.edu;bcgsc.ca	37	11	102206714	102206714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BIRC3	NM_001165	exon7	c.C1342T	p.R448W	.	.	24	4	36	0	.	662
BIRC6	57448	bcgsc.ca	37	2	32724731	32724731	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BIRC6	NM_016252	exon46	c.G8586T	p.S2862S	.	.	125	6	97	0	.	233
BOC	91653	broad.mit.edu;ucsc.edu	37	3	112991401	112991401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BOC	NM_033254	exon7	c.T812C	p.V271A	.	.	63	7	84	1	.	157
BOD1L1	259282	bcgsc.ca	37	4	13606463	13606463	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_148894	exon10	c.C2061A	p.T687T	.	.	84	4	145	0	.	.
BOLL	66037	bcgsc.ca	37	2	198621218	198621218	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BOLL	NM_197970	exon9	c.G699T	p.V233V	.	.	125	5	85	1	.	92
BPI	671	bcgsc.ca	37	20	36948592	36948592	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BPI	NM_001725	exon7	c.C684A	p.T228T	.	.	49	4	78	1	.	94
BPIFB4	149954	ucsc.edu	37	20	31669372	31669372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_182519	exon1	c.G40A	p.A14T	.	.	53	4	75	0	.	.
BPTF	2186	bcgsc.ca	37	17	65941945	65941945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BPTF	NM_004459	exon23	c.C7499A	p.P2500Q	.	.	143	6	87	0	.	94
BRCA1	672	bcgsc.ca	37	17	41244508	41244508	+	Missense_Mutation	SNP	T	T	C	rs80356933	bycluster	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRCA1	NM_007300	exon10	c.A3040G	p.M1014V	.	.	238	7	159	0	.	3415
BRCA1	672	bcgsc.ca	37	17	41245080	41245080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRCA1	NM_007300	exon10	c.G2468T	p.R823I	.	.	101	7	97	0	.	3415
BRCA1	672	bcgsc.ca	37	17	41251798	41251798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRCA1	NM_007298	exon6	c.G541A	p.E181K	.	.	69	5	75	0	.	3415
BRCC3	79184	bcgsc.ca	37	X	154305472	154305472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRCC3	NM_001242640	exon4	c.C226T	p.H76Y	.	.	76	4	87	0	.	706
BRF2	55290	bcgsc.ca	37	8	37706130	37706130	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRF2	NM_018310	exon2	c.T198C	p.S66S	.	.	139	7	138	1	.	90
BRPF3	27154	bcgsc.ca	37	6	36198294	36198294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRPF3	NM_015695	exon13	c.C3526A	p.R1176S	.	.	88	4	92	0	.	92
BRWD3	254065	bcgsc.ca	37	X	79941035	79941035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BRWD3	NM_153252	exon36	c.G4006A	p.G1336S	.	.	145	6	102	0	.	134
BTBD11	121551	bcgsc.ca	37	12	107712744	107712744	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTBD11	NM_001018072	exon1	c.G27T	p.V9V	.	.	47	4	60	0	.	93
BTBD1	53339	bcgsc.ca	37	15	83687462	83687462	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTBD1	NM_025238	exon7	c.C1287A	p.L429L	.	.	63	4	69	0	.	91
BTBD7	55727	bcgsc.ca	37	14	93709093	93709093	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTBD7	NM_001002860	exon11	c.C2925A	p.P975P	.	.	135	6	124	2	.	91
BTBD8	284697	bcgsc.ca	37	1	92613242	92613242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTBD8	NM_183242	exon9	c.T1021C	p.W341R	.	.	80	5	45	0	.	91
BTK	695	broad.mit.edu;bcgsc.ca	37	X	100611053	100611053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTK	NM_000061	exon15	c.T1553C	p.L518P	.	.	72	5	70	0	.	1395
BTN3A3	10384	bcgsc.ca	37	6	26452393	26452393	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTN3A3	NM_006994	exon11	c.C1509A	p.T503T	.	.	110	6	92	0	.	90
BTRC	8945	bcgsc.ca	37	10	103294508	103294508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BTRC	NM_033637	exon10	c.G1188A	p.M396I	.	.	63	4	90	0	.	659
BUB1	699	bcgsc.ca	37	2	111416043	111416043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BUB1	NM_004336	exon13	c.A1460G	p.K487R	.	.	135	5	113	0	.	1060
BUB1	699	bcgsc.ca	37	2	111430415	111430415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	BUB1	NM_004336	exon4	c.T245C	p.L82P	.	.	57	4	59	0	.	1060
C10orf12	26148	ucsc.edu;bcgsc.ca	37	10	98741664	98741664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf12	NM_015652	exon1	c.C517A	p.H173N	.	.	20	4	49	0	.	92
C10orf137	26098	bcgsc.ca	37	10	127442372	127442372	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf137	NM_001202438	exon24	c.T3503C	p.L1168P	.	.	60	4	114	0	.	590
C10orf2	56652	ucsc.edu;bcgsc.ca	37	10	102750244	102750244	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf2	NM_021830	exon3	c.T1536C	p.H512H	.	.	24	4	53	0	.	69
C10orf35	219738	ucsc.edu;bcgsc.ca	37	10	71392795	71392795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf35	NM_145306	exon4	c.T346C	p.S116P	.	.	58	8	112	0	.	92
C10orf71	118461	bcgsc.ca	37	10	50533611	50533611	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C10orf71	NM_001135196	exon3	c.C3021A	p.P1007P	.	.	32	4	73	0	.	90
C11orf30	56946	bcgsc.ca	37	11	76207429	76207429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C11orf30	NM_020193	exon9	c.T1279C	p.S427P	.	.	70	4	51	0	.	232
C11orf35	256329	ucsc.edu;bcgsc.ca	37	11	557033	557033	+	Missense_Mutation	SNP	G	G	A	rs147157097	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C11orf35	NM_173573	exon8	c.C778T	p.R260W	.	.	35	4	58	0	G|1.000;A|0.000	69
C11orf63	79864	bcgsc.ca	37	11	122817436	122817436	+	Missense_Mutation	SNP	A	A	G	rs201541489		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C11orf63	NM_024806	exon6	c.A1865G	p.N622S	.	.	66	4	139	2	.	93
C12orf56	115749	ucsc.edu;bcgsc.ca	37	12	64661044	64661044	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C12orf56	NM_001170633	exon13	c.G1788A	p.L596L	.	.	33	4	31	0	.	68
C14orf93	60686	bcgsc.ca	37	14	23459275	23459275	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C14orf93	NM_021944	exon4	c.G980T	p.S327I	.	.	60	4	79	0	.	91
C16orf78	123970	bcgsc.ca	37	16	49411732	49411732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C16orf78	NM_144602	exon2	c.A241G	p.N81D	.	.	63	4	123	2	.	90
C16orf96	342346	bcgsc.ca	37	16	4642335	4642335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145011	exon11	c.C2741T	p.S914F	.	.	57	4	59	0	.	.
C19orf21	126353	bcgsc.ca	37	19	758667	758667	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C19orf21	NM_173481	exon2	c.T1721C	p.F574S	.	.	68	5	76	0	.	91
C1orf141	400757	bcgsc.ca	37	1	67560943	67560943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C1orf141	NM_001276351	exon7	c.C578A	p.P193Q	.	.	171	6	144	0	.	91
C1orf68	100129271	bcgsc.ca	37	1	152692445	152692445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C1orf68	NM_001024679	exon1	c.A448G	p.S150G	.	.	122	5	119	0	.	69
C1orf87	127795	bcgsc.ca	37	1	60506696	60506696	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C1orf87	NM_152377	exon4	c.A450G	p.E150E	.	.	80	5	100	0	.	154
C2orf47	79568	bcgsc.ca	37	2	200826605	200826605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C2orf47	NM_024520	exon5	c.G751T	p.G251W	.	.	179	6	177	0	.	90
C2orf71	388939	bcgsc.ca	37	2	29294611	29294611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C2orf71	NM_001029883	exon1	c.G2517T	p.M839I	.	.	55	4	47	0	.	91
C3orf33	285315	bcgsc.ca	37	3	155493510	155493510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C3orf33	NM_173657	exon4	c.C173A	p.P58H	.	.	141	5	111	0	.	90
C3orf62	375341	bcgsc.ca	37	3	49314086	49314086	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C3orf62	NM_198562	exon1	c.T220C	p.S74P	.	.	87	4	64	1	.	90
C5	727	bcgsc.ca	37	9	123725971	123725971	+	Silent	SNP	C	C	A	rs12237774	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C5	NM_001735	exon34	c.G4266T	p.A1422A	.	.	315	11	182	0	C|0.914;T|0.086	92
C5orf34	375444	bcgsc.ca	37	5	43506022	43506022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C5orf34	NM_198566	exon4	c.C760A	p.P254T	.	.	71	5	87	0	.	153
C5orf34	375444	bcgsc.ca	37	5	43506394	43506394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C5orf34	NM_198566	exon4	c.G388T	p.G130C	.	.	87	4	79	0	.	153
C5orf42	65250	bcgsc.ca	37	5	37244480	37244480	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C5orf42	NM_023073	exon5	c.T567C	p.N189N	.	.	67	4	49	0	.	94
C5orf54	63920	bcgsc.ca	37	5	159822438	159822438	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C5orf54	NM_022090	exon2	c.G60T	p.T20T	.	.	74	4	60	0	.	91
C6orf170	221322	bcgsc.ca	37	6	121615764	121615764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C6orf170	NM_152730	exon11	c.T1183C	p.C395R	.	.	199	6	152	0	.	92
C6orf223	221416	broad.mit.edu	37	6	43970811	43970811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C6orf223	NM_153246	exon4	c.C677A	p.P226Q	.	.	49	6	44	1	.	68
C7orf62	219557	bcgsc.ca	37	7	88424019	88424019	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C7orf62	NM_152706	exon2	c.C238T	p.H80Y	.	.	129	5	113	0	.	91
C9orf117	286207	bcgsc.ca	37	9	130471850	130471850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C9orf117	NM_001012502	exon2	c.A311G	p.Q104R	.	.	105	5	83	0	.	90
C9orf3	84909	bcgsc.ca	37	9	97522119	97522119	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C9orf3	NM_001193331	exon2	c.C54T	p.T18T	.	.	138	6	73	0	.	91
C9orf84	158401	bcgsc.ca	37	9	114462307	114462307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C9orf84	NM_173521	exon22	c.C2918T	p.T973I	.	.	154	5	61	0	.	92
C9orf96	169436	bcgsc.ca	37	9	136253267	136253267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	C9orf96	NM_153710	exon5	c.A331G	p.N111D	.	.	136	6	105	0	.	334
CA8	767	bcgsc.ca	37	8	61135248	61135248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CA8	NM_004056	exon7	c.G698T	p.W233L	.	.	72	4	77	0	.	90
CAB39L	81617	bcgsc.ca	37	13	49918348	49918348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAB39L	NM_030925	exon6	c.G591T	p.L197F	.	.	112	5	129	0	.	90
CABIN1	23523	bcgsc.ca	37	22	24459431	24459431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CABIN1	NM_001199281	exon14	c.G1706T	p.R569L	.	.	97	5	132	0	.	94
CACHD1	57685	bcgsc.ca	37	1	65124401	65124401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACHD1	NM_020925	exon13	c.C1643A	p.S548Y	.	.	74	6	45	0	.	92
CACNA1A	773	broad.mit.edu;bcgsc.ca	37	19	13476249	13476249	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA1A	NM_001127221	exon5	c.G666T	p.A222A	.	.	83	6	85	2	.	67
CACNA1D	776	bcgsc.ca	37	3	53783403	53783403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA1D	NM_000720	exon28	c.C3483A	p.F1161L	.	.	139	5	133	0	.	100
CACNA1S	779	ucsc.edu	37	1	201058492	201058492	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA1S	NM_000069	exon6	c.G794A	p.W265X	.	.	35	5	55	0	.	94
CACNA2D3	55799	bcgsc.ca	37	3	54872665	54872665	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNA2D3	NM_018398	exon16	c.C1541A	p.P514H	.	.	76	4	66	0	.	138
CACNB2	783	bcgsc.ca	37	10	18828450	18828450	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CACNB2	NM_201596	exon14	c.A1780G	p.T594A	.	.	79	4	74	1	.	154
CALB1	793	bcgsc.ca	37	8	91078165	91078165	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALB1	NM_004929	exon6	c.T411C	p.T137T	.	.	78	4	67	0	.	91
CALB1	793	ucsc.edu	37	8	91094325	91094325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALB1	NM_004929	exon2	c.G85A	p.G29S	.	.	38	4	29	0	.	91
CALCR	799	broad.mit.edu;bcgsc.ca	37	7	93072939	93072939	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALCR	NM_001164737	exon11	c.G881T	p.R294L	.	.	84	6	68	0	.	664
CALR3	125972	bcgsc.ca	37	19	16593273	16593273	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALR3	NM_145046	exon7	c.G906A	p.L302L	.	.	74	4	89	1	.	90
CALR3	125972	bcgsc.ca	37	19	16596053	16596053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CALR3	NM_145046	exon4	c.G413T	p.G138V	.	.	66	5	59	1	.	90
CAMK2D	817	bcgsc.ca	37	4	114438771	114438771	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAMK2D	NM_172128	exon9	c.G644T	p.W215L	.	.	80	5	75	0	.	334
CAMK2G	818	bcgsc.ca	37	10	75577242	75577242	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAMK2G	NM_172171	exon18	c.C1338A	p.A446A	.	.	64	4	114	0	.	358
CAMKV	79012	bcgsc.ca	37	3	49897669	49897669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAMKV	NM_024046	exon10	c.G877T	p.D293Y	.	.	52	4	63	0	.	613
CAMSAP3	57662	bcgsc.ca	37	19	7671236	7671236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_020902	exon3	c.C482T	p.A161V	.	.	30	4	49	0	.	.
CANX	821	bcgsc.ca	37	5	179133281	179133281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CANX	NM_001746	exon3	c.C194T	p.P65L	.	.	48	4	47	0	.	90
CANX	821	bcgsc.ca	37	5	179149894	179149894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CANX	NM_001746	exon11	c.G1272T	p.L424F	.	.	213	8	204	0	.	90
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	17463259	17463259	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAP2	NM_006366	exon4	c.G255A	p.Q85Q	.	.	64	34	49	0	.	91
CAPNS2	84290	ucsc.edu;bcgsc.ca	37	16	55601229	55601229	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032330	exon1	c.A561G	p.E187E	.	.	44	4	64	0	.	.
CAPRIN2	65981	bcgsc.ca	37	12	30906352	30906352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CAPRIN2	NM_023925	exon1	c.C346A	p.Q116K	.	.	82	5	72	0	.	92
CASC5	57082	bcgsc.ca	37	15	40913459	40913459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CASC5	NM_170589	exon11	c.A1075G	p.T359A	.	.	87	4	88	0	.	660
CASC5	57082	bcgsc.ca	37	15	40915959	40915959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CASC5	NM_170589	exon11	c.T3575C	p.V1192A	.	.	69	4	50	1	.	660
CASK	8573	bcgsc.ca	37	X	41524580	41524580	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CASK	NM_001126054	exon7	c.T658A	p.Y220N	.	.	54	4	82	0	.	616
CATSPER1	117144	ucsc.edu;bcgsc.ca	37	11	65786337	65786337	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CATSPER1	NM_053054	exon10	c.A2162G	p.K721R	.	.	30	4	27	0	.	92
CATSPERD	257062	bcgsc.ca	37	19	5748247	5748247	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152784	exon10	c.C885A	p.T295T	.	.	67	6	59	0	.	.
CBL	867	bcgsc.ca	37	11	119145545	119145545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CBL	NM_005188	exon5	c.T751C	p.W251R	.	.	69	4	116	0	.	4020
CBLB	868	bcgsc.ca	37	3	105459424	105459424	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CBLB	NM_170662	exon7	c.T897C	p.Y299Y	.	.	59	4	50	0	.	849
CCDC111	201973	bcgsc.ca	37	4	185580559	185580559	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC111	NM_152683	exon4	c.C246A	p.T82T	.	.	120	5	105	0	.	90
CCDC127	133957	bcgsc.ca	37	5	206064	206064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC127	NM_145265	exon3	c.G131T	p.W44L	.	.	125	6	94	0	.	68
CCDC13	152206	ucsc.edu;bcgsc.ca	37	3	42750572	42750572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC13	NM_144719	exon16	c.G2048T	p.R683L	.	.	34	5	62	0	.	91
CCDC135	84229	ucsc.edu	37	16	57741538	57741538	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC135	NM_032269	exon7	c.G1025A	p.W342X	.	.	45	4	78	0	.	90
CCDC169-SOHLH2	100526761	bcgsc.ca	37	13	36748652	36748652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001198910	exon13	c.C1073A	p.P358H	.	.	125	6	101	0	.	.
CCDC170	80129	bcgsc.ca	37	6	151939095	151939095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_025059	exon11	c.G1961T	p.R654M	.	.	56	4	48	0	.	.
CCDC180	0	bcgsc.ca	37	9	100076743	100076743	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_020893	exon6	c.A660G	p.E220E	.	.	99	5	52	0	.	.
CCDC28A	25901	bcgsc.ca	37	6	139101044	139101044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC28A	NM_015439	exon3	c.G514A	p.V172I	.	.	62	4	59	0	.	90
CCDC30	728621	bcgsc.ca	37	1	43119074	43119074	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC30	NM_001080850	exon15	c.T2101C	p.S701P	.	.	227	7	137	1	.	90
CCDC42	146849	bcgsc.ca	37	17	8647424	8647424	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC42	NM_144681	exon2	c.G162A	p.M54I	.	.	57	4	74	0	.	91
CCDC53	51019	bcgsc.ca	37	12	102433710	102433710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_016053	exon5	c.C371T	p.A124V	.	.	200	6	174	0	.	.
CCDC65	85478	bcgsc.ca	37	12	49312083	49312083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC65	NM_033124	exon5	c.G635T	p.R212I	.	.	60	5	60	0	.	92
CCDC66	285331	bcgsc.ca	37	3	56605286	56605286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC66	NM_001141947	exon7	c.G892T	p.D298Y	.	.	311	8	176	1	.	135
CCDC79	283847	bcgsc.ca	37	16	66806605	66806605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136505	exon13	c.G1159A	p.E387K	.	.	77	4	132	0	.	.
CCDC80	151887	bcgsc.ca	37	3	112337938	112337938	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC80	NM_199511	exon4	c.C2049T	p.P683P	.	.	77	4	59	0	.	92
CCDC81	60494	bcgsc.ca	37	11	86131095	86131095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC81	NM_001156474	exon14	c.G1817T	p.R606L	.	.	66	6	76	0	.	91
CCDC88A	55704	bcgsc.ca	37	2	55573324	55573324	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCDC88A	NM_018084	exon10	c.A1028G	p.K343R	.	.	220	7	159	0	.	94
CCNB1	891	bcgsc.ca	37	5	68464067	68464067	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCNB1	NM_031966	exon3	c.C260A	p.P87H	.	.	64	4	96	1	.	650
CCNC	892	bcgsc.ca	37	6	100006425	100006425	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCNC	NM_005190	exon6	c.295-1G>T	.	.	.	110	5	74	1	.	226
CCNE2	9134	bcgsc.ca	37	8	95905091	95905091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCNE2	NM_057749	exon5	c.G272T	p.R91I	.	.	182	6	132	0	.	414
CCNJL	79616	bcgsc.ca	37	5	159686513	159686513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCNJL	NM_024565	exon5	c.G690T	p.K230N	.	.	69	4	82	0	.	90
CCPG1	9236	bcgsc.ca	37	15	55652286	55652286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCPG1	NM_020739	exon8	c.C1685A	p.P562Q	.	.	264	7	203	0	.	91
CCR2	729230	bcgsc.ca	37	3	46399032	46399032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCR2	NM_001123041	exon2	c.C14A	p.S5Y	.	.	74	4	69	0	.	568
CCR7	1236	ucsc.edu;bcgsc.ca	37	17	38715178	38715178	+	Missense_Mutation	SNP	G	G	T	rs193282140	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCR7	NM_001838	exon2	c.C27A	p.S9R	.	.	39	5	61	0	G|0.999;A|0.001	659
CCSER2	54462	bcgsc.ca	37	10	86131991	86131991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_018999	exon2	c.G1183T	p.D395Y	.	.	59	7	73	0	.	.
CCT3	7203	bcgsc.ca	37	1	156280741	156280741	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCT3	NM_005998	exon12	c.G1401T	p.R467R	.	.	69	4	54	0	.	92
CCZ1	51622	broad.mit.edu	37	7	5944792	5944792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CCZ1	NM_015622	exon7	c.C590A	p.P197Q	.	.	633	7	557	0	.	44
CD1E	913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158325802	158325802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CD1E	NM_030893	exon4	c.G811A	p.A271T	.	.	128	41	92	0	.	93
CD2	914	bcgsc.ca	37	1	117307220	117307220	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CD2	NM_001767	exon4	c.G728A	p.R243Q	.	.	54	5	70	0	.	153
CD46	4179	bcgsc.ca	37	1	207930897	207930897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CD46	NM_172352	exon3	c.C299T	p.P100L	.	.	22	3	33	0	.	963
CDC16	8881	bcgsc.ca	37	13	115007746	115007746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDC16	NM_003903	exon6	c.G532T	p.A178S	.	.	76	4	67	0	.	226
CDC20B	166979	bcgsc.ca	37	5	54420696	54420696	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDC20B	NM_001170402	exon9	c.C1150A	p.H384N	.	.	66	4	64	0	.	90
CDH11	1009	ucsc.edu	37	16	65032696	65032696	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH11	NM_001797	exon4	c.G292T	p.G98X	.	.	47	5	80	0	.	852
CDH17	1015	bcgsc.ca	37	8	95178112	95178112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH17	NM_004063	exon10	c.A1159G	p.K387E	.	.	149	5	172	0	.	96
CDH1	999	bcgsc.ca	37	16	68847266	68847266	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH1	NM_004360	exon9	c.G1188A	p.L396L	.	.	51	4	68	0	.	3377
CDH23	64072	bcgsc.ca	37	10	73559375	73559375	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH23	NM_022124	exon50	c.A7351G	p.N2451D	.	.	10	4	39	0	.	563
CDH23	64072	ucsc.edu	37	10	73556911	73556911	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH23	NM_022124	exon47	c.G6763T	p.E2255X	.	.	20	4	44	0	.	563
CDH26	60437	bcgsc.ca	37	20	58560082	58560082	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CDH26	NM_177980	exon7	c.C735A	p.I245I	.	.	73	4	52	0	.	93
CELF3	11189	ucsc.edu	37	1	151687146	151687146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELF3	NM_007185	exon2	c.C152T	p.A51V	.	.	46	4	53	0	.	91
CELF3	11189	ucsc.edu;bcgsc.ca	37	1	151681762	151681762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELF3	NM_007185	exon4	c.A340G	p.M114V	.	.	43	5	30	0	.	91
CELSR2	1952	bcgsc.ca	37	1	109804212	109804212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELSR2	NM_001408	exon4	c.A4259G	p.E1420G	.	.	69	4	91	0	.	526
CELSR3	1951	bcgsc.ca	37	3	48698245	48698245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CELSR3	NM_001407	exon1	c.T1823C	p.L608P	.	.	84	6	92	0	.	523
CENPC1	1060	bcgsc.ca	37	4	68383941	68383941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CENPC1	NM_001812	exon7	c.C763A	p.Q255K	.	.	267	7	211	0	.	205
CENPM	79019	bcgsc.ca	37	22	42339651	42339651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CENPM	NM_024053	exon5	c.A365G	p.H122R	.	.	65	4	76	0	.	90
CEP152	22995	bcgsc.ca	37	15	49061227	49061227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP152	NM_014985	exon14	c.T1834C	p.S612P	.	.	105	6	94	0	.	70
CEP192	55125	bcgsc.ca	37	18	13059213	13059213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP192	NM_032142	exon21	c.T4390C	p.S1464P	.	.	71	4	54	0	.	27
CEP192	55125	bcgsc.ca	37	18	13092503	13092503	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP192	NM_032142	exon34	c.C6231A	p.S2077S	.	.	79	5	57	0	.	27
CEP290	80184	bcgsc.ca	37	12	88500771	88500771	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP290	NM_025114	exon25	c.2586+2T>A	.	.	.	165	5	133	0	.	96
CEP350	9857	ucsc.edu	37	1	179965687	179965687	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP350	NM_014810	exon6	c.396-1G>T	.	.	.	24	4	14	0	.	26
CEP41	95681	bcgsc.ca	37	7	130041755	130041755	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_018718	exon8	c.A609G	p.T203T	.	.	118	5	90	0	.	.
CEP70	80321	bcgsc.ca	37	3	138227380	138227380	+	Missense_Mutation	SNP	C	C	A	rs190147976	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP70	NM_024491	exon12	c.G951T	p.Q317H	.	.	154	5	111	0	C|0.999;T|0.000	69
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219253	138219253	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CEP70	NM_024491	exon15	c.C1525T	p.L509F	.	.	196	76	120	0	.	69
CERKL	375298	bcgsc.ca	37	2	182409481	182409481	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CERKL	NM_001030311	exon12	c.T1389C	p.T463T	.	.	227	8	159	0	.	228
CERKL	375298	ucsc.edu;bcgsc.ca	37	2	182423419	182423419	+	Missense_Mutation	SNP	C	C	T	rs78484040	by1000genomes	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CERKL	NM_001030311	exon6	c.G772A	p.G258R	.	.	38	4	32	0	C|0.999;T|0.000	228
CES1P2	0	bcgsc.ca	37	16	55764349	55764349	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	7	3	23	0	.	.
CFHR5	81494	ucsc.edu;bcgsc.ca	37	1	196965240	196965240	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CFHR5	NM_030787	exon6	c.C879A	p.V293V	.	.	38	4	43	0	.	154
CHD1	1105	bcgsc.ca	37	5	98204305	98204305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD1	NM_001270	exon30	c.C4142A	p.S1381Y	.	.	88	6	63	0	.	274
CHD2	1106	bcgsc.ca	37	15	93444474	93444474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD2	NM_001042572	exon2	c.A7G	p.R3G	.	.	293	8	246	0	.	229
CHD2	1106	bcgsc.ca	37	15	93485103	93485103	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD2	NM_001042572	exon8	c.G744T	p.M248I	.	.	140	7	111	0	.	229
CHD5	26038	bcgsc.ca	37	1	6188127	6188127	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD5	NM_015557	exon25	c.G3882T	p.V1294V	.	.	68	4	68	0	.	719
CHD6	84181	bcgsc.ca	37	20	40179973	40179973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD6	NM_032221	exon2	c.A4G	p.K2E	.	.	77	4	47	0	.	238
CHD8	57680	ucsc.edu;bcgsc.ca	37	14	21859752	21859752	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHD8	NM_001170629	exon35	c.A6935G	p.E2312G	.	.	53	4	54	0	.	277
CHDH	55349	bcgsc.ca	37	3	53854599	53854599	+	Missense_Mutation	SNP	T	T	A	rs200830769	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHDH	NM_018397	exon6	c.A1022T	p.Y341F	.	.	66	4	73	0	.	91
CHN2	1124	ucsc.edu	37	7	29440435	29440435	+	Silent	SNP	G	G	T	rs149070963	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHN2	NM_004067	exon6	c.G567T	p.A189A	.	.	39	4	42	0	G|0.999;A|0.001	229
CHORDC1	26973	bcgsc.ca	37	11	89938722	89938722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHORDC1	NM_012124	exon8	c.G575T	p.W192L	.	.	137	5	205	0	.	90
CHPT1	56994	bcgsc.ca	37	12	102107916	102107916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHPT1	NM_020244	exon2	c.C322A	p.Q108K	.	.	116	6	114	1	.	90
CHST14	113189	ucsc.edu	37	15	40764449	40764449	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CHST14	NM_130468	exon1	c.C1037A	p.A346D	.	.	34	4	50	0	.	90
CKAP5	9793	bcgsc.ca	37	11	46789190	46789190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CKAP5	NM_001008938	exon27	c.A3346G	p.S1116G	.	.	95	4	61	0	.	92
CKAP5	9793	bcgsc.ca	37	11	46842736	46842736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CKAP5	NM_001008938	exon2	c.G47T	p.C16F	.	.	73	4	45	0	.	92
CLCN7	1186	ucsc.edu;bcgsc.ca	37	16	1510868	1510868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLCN7	NM_001287	exon5	c.G433T	p.D145Y	.	.	38	4	56	1	.	92
CLEC2D	29121	bcgsc.ca	37	12	9833628	9833628	+	Silent	SNP	C	C	T	rs3764021	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLEC2D	NM_001004419	exon2	c.C171T	p.S57S	.	.	76	4	45	0	C|0.519;T|0.481	90
CLEC3A	10143	bcgsc.ca	37	16	78056572	78056572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLEC3A	NM_005752	exon1	c.C76A	p.L26M	.	.	18	3	65	0	.	90
CLHC1	130162	bcgsc.ca	37	2	55449388	55449388	+	Silent	SNP	G	G	T	rs149934154		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152385	exon3	c.C160A	p.R54R	.	.	91	5	86	0	G|1.000;T|0.000	.
CLIP2	7461	ucsc.edu;bcgsc.ca	37	7	73753180	73753180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLIP2	NM_032421	exon3	c.C524A	p.T175K	.	.	24	4	28	0	.	93
CLLU1	574028	bcgsc.ca	37	12	92818727	92818727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLLU1	NM_001025233	exon1	c.G271T	p.G91C	.	.	113	6	91	0	.	91
CLNS1A	1207	bcgsc.ca	37	11	77340933	77340933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLNS1A	NM_001293	exon2	c.G137T	p.W46L	.	.	26	5	32	0	.	91
CLOCK	9575	bcgsc.ca	37	4	56315598	56315598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CLOCK	NM_004898	exon17	c.A1414G	p.K472E	.	.	139	6	143	1	.	515
CMYA5	202333	bcgsc.ca	37	5	79028509	79028509	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CMYA5	NM_153610	exon2	c.C3921A	p.S1307S	.	.	84	4	85	0	.	77
CNEP1R1	255919	bcgsc.ca	37	16	50063676	50063676	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_153261	exon4	c.C189A	p.A63A	.	.	120	6	197	0	.	.
CNFN	84518	bcgsc.ca	37	19	42891572	42891572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNFN	NM_032488	exon3	c.G169T	p.G57C	.	.	23	4	49	0	.	90
CNGB3	54714	bcgsc.ca	37	8	87645079	87645079	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNGB3	NM_019098	exon11	c.C1221A	p.T407T	.	.	193	6	163	0	.	93
CNIH	10175	bcgsc.ca	37	14	54897071	54897071	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNIH	NM_005776	exon4	c.C315A	p.T105T	.	.	71	4	88	0	.	90
CNKSR2	22866	bcgsc.ca	37	X	21667116	21667116	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNKSR2	NM_014927	exon21	c.C2860A	p.R954R	.	.	93	4	139	1	.	625
CNN1	1264	bcgsc.ca	37	19	11657760	11657760	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNN1	NM_001299	exon4	c.C366A	p.S122S	.	.	54	4	65	0	.	90
CNNM2	54805	bcgsc.ca	37	10	104814204	104814204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNNM2	NM_199076	exon3	c.G1884T	p.M628I	.	.	38	4	55	0	.	515
CNNM4	26504	bcgsc.ca	37	2	97462819	97462819	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNNM4	NM_020184	exon2	c.G1473T	p.L491L	.	.	53	4	40	0	.	154
CNR2	1269	bcgsc.ca	37	1	24201790	24201790	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNR2	NM_001841	exon2	c.C318T	p.F106F	.	.	51	4	67	0	.	228
CNTN5	53942	bcgsc.ca	37	11	99715986	99715986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNTN5	NM_001243270	exon5	c.A569G	p.Q190R	.	.	22	3	47	0	.	366
CNTRL	11064	bcgsc.ca	37	9	123916998	123916998	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CNTRL	NM_007018	exon25	c.4173-1G>T	.	.	.	68	4	56	0	.	661
COASY	80347	ucsc.edu;bcgsc.ca	37	17	40717936	40717936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COASY	NM_001042532	exon11	c.T1732C	p.W578R	.	.	38	4	51	1	.	115
COL11A1	1301	bcgsc.ca	37	1	103348793	103348793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL11A1	NM_080629	exon64	c.G4969T	p.G1657C	.	.	102	7	90	0	.	586
COL11A1	1301	bcgsc.ca	37	1	103449704	103449704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL11A1	NM_080629	exon31	c.A2582G	p.Q861R	.	.	67	4	38	0	.	586
COL12A1	1303	bcgsc.ca	37	6	75893163	75893163	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL12A1	NM_004370	exon10	c.C1494A	p.T498T	.	.	79	4	58	0	.	142
COL14A1	7373	bcgsc.ca	37	8	121243772	121243772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL14A1	NM_021110	exon19	c.G2264T	p.W755L	.	.	126	5	79	0	.	543
COL15A1	1306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101778304	101778304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL15A1	NM_001855	exon11	c.C1550T	p.P517L	.	.	51	30	34	0	.	96
COL17A1	1308	bcgsc.ca	37	10	105793963	105793963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL17A1	NM_000494	exon52	c.C3896T	p.S1299L	.	.	18	4	50	0	.	95
COL22A1	169044	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	139736874	139736874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL22A1	NM_152888	exon25	c.G2231A	p.G744E	.	.	25	11	19	0	.	103
COL24A1	255631	bcgsc.ca	37	1	86529418	86529418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL24A1	NM_152890	exon8	c.C1732A	p.P578T	.	.	139	5	147	0	.	94
COL25A1	84570	bcgsc.ca	37	4	109863370	109863370	+	Missense_Mutation	SNP	C	C	T	rs17531474	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL25A1	NM_001256074	exon7	c.G547A	p.V183I	.	.	59	5	57	0	C|0.940;T|0.060	92
COL4A3BP	10087	bcgsc.ca	37	5	74722220	74722220	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL4A3BP	NM_001130105	exon5	c.T816C	p.S272S	.	.	106	5	90	0	.	226
COL4A5	1287	bcgsc.ca	37	X	107920796	107920796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL4A5	NM_000495	exon42	c.A3857G	p.N1286S	.	.	82	4	93	0	.	133
COL5A2	1290	bcgsc.ca	37	2	189948708	189948708	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL5A2	NM_000393	exon13	c.852+2T>C	.	.	.	66	4	61	0	.	92
COL6A3	1293	bcgsc.ca	37	2	238287741	238287741	+	Missense_Mutation	SNP	C	C	A	rs201031137		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COL6A3	NM_004369	exon6	c.G2035T	p.G679C	.	.	111	7	114	3	C|0.999;A|0.000	526
COMMD8	54951	bcgsc.ca	37	4	47458711	47458711	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COMMD8	NM_017845	exon3	c.T258C	p.H86H	.	.	75	4	109	0	.	90
COMMD9	29099	bcgsc.ca	37	11	36296214	36296214	+	Silent	SNP	G	G	T	rs146821553	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COMMD9	NM_014186	exon6	c.C565A	p.R189R	.	.	95	5	86	0	G|1.000;A|0.000	91
COPG2	26958	bcgsc.ca	37	7	130352364	130352364	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	38	4	39	0	.	.
COQ9	57017	bcgsc.ca	37	16	57486724	57486724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	COQ9	NM_020312	exon3	c.A254G	p.Q85R	.	.	36	4	81	0	.	135
CORO2B	10391	ucsc.edu;bcgsc.ca	37	15	68937510	68937510	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CORO2B	NM_006091	exon2	c.T27C	p.R9R	.	.	43	5	39	0	.	158
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101487248	101487248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	COX15,NS,carcinoma,-2	COX15	NM_004376	exon3	c.G345T	p.E115D	.	.	38	4	61	0	.	227
CPA2	1358	ucsc.edu	37	7	129912944	129912944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CPA2	NM_001869	exon5	c.C413T	p.A138V	.	.	38	4	19	0	.	91
CPAMD8	27151	ucsc.edu	37	19	17049218	17049218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CPAMD8	NM_015692	exon23	c.C2973A	p.F991L	.	.	26	4	18	0	.	141
CPNE3	8895	bcgsc.ca	37	8	87568368	87568368	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CPNE3	NM_003909	exon16	c.C1293A	p.I431I	.	.	143	7	113	0	.	117
CPNE9	151835	bcgsc.ca	37	3	9756629	9756629	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CPNE9	.	.	.	.	.	.	53	4	56	0	.	70
CR1	1378	broad.mit.edu	37	1	207787831	207787831	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CR1	NM_000651	exon40	c.G6658T	p.E2220X	.	.	77	8	138	1	.	93
CR2	1380	bcgsc.ca	37	1	207653367	207653367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CR2	NM_001006658	exon18	c.A3157T	p.T1053S	.	.	91	6	179	1	.	232
CRB1	23418	ucsc.edu	37	1	197404300	197404300	+	Nonsense_Mutation	SNP	G	G	T	rs62636275	bycluster;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CRB1	NM_201253	exon9	c.G3307T	p.G1103X	.	.	34	4	62	0	.	161
CREB5	9586	bcgsc.ca	37	7	28534560	28534560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CREB5	NM_182898	exon3	c.C112T	p.H38Y	.	.	171	6	149	0	.	92
CREBRF	153222	bcgsc.ca	37	5	172537674	172537674	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_153607	exon6	c.C1567A	p.R523R	.	.	64	6	69	0	.	.
CRLF3	51379	bcgsc.ca	37	17	29113020	29113020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CRLF3	NM_015986	exon7	c.G989T	p.R330I	.	.	68	4	48	0	.	90
CRY1	1407	bcgsc.ca	37	12	107395147	107395147	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CRY1	NM_004075	exon6	c.596-1G>T	.	.	.	118	5	99	0	.	93
CSF2RA	1438	bcgsc.ca	37	X	1401660	1401660	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CSF2RA	NM_172247	exon1	c.C64A	p.P22T	.	.	105	5	191	1	.	42
CSMD2	114784	bcgsc.ca	37	1	34070968	34070968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CSMD2	NM_052896	exon43	c.C6452A	p.P2151Q	.	.	99	5	98	0	.	103
CSPP1	79848	bcgsc.ca	37	8	68092149	68092149	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CSPP1	NM_024790	exon26	c.A3193T	p.S1065C	.	.	99	5	71	0	.	138
CSTF1	1477	bcgsc.ca	37	20	54972347	54972347	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CSTF1	NM_001033522	exon3	c.T254C	p.F85S	.	.	70	4	61	0	.	90
CSTF3	1479	bcgsc.ca	37	11	33163176	33163176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CSTF3	NM_001033505	exon3	c.T262C	p.C88R	.	.	101	4	69	0	.	90
CTAGE1	64693	bcgsc.ca	37	18	19997096	19997096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTAGE1	NM_172241	exon1	c.C679A	p.L227I	.	.	120	5	101	0	.	1
CTBS	1486	bcgsc.ca	37	1	85035733	85035733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTBS	NM_004388	exon3	c.G406T	p.D136Y	.	.	199	7	149	0	.	90
CTLA4	1493	bcgsc.ca	37	2	204735460	204735460	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTLA4	NM_005214	exon2	c.A261G	p.A87A	.	.	77	5	96	0	.	90
CTNNA2	1496	bcgsc.ca	37	2	80646679	80646679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTNNA2	NM_001164883	exon9	c.A1243G	p.K415E	.	.	62	4	35	0	.	368
CTPS1	1503	bcgsc.ca	37	1	41450567	41450567	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001905	exon3	c.C241A	p.R81S	.	.	134	5	141	0	.	.
CTPS2	56474	bcgsc.ca	37	X	16627791	16627791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTPS2	NM_001144002	exon17	c.G1564T	p.G522C	.	.	74	4	117	0	.	228
CTSO	1519	bcgsc.ca	37	4	156858553	156858553	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSO	NM_001334	exon5	c.C635A	p.S212Y	.	.	202	6	182	0	.	90
CTSS	1520	broad.mit.edu;bcgsc.ca	37	1	150722588	150722588	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSS	NM_004079	exon6	c.A687G	p.E229E	.	.	75	7	46	0	.	90
CTSZ	1522	ucsc.edu;bcgsc.ca	37	20	57570753	57570753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CTSZ	NM_001336	exon6	c.A863G	p.Y288C	.	.	63	5	72	0	.	226
CTXN2	399697	bcgsc.ca	37	15	48493620	48493620	+	Silent	SNP	G	G	A	rs188833868	by1000genomes	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145668	exon2	c.G123A	p.L41L	.	.	242	8	238	0	G|0.999;A|0.001	.
CUL7	9820	bcgsc.ca	37	6	43016091	43016091	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CUL7	NM_001168370	exon8	c.C2294T	p.T765I	.	.	20	3	28	0	.	229
CWC22	57703	bcgsc.ca	37	2	180810068	180810068	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CWC22	NM_020943	exon20	c.C2515A	p.R839R	.	.	323	10	259	0	.	90
CWC22	57703	bcgsc.ca	37	2	180815459	180815459	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CWC22	NM_020943	exon19	c.G1920T	p.T640T	.	.	118	5	129	0	.	90
CWF19L2	143884	bcgsc.ca	37	11	107299997	107299997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CWF19L2	NM_152434	exon8	c.A961G	p.T321A	.	.	73	4	121	0	.	68
CXCR6	10663	bcgsc.ca	37	3	45988161	45988161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CXCR6	NM_006564	exon2	c.A188G	p.Q63R	.	.	182	6	231	0	.	658
CYFIP2	26999	bcgsc.ca	37	5	156757815	156757815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYFIP2	NM_001037332	exon20	c.C2222A	p.P741Q	.	.	132	11	115	1	.	22
CYLD	1540	bcgsc.ca	37	16	50785796	50785796	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYLD	NM_001042355	exon4	c.A786G	p.G262G	.	.	19	3	32	0	.	2444
CYP11B2	1585	bcgsc.ca	37	8	143993457	143993457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP11B2	NM_000498	exon9	c.T1451C	p.V484A	.	.	120	6	102	0	.	90
CYP2B7P1	1556	bcgsc.ca	37	19	41444894	41444894	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP2B7P1	.	.	.	.	.	.	71	4	54	0	.	70
CYP2C9	1559	bcgsc.ca	37	10	96701735	96701735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP2C9	NM_000771	exon2	c.A289G	p.R97G	.	.	131	5	267	2	.	96
CYP39A1	51302	bcgsc.ca	37	6	46620145	46620145	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP39A1	NM_016593	exon1	c.A175C	p.K59Q	.	.	70	4	46	0	.	91
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99247719	99247721	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	CYP3A5	NM_000777	exon12	c.1388_1390del	p.463_464del	.	.	172	69	192	0	.	90
DAB2	1601	bcgsc.ca	37	5	39382740	39382740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DAB2	NM_001343	exon10	c.A1321G	p.R441G	.	.	72	5	83	0	.	227
DAB2	1601	bcgsc.ca	37	5	39383175	39383175	+	Missense_Mutation	SNP	G	G	T	rs79344176	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DAB2	NM_001343	exon10	c.C886A	p.R296S	.	.	70	4	68	0	G|0.993;A|0.007	227
DBP	1628	bcgsc.ca	37	19	49136750	49136750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DBP	NM_001352	exon3	c.A713G	p.Q238R	.	.	196	7	250	1	.	90
DCAF4	26094	bcgsc.ca	37	14	73413858	73413858	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCAF4	NM_001163508	exon8	c.G687T	p.S229S	.	.	116	6	115	0	.	92
DCAF6	55827	bcgsc.ca	37	1	168037656	168037656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCAF6	NM_001198956	exon21	c.T2746C	p.S916P	.	.	164	8	96	0	.	516
DCDC1	341019	bcgsc.ca	37	11	31327782	31327782	+	Silent	SNP	G	G	T	rs148686927	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCDC1	NM_181807	exon5	c.C588A	p.T196T	.	.	130	5	111	0	G|0.999;T|0.001	91
DCDC2	51473	bcgsc.ca	37	6	24289098	24289098	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCDC2	NM_001195610	exon7	c.C741A	p.S247S	.	.	88	4	54	0	.	91
DCHS2	54798	bcgsc.ca	37	4	155163810	155163810	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCHS2	NM_017639	exon22	c.A5691G	p.A1897A	.	.	85	4	63	0	.	94
DCLRE1C	64421	bcgsc.ca	37	10	14950593	14950593	+	Silent	SNP	G	G	T	rs41300676	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DCLRE1C	NM_001033855	exon14	c.C1893A	p.P631P	.	.	352	10	321	0	G|0.996;A|0.004	228
DDB1	1642	bcgsc.ca	37	11	61070626	61070626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDB1	NM_001923	exon23	c.T2834C	p.I945T	.	.	71	4	64	0	.	661
DDC	1644	bcgsc.ca	37	7	50537810	50537810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDC	NM_001082971	exon12	c.G1101T	p.R367S	.	.	62	4	63	0	.	92
DDHD2	23259	bcgsc.ca	37	8	38110280	38110280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDHD2	NM_001164232	exon14	c.C1658T	p.P553L	.	.	150	6	91	0	.	91
DDX19A	55308	ucsc.edu	37	16	70400658	70400658	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX19A	NM_018332	exon9	c.C914A	p.T305N	.	.	38	4	93	0	.	180
DDX19B	11269	bcgsc.ca	37	16	70348857	70348857	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX19B	NM_001257172	exon3	c.A174G	p.K58K	.	.	49	4	82	0	.	226
DDX21	9188	ucsc.edu	37	10	70728834	70728834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX21	NM_004728	exon7	c.A1193G	p.D398G	.	.	42	4	62	1	.	228
DDX41	51428	ucsc.edu;bcgsc.ca	37	5	176939387	176939387	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX41	NM_016222	exon15	c.G1557T	p.R519R	.	.	25	4	40	0	.	226
DDX42	11325	bcgsc.ca	37	17	61885095	61885095	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX42	NM_203499	exon9	c.G858T	p.V286V	.	.	163	5	98	0	.	230
DDX52	11056	bcgsc.ca	37	17	35981282	35981282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX52	NM_007010	exon11	c.G1391T	p.W464L	.	.	127	7	98	0	.	228
DDX55	57696	bcgsc.ca	37	12	124101090	124101090	+	Missense_Mutation	SNP	G	G	T	rs201680992	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DDX55	NM_020936	exon10	c.G989T	p.R330L	.	.	178	6	134	0	.	227
DEC1	50514	bcgsc.ca	37	9	118138990	118138990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEC1	NM_017418	exon5	c.G9T	p.M3I	.	.	80	4	48	0	.	69
DEF6	50619	ucsc.edu;bcgsc.ca	37	6	35289121	35289121	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEF6	NM_022047	exon11	c.G1830T	p.G610G	.	.	29	4	41	0	.	227
DEFA6	1671	ucsc.edu;bcgsc.ca	37	8	6782381	6782381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DEFA6	NM_001926	exon2	c.T262C	p.C88R	.	.	52	5	53	0	.	90
DENND4A	10260	bcgsc.ca	37	15	65983197	65983197	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DENND4A	NM_001144823	exon23	c.G3732A	p.R1244R	.	.	66	4	46	0	.	229
DENND4C	55667	broad.mit.edu;bcgsc.ca	37	9	19360349	19360349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DENND4C	NM_017925	exon28	c.G5121T	p.Q1707H	.	.	168	8	117	1	.	92
DENND5B	160518	bcgsc.ca	37	12	31605177	31605177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DENND5B	NM_144973	exon5	c.C1326A	p.I442I	.	.	77	4	73	0	.	24
DERA	51071	bcgsc.ca	37	12	16185531	16185531	+	Silent	SNP	G	G	T	rs200029512	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015954	exon7	c.G693T	p.P231P	.	.	96	9	79	0	G|0.999;A|0.000	.
DET1	55070	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	89074867	89074867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DET1	NM_017996	exon3	c.C103T	p.R35C	.	.	44	24	60	0	.	227
DGCR8	54487	bcgsc.ca	37	22	20077601	20077601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DGCR8	NM_001190326	exon5	c.G1126A	p.V376M	.	.	57	4	80	0	.	90
DGKB	1607	bcgsc.ca	37	7	14653013	14653013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DGKB	NM_145695	exon15	c.C1313A	p.P438Q	.	.	148	5	118	0	.	276
DGKI	9162	bcgsc.ca	37	7	137257546	137257546	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DGKI	NM_004717	exon18	c.G1800T	p.L600L	.	.	57	4	63	0	.	228
DHODH	1723	ucsc.edu;bcgsc.ca	37	16	72045982	72045982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHODH	NM_001361	exon2	c.G55A	p.G19R	.	.	25	4	37	0	.	227
DHPS	1725	bcgsc.ca	37	19	12792433	12792433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHPS	NM_001930	exon1	c.G148T	p.G50C	.	.	35	4	39	0	.	90
DHRS12	79758	bcgsc.ca	37	13	52348126	52348126	+	Silent	SNP	G	G	T	rs140617753	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHRS12	NM_001270424	exon7	c.C555A	p.T185T	.	.	76	5	87	1	G|1.000;A|0.000	90
DHRS12	79758	bcgsc.ca	37	13	52364147	52364147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHRS12	NM_001270424	exon5	c.G448T	p.G150C	.	.	64	4	46	0	.	90
DHX38	9785	ucsc.edu;bcgsc.ca	37	16	72142233	72142233	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX38	NM_014003	exon22	c.C3072A	p.S1024S	.	.	40	6	68	0	.	227
DHX40	79665	bcgsc.ca	37	17	57682822	57682822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX40	NM_024612	exon17	c.A1987G	p.T663A	.	.	124	5	60	0	.	226
DHX57	90957	bcgsc.ca	37	2	39075413	39075413	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX57	NM_198963	exon10	c.C2162A	p.P721Q	.	.	309	9	308	2	.	228
DHX58	79132	bcgsc.ca	37	17	40255629	40255629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX58	NM_024119	exon12	c.T1751C	p.F584S	.	.	41	4	49	1	.	90
DHX9	1660	ucsc.edu;bcgsc.ca	37	1	182849641	182849641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DHX9	NM_001357	exon22	c.C2522T	p.A841V	.	.	40	5	79	0	.	92
DIAPH2	1730	bcgsc.ca	37	X	96192322	96192322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIAPH2	NM_007309	exon11	c.C1180A	p.R394S	.	.	394	11	320	1	.	133
DICER1	23405	bcgsc.ca	37	14	95573995	95573995	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DICER1	NM_030621	exon18	c.A2754G	p.T918T	.	.	242	9	146	0	.	961
DIRC2	84925	bcgsc.ca	37	3	122514261	122514261	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIRC2	NM_032839	exon1	c.C222T	p.P74P	.	.	30	4	57	0	.	90
DIRC2	84925	bcgsc.ca	37	3	122578976	122578976	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIRC2	NM_032839	exon7	c.G1065T	p.S355S	.	.	169	6	127	1	.	90
DIS3L	115752	bcgsc.ca	37	15	66606399	66606399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIS3L	NM_001143688	exon6	c.A758G	p.H253R	.	.	161	5	126	0	.	92
DIS3L	115752	broad.mit.edu	37	15	66621560	66621560	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIS3L	NM_001143688	exon14	c.T2358C	p.G786G	.	.	127	7	94	1	.	92
DISP2	85455	ucsc.edu;bcgsc.ca	37	15	40659780	40659780	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DISP2	NM_033510	exon8	c.G1467T	p.T489T	.	.	39	5	67	0	.	92
DIXDC1	85458	bcgsc.ca	37	11	111888500	111888500	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DIXDC1	NM_001037954	exon19	c.1862-1G>T	.	.	.	87	5	146	0	.	91
DLG1	1739	ucsc.edu	37	3	197024070	197024070	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DLG1	NM_001204386	exon2	c.G6A	p.P2P	.	.	42	4	44	0	.	118
DLG3	1741	bcgsc.ca	37	X	69712379	69712379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DLG3	NM_021120	exon12	c.A1706G	p.K569R	.	.	67	5	85	0	.	219
DMD	1756	bcgsc.ca	37	X	31224732	31224732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DMD	NM_004006	exon66	c.C9616A	p.L3206M	.	.	111	5	165	0	.	265
DMD	1756	bcgsc.ca	37	X	31792153	31792153	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DMD	NM_004006	exon51	c.T7466C	p.L2489P	.	.	87	5	150	0	.	265
DMD	1756	bcgsc.ca	37	X	32717229	32717229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DMD	NM_004006	exon8	c.G831T	p.Q277H	.	.	78	4	155	0	.	265
DMTF1	9988	bcgsc.ca	37	7	86820265	86820265	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DMTF1	NM_001142327	exon14	c.A1416G	p.S472S	.	.	61	4	56	0	.	91
DNA2	1763	bcgsc.ca	37	10	70191996	70191996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001080449	exon12	c.G1840T	p.D614Y	.	.	87	5	151	0	.	.
DNAH10	196385	bcgsc.ca	37	12	124267691	124267691	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH10	NM_207437	exon7	c.G696A	p.E232E	.	.	39	4	53	0	.	95
DNAH10	196385	bcgsc.ca	37	12	124352058	124352058	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH10	NM_207437	exon41	c.C6858A	p.P2286P	.	.	144	6	124	0	.	95
DNAH1	25981	bcgsc.ca	37	3	52429018	52429018	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH1	NM_015512	exon68	c.C10911A	p.T3637T	.	.	65	4	66	1	.	67
DNAH3	55567	bcgsc.ca	37	16	21151964	21151964	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH3	NM_017539	exon5	c.T589C	p.F197L	.	.	114	7	101	0	.	167
DNAH6	1768	bcgsc.ca	37	2	84780088	84780088	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH6	NM_001370	exon10	c.C1532A	p.P511H	.	.	70	4	73	0	.	69
DNAH7	56171	bcgsc.ca	37	2	196642529	196642529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH7	NM_018897	exon59	c.G11059T	p.G3687C	.	.	86	7	76	0	.	102
DNAH8	1769	bcgsc.ca	37	6	38828393	38828393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH8	NM_001206927	exon43	c.C6119A	p.P2040Q	.	.	209	6	154	0	.	615
DNAH8	1769	bcgsc.ca	37	6	38874077	38874077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH8	NM_001206927	exon63	c.A9242G	p.K3081R	.	.	90	4	92	0	.	615
DNAH8	1769	ucsc.edu;bcgsc.ca	37	6	38690904	38690904	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH8	NM_001206927	exon2	c.C319A	p.R107R	.	.	60	6	41	0	.	615
DNAH9	1770	bcgsc.ca	37	17	11700974	11700974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAH9	NM_001372	exon43	c.G8284T	p.G2762C	.	.	79	4	142	1	.	168
DNAJC10	54431	bcgsc.ca	37	2	183582848	183582848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAJC10	NM_001271581	exon3	c.G35T	p.R12I	.	.	72	4	52	0	.	273
DNAJC13	23317	bcgsc.ca	37	3	132207196	132207196	+	Missense_Mutation	SNP	C	C	A	rs201606696	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAJC13	NM_015268	exon30	c.C3322A	p.H1108N	.	.	130	8	100	0	C|0.999;T|0.000	272
DNAJC16	23341	bcgsc.ca	37	1	15894470	15894470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAJC16	NM_015291	exon15	c.C2147T	p.T716I	.	.	95	5	78	0	.	226
DNAJC25	548645	broad.mit.edu;bcgsc.ca	37	9	114409530	114409530	+	Silent	SNP	G	G	T	rs201070228	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNAJC25	NM_001015882	exon2	c.G480T	p.S160S	.	.	434	13	305	1	G|0.999;A|0.001	22
DNHD1	144132	bcgsc.ca	37	11	6579450	6579450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNHD1	NM_144666	exon25	c.G8925T	p.L2975F	.	.	18	3	37	0	.	24
DNPEP	23549	bcgsc.ca	37	2	220251073	220251073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DNPEP	NM_012100	exon5	c.G394T	p.G132C	.	.	53	4	60	0	.	90
DNPH1	10591	ucsc.edu;bcgsc.ca	37	6	43193533	43193533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_006443	exon4	c.G463T	p.D155Y	.	.	31	5	41	0	.	.
DOCK10	55619	bcgsc.ca	37	2	225704710	225704710	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK10	NM_014689	exon24	c.T2741C	p.V914A	.	.	73	4	85	0	.	92
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	129141983	129141983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK1	NM_001380	exon31	c.G3134A	p.S1045N	.	.	56	6	94	0	.	698
DOCK3	1795	bcgsc.ca	37	3	51274968	51274968	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK3	NM_004947	exon21	c.A2049G	p.R683R	.	.	76	4	72	0	.	22
DOCK5	80005	bcgsc.ca	37	8	25101213	25101213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK5	NM_024940	exon2	c.C67A	p.Q23K	.	.	76	4	53	1	.	71
DOCK5	80005	bcgsc.ca	37	8	25220610	25220610	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK5	NM_024940	exon29	c.G2997A	p.K999K	.	.	54	4	62	0	.	71
DOCK5	80005	ucsc.edu;bcgsc.ca	37	8	25174644	25174644	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK5	NM_024940	exon14	c.G1440A	p.L480L	.	.	46	4	48	0	.	71
DOCK6	57572	ucsc.edu;bcgsc.ca	37	19	11346345	11346345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK6	NM_020812	exon21	c.A2483G	p.H828R	.	.	47	4	49	0	.	93
DOCK7	85440	bcgsc.ca	37	1	62953073	62953073	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK7	NM_033407	exon42	c.G5411T	p.W1804L	.	.	145	5	130	1	.	92
DOCK9	23348	bcgsc.ca	37	13	99533862	99533862	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DOCK9	NM_001130049	exon25	c.G2698C	p.A900P	.	.	72	4	43	0	.	90
DPAGT1	1798	bcgsc.ca	37	11	118971021	118971021	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPAGT1	NM_001382	exon4	c.A594G	p.S198S	.	.	58	5	107	0	.	221
DPP8	54878	bcgsc.ca	37	15	65739269	65739269	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPP8	NM_197960	exon21	c.C2650A	p.L884I	.	.	87	4	46	0	.	91
DPP8	54878	bcgsc.ca	37	15	65790227	65790227	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPP8	NM_197960	exon6	c.A738G	p.E246E	.	.	75	4	71	0	.	91
DPY19L2P1	554236	bcgsc.ca	37	7	35131474	35131474	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	223	6	193	0	.	.
DPYD	1806	bcgsc.ca	37	1	98144729	98144729	+	Missense_Mutation	SNP	C	C	A	rs141726921	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPYD	NM_000110	exon8	c.G772T	p.G258C	.	.	138	5	95	0	C|1.000;T|0.000	278
DPYSL5	56896	ucsc.edu;bcgsc.ca	37	2	27162930	27162930	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DPYSL5	NM_001253724	exon9	c.C979A	p.R327R	.	.	69	6	74	0	.	92
DRG2	1819	bcgsc.ca	37	17	18003675	18003675	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DRG2	NM_001388	exon6	c.468-2A>G	.	.	.	58	5	70	0	.	91
DSC2	1824	bcgsc.ca	37	18	28651738	28651738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DSC2	NM_024422	exon13	c.G1958T	p.R653I	.	.	65	4	60	0	.	517
DSC2	1824	bcgsc.ca	37	18	28651777	28651777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DSC2	NM_024422	exon13	c.A1919G	p.D640G	.	.	47	4	41	0	.	517
DSG2	1829	bcgsc.ca	37	18	29126643	29126643	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DSG2	NM_001943	exon15	c.T3294C	p.S1098S	.	.	96	5	86	0	.	563
DTHD1	401124	bcgsc.ca	37	4	36292054	36292054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DTHD1	NM_001170700	exon2	c.C572A	p.P191Q	.	.	64	4	100	0	.	46
DTWD2	285605	bcgsc.ca	37	5	118280300	118280300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DTWD2	NM_173666	exon2	c.C263A	p.P88H	.	.	57	4	62	0	.	90
DUOX1	53905	bcgsc.ca	37	15	45426397	45426397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUOX1	NM_017434	exon5	c.C197T	p.P66L	.	.	46	4	37	0	.	142
DUSP16	80824	ucsc.edu	37	12	12630676	12630676	+	Silent	SNP	C	C	T	rs201910435		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP16	NM_030640	exon7	c.G1089A	p.V363V	.	.	28	3	17	0	.	226
DUSP27	92235	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096471	167096471	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP27	NM_001080426	exon5	c.C2103A	p.S701S	.	.	29	6	38	1	.	71
DUSP6	1848	ucsc.edu;bcgsc.ca	37	12	89745641	89745641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DUSP6	NM_001946	exon1	c.C176A	p.P59Q	.	.	34	4	47	0	.	846
DYNC1H1	1778	bcgsc.ca	37	14	102508608	102508608	+	Silent	SNP	C	C	A	rs141242095	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNC1H1	NM_001376	exon67	c.C12258A	p.T4086T	.	.	49	4	64	0	C|0.999;T|0.001	98
DYNC2H1	79659	bcgsc.ca	37	11	103059225	103059225	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNC2H1	NM_001080463	exon44	c.7141-1G>T	.	.	.	65	4	51	0	.	68
DYNC2H1	79659	bcgsc.ca	37	11	103152957	103152957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNC2H1	NM_001080463	exon73	c.C10832A	p.A3611D	.	.	82	5	59	1	.	68
DYNLT3	6990	ucsc.edu;bcgsc.ca	37	X	37701140	37701140	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYNLT3	NM_006520	exon3	c.G91T	p.G31C	.	.	47	5	95	0	.	130
DYRK1A	1859	bcgsc.ca	37	21	38865350	38865350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	DYRK1A	NM_001396	exon7	c.G983T	p.R328L	.	.	60	4	58	0	.	792
E2F3	1871	bcgsc.ca	37	6	20481492	20481492	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	E2F3	NM_001949	exon3	c.C561A	p.T187T	.	.	79	8	73	1	.	414
EBF2	64641	bcgsc.ca	37	8	25718716	25718716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EBF2	NM_022659	exon13	c.C1191A	p.D397E	.	.	50	4	68	0	.	26
EBLN2	55096	bcgsc.ca	37	3	73111644	73111644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_018029	exon1	c.C412A	p.Q138K	.	.	184	6	177	0	.	.
ECT2	1894	bcgsc.ca	37	3	172534593	172534593	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ECT2	NM_001258315	exon24	c.T2621A	p.V874E	.	.	95	5	73	0	.	724
EDC3	80153	bcgsc.ca	37	15	74963885	74963885	+	Missense_Mutation	SNP	G	G	T	rs148327581	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EDC3	NM_001142444	exon4	c.C395A	p.P132Q	.	.	86	6	71	0	G|1.000;A|0.000	91
EED	8726	bcgsc.ca	37	11	85961438	85961438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EED	NM_003797	exon2	c.A215G	p.K72R	.	.	129	6	91	0	.	227
EFCAB13	124989	broad.mit.edu;bcgsc.ca	37	17	45468811	45468811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152347	exon15	c.G1591T	p.G531C	.	.	358	10	170	0	.	.
EFCAB1	79645	bcgsc.ca	37	8	49642366	49642366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EFCAB1	NM_024593	exon4	c.G384A	p.M128I	.	.	78	4	67	0	.	90
EFCAB7	84455	ucsc.edu	37	1	64022821	64022821	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EFCAB7	NM_032437	exon10	c.A1251G	p.L417L	.	.	40	4	41	0	.	68
EFEMP1	2202	broad.mit.edu;bcgsc.ca	37	2	56104946	56104946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EFEMP1	NM_001039349	exon6	c.C695A	p.P232Q	.	.	86	7	70	1	.	520
EGF	1950	ucsc.edu	37	4	110925678	110925678	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EGF	NM_001963	exon22	c.C3191A	p.S1064X	.	.	39	4	26	0	.	524
EGLN1	54583	bcgsc.ca	37	1	231509774	231509774	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EGLN1	NM_022051	exon2	c.A963G	p.G321G	.	.	127	6	164	1	.	226
EHMT2	10919	bcgsc.ca	37	6	31860512	31860512	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EHMT2	NM_006709	exon7	c.668-1G>T	.	.	.	66	5	49	1	.	91
EIF2A	83939	bcgsc.ca	37	3	150270145	150270145	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF2A	NM_032025	exon2	c.C31A	p.R11R	.	.	75	4	48	0	.	22
EIF2AK4	440275	bcgsc.ca	37	15	40246116	40246116	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF2AK4	NM_001013703	exon5	c.C525A	p.I175I	.	.	79	4	47	0	.	757
EIF2B5	8893	bcgsc.ca	37	3	183860127	183860127	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF2B5	NM_003907	exon9	c.T1405C	p.S469P	.	.	67	5	50	0	.	95
EIF4E2	9470	bcgsc.ca	37	2	233421228	233421228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF4E2	NM_004846	exon2	c.T123A	p.S41R	.	.	80	4	104	0	.	90
EIF4G3	8672	bcgsc.ca	37	1	21205816	21205816	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF4G3	NM_001198801	exon18	c.G2562T	p.T854T	.	.	127	7	99	0	.	91
EIF5B	9669	bcgsc.ca	37	2	99976952	99976952	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EIF5B	NM_015904	exon3	c.G186A	p.L62L	.	.	104	4	104	1	.	93
ELAC2	60528	bcgsc.ca	37	17	12920439	12920439	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ELAC2	NM_001165962	exon3	c.246-1G>T	.	.	.	109	5	200	1	.	90
ELF5	2001	ucsc.edu;bcgsc.ca	37	11	34527177	34527177	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ELF5	NM_198381	exon2	c.A150G	p.T50T	.	.	34	4	28	0	.	227
ELP3	55140	bcgsc.ca	37	8	28013464	28013464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ELP3	NM_018091	exon11	c.T1106C	p.I369T	.	.	174	6	146	0	.	90
EMC1	23065	bcgsc.ca	37	1	19549316	19549316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015047	exon20	c.A2389G	p.N797D	.	.	53	4	59	0	.	.
EMC8	10328	ucsc.edu;bcgsc.ca	37	16	85832837	85832837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_006067	exon1	c.C65A	p.P22Q	.	.	17	4	38	0	.	.
EML4	27436	bcgsc.ca	37	2	42528380	42528380	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EML4	NM_001145076	exon13	c.1316-1G>T	.	.	.	122	5	103	0	.	3734
EML4	27436	broad.mit.edu;bcgsc.ca	37	2	42490410	42490410	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EML4	NM_019063	exon5	c.C605A	p.P202H	.	.	184	10	149	0	.	3734
EML6	400954	bcgsc.ca	37	2	55080989	55080989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001039753	exon10	c.A1654G	p.R552G	.	.	81	5	90	1	.	.
EMR1	2015	bcgsc.ca	37	19	6921867	6921867	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EMR1	NM_001256253	exon14	c.C1764T	p.A588A	.	.	91	5	73	0	.	526
ENO4	387712	bcgsc.ca	37	10	118633649	118633649	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ENO4	NM_001242699	exon10	c.G1278A	p.L426L	.	.	68	4	102	0	.	69
ENPP3	5169	bcgsc.ca	37	6	132043464	132043464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ENPP3	NM_005021	exon18	c.G1665T	p.E555D	.	.	244	7	227	0	.	95
ENPP7	339221	ucsc.edu	37	17	77708869	77708869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ENPP7	NM_178543	exon3	c.C427A	p.P143T	.	.	45	4	37	0	.	92
ENTPD3	956	bcgsc.ca	37	3	40456270	40456270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ENTPD3	NM_001248	exon6	c.G536A	p.G179E	.	.	120	5	110	0	.	91
EPB41L2	2037	bcgsc.ca	37	6	131201308	131201308	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPB41L2	NM_001431	exon13	c.C1872A	p.V624V	.	.	79	4	69	0	.	91
EPB41L2	2037	bcgsc.ca	37	6	131222246	131222246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPB41L2	NM_001135554	exon7	c.T1004C	p.L335P	.	.	46	4	39	0	.	91
EPB41L4B	54566	bcgsc.ca	37	9	111938856	111938856	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPB41L4B	NM_019114	exon25	c.C2608A	p.R870R	.	.	79	5	70	0	.	92
EPG5	57724	bcgsc.ca	37	18	43493698	43493698	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPG5	NM_020964	exon21	c.T3789C	p.S1263S	.	.	53	4	48	0	.	580
EPHA10	284656	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38192825	38192825	+	Missense_Mutation	SNP	G	G	A	rs34409053		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHA10	NM_001099439	exon8	c.C1721T	p.S574L	.	.	44	21	45	0	G|0.991;A|0.009	1246
EPHA3	2042	bcgsc.ca	37	3	89259216	89259216	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHA3	NM_005233	exon3	c.C360A	p.F120L	.	.	79	4	90	0	.	1500
EPHA6	285220	bcgsc.ca	37	3	96585697	96585697	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHA6	NM_001080448	exon2	c.G414T	p.L138L	.	.	354	8	278	0	.	1561
EPHB3	2049	bcgsc.ca	37	3	184295219	184295219	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPHB3	NM_004443	exon6	c.A1443G	p.G481G	.	.	109	6	139	0	.	1455
EPRS	2058	bcgsc.ca	37	1	220191792	220191792	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPRS	NM_004446	exon12	c.A1493G	p.K498R	.	.	72	4	107	0	.	92
EPRS	2058	bcgsc.ca	37	1	220213579	220213579	+	Missense_Mutation	SNP	C	C	A	rs199544775	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPRS	NM_004446	exon2	c.G79T	p.D27Y	.	.	131	5	183	1	C|1.000;T|0.000	92
EPS8	2059	broad.mit.edu;bcgsc.ca	37	12	15784587	15784587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EPS8	NM_004447	exon18	c.G1833T	p.M611I	.	.	81	6	84	0	.	94
ERBB2IP	55914	bcgsc.ca	37	5	65368117	65368117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERBB2IP	NM_001253697	exon22	c.A3754G	p.K1252E	.	.	69	4	59	0	.	653
ERBB4	2066	bcgsc.ca	37	2	212522485	212522485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERBB4	NM_001042599	exon16	c.A1940G	p.H647R	.	.	78	4	86	0	.	1461
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	212615384	212615384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERBB4	NM_001042599	exon5	c.C602A	p.T201K	.	.	51	24	32	0	.	1461
ERG	2078	bcgsc.ca	37	21	39795363	39795363	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERG	NM_001243432	exon5	c.C378A	p.T126T	.	.	115	6	120	0	.	848
ERI3	79033	bcgsc.ca	37	1	44785362	44785362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERI3	NM_024066	exon4	c.T544C	p.S182P	.	.	73	4	70	0	.	92
ERMP1	79956	bcgsc.ca	37	9	5787539	5787539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERMP1	NM_024896	exon14	c.A2441G	p.Q814R	.	.	104	5	49	0	.	69
ERN1	2081	broad.mit.edu;bcgsc.ca	37	17	62157022	62157022	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ERN1	NM_001433	exon4	c.G282T	p.T94T	.	.	299	10	146	0	.	784
ESCO1	114799	bcgsc.ca	37	18	19140893	19140893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ESCO1	NM_052911	exon8	c.C1880T	p.T627I	.	.	99	4	56	0	.	90
ESF1	51575	bcgsc.ca	37	20	13753242	13753242	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ESF1	NM_001276380	exon5	c.G1169T	p.G390V	.	.	132	5	97	0	.	91
ESR2	2100	ucsc.edu;bcgsc.ca	37	14	64749351	64749351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ESR2	NM_001214902	exon1	c.C353A	p.P118H	.	.	26	4	28	0	.	611
ETV5	2119	bcgsc.ca	37	3	185823276	185823276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ETV5	NM_004454	exon4	c.A143G	p.Q48R	.	.	66	4	54	0	.	706
EXOC1	55763	bcgsc.ca	37	4	56738054	56738054	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EXOC1	NM_018261	exon8	c.G1004T	p.R335L	.	.	163	7	168	1	.	950
EXOC3L2	90332	ucsc.edu;bcgsc.ca	37	19	45716529	45716529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EXOC3L2	NM_138568	exon10	c.T1028C	p.L343P	.	.	58	5	63	0	.	91
EXOSC9	5393	bcgsc.ca	37	4	122728745	122728745	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EXOSC9	NM_001034194	exon6	c.C573A	p.P191P	.	.	146	5	134	0	.	90
EYS	346007	bcgsc.ca	37	6	65149231	65149231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	EYS	NM_001142800	exon27	c.C5659A	p.R1887S	.	.	94	4	73	0	.	660
F5	2153	ucsc.edu	37	1	169510650	169510650	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	F5	NM_000130	exon13	c.C3678T	p.L1226L	.	.	342	2	384	1	.	157
F8	2157	bcgsc.ca	37	X	154158401	154158401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	F8	NM_000132	exon14	c.A3664G	p.T1222A	.	.	104	6	105	0	.	182
FAAH2	158584	bcgsc.ca	37	X	57475028	57475028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAAH2	NM_174912	exon10	c.A1300G	p.S434G	.	.	109	5	113	0	.	133
FAM111A	63901	bcgsc.ca	37	11	58920601	58920601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM111A	NM_001142520	exon5	c.T1460C	p.V487A	.	.	100	5	111	0	.	93
FAM124A	220108	ucsc.edu;bcgsc.ca	37	13	51855053	51855053	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM124A	NM_145019	exon5	c.C1410T	p.P470P	.	.	31	4	32	0	.	90
FAM124B	79843	bcgsc.ca	37	2	225244372	225244372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM124B	NM_001122779	exon2	c.G1286T	p.R429M	.	.	67	4	73	0	.	92
FAM135A	57579	bcgsc.ca	37	6	71235607	71235607	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM135A	NM_001162529	exon13	c.C2820A	p.S940S	.	.	78	4	60	0	.	90
FAM154A	158297	bcgsc.ca	37	9	18950860	18950860	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM154A	NM_153707	exon2	c.C114A	p.T38T	.	.	329	9	220	1	.	69
FAM161A	84140	bcgsc.ca	37	2	62067032	62067032	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM161A	NM_032180	exon3	c.C1107A	p.T369T	.	.	213	7	192	0	.	136
FAM161B	145483	bcgsc.ca	37	14	74402732	74402732	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM161B	NM_152445	exon8	c.G1914T	p.L638L	.	.	144	5	136	0	.	91
FAM177B	400823	bcgsc.ca	37	1	222922821	222922821	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM177B	NM_207468	exon5	c.G256T	p.G86C	.	.	66	4	124	0	.	45
FAM179B	23116	bcgsc.ca	37	14	45432408	45432408	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM179B	NM_015091	exon1	c.C784A	p.R262R	.	.	83	5	72	0	.	93
FAM189A2	9413	bcgsc.ca	37	9	71990712	71990712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM189A2	NM_004816	exon4	c.A184G	p.T62A	.	.	82	4	58	0	.	90
FAM214A	56204	bcgsc.ca	37	15	52885931	52885931	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_019600	exon10	c.A2652G	p.E884E	.	.	94	5	68	0	.	.
FAM217A	222826	bcgsc.ca	37	6	4073564	4073564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_173563	exon6	c.G247T	p.G83W	.	.	92	4	43	0	.	.
FAM26D	221301	bcgsc.ca	37	6	116875396	116875396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM26D	NM_001256887	exon3	c.A11G	p.N4S	.	.	95	5	80	0	.	90
FAM35A	54537	bcgsc.ca	37	10	88911161	88911161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM35A	NM_019054	exon3	c.C50A	p.P17Q	.	.	234	9	319	0	.	94
FAM3B	54097	bcgsc.ca	37	21	42716402	42716402	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM3B	NM_206964	exon3	c.144-1G>T	.	.	.	74	6	75	0	.	90
FAM5B	57795	bcgsc.ca	37	1	177247717	177247717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM5B	NM_021165	exon7	c.T1031C	p.L344P	.	.	63	4	67	0	.	28
FAM71B	153745	bcgsc.ca	37	5	156593177	156593177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM71B	NM_130899	exon1	c.G3T	p.M1I	.	.	53	4	52	0	.	96
FAM71E2	284418	bcgsc.ca	37	19	55869515	55869515	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145402	exon9	c.C2721A	p.P907P	.	.	66	4	80	2	.	.
FAM83B	222584	bcgsc.ca	37	6	54735282	54735282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAM83B	NM_001010872	exon2	c.G238T	p.D80Y	.	.	83	4	62	0	.	96
FAM92A1	137392	bcgsc.ca	37	8	94717200	94717200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	117	5	94	0	.	.
FAM92A1P2	403315	bcgsc.ca	37	4	183960095	183960095	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	44	5	42	0	.	.
FANCA	2175	bcgsc.ca	37	16	89816277	89816277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FANCA	NM_000135	exon32	c.C3100A	p.L1034I	.	.	18	3	47	0	.	1130
FANCA	2175	bcgsc.ca	37	16	89842199	89842199	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FANCA	NM_000135	exon21	c.G1851A	p.L617L	.	.	51	4	39	0	.	1130
FANCB	2187	bcgsc.ca	37	X	14863008	14863008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FANCB	NM_152633	exon7	c.C1897A	p.L633I	.	.	58	4	79	0	.	562
FANCD2	2177	bcgsc.ca	37	3	10074554	10074554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FANCD2	NM_001018115	exon3	c.T103C	p.S35P	.	.	189	7	123	0	.	229
FANCI	55215	bcgsc.ca	37	15	89836184	89836184	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FANCI	NM_001113378	exon22	c.A2181G	p.A727A	.	.	287	8	220	0	.	92
FARP2	9855	bcgsc.ca	37	2	242350500	242350500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FARP2	NM_014808	exon6	c.T463C	p.C155R	.	.	65	4	66	0	.	93
FASTKD1	79675	bcgsc.ca	37	2	170403098	170403098	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FASTKD1	NM_024622	exon8	c.C1331A	p.P444Q	.	.	160	7	136	0	.	119
FAT1	2195	bcgsc.ca	37	4	187518002	187518002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT1	NM_005245	exon25	c.C12692A	p.P4231Q	.	.	134	6	91	0	.	34
FAT1	2195	bcgsc.ca	37	4	187518947	187518947	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT1	NM_005245	exon25	c.12258-1G>T	.	.	.	88	6	56	1	.	34
FAT1	2195	bcgsc.ca	37	4	187541860	187541860	+	Silent	SNP	G	G	T	rs199775640	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT1	NM_005245	exon10	c.C5880A	p.A1960A	.	.	97	5	74	0	G|0.999;A|0.001	34
FAT3	120114	ucsc.edu;bcgsc.ca	37	11	92087568	92087568	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT3	NM_001008781	exon1	c.A2290T	p.T764S	.	.	39	4	59	0	.	73
FAT4	79633	bcgsc.ca	37	4	126239844	126239844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT4	NM_024582	exon1	c.C2278A	p.Q760K	.	.	90	5	100	1	.	108
FAT4	79633	bcgsc.ca	37	4	126240753	126240753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT4	NM_024582	exon1	c.C3187A	p.Q1063K	.	.	83	5	77	0	.	108
FAT4	79633	bcgsc.ca	37	4	126240965	126240965	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT4	NM_024582	exon1	c.A3399G	p.G1133G	.	.	145	5	137	0	.	108
FAT4	79633	bcgsc.ca	37	4	126370977	126370977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT4	NM_024582	exon9	c.C8806A	p.Q2936K	.	.	82	6	72	0	.	108
FAT4	79633	bcgsc.ca	37	4	126373019	126373019	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FAT4	NM_024582	exon9	c.G10848T	p.T3616T	.	.	45	4	33	0	.	108
FBLN7	129804	bcgsc.ca	37	2	112922610	112922610	+	Missense_Mutation	SNP	G	G	T	rs190676629	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBLN7	NM_153214	exon3	c.G268T	p.G90C	.	.	74	4	84	2	G|0.999;A|0.000	69
FBN2	2201	ucsc.edu;bcgsc.ca	37	5	127712541	127712541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN2	NM_001999	exon14	c.G1855T	p.D619Y	.	.	46	4	37	0	.	146
FBN3	84467	ucsc.edu;bcgsc.ca	37	19	8154496	8154496	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBN3	NM_032447	exon50	c.C6309A	p.T2103T	.	.	41	4	52	0	.	100
FBXL13	222235	bcgsc.ca	37	7	102518863	102518863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXL13	NM_001111038	exon15	c.G1423A	p.G475S	.	.	63	4	46	0	.	226
FBXL13	222235	bcgsc.ca	37	7	102524761	102524761	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXL13	NM_001111038	exon13	c.1009-2A>G	.	.	.	57	4	43	0	.	226
FBXO18	84893	bcgsc.ca	37	10	5969400	5969400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXO18	NM_032807	exon20	c.T2878C	p.S960P	.	.	175	6	122	0	.	228
FBXO40	51725	bcgsc.ca	37	3	121341262	121341262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXO40	NM_016298	exon3	c.C986A	p.P329H	.	.	72	5	50	0	.	273
FBXO40	51725	bcgsc.ca	37	3	121341425	121341425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXO40	NM_016298	exon3	c.G1149T	p.L383F	.	.	76	4	73	0	.	273
FBXO44	93611	bcgsc.ca	37	1	11716142	11716142	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXO44	NM_033182	exon2	c.A250G	p.N84D	.	.	50	4	58	0	.	227
FBXO9	26268	bcgsc.ca	37	6	52943633	52943633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FBXO9	NM_012347	exon4	c.C374A	p.P125H	.	.	205	6	172	1	.	227
FCHO2	115548	bcgsc.ca	37	5	72347222	72347222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FCHO2	NM_138782	exon12	c.C986T	p.T329I	.	.	170	7	128	0	.	23
FCN2	2220	bcgsc.ca	37	9	137778351	137778351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FCN2	NM_004108	exon7	c.T635C	p.V212A	.	.	141	6	112	0	.	153
FCRL3	115352	bcgsc.ca	37	1	157668190	157668190	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FCRL3	NM_052939	exon4	c.T282C	p.H94H	.	.	185	7	144	0	.	156
FDPS	2224	bcgsc.ca	37	1	155288703	155288703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FDPS	NM_001135821	exon8	c.C830T	p.A277V	.	.	55	4	43	0	.	90
FEM1B	10116	bcgsc.ca	37	15	68581960	68581960	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FEM1B	NM_015322	exon2	c.T264C	p.G88G	.	.	61	4	50	0	.	90
FER1L6	654463	bcgsc.ca	37	8	125035700	125035700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FER1L6	NM_001039112	exon18	c.C2150A	p.P717H	.	.	101	6	84	0	.	100
FER1L6	654463	bcgsc.ca	37	8	125072790	125072790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FER1L6	NM_001039112	exon24	c.T2987C	p.V996A	.	.	112	6	82	0	.	100
FERMT1	55612	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	6096555	6096555	+	Missense_Mutation	SNP	C	C	A	rs184921922	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FERMT1	NM_017671	exon3	c.G288T	p.M96I	.	.	57	10	47	0	C|0.999;T|0.001	495
FGD6	55785	bcgsc.ca	37	12	95507437	95507437	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FGD6	NM_018351	exon9	c.A3123G	p.R1041R	.	.	145	5	77	0	.	137
FGD6	55785	bcgsc.ca	37	12	95602792	95602792	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FGD6	NM_018351	exon2	c.A2268G	p.E756E	.	.	124	5	125	0	.	137
FGF5	2250	bcgsc.ca	37	4	81207659	81207659	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FGF5	NM_004464	exon3	c.C640A	p.H214N	.	.	141	6	146	0	.	1135
FHOD3	80206	ucsc.edu;bcgsc.ca	37	18	34289290	34289290	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FHOD3	NM_025135	exon15	c.G1944A	p.S648S	.	.	47	4	72	0	.	139
FICD	11153	ucsc.edu;bcgsc.ca	37	12	108912413	108912413	+	Missense_Mutation	SNP	C	C	A	rs139799946	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FICD	NM_007076	exon3	c.C538A	p.R180S	.	.	43	4	57	0	C|1.000;T|0.000	68
FIGF	2277	bcgsc.ca	37	X	15401991	15401991	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FIGF	NM_004469	exon1	c.T78C	p.H26H	.	.	79	4	141	0	.	131
FIGNL1	63979	bcgsc.ca	37	7	50513611	50513611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FIGNL1	NM_001042762	exon4	c.G1375T	p.G459W	.	.	51	4	43	0	.	93
FITM2	128486	bcgsc.ca	37	20	42935310	42935310	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FITM2	NM_001080472	exon2	c.C744A	p.P248P	.	.	97	5	112	0	.	24
FLG	2312	bcgsc.ca	37	1	152279997	152279997	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLG	NM_002016	exon3	c.C7365A	p.S2455S	.	.	188	6	161	0	.	106
FLNA	2316	ucsc.edu;bcgsc.ca	37	X	153592415	153592415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLNA	NM_001456	exon15	c.T2255C	p.V752A	.	.	31	4	45	0	.	599
FLT1	2321	bcgsc.ca	37	13	28908226	28908226	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLT1	NM_002019	exon18	c.A2529G	p.Q843Q	.	.	78	4	73	0	.	1406
FLT1	2321	bcgsc.ca	37	13	28913365	28913365	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLT1	NM_002019	exon17	c.T2428C	p.C810R	.	.	69	4	70	0	.	1406
FLT3	2322	bcgsc.ca	37	13	28601244	28601244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FLT3	NM_004119	exon17	c.C2188A	p.Q730K	.	.	88	4	52	0	.	42117
FMNL2	114793	ucsc.edu;bcgsc.ca	37	2	153475551	153475551	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FMNL2	NM_052905	exon14	c.G1506A	p.L502L	.	.	47	4	48	0	.	516
FMO4	2329	bcgsc.ca	37	1	171303593	171303593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FMO4	NM_002022	exon8	c.A871G	p.I291V	.	.	91	4	55	0	.	537
FN1	2335	bcgsc.ca	37	2	216296556	216296556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FN1	NM_212476	exon4	c.G547T	p.A183S	.	.	160	5	152	0	.	584
FNBP4	23360	bcgsc.ca	37	11	47745665	47745665	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FNBP4	NM_015308	exon14	c.T2379A	p.A793A	.	.	60	4	50	0	.	91
FNDC3A	22862	bcgsc.ca	37	13	49742825	49742825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FNDC3A	NM_001079673	exon10	c.G1114T	p.D372Y	.	.	121	5	98	0	.	278
FNDC3A	22862	broad.mit.edu	37	13	49712937	49712937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FNDC3A	NM_001079673	exon7	c.C815A	p.P272Q	.	.	642	11	560	0	.	278
FNIP1	96459	bcgsc.ca	37	5	130987643	130987643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FNIP1	NM_133372	exon16	c.A3158G	p.D1053G	.	.	55	4	44	0	.	92
FOCAD	54914	bcgsc.ca	37	9	20715394	20715394	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_017794	exon4	c.T42C	p.S14S	.	.	73	4	39	0	.	.
FOLR3	2352	bcgsc.ca	37	11	71847040	71847040	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	99	5	110	0	.	.
FOSL1	8061	ucsc.edu	37	11	65664421	65664421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FOSL1	NM_005438	exon2	c.G156A	p.W52X	.	.	36	4	39	0	.	522
FOXM1	2305	bcgsc.ca	37	12	2981341	2981341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FOXM1	NM_202003	exon3	c.C575A	p.S192Y	.	.	67	4	96	0	.	227
FOXN2	3344	bcgsc.ca	37	2	48573399	48573399	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FOXN2	NM_002158	exon3	c.C46A	p.P16T	.	.	106	5	67	0	.	226
FRMD4B	23150	bcgsc.ca	37	3	69267496	69267496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	FRMD4B,NS,carcinoma,+1	FRMD4B	NM_015123	exon10	c.G766T	p.G256C	.	.	154	6	115	0	.	72
FRMD4B	23150	bcgsc.ca	37	3	69351555	69351555	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FRMD4B	NM_015123	exon4	c.C355A	p.R119R	.	.	95	6	86	0	.	72
FRMPD2	143162	bcgsc.ca	37	10	49414808	49414808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FRMPD2	NM_001018071	exon14	c.G1780T	p.G594W	.	.	57	5	72	0	.	153
FRRS1	391059	bcgsc.ca	37	1	100203805	100203805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FRRS1	NM_001013660	exon7	c.G596T	p.G199V	.	.	67	4	59	0	.	91
FSCB	84075	bcgsc.ca	37	14	44973725	44973725	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FSCB	NM_032135	exon1	c.T2466C	p.P822P	.	.	98	5	63	0	.	587
FSCN1	6624	ucsc.edu;bcgsc.ca	37	7	5643635	5643635	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FSCN1	NM_003088	exon4	c.T1253C	p.F418S	.	.	33	4	27	0	.	91
FUCA1	2517	bcgsc.ca	37	1	24189648	24189648	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FUCA1	NM_000147	exon3	c.C638A	p.P213Q	.	.	71	4	45	1	.	153
FUT5	2527	bcgsc.ca	37	19	5867628	5867628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FUT5	NM_002034	exon2	c.T109C	p.S37P	.	.	72	6	85	0	.	90
FUZ	80199	ucsc.edu	37	19	50315561	50315561	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FUZ	NM_025129	exon3	c.G265T	p.G89C	.	.	44	4	33	0	.	90
FYTTD1	84248	bcgsc.ca	37	3	197500298	197500298	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FYTTD1	NM_032288	exon5	c.C522A	p.T174T	.	.	61	4	56	0	.	90
FZD2	2535	ucsc.edu	37	17	42636560	42636560	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FZD2	NM_001466	exon1	c.C1504A	p.L502M	.	.	43	4	21	0	.	660
FZR1	51343	bcgsc.ca	37	19	3527734	3527734	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	FZR1	NM_001136198	exon6	c.G576T	p.L192L	.	.	75	6	105	0	.	227
G6PC2	57818	bcgsc.ca	37	2	169764399	169764399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	G6PC2	NM_021176	exon5	c.G878T	p.R293L	.	.	127	5	105	0	.	91
G6PD	2539	bcgsc.ca	37	X	153760824	153760824	+	Silent	SNP	G	G	T	rs147131392	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	G6PD	NM_000402	exon10	c.C1335A	p.P445P	.	.	78	6	112	1	G|0.999;A|0.001	135
GAB2	9846	bcgsc.ca	37	11	77991869	77991869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GAB2	NM_080491	exon2	c.G154T	p.D52Y	.	.	100	6	101	0	.	663
GABBR2	9568	bcgsc.ca	37	9	101133818	101133818	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABBR2	NM_005458	exon12	c.C1698A	p.T566T	.	.	92	5	51	0	.	518
GABRA6	2559	bcgsc.ca	37	5	161116708	161116708	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRA6	NM_000811	exon6	c.C596A	p.P199Q	.	.	116	5	95	0	.	163
GABRA6	2559	bcgsc.ca	37	5	161117206	161117206	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRA6	NM_000811	exon7	c.674-1G>T	.	.	.	71	6	58	0	.	163
GABRA6	2559	bcgsc.ca	37	5	161128672	161128672	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRA6	NM_000811	exon9	c.C1255A	p.Q419K	.	.	129	5	108	0	.	163
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160972296	160972296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRB2	NM_021911	exon4	c.C174T	p.P58P	.	.	60	26	53	0	.	91
GABRR1	2569	bcgsc.ca	37	6	89899893	89899893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GABRR1	NM_002042	exon6	c.A646G	p.I216V	.	.	59	4	59	0	.	91
GALC	2581	bcgsc.ca	37	14	88454499	88454499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GALC	NM_000153	exon3	c.G317T	p.G106V	.	.	100	5	68	0	.	90
GALNT1	2589	bcgsc.ca	37	18	33266989	33266989	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GALNT1	NM_020474	exon5	c.G699T	p.V233V	.	.	50	4	46	0	.	92
GALNT14	79623	bcgsc.ca	37	2	31133904	31133904	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GALNT14	NM_001253826	exon16	c.C1537T	p.H513Y	.	.	121	6	145	0	.	93
GBA3	57733	bcgsc.ca	37	4	22820434	22820434	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GBA3	.	.	.	.	.	.	42	4	82	0	.	1
GCK	2645	ucsc.edu	37	7	44189436	44189436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GCK	NM_033507	exon6	c.C605T	p.A202V	.	.	51	4	45	0	.	416
GCNT2	2651	bcgsc.ca	37	6	10586386	10586386	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GCNT2	NM_145655	exon1	c.A164G	p.K55R	.	.	83	4	69	0	.	92
GCOM1	145781	bcgsc.ca	37	15	57910293	57910293	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GCOM1	NM_001018090	exon3	c.G225T	p.V75V	.	.	80	4	91	0	.	91
GDPD2	54857	bcgsc.ca	37	X	69652464	69652464	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GDPD2	NM_001171192	exon15	c.C1644A	p.T548T	.	.	148	7	130	0	.	132
GDPD4	220032	bcgsc.ca	37	11	76944139	76944139	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GDPD4	NM_182833	exon13	c.C1320T	p.S440S	.	.	60	4	44	0	.	69
GEN1	348654	bcgsc.ca	37	2	17942848	17942848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GEN1	NM_182625	exon3	c.A347G	p.E116G	.	.	124	5	68	1	.	359
GEN1	348654	bcgsc.ca	37	2	17954002	17954002	+	Missense_Mutation	SNP	C	C	A	rs202192107	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GEN1	NM_182625	exon8	c.C904A	p.R302S	.	.	156	5	108	0	C|0.999;T|0.001	359
GHRHR	2692	bcgsc.ca	37	7	31015422	31015422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GHRHR	NM_000823	exon10	c.C913T	p.R305C	.	.	110	6	153	1	.	586
GIMAP7	168537	ucsc.edu;bcgsc.ca	37	7	150217195	150217195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GIMAP7	NM_153236	exon2	c.A133G	p.K45E	.	.	44	4	34	0	.	228
GIPR	2696	bcgsc.ca	37	19	46177352	46177352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GIPR	NM_000164	exon6	c.G405T	p.E135D	.	.	57	5	84	0	.	523
GJA1	2697	broad.mit.edu;bcgsc.ca	37	6	121768405	121768405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GJA1	NM_000165	exon2	c.G412T	p.G138C	.	.	109	9	125	1	.	92
GJC1	10052	bcgsc.ca	37	17	42883013	42883013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GJC1	NM_005497	exon3	c.C173A	p.P58Q	.	.	77	4	61	0	.	248
GK	2710	bcgsc.ca	37	X	30695539	30695539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GK	NM_203391	exon4	c.A307G	p.I103V	.	.	80	5	112	0	.	130
GLB1	2720	bcgsc.ca	37	3	33094997	33094997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLB1	NM_000404	exon7	c.C778T	p.P260S	.	.	68	4	82	0	.	135
GLO1	2739	bcgsc.ca	37	6	38649851	38649851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLO1	NM_006708	exon5	c.G403A	p.V135I	.	.	61	4	56	0	.	227
GLRA2	2742	bcgsc.ca	37	X	14592657	14592657	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLRA2	NM_001118886	exon3	c.T246C	p.F82F	.	.	60	4	138	0	.	131
GLRB	2743	bcgsc.ca	37	4	158059963	158059963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLRB	NM_000824	exon7	c.G613T	p.G205C	.	.	213	6	142	0	.	92
GLRX3	10539	bcgsc.ca	37	10	131973297	131973297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLRX3	NM_006541	exon10	c.A901G	p.T301A	.	.	77	4	152	0	.	22
GLS2	27165	bcgsc.ca	37	12	56881806	56881806	+	Missense_Mutation	SNP	C	C	T	rs76744088	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLS2	NM_013267	exon1	c.G97A	p.G33S	.	.	19	3	35	0	C|0.500;A|0.500	91
GLT8D1	55830	bcgsc.ca	37	3	52730261	52730261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLT8D1	NM_152932	exon6	c.T521C	p.V174A	.	.	96	4	121	0	.	90
GLUD1	2746	bcgsc.ca	37	10	88822554	88822554	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLUD1	NM_005271	exon6	c.C780A	p.I260I	.	.	59	4	89	0	.	90
GLYR1	84656	ucsc.edu;bcgsc.ca	37	16	4861199	4861199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GLYR1	NM_032569	exon15	c.C1559A	p.P520Q	.	.	49	4	61	0	.	90
GMPPA	29926	ucsc.edu;bcgsc.ca	37	2	220371496	220371496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GMPPA	NM_205847	exon13	c.C1239A	p.S413R	.	.	22	6	36	0	.	90
GMPR2	51292	bcgsc.ca	37	14	24706288	24706288	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GMPR2	NM_016576	exon5	c.G531T	p.V177V	.	.	100	6	112	0	.	93
GMPS	8833	bcgsc.ca	37	3	155633927	155633927	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GMPS	NM_003875	exon9	c.A1158G	p.E386E	.	.	79	4	71	0	.	229
GNAO1	2775	bcgsc.ca	37	16	56377765	56377765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GNAO1	NM_138736	exon8	c.T968C	p.V323A	.	.	32	4	88	0	.	659
GNL2	29889	bcgsc.ca	37	1	38048469	38048469	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GNL2	NM_013285	exon7	c.T705C	p.P235P	.	.	67	4	53	0	.	91
GOLGA4	2803	bcgsc.ca	37	3	37365475	37365475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GOLGA4	NM_001172713	exon15	c.C2164A	p.R722S	.	.	89	5	77	0	.	93
GOLGB1	2804	bcgsc.ca	37	3	121445850	121445850	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GOLGB1	NM_004487	exon5	c.A441G	p.E147E	.	.	340	8	265	0	.	161
GORASP1	64689	ucsc.edu;bcgsc.ca	37	3	39140363	39140363	+	Missense_Mutation	SNP	A	A	G	rs140610726	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GORASP1	NM_031899	exon8	c.T938C	p.I313T	.	.	47	4	74	0	A|0.999;C|0.000	92
GPAM	57678	bcgsc.ca	37	10	113924289	113924289	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPAM	NM_020918	exon13	c.C1301T	p.P434L	.	.	47	4	52	0	.	92
GPHN	10243	bcgsc.ca	37	14	67567588	67567588	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPHN	NM_020806	exon13	c.G1253T	p.G418V	.	.	73	4	46	0	.	228
GPN1	11321	bcgsc.ca	37	2	27857789	27857789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPN1	NM_007266	exon6	c.C469A	p.L157I	.	.	61	4	67	0	.	159
GPR110	266977	bcgsc.ca	37	6	46982500	46982500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR110	NM_153840	exon9	c.A844G	p.N282D	.	.	72	4	68	0	.	71
GPR112	139378	bcgsc.ca	37	X	135474454	135474454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR112	NM_153834	exon17	c.T7975C	p.F2659L	.	.	181	6	170	0	.	183
GPR113	165082	bcgsc.ca	37	2	26532829	26532829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR113	NM_001145168	exon13	c.G3223T	p.G1075C	.	.	63	4	54	0	.	94
GPR126	57211	bcgsc.ca	37	6	142691593	142691593	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR126	NM_198569	exon4	c.C732T	p.D244D	.	.	70	4	67	0	.	91
GPR162	27239	ucsc.edu	37	12	6934723	6934723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR162	NM_019858	exon3	c.G942T	p.M314I	.	.	47	4	48	1	.	92
GPR18	2841	bcgsc.ca	37	13	99907148	99907148	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR18	NM_001098200	exon2	c.A979G	p.N327D	.	.	114	5	96	0	.	90
GPR22	2845	bcgsc.ca	37	7	107114756	107114756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR22	NM_005295	exon3	c.T251C	p.L84P	.	.	178	7	151	0	.	92
GPR98	84059	bcgsc.ca	37	5	89914967	89914967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR98	NM_032119	exon4	c.A422G	p.D141G	.	.	210	6	161	0	.	103
GPR98	84059	bcgsc.ca	37	5	89949687	89949687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR98	NM_032119	exon20	c.G4296T	p.E1432D	.	.	60	4	68	0	.	103
GPR98	84059	bcgsc.ca	37	5	90052348	90052348	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GPR98	NM_032119	exon56	c.A11658G	p.T3886T	.	.	81	4	75	0	.	103
GRB10	2887	broad.mit.edu	37	7	50660663	50660663	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRB10	NM_005311	exon16	c.C1771A	p.R591R	.	.	47	4	44	0	.	1272
GREB1L	80000	bcgsc.ca	37	18	19020323	19020323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001142966	exon9	c.C1043A	p.P348H	.	.	49	4	40	0	.	.
GRIK1	2897	bcgsc.ca	37	21	30953864	30953864	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRIK1	NM_175611	exon13	c.1749-1G>T	.	.	.	56	4	63	0	.	137
GRIK2	2898	bcgsc.ca	37	6	102130481	102130481	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRIK2	NM_021956	exon5	c.G777T	p.L259L	.	.	240	9	175	0	.	157
GRIN2B	2904	bcgsc.ca	37	12	13768481	13768481	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRIN2B	NM_000834	exon6	c.C1446A	p.T482T	.	.	181	6	138	0	.	231
GRIN3A	116443	bcgsc.ca	37	9	104449351	104449351	+	Silent	SNP	G	G	T	rs148925855	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRIN3A	NM_133445	exon2	c.C831A	p.T277T	.	.	208	6	117	1	G|1.000;A|0.000	96
GRM1	2911	bcgsc.ca	37	6	146720261	146720261	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	GRM1,colon,carcinoma,0	GRM1	NM_000838	exon8	c.C2086A	p.R696R	.	.	66	4	80	0	.	1080
GRM7	2917	bcgsc.ca	37	3	7503305	7503305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GRM7	NM_000844	exon7	c.G1411T	p.G471W	.	.	70	4	74	0	.	526
GSK3B	2932	bcgsc.ca	37	3	119582429	119582429	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GSK3B	NM_002093	exon10	c.G972T	p.P324P	.	.	105	4	92	0	.	978
GSK3B	2932	bcgsc.ca	37	3	119624617	119624617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GSK3B	NM_002093	exon7	c.G798T	p.L266F	.	.	72	4	76	0	.	978
GTF2E1	2960	bcgsc.ca	37	3	120469643	120469643	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GTF2E1	NM_005513	exon2	c.G244A	p.A82T	.	.	151	5	148	0	.	91
GTF2IRD1	9569	ucsc.edu	37	7	73938448	73938448	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GTF2IRD1	NM_001199207	exon8	c.C1150A	p.R384R	.	.	47	4	41	1	.	94
GTF3C1	2975	bcgsc.ca	37	16	27494370	27494370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GTF3C1	NM_001520	exon26	c.C4078A	p.P1360T	.	.	63	5	65	0	.	94
GTF3C4	9329	bcgsc.ca	37	9	135553853	135553853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GTF3C4	NM_012204	exon2	c.G847T	p.G283C	.	.	95	6	66	0	.	91
GUCA1B	2979	ucsc.edu;bcgsc.ca	37	6	42152641	42152641	+	Missense_Mutation	SNP	C	C	T	rs141880594		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCA1B	NM_002098	exon4	c.G515A	p.R172Q	.	.	32	4	41	1	C|1.000;T|0.000	92
GUCY2C	2984	ucsc.edu;bcgsc.ca	37	12	14827660	14827660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GUCY2C	NM_004963	exon8	c.G983A	p.G328E	.	.	47	4	45	0	.	338
GYS2	2998	bcgsc.ca	37	12	21721922	21721922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GYS2	NM_021957	exon5	c.G700T	p.G234W	.	.	60	4	51	0	.	523
GZMK	3003	bcgsc.ca	37	5	54329691	54329691	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	GZMK	NM_002104	exon5	c.C732A	p.T244T	.	.	86	5	74	0	.	90
HADHB	3032	ucsc.edu;bcgsc.ca	37	2	26502181	26502181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HADHB	NM_000183	exon9	c.C809A	p.P270Q	.	.	32	4	30	0	.	154
HAUS2	55142	bcgsc.ca	37	15	42855965	42855965	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HAUS2	NM_018097	exon5	c.G408T	p.L136L	.	.	142	5	107	0	.	90
HAVCR1	26762	bcgsc.ca	37	5	156484938	156484938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HAVCR1	NM_001099414	exon2	c.T17C	p.V6A	.	.	77	4	54	0	.	92
HAX1	10456	bcgsc.ca	37	1	154248173	154248173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HAX1	NM_006118	exon7	c.G836T	p.R279L	.	.	78	4	62	0	.	90
HBE1	3046	bcgsc.ca	37	11	5291056	5291056	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HBE1	NM_005330	exon1	c.A65G	p.E22G	.	.	56	4	42	0	.	90
HBS1L	10767	bcgsc.ca	37	6	135314906	135314906	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HBS1L	NM_006620	exon8	c.G1073T	p.G358V	.	.	100	4	91	0	.	92
HCRTR1	3061	ucsc.edu;bcgsc.ca	37	1	32092400	32092400	+	Missense_Mutation	SNP	G	G	T	rs202193411	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HCRTR1	NM_001525	exon9	c.G1097T	p.R366L	.	.	42	4	49	1	G|0.999;A|0.000	523
HDAC2	3066	bcgsc.ca	37	6	114266557	114266557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HDAC2	NM_001527	exon10	c.C1060A	p.Q354K	.	.	210	7	120	0	.	660
HDAC3	8841	bcgsc.ca	37	5	141007460	141007460	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HDAC3	NM_003883	exon10	c.G830T	p.G277V	.	.	69	4	69	0	.	227
HERC1	8925	bcgsc.ca	37	15	63930962	63930962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC1	NM_003922	exon62	c.G11915T	p.W3972L	.	.	54	4	55	0	.	666
HERC2	8924	bcgsc.ca	37	15	28441628	28441628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC2	NM_004667	exon51	c.C8099A	p.P2700H	.	.	189	6	183	1	.	234
HERC2	8924	bcgsc.ca	37	15	28443891	28443891	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC2	NM_004667	exon49	c.C7741A	p.R2581R	.	.	115	5	126	0	.	234
HERC2	8924	bcgsc.ca	37	15	28446680	28446680	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC2	NM_004667	exon48	c.G7638T	p.T2546T	.	.	178	6	163	0	.	234
HERC4	26091	bcgsc.ca	37	10	69682803	69682803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC4	NM_022079	exon26	c.C3059A	p.P1020Q	.	.	48	5	101	0	.	659
HERC4	26091	bcgsc.ca	37	10	69797850	69797850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HERC4	NM_022079	exon5	c.G463T	p.A155S	.	.	73	5	122	1	.	659
HGF	3082	bcgsc.ca	37	7	81335639	81335639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HGF	NM_000601	exon15	c.C1721A	p.P574H	.	.	71	4	48	0	.	516
HHLA2	11148	bcgsc.ca	37	3	108072526	108072526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HHLA2	NM_007072	exon4	c.T317A	p.L106Q	.	.	81	4	69	0	.	1
HIPK1	204851	bcgsc.ca	37	1	114504999	114504999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK1	NM_198268	exon9	c.C2042A	p.P681Q	.	.	81	4	56	0	.	361
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358704	33358704	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1305T	p.K435N	.	.	72	33	57	0	.	336
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33358706	33358706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIPK3	NM_001048200	exon4	c.A1307C	p.E436A	.	.	71	32	56	0	.	336
HIVEP3	59269	bcgsc.ca	37	1	42048101	42048101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HIVEP3	NM_024503	exon4	c.A2368G	p.R790G	.	.	85	5	117	0	.	157
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71148962	71148962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HK1	NM_033498	exon17	c.C1957T	p.L653L	.	.	57	46	162	0	.	252
HLA-DMA	3108	bcgsc.ca	37	6	32917077	32917077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HLA-DMA	NM_006120	exon4	c.T752C	p.I251T	.	.	75	4	84	0	.	90
HLA-DPA1	3113	bcgsc.ca	37	6	33041280	33041280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HLA-DPA1	NM_033554	exon1	c.T68C	p.L23P	.	.	55	5	41	0	.	91
HLA-DQA1	3117	bcgsc.ca	37	6	32609778	32609778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HLA-DQA1	NM_002122	exon3	c.T361C	p.S121P	.	.	77	4	79	0	.	90
HM13	81502	ucsc.edu;bcgsc.ca	37	20	30137135	30137135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HM13	NM_178581	exon6	c.G666T	p.W222C	.	.	33	4	31	0	.	153
HMBOX1	79618	bcgsc.ca	37	8	28908604	28908604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HMBOX1	NM_024567	exon11	c.C1195A	p.H399N	.	.	84	5	82	0	.	91
HMGCS2	3158	bcgsc.ca	37	1	120307119	120307119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HMGCS2	NM_005518	exon2	c.G235A	p.V79M	.	.	74	4	59	0	.	92
HMGXB3	22993	bcgsc.ca	37	5	149425061	149425061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HMGXB3	NM_014983	exon16	c.G2763T	p.E921D	.	.	50	4	48	0	.	24
HNRNPD	3184	bcgsc.ca	37	4	83277759	83277759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HNRNPD	NM_031370	exon7	c.G931T	p.G311C	.	.	223	6	154	0	.	22
HNRNPH1	3187	bcgsc.ca	37	5	179050102	179050102	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HNRNPH1	NM_001257293	exon2	c.C33T	p.F11F	.	.	78	4	62	0	.	22
HOMER1	9456	bcgsc.ca	37	5	78746855	78746855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HOMER1	NM_004272	exon3	c.T252A	p.H84Q	.	.	116	5	72	0	.	90
HOXB13	10481	ucsc.edu	37	17	46804296	46804296	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HOXB13	NM_006361	exon2	c.T711C	p.A237A	.	.	45	4	46	0	.	514
HSD17B4	3295	bcgsc.ca	37	5	118814610	118814610	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HSD17B4	NM_001199291	exon9	c.G591T	p.L197L	.	.	66	5	36	0	.	92
HSP90AA1	3320	bcgsc.ca	37	14	102549887	102549887	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HSP90AA1	NM_001017963	exon9	c.C1848A	p.I616I	.	.	38	4	58	0	.	949
HSPBAP1	79663	bcgsc.ca	37	3	122459594	122459594	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HSPBAP1	NM_024610	exon8	c.A1065G	p.K355K	.	.	143	5	134	0	.	227
HSPH1	10808	bcgsc.ca	37	13	31719701	31719701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HSPH1	NM_006644	exon11	c.A1583G	p.D528G	.	.	50	4	42	0	.	90
HTN1	3346	bcgsc.ca	37	4	70921251	70921251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HTN1	NM_002159	exon5	c.G139A	p.G47R	.	.	101	4	71	0	.	91
HTR1A	3350	bcgsc.ca	37	5	63257304	63257304	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HTR1A	NM_000524	exon1	c.C243A	p.T81T	.	.	67	5	86	0	.	94
HTR3D	200909	bcgsc.ca	37	3	183754556	183754556	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HTR3D	NM_001163646	exon5	c.T532C	p.S178P	.	.	73	6	55	0	.	90
HTRA4	203100	bcgsc.ca	37	8	38845568	38845568	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HTRA4	NM_153692	exon9	c.G1382T	p.R461L	.	.	93	7	52	0	.	90
HUWE1	10075	bcgsc.ca	37	X	53616730	53616730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HUWE1	NM_031407	exon36	c.A4238G	p.K1413R	.	.	70	4	131	0	.	280
HUWE1	10075	bcgsc.ca	37	X	53654377	53654377	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HUWE1	NM_031407	exon17	c.G1473T	p.M491I	.	.	92	4	226	1	.	280
HUWE1	10075	bcgsc.ca	37	X	53655716	53655716	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HUWE1	NM_031407	exon14	c.C1101A	p.I367I	.	.	107	5	179	0	.	280
HYAL1	3373	ucsc.edu;bcgsc.ca	37	3	50340219	50340219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYAL1	NM_033159	exon2	c.G169T	p.D57Y	.	.	44	4	61	0	.	278
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	16	70841965	70841965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	HYDIN	NM_001270974	exon86	c.A14884G	p.T4962A	.	.	28	6	56	0	.	92
ICA1L	130026	bcgsc.ca	37	2	203693683	203693683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ICA1L	NM_178231	exon4	c.G50A	p.R17K	.	.	87	4	66	0	.	90
IDS	3423	bcgsc.ca	37	X	148564457	148564457	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IDS	NM_000202	exon9	c.C1473T	p.S491S	.	.	113	5	98	0	.	130
IER5	51278	bcgsc.ca	37	1	181058150	181058150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IER5	NM_016545	exon1	c.C112A	p.L38M	.	.	41	4	64	0	.	227
IFNAR1	3454	bcgsc.ca	37	21	34715640	34715640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IFNAR1	NM_000629	exon4	c.C443A	p.P148H	.	.	108	5	102	0	.	91
IFT172	26160	bcgsc.ca	37	2	27681004	27681004	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IFT172	NM_015662	exon27	c.T2964C	p.R988R	.	.	67	4	77	0	.	154
IFT80	57560	bcgsc.ca	37	3	160095218	160095218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IFT80	NM_020800	exon4	c.G370T	p.V124F	.	.	197	7	159	0	.	522
IGF2R	3482	bcgsc.ca	37	6	160464190	160464190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IGF2R	NM_000876	exon12	c.G1491T	p.Q497H	.	.	96	5	75	0	.	118
IKBKAP	8518	ucsc.edu	37	9	111644461	111644461	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IKBKAP	NM_003640	exon30	c.G3229T	p.E1077X	.	.	34	4	20	1	.	318
IKBKB	3551	bcgsc.ca	37	8	42179461	42179461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IKBKB	NM_001556	exon17	c.G1736T	p.R579L	.	.	83	4	75	0	.	1164
IKBKB	3551	bcgsc.ca	37	8	42179874	42179874	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IKBKB	NM_001556	exon19	c.G1848T	p.V616V	.	.	63	4	74	1	.	1164
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81589305	81589305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL16	NM_001172128	exon13	c.G1939A	p.E647K	.	.	46	22	65	0	.	653
IL1RAP	3556	bcgsc.ca	37	3	190363624	190363624	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL1RAP	NM_001167929	exon10	c.T1338C	p.P446P	.	.	84	4	87	0	.	91
IL1RL1	9173	bcgsc.ca	37	2	102955370	102955370	+	Silent	SNP	C	C	A	rs190188722	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL1RL1	NM_016232	exon3	c.C135A	p.T45T	.	.	164	6	144	1	C|0.999;T|0.000	517
IL36RN	26525	ucsc.edu	37	2	113820207	113820207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IL36RN	NM_012275	exon5	c.G421T	p.G141C	.	.	30	4	21	0	.	91
INO80	54617	bcgsc.ca	37	15	41366626	41366626	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INO80	NM_017553	exon10	c.C1269A	p.T423T	.	.	196	7	154	0	.	72
INO80	54617	bcgsc.ca	37	15	41384329	41384329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INO80	NM_017553	exon5	c.G433T	p.D145Y	.	.	126	6	100	0	.	72
INSL5	10022	bcgsc.ca	37	1	67263752	67263752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INSL5	NM_005478	exon2	c.C352A	p.Q118K	.	.	78	4	79	0	.	90
INTS1	26173	bcgsc.ca	37	7	1532700	1532700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001080453	exon16	c.C2111A	p.A704D	.	.	59	4	56	0	.	.
INTS3	65123	bcgsc.ca	37	1	153745473	153745473	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INTS3	NM_023015	exon29	c.A2967G	p.K989K	.	.	84	5	52	0	.	93
INTS3	65123	broad.mit.edu	37	1	153719771	153719771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INTS3	NM_023015	exon5	c.G449T	p.R150L	.	.	655	12	504	0	.	93
INTS5	80789	bcgsc.ca	37	11	62415946	62415946	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INTS5	NM_030628	exon2	c.A1606G	p.T536A	.	.	71	4	84	0	.	92
INTS9	55756	bcgsc.ca	37	8	28654088	28654088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	INTS9	NM_018250	exon9	c.A829G	p.M277V	.	.	67	4	64	0	.	24
IPO8	10526	bcgsc.ca	37	12	30829441	30829441	+	Silent	SNP	G	G	T	rs202107765	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IPO8	NM_006390	exon6	c.C720A	p.T240T	.	.	101	5	91	0	G|0.999;A|0.000	227
IQCF3	401067	bcgsc.ca	37	3	51864746	51864746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IQCF3	NM_001207023	exon7	c.G394T	p.G132C	.	.	78	4	60	0	.	1
IQGAP2	10788	bcgsc.ca	37	5	75902128	75902128	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IQGAP2	NM_006633	exon12	c.C1357A	p.R453R	.	.	66	4	59	0	.	96
IQSEC2	23096	ucsc.edu	37	X	53267414	53267414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IQSEC2	NM_001111125	exon12	c.C3190A	p.P1064T	.	.	48	4	103	2	.	178
IRAK2	3656	bcgsc.ca	37	3	10206641	10206641	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IRAK2	NM_001570	exon1	c.G3T	p.M1I	.	.	57	6	93	0	.	574
IREB2	3658	bcgsc.ca	37	15	78764113	78764113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IREB2	NM_004136	exon7	c.G730T	p.V244L	.	.	63	4	43	0	.	90
ITGA6	3655	bcgsc.ca	37	2	173362814	173362814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGA6	NM_000210	exon24	c.T3100C	p.F1034L	.	.	150	5	136	0	.	227
ITGA8	8516	broad.mit.edu;bcgsc.ca	37	10	15646247	15646247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGA8	NM_003638	exon20	c.C2078A	p.P693Q	.	.	282	9	215	2	.	230
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15658547	15658547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGA8	NM_003638	exon14	c.G1411T	p.G471C	.	.	52	5	50	0	.	230
ITGAD	3681	bcgsc.ca	37	16	31413512	31413512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGAD	NM_005353	exon6	c.G504T	p.Q168H	.	.	73	5	83	0	.	226
ITGB1	3688	bcgsc.ca	37	10	33209230	33209230	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGB1	NM_002211	exon10	c.G1212T	p.G404G	.	.	175	6	120	0	.	1084
ITGB7	3695	ucsc.edu;bcgsc.ca	37	12	53589937	53589937	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITGB7	NM_000889	exon7	c.C863T	p.S288L	.	.	31	4	46	1	.	231
ITM2B	9445	bcgsc.ca	37	13	48832368	48832368	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITM2B	NM_021999	exon4	c.T560C	p.I187T	.	.	120	5	93	0	.	90
ITPR1	3708	ucsc.edu	37	3	4695532	4695532	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITPR1	NM_001099952	exon12	c.C958A	p.P320T	.	.	45	4	56	0	.	710
ITPR2	3709	bcgsc.ca	37	12	26540456	26540456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ITPR2	NM_002223	exon55	c.T7768C	p.W2590R	.	.	62	4	40	0	.	542
IZUMO1	284359	bcgsc.ca	37	19	49245490	49245490	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	IZUMO1	NM_182575	exon7	c.C576T	p.G192G	.	.	80	5	87	0	.	91
JAG1	182	bcgsc.ca	37	20	10639186	10639186	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	JAG1	NM_000214	exon4	c.A624G	p.G208G	.	.	65	5	55	0	.	1273
JHDM1D	80853	bcgsc.ca	37	7	139829443	139829443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	JHDM1D	NM_030647	exon4	c.A409G	p.I137V	.	.	77	4	51	0	.	91
KANSL1	284058	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	44249095	44249095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001193466	exon2	c.A415G	p.R139G	.	.	38	10	34	0	.	.
KANSL3	55683	bcgsc.ca	37	2	97275266	97275266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001115016	exon12	c.G1353T	p.L451F	.	.	200	6	169	0	.	.
KAT6A	7994	bcgsc.ca	37	8	41791657	41791657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001099412	exon18	c.G4081A	p.E1361K	.	.	60	4	52	0	.	.
KATNBL1	79768	bcgsc.ca	37	15	34439632	34439632	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_024713	exon7	c.558-1G>T	.	.	.	180	9	148	1	.	.
KBTBD12	166348	ucsc.edu;bcgsc.ca	37	3	127682104	127682104	+	Missense_Mutation	SNP	C	C	A	rs149769275	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KBTBD12	NM_207335	exon4	c.C1565A	p.P522Q	.	.	48	4	42	0	C|1.000;T|0.000	23
KCNG3	170850	bcgsc.ca	37	2	42671572	42671572	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNG3	NM_133329	exon2	c.G813T	p.M271I	.	.	85	4	100	0	.	90
KCNH8	131096	bcgsc.ca	37	3	19498350	19498350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNH8	NM_144633	exon11	c.T1916C	p.L639P	.	.	142	6	166	1	.	524
KCNIP4	80333	bcgsc.ca	37	4	20736354	20736354	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNIP4	NM_025221	exon5	c.T374C	p.F125S	.	.	57	4	108	0	.	91
KCNJ1	3758	bcgsc.ca	37	11	128712296	128712296	+	Missense_Mutation	SNP	C	C	A	rs149689578	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNJ1	NM_000220	exon1	c.G17T	p.R6L	.	.	69	4	115	0	C|1.000;T|0.000	156
KCNK5	8645	bcgsc.ca	37	6	39163674	39163674	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNK5	NM_003740	exon2	c.A276G	p.A92A	.	.	133	5	101	0	.	227
KCNMA1	3778	ucsc.edu;bcgsc.ca	37	10	79010979	79010979	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNMA1	NM_002247	exon3	c.T576C	p.L192L	.	.	33	6	54	0	.	93
KCNQ2	3785	bcgsc.ca	37	20	62059746	62059746	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNQ2	NM_172106	exon10	c.C1191A	p.L397L	.	.	54	4	53	0	.	92
KCNRG	283518	bcgsc.ca	37	13	50594349	50594349	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNRG	NM_199464	exon3	c.677-1G>T	.	.	.	83	4	81	1	.	90
KCNU1	157855	bcgsc.ca	37	8	36642029	36642029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon1	c.C101T	p.T34I	.	.	125	5	99	0	.	23
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36763242	36763242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon20	c.G2026A	p.V676I	.	.	36	4	34	0	.	23
KCNU1	157855	ucsc.edu;bcgsc.ca	37	8	36776402	36776402	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KCNU1	NM_001031836	exon23	c.C2583A	p.I861I	.	.	44	5	37	0	.	23
KDELR3	11015	bcgsc.ca	37	22	38870599	38870599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KDELR3	NM_016657	exon2	c.T163C	p.F55L	.	.	64	4	66	0	.	92
KDM1B	221656	bcgsc.ca	37	6	18200770	18200770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KDM1B	NM_153042	exon11	c.G926A	p.G309E	.	.	71	4	68	0	.	91
KDM2B	84678	bcgsc.ca	37	12	121880088	121880088	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KDM2B	NM_032590	exon19	c.T3156C	p.P1052P	.	.	50	5	56	0	.	638
KDM3B	51780	bcgsc.ca	37	5	137754719	137754719	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KDM3B	NM_016604	exon14	c.A3513G	p.T1171T	.	.	115	5	142	0	.	542
KDM5A	5927	bcgsc.ca	37	12	394664	394664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KDM5A	NM_001042603	exon28	c.G5031A	p.M1677I	.	.	192	6	185	0	.	227
KHDRBS1	10657	bcgsc.ca	37	1	32498935	32498935	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KHDRBS1	NM_006559	exon4	c.G771T	p.P257P	.	.	93	5	79	0	.	227
KIAA0196	9897	ucsc.edu	37	8	126071769	126071769	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0196	NM_014846	exon13	c.C1537A	p.Q513K	.	.	37	5	23	0	.	92
KIAA0317	9870	ucsc.edu;bcgsc.ca	37	14	75139644	75139644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0317	NM_001039479	exon11	c.A1312G	p.T438A	.	.	52	4	46	0	.	525
KIAA0317	9870	bcgsc.ca	37	14	75140776	75140776	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0317	NM_001039479	exon9	c.C1119A	p.P373P	.	.	49	4	37	0	.	525
KIAA0368	23392	bcgsc.ca	37	9	114170852	114170852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0368	NM_001080398	exon25	c.A3185G	p.E1062G	.	.	94	4	55	2	.	68
KIAA0586	9786	bcgsc.ca	37	14	58949275	58949275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0586	NM_001244189	exon23	c.G3148T	p.G1050C	.	.	55	4	37	0	.	23
KIAA0825	285600	bcgsc.ca	37	5	93775707	93775707	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0825	NM_001145678	exon14	c.G2477T	p.R826I	.	.	169	7	182	1	.	91
KIAA0922	23240	bcgsc.ca	37	4	154525535	154525535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA0922	NM_001131007	exon25	c.C3371A	p.P1124H	.	.	190	8	157	1	.	92
KIAA1109	84162	bcgsc.ca	37	4	123192707	123192707	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1109	NM_015312	exon45	c.G8028T	p.V2676V	.	.	156	5	133	0	.	80
KIAA1211L	343990	ucsc.edu;bcgsc.ca	37	2	99443572	99443572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_207362	exon6	c.A601G	p.N201D	.	.	34	4	46	0	.	.
KIAA1217	56243	bcgsc.ca	37	10	24762971	24762971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1217	NM_019590	exon6	c.C1661A	p.P554H	.	.	37	6	38	0	.	98
KIAA1239	57495	bcgsc.ca	37	4	37447127	37447127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001144990	exon7	c.G3517A	p.D1173N	.	.	20	3	65	0	.	.
KIAA1586	57691	bcgsc.ca	37	6	56918271	56918271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1586	NM_020931	exon4	c.C974T	p.S325L	.	.	81	7	51	0	.	44
KIAA1704	55425	bcgsc.ca	37	13	45582940	45582940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1704	NM_018559	exon4	c.G334T	p.G112C	.	.	106	5	85	0	.	92
KIAA1804	0	ucsc.edu;bcgsc.ca	37	1	233489583	233489583	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1804	NM_032435	exon3	c.C1017A	p.T339T	.	.	54	5	83	0	.	523
KIAA1958	158405	ucsc.edu;bcgsc.ca	37	9	115337283	115337283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIAA1958	NM_133465	exon2	c.T923C	p.M308T	.	.	28	4	43	0	.	91
KIF1B	23095	bcgsc.ca	37	1	10357023	10357023	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF1B	NM_183416	exon19	c.C1792A	p.R598R	.	.	75	4	99	2	.	93
KIF20A	10112	bcgsc.ca	37	5	137520050	137520050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20A	NM_005733	exon12	c.A1475G	p.D492G	.	.	138	6	141	1	.	90
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469127	91469127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.A260G	p.Q87R	.	.	42	4	87	0	.	93
KIF20B	9585	ucsc.edu;bcgsc.ca	37	10	91469218	91469218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF20B	NM_016195	exon4	c.G351T	p.K117N	.	.	42	4	70	0	.	93
KIF21A	55605	broad.mit.edu;bcgsc.ca	37	12	39726206	39726206	+	Missense_Mutation	SNP	C	C	A	rs121912586	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF21A	NM_001173464	exon21	c.G2861T	p.R954L	.	.	376	10	353	0	.	97
KIF23	9493	bcgsc.ca	37	15	69730657	69730657	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF23	NM_138555	exon15	c.G1626A	p.G542G	.	.	83	4	54	0	.	227
KIF2A	3796	bcgsc.ca	37	5	61661088	61661088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF2A	NM_001098511	exon15	c.G1486T	p.G496C	.	.	79	4	66	0	.	228
KIF3B	9371	bcgsc.ca	37	20	30898981	30898981	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF3B	NM_004798	exon2	c.C1401A	p.I467I	.	.	94	7	74	1	.	517
KIF4B	285643	bcgsc.ca	37	5	154396224	154396224	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF4B	NM_001099293	exon1	c.C2805T	p.V935V	.	.	109	6	134	0	.	1
KIF5A	3798	bcgsc.ca	37	12	57968890	57968890	+	Silent	SNP	C	C	A	rs149622711	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF5A	NM_004984	exon16	c.C1740A	p.I580I	.	.	57	4	76	0	C|1.000;T|0.000	517
KIF9	64147	bcgsc.ca	37	3	47316845	47316845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIF9	NM_182902	exon3	c.G229A	p.V77M	.	.	63	5	59	0	.	91
KIFAP3	22920	bcgsc.ca	37	1	170001052	170001052	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KIFAP3	NM_014970	exon8	c.G816T	p.V272V	.	.	281	7	220	0	.	91
KLHL11	55175	bcgsc.ca	37	17	40010623	40010623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KLHL11	NM_018143	exon2	c.T1496C	p.I499T	.	.	115	5	97	0	.	90
KLHL20	27252	bcgsc.ca	37	1	173735293	173735293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KLHL20	NM_014458	exon8	c.C1160T	p.P387L	.	.	131	5	138	0	.	187
KPNA3	3839	bcgsc.ca	37	13	50307110	50307110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KPNA3	NM_002267	exon3	c.G187T	p.D63Y	.	.	96	5	87	0	.	226
KRT18P55	284085	bcgsc.ca	37	17	26603673	26603673	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	54	5	50	0	.	.
KRT32	3882	bcgsc.ca	37	17	39623271	39623271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KRT32	NM_002278	exon1	c.C307A	p.L103I	.	.	43	4	46	0	.	90
KRT5	3852	bcgsc.ca	37	12	52910892	52910892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KRT5	NM_000424	exon6	c.A1217G	p.Q406R	.	.	111	6	108	0	.	90
KRT76	51350	ucsc.edu;bcgsc.ca	37	12	53169279	53169279	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	KRT76	NM_015848	exon2	c.C708A	p.S236S	.	.	49	5	53	0	.	154
L3MBTL1	26013	bcgsc.ca	37	20	42143995	42143995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	L3MBTL1	NM_032107	exon6	c.G651T	p.K217N	.	.	63	4	43	0	.	227
L3MBTL3	84456	bcgsc.ca	37	6	130370949	130370949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	L3MBTL3	NM_032438	exon5	c.G263T	p.W88L	.	.	52	4	48	0	.	96
LAD1	3898	bcgsc.ca	37	1	201352206	201352206	+	Missense_Mutation	SNP	C	C	T	rs115025356	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAD1	NM_005558	exon7	c.G1382A	p.R461Q	.	.	11	8	17	0	C|0.997;T|0.003	90
LAMA4	3910	bcgsc.ca	37	6	112441529	112441529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAMA4	NM_001105206	exon33	c.A4622G	p.K1541R	.	.	66	4	48	0	.	140
LAMC1	3915	bcgsc.ca	37	1	183085956	183085956	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAMC1	NM_002293	exon8	c.C1482A	p.P494P	.	.	107	7	116	0	.	252
LAMC1	3915	ucsc.edu	37	1	183111776	183111776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAMC1	NM_002293	exon28	c.C4681A	p.L1561M	.	.	44	4	34	0	.	252
LARGE	9215	bcgsc.ca	37	22	33828179	33828179	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LARGE	NM_004737	exon8	c.C860A	p.P287Q	.	.	98	5	72	1	.	92
LARS	51520	bcgsc.ca	37	5	145533320	145533320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LARS	NM_020117	exon12	c.C1207A	p.L403I	.	.	134	6	136	1	.	90
LAS1L	81887	ucsc.edu;bcgsc.ca	37	X	64744886	64744886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LAS1L	NM_031206	exon8	c.C1001A	p.P334H	.	.	37	4	71	0	.	196
LASP1	3927	bcgsc.ca	37	17	37034362	37034362	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LASP1	NM_006148	exon2	c.T93C	p.H31H	.	.	83	4	87	0	.	522
LCT	3938	bcgsc.ca	37	2	136567047	136567047	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LCT	NM_002299	exon8	c.A2870T	p.H957L	.	.	45	4	60	0	.	101
LEO1	123169	bcgsc.ca	37	15	52244164	52244164	+	Silent	SNP	C	C	A	rs142218056	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LEO1	NM_138792	exon9	c.G1488T	p.T496T	.	.	64	4	46	0	C|1.000;T|0.000	68
LGI2	55203	bcgsc.ca	37	4	25005391	25005391	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LGI2	NM_018176	exon8	c.C1320T	p.I440I	.	.	25	3	49	0	.	90
LINGO3	645191	ucsc.edu;bcgsc.ca	37	19	2290770	2290770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001101391	exon2	c.A1006G	p.S336G	.	.	47	5	47	0	.	.
LIPA	3988	bcgsc.ca	37	10	90974589	90974589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LIPA	NM_000235	exon10	c.A1196G	p.Q399R	.	.	15	3	23	0	.	90
LIPK	643414	bcgsc.ca	37	10	90503019	90503019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LIPK	NM_001080518	exon8	c.G901T	p.G301C	.	.	100	5	111	0	.	24
LMBRD1	55788	bcgsc.ca	37	6	70408961	70408961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LMBRD1	NM_018368	exon13	c.T1312A	p.Y438N	.	.	83	4	54	0	.	91
LMOD2	442721	bcgsc.ca	37	7	123302989	123302989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LMOD2	NM_207163	exon2	c.C1349A	p.P450Q	.	.	87	4	83	0	.	68
LOC100134259	0	bcgsc.ca	37	2	47085257	47085257	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	67	5	111	0	.	.
LOC100630923	0	ucsc.edu	37	7	102046236	102046236	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	23	4	23	0	.	.
LOC643923	0	ucsc.edu	37	11	107463071	107463071	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	40	4	65	0	.	.
LONRF1	91694	bcgsc.ca	37	8	12592838	12592838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LONRF1	NM_152271	exon7	c.A1523G	p.D508G	.	.	69	4	66	0	.	91
LONRF2	164832	bcgsc.ca	37	2	100919415	100919415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LONRF2	NM_198461	exon3	c.G889A	p.E297K	.	.	72	4	64	0	.	154
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118148215	118148215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LONRF3	NM_001031855	exon10	c.G2020A	p.V674I	.	.	127	60	89	0	.	289
LPHN2	23266	bcgsc.ca	37	1	82409123	82409123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LPHN2	NM_012302	exon5	c.C868A	p.Q290K	.	.	55	4	58	0	.	525
LPHN2	23266	bcgsc.ca	37	1	82434906	82434906	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LPHN2	NM_012302	exon13	c.G2517T	p.W839C	.	.	98	5	87	0	.	525
LPIN1	23175	bcgsc.ca	37	2	11911516	11911516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LPIN1	NM_001261428	exon5	c.C454A	p.L152M	.	.	125	5	122	0	.	156
LRBA	987	bcgsc.ca	37	4	151770054	151770054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRBA	NM_006726	exon26	c.T4255C	p.F1419L	.	.	100	4	125	1	.	157
LRCH2	57631	bcgsc.ca	37	X	114400902	114400902	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRCH2	NM_001243963	exon7	c.G1002T	p.M334I	.	.	155	5	126	0	.	131
LRIG2	9860	bcgsc.ca	37	1	113638907	113638907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRIG2	NM_014813	exon8	c.G1011T	p.L337F	.	.	202	7	135	0	.	229
LRIG3	121227	bcgsc.ca	37	12	59277326	59277326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRIG3	NM_153377	exon11	c.C1292T	p.S431L	.	.	79	5	63	0	.	229
LRP12	29967	bcgsc.ca	37	8	105511653	105511653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP12	NM_013437	exon4	c.G367T	p.G123C	.	.	230	7	103	0	.	90
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57548458	57548458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP1	NM_002332	exon8	c.C1201A	p.R401S	.	.	30	4	42	0	.	596
LRP1B	53353	bcgsc.ca	37	2	141625192	141625192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP1B	NM_018557	exon27	c.C4546A	p.L1516I	.	.	227	9	191	3	.	311
LRP2	4036	bcgsc.ca	37	2	170038108	170038108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRP2	NM_004525	exon52	c.G10019T	p.W3340L	.	.	80	4	104	0	.	175
LRRC10	376132	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70004150	70004150	+	Missense_Mutation	SNP	G	G	T	rs201257055	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC10	NM_201550	exon1	c.C469A	p.R157S	.	.	43	18	35	1	G|0.999;A|0.001	514
LRRC23	10233	bcgsc.ca	37	12	7015769	7015769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC23	NM_001135217	exon4	c.C433A	p.Q145K	.	.	69	4	86	0	.	23
LRRC37A4P	55073	broad.mit.edu	37	17	43587647	43587647	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	838	14	677	0	.	.
LRRC37A6P	387646	bcgsc.ca	37	10	27536623	27536623	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	19	3	27	0	.	.
LRRC45	201255	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79984801	79984801	+	Missense_Mutation	SNP	C	C	T	rs202017922		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC45	NM_144999	exon6	c.C688T	p.R230W	.	.	31	8	24	0	C|0.993;T|0.007	91
LRRC4C	57689	bcgsc.ca	37	11	40137622	40137622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC4C	NM_001258419	exon7	c.T221C	p.I74T	.	.	75	4	67	0	.	521
LRRC8D	55144	bcgsc.ca	37	1	90399159	90399159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRC8D	NM_018103	exon3	c.G532A	p.V178I	.	.	127	5	121	0	.	92
LRRCC1	85444	bcgsc.ca	37	8	86027355	86027355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRCC1	NM_033402	exon5	c.C565A	p.Q189K	.	.	94	4	81	0	.	90
LRRFIP1	9208	bcgsc.ca	37	2	238659861	238659861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRFIP1	NM_001137550	exon14	c.G814T	p.D272Y	.	.	77	4	66	0	.	153
LRRFIP2	9209	bcgsc.ca	37	3	37190449	37190449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRFIP2	NM_001134369	exon3	c.A26G	p.K9R	.	.	141	6	91	0	.	91
LRRIQ1	84125	bcgsc.ca	37	12	85554445	85554445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LRRIQ1	NM_001079910	exon24	c.C4775A	p.P1592Q	.	.	136	5	111	0	.	95
LSP1	4046	bcgsc.ca	37	11	1904686	1904686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LSP1	NM_001242932	exon5	c.G778A	p.E260K	.	.	74	6	100	0	.	90
LTBP3	4054	ucsc.edu;bcgsc.ca	37	11	65314942	65314942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LTBP3	NM_001130144	exon14	c.G2075T	p.R692L	.	.	51	5	37	0	.	91
LUC7L3	51747	bcgsc.ca	37	17	48822160	48822160	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LUC7L3	NM_006107	exon7	c.G679A	p.V227I	.	.	61	4	44	0	.	90
LXN	56925	bcgsc.ca	37	3	158386822	158386822	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LXN	NM_020169	exon4	c.G470T	p.W157L	.	.	311	8	248	1	.	90
LYAR	55646	bcgsc.ca	37	4	4281450	4281450	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LYAR	NM_017816	exon5	c.C264T	p.P88P	.	.	57	4	109	1	.	90
LZIC	84328	ucsc.edu;bcgsc.ca	37	1	9992006	9992006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	LZIC	NM_032368	exon6	c.T457C	p.L153L	.	.	43	4	38	0	.	90
MAATS1	89876	bcgsc.ca	37	3	119459406	119459406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_033364	exon13	c.G1544T	p.G515V	.	.	96	5	86	0	.	.
MACC1	346389	bcgsc.ca	37	7	20198612	20198612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MACC1	NM_182762	exon5	c.A1372G	p.K458E	.	.	79	4	48	0	.	93
MACF1	23499	bcgsc.ca	37	1	39776665	39776665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MACF1	NM_012090	exon27	c.A3278G	p.E1093G	.	.	79	4	51	0	.	165
MAEA	10296	ucsc.edu;bcgsc.ca	37	4	1321427	1321427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAEA	NM_001017405	exon5	c.T592C	p.F198L	.	.	21	4	32	0	.	91
MAGEB18	286514	bcgsc.ca	37	X	26157825	26157825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGEB18	NM_173699	exon2	c.G723T	p.R241S	.	.	66	4	118	1	.	130
MAGEC1	9947	bcgsc.ca	37	X	140996486	140996486	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGEC1	NM_005462	exon4	c.T3296C	p.F1099S	.	.	73	4	80	0	.	133
MAGI1	9223	bcgsc.ca	37	3	65344829	65344829	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGI1	NM_015520	exon25	c.3719-2A>G	.	.	.	22	3	27	0	.	661
MAGI2	9863	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	77649287	77649287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGI2	NM_012301	exon22	c.C3713A	p.P1238H	.	.	16	6	26	0	.	461
MAGI3	260425	bcgsc.ca	37	1	114225931	114225931	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAGI3	NM_001142782	exon21	c.C3741A	p.P1247P	.	.	137	5	115	1	.	524
MALL	7851	bcgsc.ca	37	2	110849241	110849241	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MALL	NM_005434	exon2	c.T212C	p.L71S	.	.	76	5	88	0	.	92
MAN2B2	23324	ucsc.edu;bcgsc.ca	37	4	6611693	6611693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAN2B2	NM_015274	exon13	c.C2175A	p.S725R	.	.	36	4	98	0	.	92
MAP1A	4130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43816465	43816465	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP1A	NM_002373	exon4	c.T2794C	p.L932L	.	.	30	7	36	0	.	141
MAP1LC3A	84557	bcgsc.ca	37	20	33147611	33147611	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP1LC3A	NM_181509	exon5	c.C287A	p.S96Y	.	.	75	5	83	0	.	90
MAP3K1	4214	bcgsc.ca	37	5	56170872	56170872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP3K1	NM_005921	exon10	c.A1700G	p.E567G	.	.	209	6	173	0	.	956
MAP3K8	1326	bcgsc.ca	37	10	30727938	30727938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP3K8	NM_001244134	exon2	c.C71A	p.S24Y	.	.	60	4	44	0	.	981
MAP4K3	8491	bcgsc.ca	37	2	39505585	39505585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP4K3	NM_003618	exon24	c.T1757C	p.L586P	.	.	173	6	153	1	.	550
MAP4K5	11183	bcgsc.ca	37	14	50904212	50904212	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAP4K5	NM_006575	exon25	c.T1864C	p.C622R	.	.	120	5	99	0	.	546
MAPK1	5594	bcgsc.ca	37	22	22143075	22143075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAPK1	NM_002745	exon5	c.T632C	p.I211T	.	.	72	4	60	0	.	1405
MAPK9	5601	bcgsc.ca	37	5	179688745	179688745	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAPK9	NM_002752	exon5	c.A389T	p.Y130F	.	.	144	5	144	0	.	1402
MAPKAPK5	8550	bcgsc.ca	37	12	112305444	112305444	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MAPKAPK5	NM_139078	exon4	c.T255C	p.S85S	.	.	61	4	64	0	.	1215
MARCH1	55016	bcgsc.ca	37	4	164450130	164450130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MARCH1	NM_001166373	exon8	c.T640C	p.F214L	.	.	127	7	135	0	.	501
MASTL	84930	bcgsc.ca	37	10	27459918	27459918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MASTL	NM_032844	exon8	c.C2030T	p.S677F	.	.	115	5	109	0	.	522
MATN3	4148	bcgsc.ca	37	2	20201783	20201783	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_002381	exon4	c.A975G	p.R325R	.	.	86	5	81	1	.	.
MATR3	9782	bcgsc.ca	37	5	138643118	138643118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MATR3	NM_018834	exon2	c.T14C	p.F5S	.	.	67	5	38	0	.	91
MBD3L3	653657	bcgsc.ca	37	19	7056547	7056547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001164425	exon2	c.C413A	p.P138Q	.	.	111	7	149	1	.	.
MBOAT2	129642	bcgsc.ca	37	2	9013407	9013407	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MBOAT2	NM_138799	exon8	c.A714G	p.L238L	.	.	82	4	69	0	.	90
MCHR1	2847	ucsc.edu;bcgsc.ca	37	22	41077417	41077417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCHR1	NM_005297	exon2	c.A754G	p.R252G	.	.	38	4	53	0	.	90
MCM4	4173	bcgsc.ca	37	8	48882536	48882536	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCM4	NM_182746	exon11	c.A1353G	p.E451E	.	.	100	4	89	0	.	230
MCM6	4175	ucsc.edu	37	2	136620230	136620230	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCM6	NM_005915	exon8	c.C1167T	p.D389D	.	.	39	4	40	0	.	227
MCM9	254394	bcgsc.ca	37	6	119147975	119147975	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCM9	NM_017696	exon10	c.G1785T	p.T595T	.	.	170	7	128	0	.	515
MCTP2	55784	bcgsc.ca	37	15	94928673	94928673	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MCTP2	NM_001159643	exon13	c.T1707C	p.D569D	.	.	85	4	59	0	.	93
MDC1	9656	bcgsc.ca	37	6	30680319	30680319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MDC1	NM_014641	exon5	c.G1400T	p.R467I	.	.	69	5	71	0	.	273
MED12	9968	bcgsc.ca	37	X	70352262	70352262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MED12	NM_005120	exon31	c.C4289A	p.P1430H	.	.	55	5	78	1	.	272
MED12L	116931	bcgsc.ca	37	3	151083637	151083637	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MED12L	NM_053002	exon21	c.3081-1G>T	.	.	.	58	4	87	0	.	576
MED25	81857	bcgsc.ca	37	19	50339015	50339015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MED25	NM_030973	exon16	c.A1778G	p.Q593R	.	.	67	4	91	0	.	91
MEF2A	4205	ucsc.edu;bcgsc.ca	37	15	100230447	100230447	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEF2A	NM_005587	exon8	c.G678A	p.G226G	.	.	31	4	35	0	.	455
MEF2D	4209	bcgsc.ca	37	1	156452307	156452307	+	Silent	SNP	G	G	T	rs147513428	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEF2D	NM_005920	exon3	c.C180A	p.T60T	.	.	176	6	156	1	G|1.000;A|0.000	659
MEF2D	4209	ucsc.edu	37	1	156444958	156444958	+	Silent	SNP	C	C	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEF2D	NM_005920	exon9	c.G948C	p.T316T	.	.	42	4	28	0	.	659
MEIS3P1	4213	bcgsc.ca	37	17	15690816	15690816	+	RNA	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	37	4	87	0	.	.
MEP1B	4225	bcgsc.ca	37	18	29787316	29787316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEP1B	NM_005925	exon8	c.C649A	p.Q217K	.	.	86	4	86	0	.	92
MEST	4232	bcgsc.ca	37	7	130137057	130137057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEST	NM_002402	exon3	c.C242A	p.S81Y	.	.	201	7	194	0	.	516
MET	4233	bcgsc.ca	37	7	116399396	116399396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MET	NM_001127500	exon10	c.G2270T	p.W757L	.	.	84	6	86	0	.	5874
METTL1	4234	ucsc.edu;bcgsc.ca	37	12	58163641	58163641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	METTL1	NM_005371	exon3	c.G373T	p.A125S	.	.	45	4	68	0	.	492
METTL14	57721	bcgsc.ca	37	4	119618433	119618433	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	METTL14	NM_020961	exon7	c.A600G	p.R200R	.	.	74	4	64	0	.	90
METTL17	64745	bcgsc.ca	37	14	21462197	21462197	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	METTL17	NM_022734	exon7	c.G672A	p.L224L	.	.	93	4	123	0	.	94
METTL25	84190	bcgsc.ca	37	12	82796900	82796900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032230	exon5	c.C1270A	p.Q424K	.	.	149	7	117	0	.	.
MEX3B	84206	ucsc.edu;bcgsc.ca	37	15	82336703	82336703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MEX3B	NM_032246	exon2	c.C508A	p.R170S	.	.	27	4	33	0	.	226
MFSD10	10227	ucsc.edu	37	4	2934883	2934883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MFSD10	NM_001120	exon3	c.G322T	p.G108W	.	.	49	6	132	1	.	68
MFSD4	148808	bcgsc.ca	37	1	205566962	205566962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MFSD4	NM_181644	exon8	c.A1352G	p.Q451R	.	.	99	5	163	0	.	92
MGA	23269	bcgsc.ca	37	15	42003066	42003066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MGA	NM_001080541	exon8	c.T2603C	p.L868P	.	.	71	4	46	0	.	522
MGA	23269	bcgsc.ca	37	15	42042304	42042304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MGA	NM_001164273	exon17	c.C6499A	p.L2167M	.	.	68	4	67	0	.	522
MGA	23269	bcgsc.ca	37	15	42042571	42042571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MGA	NM_001164273	exon17	c.G6766T	p.V2256F	.	.	59	4	44	2	.	522
MGAT4C	25834	bcgsc.ca	37	12	86373302	86373302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MGAT4C	NM_013244	exon7	c.G1202A	p.R401Q	.	.	84	4	59	0	.	93
MIB1	57534	bcgsc.ca	37	18	19345879	19345879	+	Silent	SNP	C	C	A	rs190657514	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MIB1	NM_020774	exon2	c.C376A	p.R126R	.	.	29	3	49	0	C|0.999;T|0.001	526
MICAL1	64780	ucsc.edu;bcgsc.ca	37	6	109771587	109771587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MICAL1	NM_022765	exon8	c.G1107A	p.M369I	.	.	41	4	43	0	.	154
MICALL1	85377	bcgsc.ca	37	22	38313779	38313779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MICALL1	NM_033386	exon4	c.G403A	p.V135M	.	.	31	5	28	0	.	153
MID1	4281	bcgsc.ca	37	X	10463667	10463667	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MID1	NM_001193278	exon4	c.A974T	p.Q325L	.	.	89	4	157	0	.	229
MIEN1	84299	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	37886014	37886014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032339	exon3	c.G188A	p.G63D	.	.	32	8	35	0	.	.
MIR548AE2	100616339	bcgsc.ca	37	16	48397456	48397456	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	85	5	109	1	.	.
MIR888	100126306	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	145076315	145076315	+	RNA	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	54	28	78	1	.	.
MKI67	4288	bcgsc.ca	37	10	129903893	129903893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MKI67	NM_002417	exon13	c.C6211A	p.Q2071K	.	.	97	5	196	0	.	519
MKI67	4288	bcgsc.ca	37	10	129907441	129907441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MKI67	NM_002417	exon13	c.C2663A	p.P888H	.	.	189	7	318	0	.	519
MLL3	58508	bcgsc.ca	37	7	151960123	151960123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MLL3	NM_170606	exon9	c.C1277A	p.P426Q	.	.	144	6	153	0	.	1398
MLL4	8085	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36216120	36216120	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MLL4	NM_014727	exon11	c.3529-1G>C	.	.	.	30	15	30	0	.	697
MLLT4	4301	bcgsc.ca	37	6	168317892	168317892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MLLT4	NM_001040000	exon19	c.G2668T	p.D890Y	.	.	73	4	51	0	.	685
MMGT1	93380	bcgsc.ca	37	X	135049610	135049610	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MMGT1	NM_173470	exon3	c.G175T	p.G59C	.	.	250	8	187	1	.	130
MMP21	118856	bcgsc.ca	37	10	127459086	127459086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MMP21	NM_147191	exon5	c.G1054A	p.V352M	.	.	73	4	139	0	.	228
MMRN1	22915	bcgsc.ca	37	4	90856436	90856436	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MMRN1	NM_007351	exon6	c.T1605A	p.A535A	.	.	96	5	84	0	.	94
MOB1B	92597	bcgsc.ca	37	4	71844928	71844928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001244766	exon6	c.C508A	p.Q170K	.	.	76	4	112	0	.	.
MORC1	27136	bcgsc.ca	37	3	108677857	108677857	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MORC1	NM_014429	exon28	c.A2910G	p.R970R	.	.	213	6	137	0	.	98
MORC1	27136	bcgsc.ca	37	3	108677945	108677945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MORC1	NM_014429	exon28	c.A2822G	p.E941G	.	.	69	4	66	1	.	98
MORC2	22880	bcgsc.ca	37	22	31328428	31328428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MORC2	NM_014941	exon25	c.G2573T	p.R858L	.	.	90	6	94	0	.	92
MPDZ	8777	bcgsc.ca	37	9	13114018	13114018	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPDZ	NM_003829	exon40	c.G5382T	p.V1794V	.	.	66	5	41	0	.	231
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123647656	123647656	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon16	c.A2478G	p.P826P	.	.	32	4	30	0	.	514
MPHOSPH9	10198	ucsc.edu;bcgsc.ca	37	12	123699320	123699320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MPHOSPH9	NM_022782	exon3	c.C602A	p.P201Q	.	.	42	4	46	0	.	514
MRE11A	4361	bcgsc.ca	37	11	94211934	94211934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRE11A	NM_005591	exon6	c.A511G	p.K171E	.	.	48	4	74	0	.	722
MROH2B	133558	bcgsc.ca	37	5	41047850	41047850	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_173489	exon17	c.C1701A	p.T567T	.	.	131	8	106	0	.	.
MRPL37	51253	bcgsc.ca	37	1	54682017	54682017	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRPL37	NM_016491	exon6	c.G1194T	p.V398V	.	.	122	6	137	0	.	90
MRPL47	57129	bcgsc.ca	37	3	179306745	179306745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRPL47	NM_020409	exon7	c.A668G	p.K223R	.	.	151	5	122	0	.	90
MRPL47	57129	bcgsc.ca	37	3	179320533	179320533	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRPL47	NM_020409	exon2	c.C151A	p.Q51K	.	.	50	5	52	0	.	90
MRPS22	56945	bcgsc.ca	37	3	139071493	139071493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRPS22	NM_020191	exon6	c.A737G	p.H246R	.	.	58	4	45	0	.	93
MRS2	57380	bcgsc.ca	37	6	24418693	24418693	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MRS2	NM_020662	exon9	c.C994A	p.R332R	.	.	137	6	122	1	.	68
MS4A14	84689	bcgsc.ca	37	11	60183472	60183472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MS4A14	NM_001261828	exon6	c.T1130C	p.V377A	.	.	113	6	103	0	.	90
MS4A6E	245802	bcgsc.ca	37	11	60107337	60107337	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MS4A6E	NM_139249	exon3	c.355-2A>G	.	.	.	63	4	62	0	.	90
MSANTD3-TMEFF1	100526694	bcgsc.ca	37	9	103323744	103323744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001198812	exon8	c.G1063T	p.G355C	.	.	135	5	68	0	.	.
MSH4	4438	bcgsc.ca	37	1	76282155	76282155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MSH4	NM_002440	exon6	c.G913T	p.G305C	.	.	259	7	237	0	.	660
MSH6	2956	bcgsc.ca	37	2	48028130	48028130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MSH6	NM_000179	exon4	c.G3008A	p.C1003Y	.	.	67	5	70	0	.	3014
MST1R	4486	bcgsc.ca	37	3	49939819	49939819	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MST1R	NM_001244937	exon1	c.C1224A	p.P408P	.	.	31	4	49	0	.	1406
MSTN	2660	bcgsc.ca	37	2	190922094	190922094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MSTN	NM_005259	exon3	c.T1018C	p.C340R	.	.	83	4	61	0	.	650
MTF2	22823	bcgsc.ca	37	1	93599316	93599316	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTF2	NM_007358	exon12	c.C1217A	p.P406H	.	.	28	4	27	0	.	92
MTFMT	123263	bcgsc.ca	37	15	65308791	65308791	+	Missense_Mutation	SNP	G	G	T	rs35302908	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	MTFMT,NS,carcinoma,0	MTFMT	NM_139242	exon6	c.C796A	p.R266S	.	.	131	5	106	0	G|0.990;A|0.010	24
MTFR2	113115	bcgsc.ca	37	6	136554536	136554536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_138419	exon7	c.A971G	p.Q324R	.	.	89	5	44	0	.	.
MTHFD2L	441024	bcgsc.ca	37	4	75041089	75041089	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTHFD2L	NM_001144978	exon3	c.C420A	p.V140V	.	.	125	5	88	0	.	91
MTMR7	9108	bcgsc.ca	37	8	17228658	17228658	+	Silent	SNP	G	G	T	rs150952836	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTMR7	NM_004686	exon3	c.C198A	p.T66T	.	.	148	5	126	0	G|1.000;A|0.000	91
MTOR	2475	bcgsc.ca	37	1	11187726	11187726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTOR	NM_004958	exon44	c.G6171T	p.M2057I	.	.	105	5	67	0	.	1439
MTRF1	9617	bcgsc.ca	37	13	41797468	41797468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTRF1	NM_004294	exon9	c.A1148G	p.E383G	.	.	135	5	104	0	.	90
MTTP	4547	bcgsc.ca	37	4	100528041	100528041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTTP	NM_000253	exon12	c.A1481G	p.E494G	.	.	67	4	54	0	.	93
MTUS2	23281	bcgsc.ca	37	13	29898824	29898824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MTUS2	NM_001033602	exon5	c.T2911C	p.S971P	.	.	85	4	73	0	.	218
MUC16	94025	bcgsc.ca	37	19	8997482	8997482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MUC16	NM_024690	exon59	c.G40940T	p.R13647L	.	.	142	6	132	0	.	566
MUC16	94025	bcgsc.ca	37	19	9056707	9056707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MUC16	NM_024690	exon3	c.C30739A	p.P10247T	.	.	77	6	92	0	.	566
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9006378	9006378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MUC16	NM_024690	exon45	c.C39640G	p.P13214A	.	.	42	19	48	0	.	566
MUC20	200958	bcgsc.ca	37	3	195452872	195452872	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_152673	exon3	c.A885G	p.E295E	.	.	85	5	92	0	.	.
MVB12B	89853	bcgsc.ca	37	9	129143361	129143361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001011703	exon3	c.G223A	p.G75S	.	.	52	4	39	0	.	.
MVB12B	89853	bcgsc.ca	37	9	129157899	129157899	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001011703	exon6	c.A585G	p.P195P	.	.	119	5	117	0	.	.
MXRA5	25878	bcgsc.ca	37	X	3240643	3240643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MXRA5	NM_015419	exon5	c.T3083C	p.V1028A	.	.	84	4	171	0	.	136
MXRA5	25878	bcgsc.ca	37	X	3241465	3241465	+	Missense_Mutation	SNP	G	G	T	rs140995456	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MXRA5	NM_015419	exon5	c.C2261A	p.P754Q	.	.	153	8	184	0	G|0.995;A|0.005	136
MYBBP1A	10514	bcgsc.ca	37	17	4449039	4449039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYBBP1A	NM_014520	exon15	c.T1939C	p.W647R	.	.	12	3	42	1	.	92
MYBPHL	343263	bcgsc.ca	37	1	109849549	109849549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYBPHL	NM_001265613	exon1	c.C65A	p.P22Q	.	.	76	5	123	0	.	92
MYCN	4613	bcgsc.ca	37	2	16085953	16085953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYCN	NM_005378	exon3	c.T1129C	p.S377P	.	.	79	5	67	0	.	1271
MYH14	79784	bcgsc.ca	37	19	50796844	50796844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYH14	NM_001145809	exon39	c.G5369T	p.R1790L	.	.	49	4	49	0	.	23
MYH6	4624	bcgsc.ca	37	14	23855798	23855798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYH6	NM_002471	exon33	c.G4685A	p.R1562Q	.	.	91	4	99	1	.	94
MYNN	55892	bcgsc.ca	37	3	169501285	169501285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYNN	NM_001185118	exon7	c.G1420T	p.G474C	.	.	234	6	142	0	.	91
MYO15A	51168	ucsc.edu	37	17	18058507	18058507	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO15A	NM_016239	exon45	c.G8308T	p.E2770X	.	.	20	4	30	0	.	97
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	27442787	27442787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO18A	NM_078471	exon12	c.G2122A	p.E708K	.	.	34	15	54	0	.	22
MYO1D	4642	ucsc.edu;bcgsc.ca	37	17	31075959	31075959	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO1D	NM_015194	exon12	c.T1533C	p.D511D	.	.	55	5	49	0	.	137
MYO1G	64005	bcgsc.ca	37	7	45011712	45011712	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO1G	NM_033054	exon7	c.729+2T>C	.	.	.	109	5	115	0	.	137
MYO3A	53904	bcgsc.ca	37	10	26357771	26357771	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO3A	NM_017433	exon12	c.T1128C	p.I376I	.	.	87	4	61	0	.	1007
MYO5A	4644	bcgsc.ca	37	15	52615631	52615631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO5A	NM_000259	exon36	c.A4646G	p.D1549G	.	.	72	4	67	0	.	93
MYO5A	4644	bcgsc.ca	37	15	52656848	52656848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO5A	NM_000259	exon24	c.T3212C	p.L1071P	.	.	101	5	91	0	.	93
MYO5C	55930	bcgsc.ca	37	15	52515826	52515826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO5C	NM_018728	exon29	c.A3542G	p.N1181S	.	.	113	6	117	0	.	145
MYO6	4646	bcgsc.ca	37	6	76596605	76596605	+	Missense_Mutation	SNP	A	A	G	rs142423106	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO6	NM_004999	exon25	c.A2552G	p.D851G	.	.	81	4	48	0	A|1.000;C|0.000	92
MYO9A	4649	bcgsc.ca	37	15	72168160	72168160	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO9A	NM_006901	exon32	c.A5951G	p.K1984R	.	.	99	5	64	0	.	93
MYO9B	4650	bcgsc.ca	37	19	17273828	17273828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO9B	NM_001130065	exon10	c.G1567T	p.G523W	.	.	89	4	100	0	.	67
MYO9B	4650	ucsc.edu;bcgsc.ca	37	19	17317097	17317097	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYO9B	NM_001130065	exon33	c.C5298T	p.A1766A	.	.	33	5	60	0	.	67
MYOF	26509	bcgsc.ca	37	10	95211893	95211893	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYOF	NM_133337	exon3	c.G150T	p.L50F	.	.	77	4	142	0	.	93
MYOF	26509	ucsc.edu;bcgsc.ca	37	10	95191205	95191205	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	MYOF	NM_133337	exon4	c.A305G	p.K102R	.	.	33	4	65	0	.	93
NABP2	79035	bcgsc.ca	37	12	56618706	56618706	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_024068	exon2	c.T66C	p.I22I	.	.	55	5	74	1	.	.
NADKD1	133686	bcgsc.ca	37	5	36197648	36197648	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NADKD1	NM_001085411	exon11	c.C1185A	p.S395S	.	.	111	5	93	0	.	92
NAIP	4671	bcgsc.ca	37	5	70307188	70307188	+	Silent	SNP	C	C	A	rs192546915	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NAIP	NM_004536	exon5	c.G582T	p.T194T	.	.	72	6	70	1	C|0.999;T|0.000	205
NALCN	259232	bcgsc.ca	37	13	102051423	102051423	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NALCN	NM_052867	exon2	c.G55T	p.G19C	.	.	92	5	55	1	.	167
NANP	140838	bcgsc.ca	37	20	25597100	25597100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NANP	NM_152667	exon2	c.G208T	p.D70Y	.	.	75	4	66	0	.	90
NAP1L3	4675	bcgsc.ca	37	X	92927179	92927179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NAP1L3	NM_004538	exon1	c.G1125T	p.K375N	.	.	141	6	143	0	.	131
NARG2	79664	bcgsc.ca	37	15	60740288	60740288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NARG2	NM_024611	exon11	c.C2176A	p.Q726K	.	.	60	4	64	0	.	227
NBAS	51594	bcgsc.ca	37	2	15523399	15523399	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBAS	NM_015909	exon29	c.A3300G	p.Q1100Q	.	.	153	7	144	1	.	94
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35731313	35731313	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBEA	NM_015678	exon21	c.A2750G	p.Y917C	.	.	116	109	111	1	.	144
NBN	4683	bcgsc.ca	37	8	90965884	90965884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBN	NM_002485	exon11	c.G1433A	p.C478Y	.	.	54	4	45	0	.	1395
NBR1	4077	bcgsc.ca	37	17	41342756	41342756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NBR1	NM_031862	exon9	c.T826C	p.S276P	.	.	109	7	112	0	.	130
NCAPD3	23310	bcgsc.ca	37	11	134022887	134022887	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NCAPD3	NM_015261	exon35	c.C4449A	p.A1483A	.	.	46	4	73	0	.	229
NCAPH	23397	bcgsc.ca	37	2	97020025	97020025	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NCAPH	NM_015341	exon9	c.G1107T	p.L369L	.	.	53	4	52	0	.	228
NCOA2	10499	bcgsc.ca	37	8	71086992	71086992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NCOA2	NM_006540	exon5	c.A362G	p.E121G	.	.	54	4	43	0	.	639
NCOA3	8202	bcgsc.ca	37	20	46268347	46268347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NCOA3	NM_181659	exon15	c.A2734G	p.T912A	.	.	75	4	78	0	.	229
ND2	0	bcgsc.ca	37	MT	5053	5053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	ENST00000361453	exon1	c.C584A	p.P195Q	.	.	123	6	177	1	.	.
ND2	0	bcgsc.ca	37	MT	5305	5316	+	In_Frame_Del	DEL	CCACCATCATAG	CCACCATCATAG	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	CCACCATCATAG	CCACCATCATAG	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	ENST00000361453	exon1	c.836_847del	p.279_283del	.	.	72	35	225	0	.	.
ND3	0	bcgsc.ca	37	MT	10114	10114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	ENST00000361227	exon1	c.T56C	p.I19T	.	.	147	136	166	0	.	.
NDC80	10403	bcgsc.ca	37	18	2585111	2585111	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NDC80	NM_006101	exon7	c.580-1G>T	.	.	.	46	4	39	0	.	91
NDRG2	57447	bcgsc.ca	37	14	21487840	21487840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NDRG2	NM_201537	exon10	c.C674A	p.P225H	.	.	159	5	175	0	.	154
NEB	4703	bcgsc.ca	37	2	152521300	152521300	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEB	NM_004543	exon43	c.C5316A	p.S1772S	.	.	161	5	181	1	.	145
NEDD4L	23327	bcgsc.ca	37	18	56058769	56058769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEDD4L	NM_001144967	exon30	c.A2803G	p.K935E	.	.	147	6	145	0	.	658
NEDD4L	23327	ucsc.edu	37	18	55996283	55996283	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEDD4L	NM_015277	exon10	c.A737C	p.H246P	.	.	70	7	91	2	.	658
NEK11	79858	bcgsc.ca	37	3	130852750	130852750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEK11	NM_024800	exon7	c.G597A	p.M199I	.	.	128	5	106	0	.	848
NEK1	4750	bcgsc.ca	37	4	170327820	170327820	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEK1	NM_001199397	exon32	c.C3301A	p.R1101S	.	.	150	5	114	0	.	361
NEK1	4750	bcgsc.ca	37	4	170327836	170327836	+	Silent	SNP	G	G	T	rs140408058	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEK1	NM_001199397	exon32	c.C3285A	p.P1095P	.	.	138	5	111	2	G|0.989;A|0.011	361
NEK5	341676	bcgsc.ca	37	13	52693504	52693504	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEK5	NM_199289	exon4	c.G165A	p.L55L	.	.	81	4	56	0	.	334
NELFCD	51497	bcgsc.ca	37	20	57562839	57562839	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_198976	exon4	c.C417A	p.R139R	.	.	53	4	52	1	.	.
NELL2	4753	bcgsc.ca	37	12	45173459	45173459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NELL2	NM_001145107	exon6	c.A743G	p.H248R	.	.	97	4	63	0	.	517
NELL2	4753	bcgsc.ca	37	12	45307599	45307599	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NELL2	NM_001145110	exon1	c.C21A	p.L7L	.	.	231	7	171	1	.	517
NEU3	10825	bcgsc.ca	37	11	74716778	74716778	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NEU3	NM_006656	exon3	c.C627A	p.I209I	.	.	48	4	55	0	.	24
NFASC	23114	ucsc.edu	37	1	204948558	204948558	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NFASC	NM_001160331	exon17	c.G2080T	p.G694C	.	.	43	4	84	0	.	139
NFAT5	10725	bcgsc.ca	37	16	69727623	69727623	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NFAT5	NM_138713	exon13	c.T3895C	p.S1299P	.	.	52	5	105	1	.	90
NFKB1	4790	bcgsc.ca	37	4	103522166	103522166	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NFKB1	NM_003998	exon16	c.G1752T	p.Q584H	.	.	104	5	84	0	.	912
NHSL2	340527	bcgsc.ca	37	X	71358678	71358678	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NHSL2	NM_001013627	exon6	c.T1280A	p.L427Q	.	.	59	3	63	0	.	108
NIPAL2	79815	bcgsc.ca	37	8	99224668	99224668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NIPAL2	NM_024759	exon6	c.A620G	p.H207R	.	.	82	4	36	0	.	90
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52513791	52513791	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NISCH	NM_001276293	exon12	c.A1329G	p.T443T	.	.	91	42	74	0	.	93
NKD1	85407	bcgsc.ca	37	16	50667326	50667326	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NKD1	NM_033119	exon10	c.C1047T	p.P349P	.	.	45	4	107	0	.	226
NKTR	4820	bcgsc.ca	37	3	42675103	42675103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NKTR	NM_005385	exon10	c.A805G	p.R269G	.	.	82	4	54	0	.	93
NKTR	4820	bcgsc.ca	37	3	42678527	42678527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NKTR	NM_005385	exon13	c.A1331G	p.K444R	.	.	123	4	102	0	.	93
NLGN3	54413	ucsc.edu;bcgsc.ca	37	X	70389119	70389119	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLGN3	NM_181303	exon8	c.G1719A	p.P573P	.	.	37	4	40	0	.	131
NLRP5	126206	broad.mit.edu;bcgsc.ca	37	19	56545050	56545050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NLRP5	NM_153447	exon9	c.C2590A	p.P864T	.	.	195	11	175	0	.	162
NMNAT1	64802	bcgsc.ca	37	1	10041129	10041129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NMNAT1	NM_022787	exon4	c.C340A	p.Q114K	.	.	69	5	67	0	.	90
NMT2	9397	bcgsc.ca	37	10	15170379	15170379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NMT2	NM_004808	exon8	c.G969T	p.Q323H	.	.	95	4	77	0	.	91
NOL7	51406	bcgsc.ca	37	6	13618336	13618336	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOL7	NM_016167	exon5	c.C465A	p.S155S	.	.	235	8	158	0	.	90
NOS1	4842	bcgsc.ca	37	12	117698312	117698312	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOS1	NM_000620	exon14	c.C2325A	p.A775A	.	.	99	5	91	1	.	154
NOS2	4843	ucsc.edu;bcgsc.ca	37	17	26099445	26099445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOS2	NM_000625	exon14	c.G1593T	p.K531N	.	.	46	4	58	0	.	156
NOSTRIN	115677	bcgsc.ca	37	2	169690801	169690801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOSTRIN	NM_001039724	exon7	c.C470A	p.S157Y	.	.	79	5	61	0	.	90
NOTCH3	4854	ucsc.edu	37	19	15295109	15295109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NOTCH3	NM_000435	exon16	c.C2563A	p.P855T	.	.	35	4	50	0	.	855
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66190697	66190697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon5	c.C802A	p.R268S	.	.	41	4	42	0	.	90
NPAS4	266743	ucsc.edu;bcgsc.ca	37	11	66191182	66191182	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAS4	NM_178864	exon6	c.C942A	p.I314I	.	.	40	4	39	1	.	90
NPAT	4863	bcgsc.ca	37	11	108058872	108058872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPAT	NM_002519	exon7	c.G591T	p.Q197H	.	.	64	4	100	0	.	117
NPHP1	4867	bcgsc.ca	37	2	110886820	110886820	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP1	NM_000272	exon18	c.C1827A	p.P609P	.	.	189	7	179	0	.	92
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110959033	110959033	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP1	NM_207181	exon2	c.T108C	p.A36A	.	.	93	42	68	0	.	92
NPHP3	27031	bcgsc.ca	37	3	132413757	132413757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP3	NM_153240	exon16	c.C2224A	p.Q742K	.	.	54	5	60	0	.	91
NPHP3	27031	bcgsc.ca	37	3	132431973	132431973	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP3	NM_153240	exon6	c.C1115A	p.P372Q	.	.	153	5	110	1	.	91
NPHP4	261734	bcgsc.ca	37	1	5965403	5965403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHP4	NM_015102	exon15	c.C1904T	p.S635L	.	.	112	6	111	0	.	515
NPHS2	7827	bcgsc.ca	37	1	179528840	179528840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPHS2	NM_014625	exon4	c.C508A	p.Q170K	.	.	127	7	92	0	.	90
NPLOC4	55666	bcgsc.ca	37	17	79580342	79580342	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPLOC4	NM_017921	exon5	c.386+2T>A	.	.	.	225	7	145	0	.	24
NPRL3	8131	bcgsc.ca	37	16	148150	148150	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPRL3	.	.	.	.	.	.	39	4	39	0	.	23
NPY1R	4886	bcgsc.ca	37	4	164247248	164247248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPY1R	NM_000909	exon2	c.A459T	p.R153S	.	.	48	4	32	0	.	523
NPY2R	4887	bcgsc.ca	37	4	156135977	156135977	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NPY2R	NM_000910	exon2	c.C886A	p.Q296K	.	.	95	4	88	0	.	523
NR2C1	7181	bcgsc.ca	37	12	95445551	95445551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NR2C1	NM_001032287	exon8	c.G952T	p.G318C	.	.	71	5	88	0	.	187
NR3C2	4306	ucsc.edu;bcgsc.ca	37	4	149181131	149181131	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NR3C2	NM_001166104	exon3	c.A1896G	p.E632E	.	.	57	5	49	0	.	154
NR5A2	2494	bcgsc.ca	37	1	200143233	200143233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NR5A2	NM_205860	exon8	c.C1521A	p.S507R	.	.	49	4	59	0	.	227
NRG3	10718	bcgsc.ca	37	10	84718776	84718776	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NRG3	NM_001010848	exon6	c.C1229A	p.S410Y	.	.	81	4	127	0	.	522
NRIP1	8204	bcgsc.ca	37	21	16338819	16338819	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NRIP1	NM_003489	exon4	c.C1695A	p.P565P	.	.	212	8	192	0	.	186
NRP1	8829	bcgsc.ca	37	10	33469050	33469050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NRP1	NM_003873	exon17	c.T2726C	p.L909S	.	.	144	6	130	0	.	525
NSD1	64324	bcgsc.ca	37	5	176715880	176715880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NSD1	NM_022455	exon21	c.A6212G	p.K2071R	.	.	74	5	74	0	.	188
NSMCE4A	54780	bcgsc.ca	37	10	123724880	123724880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NSMCE4A	NM_017615	exon5	c.A674G	p.E225G	.	.	73	4	116	0	.	90
NT5C3B	115024	bcgsc.ca	37	17	39983724	39983724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_052935	exon8	c.T722C	p.V241A	.	.	134	6	108	1	.	.
NT5DC1	221294	bcgsc.ca	37	6	116565131	116565131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NT5DC1	NM_152729	exon12	c.T1312C	p.Y438H	.	.	170	6	152	0	.	226
NTRK2	4915	bcgsc.ca	37	9	87359975	87359975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NTRK2	NM_001018065	exon11	c.G1283A	p.R428Q	.	.	170	6	144	0	.	1404
NUAK1	9891	bcgsc.ca	37	12	106480652	106480652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUAK1	NM_014840	exon3	c.A373G	p.K125E	.	.	58	4	59	0	.	359
NUAK2	81788	bcgsc.ca	37	1	205280934	205280934	+	Missense_Mutation	SNP	C	C	A	rs143710822	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUAK2	NM_030952	exon2	c.G251T	p.R84L	.	.	59	5	106	0	C|0.999;T|0.001	391
NUDT15	55270	bcgsc.ca	37	13	48619847	48619847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUDT15	NM_018283	exon3	c.G407T	p.W136L	.	.	84	5	72	0	.	90
NUGGC	389643	bcgsc.ca	37	8	27886883	27886883	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001010906	exon17	c.G2054T	p.R685L	.	.	63	4	52	0	.	.
NUMA1	4926	bcgsc.ca	37	11	71735337	71735337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUMA1	NM_006185	exon5	c.T191C	p.V64A	.	.	45	4	53	0	.	633
NUP133	55746	ucsc.edu;bcgsc.ca	37	1	229580661	229580661	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP133	NM_018230	exon25	c.G3334T	p.G1112C	.	.	34	4	49	0	.	271
NUP153	9972	bcgsc.ca	37	6	17646320	17646320	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP153	NM_005124	exon14	c.A1698T	p.L566F	.	.	71	4	64	0	.	637
NUP160	23279	bcgsc.ca	37	11	47813483	47813483	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP160	NM_015231	exon29	c.C3510A	p.P1170P	.	.	181	6	142	0	.	209
NUP160	23279	bcgsc.ca	37	11	47819337	47819337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP160	NM_015231	exon27	c.C3283A	p.R1095S	.	.	73	4	78	0	.	209
NUP205	23165	bcgsc.ca	37	7	135262763	135262763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP205	NM_015135	exon6	c.G868A	p.E290K	.	.	86	4	80	0	.	207
NUP214	8021	bcgsc.ca	37	9	134016042	134016042	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP214	NM_005085	exon11	c.C1239A	p.L413L	.	.	120	7	56	0	.	1131
NUP35	129401	bcgsc.ca	37	2	183995272	183995272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	NUP35	NM_138285	exon3	c.A338G	p.Q113R	.	.	128	5	85	0	.	204
NYAP1	222950	ucsc.edu;bcgsc.ca	37	7	100085902	100085902	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_173564	exon4	c.T558C	p.P186P	.	.	50	4	48	0	.	.
OAS3	4940	bcgsc.ca	37	12	113386928	113386928	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OAS3	NM_006187	exon6	c.A1292G	p.Q431R	.	.	31	4	26	0	.	1
OCIAD1	54940	broad.mit.edu;bcgsc.ca	37	4	48862751	48862751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OCIAD1	NM_001168254	exon9	c.A725G	p.N242S	.	.	69	5	118	0	.	68
OPRK1	4986	bcgsc.ca	37	8	54147549	54147549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OPRK1	NM_000912	exon3	c.G380T	p.G127V	.	.	59	4	80	0	.	70
OR10A2	341276	bcgsc.ca	37	11	6891045	6891045	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR10A2	NM_001004460	exon1	c.C60A	p.T20T	.	.	151	6	123	0	.	113
OR12D3	81797	bcgsc.ca	37	6	29342180	29342180	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR12D3	NM_030959	exon1	c.A885G	p.E295E	.	.	108	6	69	0	.	133
OR1C1	26188	bcgsc.ca	37	1	247921471	247921471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR1C1	NM_012353	exon1	c.C238A	p.Q80K	.	.	67	5	115	0	.	91
OR1M1	125963	bcgsc.ca	37	19	9203949	9203949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR1M1	NM_001004456	exon1	c.C29T	p.S10F	.	.	93	5	105	0	.	71
OR2A5	393046	bcgsc.ca	37	7	143747713	143747713	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR2A5	NM_012365	exon1	c.T219C	p.A73A	.	.	111	5	91	0	.	93
OR2B2	81697	bcgsc.ca	37	6	27879107	27879107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR2B2	NM_033057	exon1	c.C991A	p.L331I	.	.	93	6	53	0	.	68
OR2L2	26246	bcgsc.ca	37	1	248202042	248202042	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR2L2	NM_001004686	exon1	c.A473T	p.H158L	.	.	52	4	117	0	.	70
OR51E1	143503	bcgsc.ca	37	11	4674151	4674151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR51E1	NM_152430	exon2	c.C395A	p.P132Q	.	.	58	5	59	0	.	114
OR52A5	390054	bcgsc.ca	37	11	5153755	5153755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR52A5	NM_001005160	exon1	c.G118T	p.G40C	.	.	66	5	55	0	.	71
OR5A2	219981	bcgsc.ca	37	11	59189538	59189538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR5A2	NM_001001954	exon1	c.G889A	p.E297K	.	.	63	4	73	0	.	68
OR5D18	219438	bcgsc.ca	37	11	55587889	55587889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR5D18	NM_001001952	exon1	c.G784A	p.V262M	.	.	51	4	49	0	.	71
OR5K3	403277	bcgsc.ca	37	3	98109682	98109682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR5K3	NM_001005516	exon1	c.C173A	p.P58Q	.	.	174	6	175	0	.	68
OR5R1	219479	bcgsc.ca	37	11	56185473	56185473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR5R1	NM_001004744	exon1	c.C236A	p.P79Q	.	.	60	5	56	0	.	70
OR6C76	390326	bcgsc.ca	37	12	55820416	55820416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR6C76	NM_001005183	exon1	c.C379A	p.L127M	.	.	152	6	124	0	.	68
OR6Y1	391112	bcgsc.ca	37	1	158517243	158517243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OR6Y1	NM_001005189	exon1	c.T653C	p.V218A	.	.	86	4	56	0	.	69
OSBPL9	114883	bcgsc.ca	37	1	52253117	52253117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OSBPL9	NM_148909	exon23	c.A2123G	p.E708G	.	.	171	6	129	0	.	68
OSCP1	127700	bcgsc.ca	37	1	36915942	36915942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OSCP1	NM_145047	exon1	c.T29C	p.F10S	.	.	84	5	89	0	.	4
OSTCP1	202459	bcgsc.ca	37	6	159263108	159263108	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	76	4	84	0	.	.
OTC	5009	bcgsc.ca	37	X	38226613	38226613	+	Silent	SNP	C	C	A	rs144153859	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OTC	NM_000531	exon2	c.C147A	p.T49T	.	.	120	7	179	0	C|1.000;T|0.000	172
OTUD6B	51633	bcgsc.ca	37	8	92096330	92096330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OTUD6B	NM_016023	exon6	c.C875A	p.P292Q	.	.	133	5	104	0	.	433
OVCH1	341350	broad.mit.edu;bcgsc.ca	37	12	29628067	29628067	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OVCH1	NM_183378	exon14	c.G1527T	p.T509T	.	.	184	8	135	0	.	210
OXCT1	5019	bcgsc.ca	37	5	41853583	41853583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OXCT1	NM_000436	exon4	c.G352A	p.E118K	.	.	72	4	48	0	.	133
OXGR1	27199	bcgsc.ca	37	13	97639927	97639927	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	OXGR1	NM_080818	exon4	c.C87A	p.I29I	.	.	78	5	95	0	.	70
PAICS	10606	bcgsc.ca	37	4	57314654	57314654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PAICS	NM_001079525	exon5	c.T485C	p.L162P	.	.	175	6	181	0	.	68
PAICS	10606	bcgsc.ca	37	4	57325554	57325554	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PAICS	NM_001079525	exon10	c.C1149A	p.T383T	.	.	167	5	111	1	.	68
PAK3	5063	bcgsc.ca	37	X	110459647	110459647	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PAK3	NM_001128166	exon15	c.1408-2A>G	.	.	.	59	4	55	0	.	1043
PALB2	79728	bcgsc.ca	37	16	23649188	23649188	+	Missense_Mutation	SNP	G	G	T	rs62625272	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PALB2	NM_024675	exon3	c.C194A	p.P65Q	.	.	133	6	113	0	G|0.999;A|0.001	1351
PALLD	23022	bcgsc.ca	37	4	169604157	169604157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PALLD	NM_001166108	exon5	c.A1163G	p.K388R	.	.	113	5	88	0	.	94
PAN2	9924	bcgsc.ca	37	12	56716937	56716937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PAN2	NM_001127460	exon17	c.A2414G	p.K805R	.	.	77	4	49	0	.	702
PAN3	255967	bcgsc.ca	37	13	28840917	28840917	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PAN3	NM_175854	exon10	c.C1477A	p.R493R	.	.	52	5	42	0	.	69
PANK2	80025	bcgsc.ca	37	20	3891413	3891413	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PANK2	NM_153638	exon3	c.G1171A	p.G391S	.	.	81	5	61	0	.	115
PARD3B	117583	ucsc.edu;bcgsc.ca	37	2	205989190	205989190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARD3B	NM_205863	exon9	c.G1305T	p.E435D	.	.	43	4	40	0	.	140
PARP12	64761	bcgsc.ca	37	7	139757758	139757758	+	Missense_Mutation	SNP	G	G	T	rs138620579	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARP12	NM_022750	exon2	c.C403A	p.L135M	.	.	74	4	78	0	G|1.000;A|0.000	525
PARP4	143	bcgsc.ca	37	13	25017814	25017814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARP4	NM_006437	exon28	c.C3421A	p.L1141I	.	.	68	4	77	0	.	94
PARP6	56965	bcgsc.ca	37	15	72533832	72533832	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARP6	NM_020214	exon23	c.C1857A	p.I619I	.	.	60	4	61	0	.	522
PARP6	56965	bcgsc.ca	37	15	72559816	72559816	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PARP6	NM_020214	exon2	c.G3T	p.M1I	.	.	69	4	79	0	.	522
PASK	23178	ucsc.edu;bcgsc.ca	37	2	242066022	242066022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PASK	NM_015148	exon10	c.C2308T	p.P770S	.	.	61	5	88	0	.	536
PBDC1	51260	bcgsc.ca	37	X	75396827	75396827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_016500	exon5	c.G409T	p.A137S	.	.	87	4	110	0	.	.
PBX2	5089	bcgsc.ca	37	6	32155115	32155115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PBX2	NM_002586	exon6	c.C928A	p.Q310K	.	.	142	5	152	0	.	91
PBX3	5090	bcgsc.ca	37	9	128692034	128692034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PBX3	NM_006195	exon4	c.T617C	p.I206T	.	.	150	5	84	0	.	91
PCBP4	57060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	51993962	51993962	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCBP4	NM_033008	exon7	c.G465A	p.V155V	.	.	18	4	24	0	.	226
PCDH17	27253	bcgsc.ca	37	13	58299144	58299144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDH17	NM_001040429	exon4	c.G3196A	p.E1066K	.	.	66	4	61	0	.	97
PCDH7	5099	bcgsc.ca	37	4	30725691	30725691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDH7	NM_032457	exon1	c.G2647T	p.G883C	.	.	76	5	105	0	.	229
PCDH9	5101	bcgsc.ca	37	13	67801441	67801441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDH9	NM_203487	exon2	c.C1132A	p.P378T	.	.	90	4	82	0	.	96
PCDHA2	56146	bcgsc.ca	37	5	140175351	140175351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHA2	NM_031495	exon1	c.G802T	p.D268Y	.	.	90	4	69	0	.	94
PCDHA5	56143	bcgsc.ca	37	5	140201828	140201828	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHA5	NM_018908	exon1	c.G468T	p.A156A	.	.	68	4	81	0	.	137
PCDHAC2	56134	bcgsc.ca	37	5	140358589	140358589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHAC2	NM_018899	exon2	c.A2621G	p.H874R	.	.	48	4	47	0	.	26
PCDHB13	56123	bcgsc.ca	37	5	140595009	140595009	+	Silent	SNP	C	C	A	rs201145725	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHB13	NM_018933	exon1	c.C1314A	p.T438T	.	.	78	4	71	0	C|0.999;T|0.000	93
PCDHB5	26167	bcgsc.ca	37	5	140515941	140515941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHB5	NM_015669	exon1	c.G925A	p.E309K	.	.	81	4	55	0	.	95
PCDHGA10	56106	bcgsc.ca	37	5	140793966	140793966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_032090	exon1	c.G1224T	p.L408F	.	.	70	6	69	1	.	.
PCDHGA12	26025	ucsc.edu;bcgsc.ca	37	5	140810434	140810434	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHGA12	NM_032094	exon1	c.G108T	p.P36P	.	.	52	4	56	0	.	27
PCDHGB3	56102	bcgsc.ca	37	5	140752295	140752295	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_018924	exon1	c.A2334G	p.Q778Q	.	.	79	4	64	0	.	.
PCDHGC3	5098	bcgsc.ca	37	5	140855797	140855797	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCDHGC3	NM_032402	exon1	c.G114T	p.P38P	.	.	70	4	82	0	.	24
PCLO	27445	bcgsc.ca	37	7	82470820	82470820	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCLO	NM_014510	exon14	c.C14052A	p.T4684T	.	.	165	5	150	0	.	29
PCNT	5116	bcgsc.ca	37	21	47838143	47838143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PCNT	NM_006031	exon31	c.C6947T	p.T2316I	.	.	139	5	162	0	.	141
PDCD11	22984	bcgsc.ca	37	10	105202030	105202030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDCD11	NM_014976	exon32	c.C4768A	p.R1590S	.	.	46	5	75	0	.	275
PDDC1	347862	ucsc.edu;bcgsc.ca	37	11	773565	773565	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDDC1	NM_182612	exon4	c.T312C	p.S104S	.	.	45	4	75	0	.	90
PDE11A	50940	bcgsc.ca	37	2	178528624	178528624	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDE11A	NM_016953	exon19	c.G2616T	p.W872C	.	.	56	4	43	1	.	93
PDE7A	5150	bcgsc.ca	37	8	66651796	66651796	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDE7A	NM_001242318	exon6	c.G536T	p.S179I	.	.	121	5	85	0	.	90
PDE8A	5151	bcgsc.ca	37	15	85619092	85619092	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDE8A	NM_001243137	exon4	c.219-1G>T	.	.	.	73	4	42	0	.	94
PDIA6	10130	bcgsc.ca	37	2	10937210	10937210	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDIA6	NM_005742	exon4	c.C343A	p.Q115K	.	.	88	5	82	1	.	90
PDLIM5	10611	bcgsc.ca	37	4	95506745	95506745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDLIM5	NM_006457	exon6	c.A740G	p.Y247C	.	.	51	4	28	0	.	117
PDPK1	5170	bcgsc.ca	37	16	2647167	2647167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDPK1	NM_002613	exon13	c.C1445A	p.P482Q	.	.	60	5	56	0	.	1295
PDS5B	23047	bcgsc.ca	37	13	33241943	33241943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDS5B	NM_015032	exon7	c.A667G	p.K223E	.	.	190	6	141	0	.	94
PDZD2	23037	bcgsc.ca	37	5	32090481	32090481	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDZD2	NM_178140	exon19	c.A6927G	p.T2309T	.	.	71	4	53	0	.	563
PDZK1	5174	bcgsc.ca	37	1	145747063	145747063	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PDZK1	NM_002614	exon3	c.C20A	p.P7H	.	.	88	4	69	0	.	90
PELI1	57162	bcgsc.ca	37	2	64322403	64322403	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PELI1	NM_020651	exon8	c.691-1G>T	.	.	.	114	5	118	0	.	91
PER3	8863	bcgsc.ca	37	1	7895845	7895845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PER3	NM_016831	exon19	c.C3211A	p.L1071I	.	.	167	7	123	0	.	93
PEX5	5830	ucsc.edu;bcgsc.ca	37	12	7343827	7343827	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PEX5	NM_001131023	exon4	c.G234T	p.V78V	.	.	45	4	53	0	.	91
PFDN2	5202	ucsc.edu;bcgsc.ca	37	1	161071839	161071839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PFDN2	NM_012394	exon3	c.A287G	p.Q96R	.	.	45	5	28	0	.	90
PGBD3	267004	bcgsc.ca	37	10	50725018	50725018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PGBD3	NM_170753	exon2	c.T143A	p.F48Y	.	.	55	4	89	1	.	109
PHACTR4	65979	bcgsc.ca	37	1	28800111	28800111	+	Missense_Mutation	SNP	C	C	A	rs200234997	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHACTR4	NM_023923	exon6	c.C899A	p.P300Q	.	.	105	5	99	0	C|0.999;T|0.001	90
PHC3	80012	bcgsc.ca	37	3	169820423	169820423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHC3	NM_024947	exon14	c.C2677A	p.R893S	.	.	52	4	47	1	.	227
PHEX	5251	ucsc.edu;bcgsc.ca	37	X	22196426	22196426	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHEX	NM_000444	exon14	c.C1519A	p.L507I	.	.	45	4	67	0	.	132
PHF17	79960	bcgsc.ca	37	4	129752954	129752954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHF17	NM_199320	exon2	c.A41G	p.D14G	.	.	75	5	69	0	.	90
PHF3	23469	bcgsc.ca	37	6	64416643	64416643	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHF3	NM_015153	exon12	c.A3588G	p.E1196E	.	.	123	5	99	0	.	229
PHF3	23469	bcgsc.ca	37	6	64422689	64422689	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHF3	NM_015153	exon15	c.A5205G	p.Q1735Q	.	.	83	4	61	0	.	229
PHIP	55023	bcgsc.ca	37	6	79679599	79679599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHIP	NM_017934	exon27	c.T3158C	p.V1053A	.	.	122	5	98	0	.	579
PHKA1	5255	bcgsc.ca	37	X	71830999	71830999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	PHKA1,NS,carcinoma,-1	PHKA1	NM_002637	exon22	c.G2405T	p.R802L	.	.	249	7	210	0	.	134
PHTF2	57157	bcgsc.ca	37	7	77579038	77579038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHTF2	NM_001127357	exon15	c.G1901T	p.W634L	.	.	259	7	238	1	.	23
PHYHD1	254295	bcgsc.ca	37	9	131696079	131696079	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PHYHD1	NM_001100877	exon3	c.T211C	p.L71L	.	.	133	7	123	1	.	90
PI16	221476	ucsc.edu;bcgsc.ca	37	6	36926948	36926948	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PI16	NM_001199159	exon3	c.G199T	p.A67S	.	.	38	4	47	0	.	90
PI4KA	5297	ucsc.edu	37	22	21158678	21158678	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PI4KA	NM_058004	exon12	c.C1371T	p.N457N	.	.	44	4	33	0	.	454
PIGB	9488	bcgsc.ca	37	15	55643109	55643109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGB	NM_004855	exon10	c.A1336G	p.S446G	.	.	51	4	63	0	.	226
PIGM	93183	bcgsc.ca	37	1	160000504	160000504	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGM	NM_145167	exon1	c.A1026T	p.L342F	.	.	115	5	38	0	.	228
PIGM	93183	bcgsc.ca	37	1	160000907	160000907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGM	NM_145167	exon1	c.G623T	p.R208L	.	.	204	8	150	1	.	228
PIGN	23556	bcgsc.ca	37	18	59815544	59815544	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGN	NM_176787	exon8	c.C577A	p.Q193K	.	.	256	7	154	0	.	227
PIGQ	9091	ucsc.edu;bcgsc.ca	37	16	628482	628482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGQ	NM_148920	exon5	c.T1046C	p.L349P	.	.	27	4	44	0	.	226
PIGS	94005	ucsc.edu	37	17	26887078	26887078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIGS	NM_033198	exon7	c.G808T	p.V270L	.	.	39	4	26	0	.	289
PIH1D1	55011	bcgsc.ca	37	19	49949651	49949651	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIH1D1	NM_017916	exon9	c.G861T	p.P287P	.	.	115	5	139	1	.	90
PIK3CA	5290	bcgsc.ca	37	3	178927448	178927448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIK3CA	NM_006218	exon7	c.T1211C	p.L404P	.	.	274	8	190	0	.	27752
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178916692	178916692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIK3CA	NM_006218	exon2	c.C79A	p.P27T	.	.	80	38	74	0	.	27752
PIN1	5300	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9949168	9949168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIN1	NM_006221	exon2	c.G115T	p.G39C	.	.	46	17	55	0	.	227
PINX1	54984	bcgsc.ca	37	8	10683746	10683746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PINX1	NM_017884	exon5	c.G310T	p.D104Y	.	.	42	4	47	1	.	726
PITRM1	10531	bcgsc.ca	37	10	3201228	3201228	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PITRM1	NM_001242307	exon10	c.C1014A	p.T338T	.	.	187	6	173	0	.	91
PIWIL2	55124	bcgsc.ca	37	8	22167558	22167558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PIWIL2	NM_001135721	exon15	c.G1771A	p.E591K	.	.	87	4	63	0	.	91
PJA2	9867	bcgsc.ca	37	5	108714028	108714028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PJA2	NM_014819	exon4	c.G1160T	p.R387M	.	.	207	6	157	1	.	92
PKD1	5310	bcgsc.ca	37	16	2153770	2153770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKD1	NM_000296	exon23	c.T8288C	p.L2763P	.	.	54	4	73	1	.	91
PKD1L1	168507	bcgsc.ca	37	7	47906079	47906079	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKD1L1	NM_138295	exon25	c.C4030A	p.Q1344K	.	.	73	5	65	0	.	145
PKD1L1	168507	bcgsc.ca	37	7	47924256	47924256	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKD1L1	NM_138295	exon20	c.3206-1G>A	.	.	.	60	4	54	0	.	145
PKHD1	5314	bcgsc.ca	37	6	51768415	51768415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKHD1	NM_170724	exon43	c.A6976G	p.S2326G	.	.	72	4	67	0	.	603
PKHD1L1	93035	bcgsc.ca	37	8	110477431	110477431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKHD1L1	NM_177531	exon49	c.G8370T	p.W2790C	.	.	261	8	107	1	.	145
PKHD1L1	93035	broad.mit.edu;bcgsc.ca	37	8	110509296	110509296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKHD1L1	NM_177531	exon64	c.G10476T	p.Q3492H	.	.	324	9	215	0	.	145
PKP2	5318	bcgsc.ca	37	12	32974352	32974352	+	Missense_Mutation	SNP	G	G	T	rs199583774	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKP2	NM_004572	exon10	c.C2083A	p.R695S	.	.	79	4	54	0	G|0.999;A|0.000	92
PKP4	8502	bcgsc.ca	37	2	159490718	159490718	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PKP4	NM_001005476	exon9	c.T1479C	p.N493N	.	.	80	5	63	0	.	97
PLA1A	51365	bcgsc.ca	37	3	119347660	119347660	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLA1A	NM_015900	exon10	c.C1234A	p.R412R	.	.	56	4	53	0	.	92
PLA2R1	22925	bcgsc.ca	37	2	160889556	160889556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLA2R1	NM_001195641	exon4	c.C755T	p.S252F	.	.	116	5	121	0	.	93
PLAA	9373	bcgsc.ca	37	9	26928195	26928195	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLAA	NM_001031689	exon4	c.G468T	p.A156A	.	.	202	10	126	0	.	514
PLAT	5327	ucsc.edu	37	8	42042615	42042615	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLAT	NM_000930	exon7	c.C615T	p.T205T	.	.	53	4	60	0	.	226
PLCG1	5335	ucsc.edu	37	20	39802594	39802594	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLCG1	NM_182811	exon30	c.C3588A	p.Y1196X	.	.	35	4	52	0	.	911
PLCH1	23007	bcgsc.ca	37	3	155286028	155286028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLCH1	NM_001130960	exon6	c.G821A	p.G274D	.	.	213	4	155	0	.	151
PLEK	5341	bcgsc.ca	37	2	68607859	68607859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEK	NM_002664	exon3	c.T203C	p.V68A	.	.	70	6	45	0	.	91
PLEKHG2	64857	ucsc.edu	37	19	39913707	39913707	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHG2	NM_022835	exon18	c.T2013C	p.L671L	.	.	47	6	30	2	.	274
PLEKHG4B	153478	bcgsc.ca	37	5	151666	151666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHG4B	NM_052909	exon5	c.G876T	p.L292F	.	.	158	5	167	0	.	228
PLEKHG7	440107	bcgsc.ca	37	12	93162806	93162806	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHG7	NM_001004330	exon11	c.C982A	p.R328R	.	.	142	6	73	0	.	23
PLEKHH2	130271	broad.mit.edu;bcgsc.ca	37	2	43919652	43919652	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLEKHH2	NM_172069	exon4	c.187-1G>T	.	.	.	122	8	110	0	.	92
PLSCR2	57047	bcgsc.ca	37	3	146173168	146173168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLSCR2	NM_001199978	exon6	c.A398G	p.D133G	.	.	72	4	64	0	.	90
PLSCR5	389158	bcgsc.ca	37	3	146311927	146311927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001085420	exon4	c.T233C	p.M78T	.	.	70	4	54	0	.	.
PLXNB1	5364	ucsc.edu	37	3	48455400	48455400	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PLXNB1	NM_001130082	exon22	c.G4290T	p.L1430L	.	.	48	4	77	0	.	293
PMPCB	9512	bcgsc.ca	37	7	102949451	102949451	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PMPCB	NM_004279	exon8	c.A902T	p.E301V	.	.	123	5	121	0	.	94
PMPCB	9512	bcgsc.ca	37	7	102952281	102952281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PMPCB	NM_004279	exon11	c.G1267T	p.G423C	.	.	129	6	111	1	.	94
PMS1	5378	bcgsc.ca	37	2	190708728	190708728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PMS1	NM_001128144	exon6	c.G621T	p.K207N	.	.	58	5	50	0	.	1396
PNPLA6	10908	ucsc.edu	37	19	7614808	7614808	+	Missense_Mutation	SNP	T	T	C	rs184906487	by1000genomes	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PNPLA6	NM_001166111	exon16	c.T1651C	p.F551L	.	.	42	4	37	0	T|0.999;C|0.001	47
PNPT1	87178	bcgsc.ca	37	2	55872485	55872485	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PNPT1	NM_033109	exon22	c.A1821G	p.V607V	.	.	189	6	112	0	.	90
POLA1	5422	bcgsc.ca	37	X	24830977	24830977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLA1	NM_016937	exon29	c.G3275T	p.G1092V	.	.	78	4	148	0	.	229
POLB	5423	ucsc.edu	37	8	42227402	42227402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLB	NM_002690	exon13	c.T809C	p.L270P	.	.	31	5	19	0	.	1084
POLE2	5427	bcgsc.ca	37	14	50114033	50114033	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLE2	NM_002692	exon18	c.T1543C	p.S515P	.	.	139	6	109	0	.	229
POLR1A	25885	bcgsc.ca	37	2	86269013	86269013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLR1A	NM_015425	exon24	c.A3571G	p.R1191G	.	.	48	4	76	0	.	93
POLR1B	84172	bcgsc.ca	37	2	113310379	113310379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLR1B	NM_019014	exon7	c.C1144A	p.L382I	.	.	105	5	115	0	.	91
POLR3A	11128	bcgsc.ca	37	10	79742006	79742006	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLR3A	NM_007055	exon28	c.A3665G	p.K1222R	.	.	68	4	104	0	.	90
POLR3D	661	bcgsc.ca	37	8	22105398	22105398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POLR3D	NM_001722	exon4	c.G238A	p.E80K	.	.	65	4	42	0	.	90
PORCN	64840	bcgsc.ca	37	X	48369828	48369828	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PORCN	NM_203475	exon2	c.T282C	p.H94H	.	.	73	7	125	1	.	133
POSTN	10631	bcgsc.ca	37	13	38158958	38158958	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POSTN	NM_006475	exon8	c.G1003T	p.G335C	.	.	177	7	142	0	.	516
POT1	25913	bcgsc.ca	37	7	124469394	124469394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POT1	NM_015450	exon16	c.G1508A	p.C503Y	.	.	87	4	74	0	.	227
POTEH	23784	broad.mit.edu	37	22	16279277	16279277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	POTEH	NM_001136213	exon4	c.G946T	p.G316C	.	.	1043	16	897	2	.	1
PPCDC	60490	bcgsc.ca	37	15	75336852	75336852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPCDC	NM_021823	exon4	c.G357T	p.L119F	.	.	79	5	58	0	.	90
PPEF2	5470	ucsc.edu;bcgsc.ca	37	4	76809470	76809470	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPEF2	NM_006239	exon6	c.T429C	p.A143A	.	.	36	4	45	1	.	228
PPFIA2	8499	bcgsc.ca	37	12	81660797	81660797	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPFIA2	NM_001220473	exon30	c.3491-2A>G	.	.	.	137	5	115	1	.	231
PPFIA3	8541	ucsc.edu	37	19	49645290	49645290	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPFIA3	NM_003660	exon20	c.2463-1G>T	.	.	.	12	4	14	0	.	226
PPIC	5480	bcgsc.ca	37	5	122361649	122361649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPIC	NM_000943	exon4	c.G340T	p.G114C	.	.	79	5	65	0	.	91
PPID	5481	bcgsc.ca	37	4	159638191	159638191	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPID	NM_005038	exon4	c.G495T	p.V165V	.	.	171	6	138	0	.	226
PPIG	9360	bcgsc.ca	37	2	170488375	170488375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPIG	NM_004792	exon11	c.G861A	p.M287I	.	.	47	4	48	0	.	92
PPIL1	51645	bcgsc.ca	37	6	36839619	36839619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPIL1	NM_016059	exon2	c.G86T	p.W29L	.	.	77	4	84	0	.	91
PPIL3	53938	bcgsc.ca	37	2	201736180	201736180	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPIL3	NM_032472	exon7	c.C436A	p.R146R	.	.	102	5	112	0	.	90
PPP1R16B	26051	bcgsc.ca	37	20	37536785	37536785	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP1R16B	NM_015568	exon10	c.C1143A	p.T381T	.	.	71	4	95	0	.	228
PPP1R3B	79660	bcgsc.ca	37	8	8998883	8998883	+	Silent	SNP	G	G	T	rs138144708	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP1R3B	NM_001201329	exon2	c.C279A	p.T93T	.	.	104	6	109	0	G|1.000;A|0.000	228
PPP1R42	286187	bcgsc.ca	37	8	67926722	67926722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001013626	exon3	c.C235A	p.L79I	.	.	168	7	125	0	.	.
PPP1R8	5511	bcgsc.ca	37	1	28173591	28173591	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP1R8	NM_014110	exon6	c.G690T	p.V230V	.	.	99	4	94	1	.	226
PPP2CA	5515	bcgsc.ca	37	5	133537703	133537703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CA	NM_002715	exon3	c.C322A	p.R108S	.	.	170	6	123	0	.	1085
PPP2CA	5515	ucsc.edu;bcgsc.ca	37	5	133536762	133536762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CA	NM_002715	exon4	c.T490C	p.F164L	.	.	41	4	33	0	.	1085
PPP2CB	5516	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30643819	30643819	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2CB	NM_001009552	exon7	c.C862T	p.Q288X	.	.	38	12	36	0	.	658
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102391540	102391540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP2R5C	NM_001161725	exon16	c.C1599A	p.D533E	.	.	80	36	61	0	.	659
PPP3R1	5534	bcgsc.ca	37	2	68413737	68413737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PPP3R1	NM_000945	exon5	c.G328T	p.G110W	.	.	114	6	117	0	.	226
PRDM2	7799	bcgsc.ca	37	1	14075897	14075897	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRDM2	NM_015866	exon6	c.G426A	p.G142G	.	.	52	5	66	0	.	116
PRDX6	9588	bcgsc.ca	37	1	173456929	173456929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRDX6	NM_004905	exon5	c.T602C	p.L201P	.	.	54	4	53	0	.	186
PRICKLE2	166336	bcgsc.ca	37	3	64148780	64148780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRICKLE2	NM_198859	exon3	c.C170A	p.P57Q	.	.	104	5	108	0	.	95
PRKCB	5579	bcgsc.ca	37	16	23999847	23999847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRKCB	NM_212535	exon3	c.A224G	p.H75R	.	.	90	4	80	1	.	1530
PRKCSH	5589	ucsc.edu	37	19	11559433	11559433	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRKCSH	NM_002743	exon14	c.C1254T	p.L418L	.	.	32	4	30	0	.	90
PRKG1	5592	bcgsc.ca	37	10	53667312	53667312	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRKG1	NM_006258	exon5	c.T744C	p.L248L	.	.	87	5	165	0	.	523
PRKRIR	5612	bcgsc.ca	37	11	76062107	76062107	+	Missense_Mutation	SNP	C	C	A	rs41308469	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRKRIR	NM_004705	exon5	c.G2087T	p.R696L	.	.	290	10	223	1	C|0.953;T|0.047	93
PRKRIR	5612	bcgsc.ca	37	11	76063722	76063722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRKRIR	NM_004705	exon5	c.G472A	p.E158K	.	.	214	6	157	0	.	93
PROKR1	10887	ucsc.edu;bcgsc.ca	37	2	68882573	68882573	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PROKR1	NM_138964	exon2	c.C1047A	p.T349T	.	.	48	5	60	0	.	523
PROZ	8858	bcgsc.ca	37	13	113814492	113814492	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PROZ	NM_003891	exon2	c.234+1G>A	.	.	.	60	4	59	0	.	90
PRPF40A	55660	bcgsc.ca	37	2	153520464	153520464	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRPF40A	NM_017892	exon18	c.C1897A	p.L633I	.	.	96	5	74	0	.	68
PRR14L	253143	bcgsc.ca	37	22	32110836	32110836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRR14L	NM_173566	exon4	c.C2989A	p.Q997K	.	.	123	5	136	3	.	91
PRR14L	253143	bcgsc.ca	37	22	32134632	32134632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRR14L	NM_173566	exon2	c.T215C	p.V72A	.	.	78	4	66	0	.	91
PRRC2C	23215	bcgsc.ca	37	1	171553245	171553245	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015172	exon29	c.C7554A	p.P2518P	.	.	162	5	120	0	.	.
PRSS3	5646	bcgsc.ca	37	9	33797845	33797845	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRSS3	NM_007343	exon3	c.G390T	p.L130L	.	.	92	6	97	0	.	90
PRTG	283659	bcgsc.ca	37	15	55916675	55916675	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRTG	NM_173814	exon18	c.T2958C	p.N986N	.	.	116	5	116	1	.	92
PRUNE2	158471	bcgsc.ca	37	9	79326039	79326039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PRUNE2	NM_015225	exon8	c.G1151T	p.G384V	.	.	92	6	51	0	.	157
PSEN2	5664	ucsc.edu;bcgsc.ca	37	1	227078995	227078995	+	Silent	SNP	G	G	T	rs6426553	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PSEN2	NM_012486	exon10	c.G903T	p.T301T	.	.	30	4	64	0	G|0.962;T|0.038	658
PSG10P	653492	bcgsc.ca	37	19	43358101	43358101	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	97	4	101	0	.	.
PSKH2	85481	bcgsc.ca	37	8	87076425	87076425	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PSKH2	NM_033126	exon2	c.G621A	p.L207L	.	.	70	4	79	0	.	385
PSMA1	5682	bcgsc.ca	37	11	14539293	14539293	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PSMA1	NM_002786	exon5	c.151-2A>T	.	.	.	119	5	103	0	.	92
PSMA6	5687	bcgsc.ca	37	14	35782125	35782125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PSMA6	NM_002791	exon5	c.C448A	p.Q150K	.	.	123	5	80	0	.	226
PSMD11	5717	bcgsc.ca	37	17	30801804	30801804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PSMD11	NM_002815	exon8	c.G811T	p.V271L	.	.	94	5	70	0	.	91
PTBP2	58155	bcgsc.ca	37	1	97250786	97250786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTBP2	NM_021190	exon8	c.T880C	p.F294L	.	.	78	4	104	0	.	90
PTCH2	8643	ucsc.edu;bcgsc.ca	37	1	45296615	45296615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	PTCH2,NS,malignant_melanoma,+2	PTCH2	NM_001166292	exon6	c.A718G	p.K240E	.	.	41	4	61	0	.	851
PTGES2	80142	bcgsc.ca	37	9	130886089	130886089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTGES2	NM_025072	exon4	c.A578G	p.K193R	.	.	99	5	79	1	.	90
PTGES3	10728	bcgsc.ca	37	12	57066546	57066546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTGES3	NM_006601	exon3	c.T164C	p.L55P	.	.	113	5	53	0	.	90
PTGS2	5743	bcgsc.ca	37	1	186648266	186648266	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTGS2	NM_000963	exon3	c.C237A	p.T79T	.	.	83	6	157	0	.	227
PTH2R	5746	bcgsc.ca	37	2	209292990	209292990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTH2R	NM_005048	exon2	c.A140G	p.Q47R	.	.	85	5	78	0	.	502
PTK2B	2185	bcgsc.ca	37	8	27293867	27293867	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTK2B	NM_173174	exon20	c.1341+2T>A	.	.	.	146	5	171	0	.	1378
PTPDC1	138639	bcgsc.ca	37	9	96847584	96847584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPDC1	NM_001253829	exon2	c.G296T	p.R99L	.	.	78	6	56	0	.	227
PTPN13	5783	bcgsc.ca	37	4	87703396	87703396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPN13	NM_080685	exon37	c.C6020A	p.P2007H	.	.	202	7	171	1	.	230
PTPN22	26191	bcgsc.ca	37	1	114397587	114397587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPN22	NM_015967	exon8	c.A625G	p.I209V	.	.	94	5	100	0	.	227
PTPN2	5771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	12802149	12802149	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPN2	NM_001207013	exon9	c.A929C	p.K310T	.	.	98	51	66	0	.	652
PTPRB	5787	bcgsc.ca	37	12	70949025	70949025	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRB	NM_001109754	exon20	c.C5058A	p.S1686S	.	.	95	5	101	0	.	226
PTPRB	5787	bcgsc.ca	37	12	70986237	70986237	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRB	NM_001109754	exon7	c.G1605T	p.V535V	.	.	90	5	84	0	.	226
PTPRB	5787	bcgsc.ca	37	12	70988373	70988373	+	Missense_Mutation	SNP	C	C	A	rs182023786	by1000genomes;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRB	NM_001109754	exon6	c.G1390T	p.G464C	.	.	116	5	114	0	C|0.999;T|0.000	226
PTPRC	5788	bcgsc.ca	37	1	198704346	198704346	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRC	NM_002838	exon23	c.C2368A	p.P790T	.	.	234	8	346	1	.	295
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	61975392	61975392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRG	NM_002841	exon3	c.T284C	p.V95A	.	.	87	37	81	0	.	419
PTPRK	5796	bcgsc.ca	37	6	128291400	128291400	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRK	NM_001135648	exon31	c.T4313A	p.V1438E	.	.	74	4	55	0	.	231
PTPRM	5797	bcgsc.ca	37	18	8380370	8380370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRM	NM_001105244	exon29	c.T3863C	p.V1288A	.	.	93	5	71	0	.	228
PTPRM	5797	ucsc.edu	37	18	7955126	7955126	+	Silent	SNP	C	C	T	rs145680685		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRM	NM_001105244	exon7	c.C846T	p.P282P	.	.	44	4	45	0	C|1.000;T|0.000	228
PTPRQ	374462	bcgsc.ca	37	12	80888816	80888816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145026	exon8	c.T1129C	p.F377L	.	.	82	4	79	1	.	.
PTPRQ	374462	bcgsc.ca	37	12	80982202	80982202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145026	exon23	c.A4064G	p.N1355S	.	.	59	4	48	0	.	.
PTPRQ	374462	ucsc.edu	37	12	80935351	80935351	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145026	exon18	c.G2656T	p.G886X	.	.	45	4	35	0	.	.
PTPRR	5801	bcgsc.ca	37	12	71148018	71148018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRR	NM_002849	exon5	c.G691A	p.V231I	.	.	107	6	90	0	.	652
PTPRZ1	5803	bcgsc.ca	37	7	121624152	121624152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PTPRZ1	NM_001206838	exon8	c.G909T	p.K303N	.	.	56	4	45	0	.	699
PUM2	23369	bcgsc.ca	37	2	20508137	20508137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PUM2	NM_015317	exon5	c.C727A	p.Q243K	.	.	67	4	42	0	.	91
PUS7L	83448	bcgsc.ca	37	12	44130242	44130242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PUS7L	NM_001098614	exon7	c.A1667G	p.Q556R	.	.	162	6	124	0	.	91
PXDN	7837	bcgsc.ca	37	2	1695717	1695717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PXDN	NM_012293	exon3	c.G327T	p.L109F	.	.	156	6	122	0	.	166
PXK	54899	bcgsc.ca	37	3	58380742	58380742	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	PXK	NM_017771	exon8	c.G633T	p.R211R	.	.	128	5	94	0	.	334
QPRT	23475	bcgsc.ca	37	16	29708699	29708699	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	QPRT	NM_014298	exon4	c.C861A	p.A287A	.	.	20	4	19	0	.	90
QSOX1	5768	ucsc.edu;bcgsc.ca	37	1	180158782	180158782	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	QSOX1	NM_002826	exon9	c.T1113A	p.F371L	.	.	34	4	29	0	.	91
RAB26	25837	bcgsc.ca	37	16	2201866	2201866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB26	NM_014353	exon5	c.T425C	p.L142P	.	.	90	4	95	0	.	227
RAB27B	5874	bcgsc.ca	37	18	52555295	52555295	+	Missense_Mutation	SNP	C	C	A	rs77350395	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB27B	NM_004163	exon5	c.C413A	p.P138Q	.	.	78	4	59	0	C|0.999;T|0.001	227
RAB3GAP1	22930	bcgsc.ca	37	2	135851255	135851255	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB3GAP1	NM_001172435	exon5	c.G354T	p.L118L	.	.	170	6	136	0	.	92
RAB3GAP2	25782	ucsc.edu;bcgsc.ca	37	1	220364460	220364460	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAB3GAP2	NM_012414	exon14	c.C1437T	p.S479S	.	.	49	4	60	0	.	90
RABEP1	9135	bcgsc.ca	37	17	5280525	5280525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RABEP1	NM_004703	exon14	c.C2140A	p.Q714K	.	.	27	4	51	2	.	659
RABGAP1	23637	bcgsc.ca	37	9	125861021	125861021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RABGAP1	NM_012197	exon23	c.G2761T	p.D921Y	.	.	151	7	105	0	.	500
RAG1	5896	bcgsc.ca	37	11	36595612	36595612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAG1	NM_000448	exon2	c.C758A	p.A253D	.	.	39	4	25	0	.	230
RAI14	26064	bcgsc.ca	37	5	34826447	34826447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAI14	NM_001145525	exon18	c.T2671C	p.S891P	.	.	70	4	49	0	.	91
RALGPS1	9649	bcgsc.ca	37	9	129973012	129973012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RALGPS1	NM_001190729	exon13	c.G1076T	p.R359L	.	.	70	4	53	0	.	227
RANBP2	5903	bcgsc.ca	37	2	109347341	109347341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RANBP2	NM_006267	exon3	c.G252T	p.R84S	.	.	151	8	108	0	.	675
RANBP6	26953	bcgsc.ca	37	9	6014435	6014435	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RANBP6	NM_012416	exon1	c.T1173C	p.S391S	.	.	76	6	71	0	.	229
RAP1GDS1	5910	bcgsc.ca	37	4	99339827	99339827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAP1GDS1	NM_001100426	exon10	c.G1062T	p.M354I	.	.	167	5	172	0	.	660
RAPGEF2	9693	bcgsc.ca	37	4	160279285	160279285	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAPGEF2	NM_014247	exon24	c.T4494C	p.A1498A	.	.	97	5	107	0	.	637
RAPGEF6	51735	bcgsc.ca	37	5	130940330	130940330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RAPGEF6	NM_001164387	exon2	c.G126T	p.R42S	.	.	244	7	192	0	.	661
RASGRF2	5924	bcgsc.ca	37	5	80419582	80419582	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASGRF2	NM_006909	exon16	c.T2592C	p.P864P	.	.	54	4	66	0	.	725
RASGRP3	25780	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	33752434	33752434	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASGRP3	NM_170672	exon11	c.C1038A	p.A346A	.	.	26	5	19	0	.	661
RASSF4	83937	bcgsc.ca	37	10	45467273	45467273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASSF4	NM_032023	exon3	c.A115T	p.S39C	.	.	46	4	79	0	.	290
RASSF8	11228	bcgsc.ca	37	12	26218131	26218131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RASSF8	NM_007211	exon4	c.G804T	p.M268I	.	.	147	5	118	0	.	90
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48947605	48947606	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1	NM_000321	exon12	c.1192_1193insA	p.E398fs	.	.	311	276	228	0	.	3784
RB1CC1	9821	bcgsc.ca	37	8	53555084	53555084	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	RB1CC1,NS,carcinoma,-2	RB1CC1	NM_001083617	exon18	c.A4164G	p.E1388E	.	.	125	5	105	0	.	170
RB1CC1	9821	bcgsc.ca	37	8	53569761	53569761	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1CC1	NM_001083617	exon15	c.T2628A	p.G876G	.	.	210	10	145	1	.	170
RB1CC1	9821	bcgsc.ca	37	8	53580712	53580712	+	Missense_Mutation	SNP	G	G	T	rs148134800	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1CC1	NM_001083617	exon8	c.C1042A	p.R348S	.	.	124	5	74	0	G|1.000;A|0.000	170
RB1CC1	9821	bcgsc.ca	37	8	53580745	53580745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RB1CC1	NM_001083617	exon8	c.C1009T	p.P337S	.	.	87	4	54	0	.	170
RBL2	5934	bcgsc.ca	37	16	53499402	53499402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBL2	NM_005611	exon13	c.A1751G	p.K584R	.	.	91	5	98	0	.	841
RBM19	9904	bcgsc.ca	37	12	114358450	114358450	+	Missense_Mutation	SNP	G	G	T	rs111824990	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBM19	NM_001146699	exon19	c.C2351A	p.P784Q	.	.	81	5	58	0	G|0.500;A|0.500	95
RBM23	55147	bcgsc.ca	37	14	23380587	23380587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBM23	NM_001077352	exon2	c.T16C	p.F6L	.	.	67	4	68	0	.	91
RBM27	54439	bcgsc.ca	37	5	145665519	145665519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBM27	NM_018989	exon21	c.A3109G	p.T1037A	.	.	73	4	65	0	.	70
RBM5	10181	bcgsc.ca	37	3	50155869	50155869	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBM5	NM_005778	exon25	c.C2428A	p.R810R	.	.	40	4	37	0	.	278
RBPMS	11030	bcgsc.ca	37	8	30335353	30335353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RBPMS	NM_006867	exon3	c.G183T	p.Q61H	.	.	188	6	136	1	.	91
RCBTB1	55213	bcgsc.ca	37	13	50140840	50140840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RCBTB1	NM_018191	exon4	c.T191A	p.V64E	.	.	88	7	107	0	.	91
RDX	5962	bcgsc.ca	37	11	110134771	110134771	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RDX	NM_001260493	exon5	c.C381A	p.S127S	.	.	78	4	117	0	.	90
RECQL5	9400	bcgsc.ca	37	17	73646729	73646729	+	Silent	SNP	C	C	A	rs201473413	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RECQL5	NM_001003715	exon9	c.G1299T	p.A433A	.	.	52	5	38	0	C|0.999;T|0.000	538
RECQL	5965	bcgsc.ca	37	12	21643194	21643194	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RECQL	NM_032941	exon5	c.T333C	p.L111L	.	.	70	4	77	0	.	228
REEP1	65055	ucsc.edu	37	2	86479159	86479159	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	REEP1	NM_001164730	exon5	c.G359T	p.R120L	.	.	30	4	22	0	.	90
RELT	84957	ucsc.edu;bcgsc.ca	37	11	73106527	73106527	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RELT	NM_152222	exon11	c.G1284T	p.L428L	.	.	36	4	43	1	.	228
REPS2	9185	bcgsc.ca	37	X	17086559	17086559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	REPS2	NM_004726	exon10	c.T1244C	p.V415A	.	.	108	5	166	2	.	131
RERGL	79785	bcgsc.ca	37	12	18234306	18234306	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RERGL	NM_024730	exon6	c.G437T	p.R146L	.	.	91	4	93	0	.	659
REV3L	5980	bcgsc.ca	37	6	111697072	111697072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	REV3L	NM_002912	exon13	c.G2486T	p.R829L	.	.	242	8	182	0	.	294
RFPL3	10738	bcgsc.ca	37	22	32754094	32754094	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFPL3	NM_001098535	exon1	c.T36C	p.L12L	.	.	115	5	112	0	.	91
RFPL4A	342931	broad.mit.edu;mdanderson.org	37	19	56274197	56274197	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFPL4A	NM_001145014	exon3	c.C520T	p.R174X	.	.	268	46	233	0	.	68
RFTN2	130132	bcgsc.ca	37	2	198540106	198540106	+	Missense_Mutation	SNP	G	G	T	rs139544598		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFTN2	NM_144629	exon1	c.C77A	p.P26Q	.	.	164	6	123	0	G|1.000;T|0.000	90
RFWD3	55159	bcgsc.ca	37	16	74662502	74662502	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFWD3	NM_018124	exon11	c.G1817T	p.G606V	.	.	15	3	32	0	.	522
RFX4	5992	ucsc.edu	37	12	107114587	107114587	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFX4	NM_001206691	exon13	c.C1311T	p.L437L	.	.	46	4	62	0	.	91
RFX5	5993	bcgsc.ca	37	1	151317291	151317291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFX5	NM_000449	exon6	c.A266T	p.Y89F	.	.	171	6	108	0	.	91
RFX7	64864	bcgsc.ca	37	15	56388265	56388265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFX7	NM_022841	exon9	c.A1661G	p.E554G	.	.	79	5	78	0	.	90
RFX7	64864	bcgsc.ca	37	15	56436610	56436610	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RFX7	NM_022841	exon3	c.T267C	p.N89N	.	.	55	4	63	0	.	90
RGP1	9827	bcgsc.ca	37	9	35751699	35751699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RGP1	NM_001080496	exon7	c.A710G	p.E237G	.	.	127	5	128	0	.	23
RGS22	26166	bcgsc.ca	37	8	101011490	101011490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RGS22	NM_015668	exon19	c.G2949T	p.K983N	.	.	52	4	34	0	.	140
RHBDF1	64285	bcgsc.ca	37	16	108688	108688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RHBDF1	NM_022450	exon18	c.T2219C	p.I740T	.	.	43	4	51	0	.	92
RHEBL1	121268	bcgsc.ca	37	12	49462856	49462856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RHEBL1	NM_144593	exon2	c.G86A	p.G29D	.	.	67	4	61	0	.	659
RIC8B	55188	bcgsc.ca	37	12	107208801	107208801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RIC8B	NM_018157	exon3	c.C460T	p.R154W	.	.	73	5	67	0	.	91
RIF1	55183	bcgsc.ca	37	2	152289719	152289719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RIF1	NM_018151	exon10	c.C1054A	p.H352N	.	.	71	4	63	0	.	300
RMDN3	55177	bcgsc.ca	37	15	41037396	41037396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_018145	exon5	c.G586T	p.G196W	.	.	69	4	68	0	.	.
RNF121	55298	bcgsc.ca	37	11	71701689	71701689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF121	NM_018320	exon6	c.T553C	p.Y185H	.	.	60	5	58	0	.	226
RNF122	79845	ucsc.edu;bcgsc.ca	37	8	33416214	33416214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF122	NM_024787	exon2	c.C101A	p.P34Q	.	.	45	4	56	0	.	226
RNF138	51444	bcgsc.ca	37	18	29704751	29704751	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF138	NM_001191324	exon5	c.C504A	p.T168T	.	.	112	5	100	0	.	226
RNF157	114804	bcgsc.ca	37	17	74154542	74154542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF157	NM_052916	exon13	c.G1345T	p.D449Y	.	.	69	4	36	0	.	228
RNF175	285533	bcgsc.ca	37	4	154649387	154649387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF175	NM_173662	exon4	c.C373A	p.R125R	.	.	63	4	48	0	.	47
RNF220	55182	bcgsc.ca	37	1	45079853	45079853	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF220	NM_018150	exon3	c.G642T	p.A214A	.	.	75	5	71	0	.	228
RNF34	80196	bcgsc.ca	37	12	121854133	121854133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNF34	NM_194271	exon3	c.A181G	p.I61V	.	.	73	4	77	0	.	226
RNLS	55328	bcgsc.ca	37	10	90342031	90342031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RNLS	NM_018363	exon2	c.A152G	p.N51S	.	.	81	4	148	0	.	91
ROCK2	9475	bcgsc.ca	37	2	11427863	11427863	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ROCK2	NM_004850	exon3	c.142-1G>T	.	.	.	299	7	189	0	.	546
ROS1	6098	bcgsc.ca	37	6	117715412	117715412	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ROS1	NM_002944	exon10	c.G1077T	p.L359L	.	.	54	5	29	0	.	1353
RP1	6101	bcgsc.ca	37	8	55537386	55537386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RP1	NM_006269	exon4	c.C944T	p.S315F	.	.	95	4	53	0	.	102
RP1	6101	bcgsc.ca	37	8	55541028	55541028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RP1	NM_006269	exon4	c.G4586A	p.S1529N	.	.	155	5	106	0	.	102
RP1	6101	bcgsc.ca	37	8	55542124	55542124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RP1	NM_006269	exon4	c.T5682A	p.S1894R	.	.	67	4	68	0	.	102
RP1L1	94137	bcgsc.ca	37	8	10467795	10467795	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RP1L1	NM_178857	exon4	c.C3813A	p.T1271T	.	.	91	5	78	0	.	139
RPS14	6208	ucsc.edu	37	5	149823872	149823872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RPS14	NM_001025071	exon5	c.G433A	p.G145S	.	.	37	4	13	0	.	90
RRN3	54700	broad.mit.edu	37	16	15186409	15186409	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RRN3	NM_018427	exon2	c.G152T	p.R51L	.	.	251	8	246	0	.	91
RRP12	23223	bcgsc.ca	37	10	99150560	99150560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RRP12	NM_015179	exon5	c.C572A	p.S191Y	.	.	33	4	63	0	.	92
RSF1	51773	ucsc.edu;bcgsc.ca	37	11	77412597	77412597	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RSF1	NM_016578	exon6	c.C1677A	p.T559T	.	.	49	5	90	0	.	93
RSU1	6251	bcgsc.ca	37	10	16806399	16806399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RSU1	NM_012425	exon4	c.C271A	p.L91M	.	.	191	7	129	0	.	514
RTEL1	51750	ucsc.edu;bcgsc.ca	37	20	62311205	62311205	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RTEL1	NM_032957	exon13	c.C1113T	p.Y371Y	.	.	20	4	30	0	.	44
RTN3	10313	bcgsc.ca	37	11	63486890	63486890	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RTN3	NM_001265589	exon3	c.C916A	p.P306T	.	.	74	5	76	1	.	91
RTTN	25914	bcgsc.ca	37	18	67806938	67806938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RTTN	NM_173630	exon21	c.G2685T	p.L895F	.	.	99	6	76	0	.	141
RUNDC3B	154661	bcgsc.ca	37	7	87436749	87436749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RUNDC3B	NM_138290	exon10	c.C1069A	p.Q357K	.	.	112	6	80	0	.	69
RXFP1	59350	bcgsc.ca	37	4	159493904	159493904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RXFP1	NM_001253728	exon2	c.G104T	p.G35V	.	.	58	4	40	0	.	91
RXFP1	59350	bcgsc.ca	37	4	159572996	159572996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RXFP1	NM_001253727	exon18	c.T2144C	p.F715S	.	.	79	4	58	0	.	91
RYR1	6261	bcgsc.ca	37	19	38997540	38997540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RYR1	NM_001042723	exon57	c.A8764G	p.K2922E	.	.	53	4	53	1	.	100
RYR1	6261	bcgsc.ca	37	19	39070673	39070673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RYR1	NM_000540	exon100	c.A14416G	p.N4806D	.	.	70	4	59	0	.	100
RYR1	6261	bcgsc.ca	37	19	39076755	39076755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RYR1	NM_000540	exon104	c.G14893T	p.G4965C	.	.	56	5	73	0	.	100
RYR2	6262	bcgsc.ca	37	1	237837489	237837489	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RYR2	NM_001035	exon59	c.T8684C	p.F2895S	.	.	106	5	186	0	.	158
RYR2	6262	bcgsc.ca	37	1	237863613	237863613	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	RYR2	NM_001035	exon65	c.C9213A	p.T3071T	.	.	73	5	125	1	.	158
S100A2	6273	bcgsc.ca	37	1	153536232	153536232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	S100A2	NM_005978	exon2	c.A119G	p.K40R	.	.	90	4	37	0	.	651
SACS	26278	bcgsc.ca	37	13	23914243	23914243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SACS	NM_014363	exon10	c.T3772C	p.F1258L	.	.	95	5	64	0	.	298
SAMD12	401474	broad.mit.edu	37	8	119452192	119452192	+	Silent	SNP	C	C	A	rs144756754	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SAMD12	NM_207506	exon3	c.G201T	p.T67T	.	.	102	5	45	0	C|1.000;T|0.000	227
SAMD9	54809	bcgsc.ca	37	7	92733355	92733355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SAMD9	NM_001193307	exon2	c.G2056T	p.G686C	.	.	123	5	115	0	.	140
SAMD9L	219285	bcgsc.ca	37	7	92764688	92764688	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SAMD9L	NM_152703	exon5	c.C597A	p.F199L	.	.	200	6	232	0	.	94
SARDH	1757	ucsc.edu;bcgsc.ca	37	9	136561448	136561448	+	Silent	SNP	G	G	A	rs35013479	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SARDH	NM_007101	exon14	c.C1704T	p.A568A	.	.	48	4	49	0	G|0.985;A|0.015	90
SASH1	23328	bcgsc.ca	37	6	148846430	148846430	+	Missense_Mutation	SNP	A	A	G	rs138079007	byfrequency	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SASH1	NM_015278	exon11	c.A1213G	p.T405A	.	.	62	4	32	0	A|1.000;G|0.000	90
SATB1	6304	broad.mit.edu	37	3	18390844	18390844	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SATB1	NM_001195470	exon12	c.G2206T	p.G736C	.	.	150	5	112	0	.	228
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	18456693	18456693	+	Silent	SNP	T	T	C	rs61733671		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SATB1	NM_002971	exon5	c.A549G	p.Q183Q	.	.	105	41	104	0	T|0.987;C|0.013	228
SATB2	23314	bcgsc.ca	37	2	200233356	200233356	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SATB2	NM_015265	exon7	c.A672G	p.R224R	.	.	95	6	101	1	.	91
SBF1P1	100133234	ucsc.edu	37	8	56364222	56364222	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	49	21	42	0	.	.
SCAMP3	10067	bcgsc.ca	37	1	155230187	155230187	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCAMP3	NM_005698	exon4	c.C322A	p.R108R	.	.	66	4	48	0	.	93
SCAND3	114821	bcgsc.ca	37	6	28539834	28539834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCAND3	NM_052923	exon4	c.G3832A	p.E1278K	.	.	201	6	165	0	.	91
SCG2	7857	bcgsc.ca	37	2	224462545	224462545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCG2	NM_003469	exon2	c.C1456T	p.H486Y	.	.	101	6	104	0	.	69
SCGB2A2	4250	broad.mit.edu;ucsc.edu	37	11	62040428	62040428	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCGB2A2	NM_002411	exon3	c.244-1G>C	.	.	.	34	16	17	0	.	91
SCML1	6322	bcgsc.ca	37	X	17768083	17768083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCML1	NM_001037540	exon6	c.A373G	p.N125D	.	.	73	4	136	0	.	290
SCN11A	11280	bcgsc.ca	37	3	38961462	38961462	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN11A	NM_014139	exon7	c.C923A	p.P308H	.	.	78	4	64	0	.	99
SCN1A	6323	bcgsc.ca	37	2	166897854	166897854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN1A	NM_001165963	exon13	c.C2302A	p.P768T	.	.	66	4	58	0	.	147
SCN1B	6324	bcgsc.ca	37	19	35524461	35524461	+	Missense_Mutation	SNP	G	G	T	rs138381632	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN1B	NM_001037	exon3	c.G266T	p.R89L	.	.	72	4	97	0	G|1.000;A|0.000	91
SCN4A	6329	bcgsc.ca	37	17	62022128	62022128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN4A	NM_000334	exon21	c.C3817A	p.L1273I	.	.	67	6	60	0	.	93
SCN7A	6332	bcgsc.ca	37	2	167301474	167301474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN7A	NM_002976	exon12	c.G1424T	p.W475L	.	.	148	5	134	0	.	67
SCN7A	6332	bcgsc.ca	37	2	167327125	167327125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCN7A	NM_002976	exon6	c.G664T	p.G222C	.	.	110	7	106	1	.	67
SCPEP1	59342	bcgsc.ca	37	17	55065584	55065584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCPEP1	NM_021626	exon5	c.C479T	p.P160L	.	.	151	6	93	0	.	91
SCYL1	57410	ucsc.edu	37	11	65293458	65293458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SCYL1	NM_020680	exon3	c.G319A	p.V107M	.	.	35	4	29	0	.	333
SDAD1	55153	bcgsc.ca	37	4	76886968	76886968	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDAD1	NM_018115	exon13	c.C1053A	p.T351T	.	.	100	6	115	0	.	91
SDCBP2	27111	bcgsc.ca	37	20	1291512	1291512	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDCBP2	NM_080489	exon8	c.G756T	p.L252L	.	.	62	4	91	0	.	154
SDCCAG8	10806	bcgsc.ca	37	1	243437911	243437911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDCCAG8	NM_006642	exon4	c.C373A	p.Q125K	.	.	148	6	196	1	.	90
SDCCAG8	10806	ucsc.edu;bcgsc.ca	37	1	243471320	243471320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDCCAG8	NM_006642	exon8	c.G770T	p.C257F	.	.	47	4	70	0	.	90
SDHA	6389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	240575	240575	+	Missense_Mutation	SNP	G	G	T	rs192818312	by1000genomes;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHA	NM_004168	exon11	c.G1535T	p.R512L	.	.	157	67	176	0	G|0.999;A|0.001	226
SDHAF2	54949	broad.mit.edu;bcgsc.ca	37	11	61205239	61205239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDHAF2	NM_017841	exon2	c.A179G	p.D60G	.	.	76	6	62	0	.	92
SDK1	221935	bcgsc.ca	37	7	4167095	4167095	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SDK1	NM_152744	exon26	c.A3906G	p.E1302E	.	.	47	4	34	0	.	138
SEC16A	9919	bcgsc.ca	37	9	139370550	139370550	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_014866	exon3	c.C1518A	p.T506T	.	.	42	5	41	0	.	.
SEC24B	10427	bcgsc.ca	37	4	110448535	110448535	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEC24B	NM_006323	exon18	c.A3023G	p.D1008G	.	.	85	4	50	0	.	137
SELENBP1	8991	bcgsc.ca	37	1	151339215	151339215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SELENBP1	NM_001258289	exon6	c.C773A	p.P258H	.	.	83	7	43	0	.	90
SELL	6402	bcgsc.ca	37	1	169677730	169677730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SELL	NM_000655	exon3	c.G339T	p.W113C	.	.	91	5	92	0	.	90
SELP	6403	bcgsc.ca	37	1	169582886	169582886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SELP	NM_003005	exon4	c.A527T	p.E176V	.	.	48	4	80	0	.	94
SELPLG	6404	bcgsc.ca	37	12	109017377	109017377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SELPLG	NM_001206609	exon2	c.C755A	p.P252Q	.	.	185	8	214	0	.	90
SEMA3E	9723	bcgsc.ca	37	7	82997032	82997032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA3E	NM_012431	exon17	c.G2198T	p.W733L	.	.	238	9	219	1	.	93
SEMA3F	6405	bcgsc.ca	37	3	50211312	50211312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA3F	NM_004186	exon3	c.G199A	p.D67N	.	.	76	5	85	0	.	279
SEMA3F	6405	ucsc.edu;bcgsc.ca	37	3	50211496	50211496	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA3F	NM_004186	exon4	c.A285G	p.A95A	.	.	31	4	29	0	.	279
SEMA4A	64218	bcgsc.ca	37	1	156131201	156131201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA4A	NM_001193300	exon9	c.T875C	p.L292P	.	.	116	6	106	1	.	228
SEMA6D	80031	bcgsc.ca	37	15	48063221	48063221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEMA6D	NM_153618	exon19	c.C2461A	p.H821N	.	.	80	4	77	0	.	138
SEPP1	6414	bcgsc.ca	37	5	42800947	42800947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEPP1	.	.	.	.	.	.	113	6	93	0	.	68
SEPT14	346288	bcgsc.ca	37	7	55912263	55912263	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_207366	exon4	c.T324C	p.T108T	.	.	109	6	93	0	.	.
SEPT9	10801	bcgsc.ca	37	17	75471647	75471647	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SEPT9	NM_001113495	exon1	c.C47A	p.P16Q	.	.	58	4	45	0	.	659
SERAC1	84947	bcgsc.ca	37	6	158551518	158551518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SERAC1	NM_032861	exon9	c.G739T	p.G247C	.	.	164	5	112	1	.	90
SERF2-C15ORF63	0	bcgsc.ca	37	15	44091758	44091758	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	69	4	116	0	.	.
SERGEF	26297	bcgsc.ca	37	11	18010228	18010228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SERGEF	NM_012139	exon8	c.C760T	p.P254S	.	.	61	4	55	0	.	227
SERINC3	10955	bcgsc.ca	37	20	43135511	43135511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SERINC3	NM_006811	exon6	c.T740C	p.L247P	.	.	64	4	73	0	.	229
SERPIND1	3053	bcgsc.ca	37	22	21133767	21133767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SERPIND1	NM_000185	exon2	c.C167A	p.P56H	.	.	72	4	77	0	.	414
SETBP1	26040	bcgsc.ca	37	18	42532188	42532188	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SETBP1	NM_015559	exon4	c.C2883A	p.I961I	.	.	69	4	79	0	.	155
SETDB1	9869	bcgsc.ca	37	1	150913808	150913808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SETDB1	NM_012432	exon5	c.C451A	p.R151S	.	.	239	6	141	0	.	228
SETX	23064	bcgsc.ca	37	9	135202488	135202488	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SETX	NM_015046	exon10	c.C4497A	p.T1499T	.	.	147	7	84	0	.	93
SFPQ	6421	bcgsc.ca	37	1	35654984	35654984	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SFPQ	NM_005066	exon6	c.1416-1G>T	.	.	.	78	5	73	0	.	231
SFSWAP	6433	bcgsc.ca	37	12	132262713	132262713	+	Missense_Mutation	SNP	C	C	A	rs79031981	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SFSWAP	NM_001261411	exon14	c.C2246A	p.P749Q	.	.	70	5	64	0	C|0.988;T|0.012	91
SGIP1	84251	bcgsc.ca	37	1	67136694	67136694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGIP1	NM_032291	exon10	c.A500G	p.N167S	.	.	119	5	96	0	.	93
SGMS2	166929	bcgsc.ca	37	4	108824420	108824420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGMS2	NM_001136257	exon4	c.G605T	p.R202L	.	.	69	4	63	0	.	226
SGPL1	8879	bcgsc.ca	37	10	72610933	72610933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGPL1	NM_003901	exon4	c.A227G	p.K76R	.	.	67	4	76	0	.	226
SGSM2	9905	ucsc.edu;bcgsc.ca	37	17	2276333	2276333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SGSM2	NM_014853	exon16	c.T1875C	p.L625L	.	.	28	4	52	0	.	68
SH3BP4	23677	bcgsc.ca	37	2	235949779	235949779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SH3BP4	NM_014521	exon4	c.C366A	p.S122R	.	.	55	4	70	0	.	94
SH3KBP1	30011	bcgsc.ca	37	X	19650032	19650032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SH3KBP1	NM_031892	exon8	c.G847T	p.D283Y	.	.	88	4	181	0	.	130
SH3PXD2B	285590	bcgsc.ca	37	5	171780985	171780985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SH3PXD2B	NM_001017995	exon9	c.C692A	p.P231Q	.	.	67	4	48	0	.	94
SHANK1	50944	bcgsc.ca	37	19	51170151	51170151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHANK1	NM_016148	exon22	c.A5066G	p.E1689G	.	.	31	4	62	0	.	153
SHCBP1L	81626	bcgsc.ca	37	1	182920590	182920590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHCBP1L	NM_030933	exon2	c.G418T	p.D140Y	.	.	95	5	138	0	.	91
SHISA6	388336	ucsc.edu;bcgsc.ca	37	17	11455212	11455212	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHISA6	NM_207386	exon4	c.896-1G>T	.	.	.	43	4	47	0	.	67
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77357245	77357245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHROOM3	NM_020859	exon1	c.A40G	p.T14A	.	.	88	42	109	0	.	93
SHROOM4	57477	bcgsc.ca	37	X	50345677	50345677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SHROOM4	NM_020717	exon7	c.G3898T	p.G1300C	.	.	136	6	253	0	.	131
SI	6476	bcgsc.ca	37	3	164732932	164732932	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SI	NM_001041	exon33	c.C3978A	p.T1326T	.	.	231	6	142	0	.	104
SIGLEC5	8778	bcgsc.ca	37	19	52115525	52115525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIGLEC5	NM_003830	exon9	c.C1615A	p.P539T	.	.	88	5	86	1	.	92
SIGLEC7	27036	bcgsc.ca	37	19	51650022	51650022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIGLEC7	NM_014385	exon5	c.C1039T	p.P347S	.	.	57	4	82	1	.	153
SIL1	64374	bcgsc.ca	37	5	138463427	138463427	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIL1	NM_022464	exon3	c.105+1G>A	.	.	.	56	4	67	0	.	90
SIRPB1	10326	bcgsc.ca	37	20	1546808	1546808	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIRPB1	NM_006065	exon5	c.A1190G	p.K397R	.	.	24	3	28	0	.	91
SIRPB1	10326	bcgsc.ca	37	20	1551637	1551637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIRPB1	NM_006065	exon4	c.A898G	p.T300A	.	.	174	5	219	0	.	91
SIRT1	23411	bcgsc.ca	37	10	69647196	69647196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIRT1	NM_012238	exon2	c.A452G	p.E151G	.	.	74	4	86	0	.	226
SIRT5	23408	bcgsc.ca	37	6	13588650	13588650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SIRT5	NM_012241	exon4	c.C203A	p.P68Q	.	.	69	4	101	0	.	228
SLC10A7	84068	ucsc.edu;bcgsc.ca	37	4	147204345	147204345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC10A7	NM_001029998	exon10	c.G846T	p.L282F	.	.	49	5	41	0	.	22
SLC12A2	6558	bcgsc.ca	37	5	127510273	127510273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC12A2	NM_001046	exon20	c.G2844T	p.K948N	.	.	206	6	177	0	.	94
SLC12A5	57468	bcgsc.ca	37	20	44684792	44684792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC12A5	NM_001134771	exon22	c.C2860A	p.Q954K	.	.	51	4	81	1	.	156
SLC16A14	151473	bcgsc.ca	37	2	230910564	230910564	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC16A14	NM_152527	exon4	c.C1278A	p.P426P	.	.	67	4	95	0	.	96
SLC16A4	9122	bcgsc.ca	37	1	110919656	110919656	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC16A4	NM_004696	exon7	c.C1158A	p.A386A	.	.	126	7	108	0	.	93
SLC17A2	10246	bcgsc.ca	37	6	25921313	25921313	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC17A2	NM_005835	exon5	c.A483G	p.A161A	.	.	64	4	50	0	.	91
SLC19A2	10560	bcgsc.ca	37	1	169446763	169446763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC19A2	NM_006996	exon2	c.A437T	p.Y146F	.	.	62	4	53	0	.	90
SLC22A12	116085	bcgsc.ca	37	11	64368976	64368976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC22A12	NM_144585	exon10	c.A1615G	p.T539A	.	.	51	5	50	0	.	91
SLC22A24	283238	ucsc.edu;bcgsc.ca	37	11	62848565	62848565	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136506	exon9	c.C1425A	p.S475S	.	.	46	4	35	0	.	.
SLC22A3	6581	broad.mit.edu	37	6	160857827	160857827	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC22A3	NM_021977	exon6	c.G991T	p.E331X	.	.	151	9	121	0	.	517
SLC25A16	8034	ucsc.edu;bcgsc.ca	37	10	70253301	70253301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC25A16	NM_152707	exon5	c.C448T	p.P150S	.	.	44	4	82	0	.	90
SLC25A28	81894	ucsc.edu	37	10	101370935	101370935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC25A28	NM_031212	exon4	c.C766A	p.Q256K	.	.	40	4	75	0	.	90
SLC26A1	10861	bcgsc.ca	37	4	983122	983122	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC26A1	NM_022042	exon3	c.C1605T	p.P535P	.	.	52	4	135	0	.	91
SLC26A3	1811	bcgsc.ca	37	7	107430016	107430016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC26A3	NM_000111	exon6	c.T688C	p.F230L	.	.	81	4	45	0	.	94
SLC28A3	64078	bcgsc.ca	37	9	86909161	86909161	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC28A3	NM_001199633	exon9	c.T891C	p.T297T	.	.	85	4	66	0	.	94
SLC30A9	10463	bcgsc.ca	37	4	42025325	42025325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC30A9	NM_006345	exon6	c.G534T	p.L178F	.	.	113	6	201	0	.	91
SLC34A1	6569	ucsc.edu;bcgsc.ca	37	5	176821189	176821189	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC34A1	NM_003052	exon10	c.C1167A	p.I389I	.	.	44	4	56	0	.	91
SLC35B1	10237	bcgsc.ca	37	17	47783228	47783228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC35B1	NM_005827	exon4	c.G370T	p.V124F	.	.	89	4	69	0	.	90
SLC35E3	55508	bcgsc.ca	37	12	69158567	69158567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC35E3	NM_018656	exon5	c.A839G	p.Q280R	.	.	114	5	77	0	.	514
SLC35G6	643664	ucsc.edu	37	17	7386176	7386176	+	Silent	SNP	G	G	C	rs76776066	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001102614	exon2	c.G873C	p.V291V	.	.	96	16	151	8	.	.
SLC36A4	120103	bcgsc.ca	37	11	92881714	92881714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC36A4	NM_152313	exon11	c.G1504A	p.G502S	.	.	89	4	154	0	.	93
SLC36A4	120103	bcgsc.ca	37	11	92901257	92901257	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC36A4	NM_152313	exon7	c.T621C	p.V207V	.	.	71	5	127	0	.	93
SLC36A4	120103	ucsc.edu	37	11	92896006	92896006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC36A4	NM_152313	exon9	c.G903T	p.K301N	.	.	40	4	70	0	.	93
SLC39A11	201266	bcgsc.ca	37	17	70645342	70645342	+	Missense_Mutation	SNP	C	C	A	rs150096159	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC39A11	NM_001159770	exon8	c.G758T	p.R253L	.	.	51	5	38	0	C|0.995;T|0.005	91
SLC39A14	23516	bcgsc.ca	37	8	22262471	22262471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC39A14	NM_001135153	exon2	c.A248G	p.Q83R	.	.	22	4	33	0	.	90
SLC39A7	7922	bcgsc.ca	37	6	33171514	33171514	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC39A7	NM_006979	exon7	c.C1334A	p.P445Q	.	.	80	4	80	0	.	67
SLC40A1	30061	bcgsc.ca	37	2	190436520	190436520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC40A1	NM_014585	exon5	c.G435T	p.L145F	.	.	102	4	93	0	.	91
SLC44A3	126969	ucsc.edu;bcgsc.ca	37	1	95332918	95332918	+	Missense_Mutation	SNP	G	G	T	rs142020864	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC44A3	NM_001114106	exon12	c.G1427T	p.R476L	.	.	55	6	58	0	G|0.999;A|0.001	91
SLC4A11	83959	bcgsc.ca	37	20	3209528	3209528	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC4A11	NM_001174090	exon17	c.G2277A	p.L759L	.	.	65	6	78	0	.	91
SLC4A3	6508	bcgsc.ca	37	2	220501530	220501530	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC4A3	NM_201574	exon16	c.C2550A	p.T850T	.	.	97	6	105	0	.	157
SLC4A7	9497	bcgsc.ca	37	3	27436135	27436135	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC4A7	NM_003615	exon20	c.A2964G	p.K988K	.	.	84	4	90	0	.	94
SLC4A7	9497	bcgsc.ca	37	3	27475533	27475533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC4A7	NM_001258379	exon6	c.A640G	p.R214G	.	.	74	4	77	0	.	94
SLC4A8	9498	bcgsc.ca	37	12	51852378	51852378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC4A8	NM_001039960	exon7	c.A799G	p.N267D	.	.	156	6	115	0	.	95
SLC5A12	159963	bcgsc.ca	37	11	26742955	26742955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC5A12	NM_178498	exon1	c.T307C	p.F103L	.	.	98	5	91	1	.	92
SLC6A1	6529	bcgsc.ca	37	3	11067207	11067207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC6A1	NM_003042	exon8	c.G787T	p.G263W	.	.	29	4	30	0	.	92
SLC7A9	11136	bcgsc.ca	37	19	33321544	33321544	+	Silent	SNP	C	C	A	rs144616352	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC7A9	NM_001243036	exon13	c.G1446T	p.P482P	.	.	73	4	82	0	C|1.000;T|0.000	91
SLC8A1	6546	ucsc.edu;bcgsc.ca	37	2	40657282	40657282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC8A1	NM_001252624	exon1	c.G139T	p.G47C	.	.	81	8	58	0	.	93
SLC9A2	6549	bcgsc.ca	37	2	103274112	103274112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC9A2	NM_003048	exon2	c.G379T	p.G127C	.	.	219	6	283	2	.	157
SLC9A4	389015	bcgsc.ca	37	2	103149013	103149013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC9A4	NM_001011552	exon12	c.G2263T	p.D755Y	.	.	40	4	34	0	.	92
SLC9A9	285195	bcgsc.ca	37	3	143550941	143550941	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLC9A9	NM_173653	exon2	c.C298A	p.Q100K	.	.	149	5	135	0	.	229
SLC9B1	150159	bcgsc.ca	37	4	103870586	103870586	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001100874	exon5	c.212-2A>G	.	.	.	187	6	157	1	.	.
SLC9C1	285335	bcgsc.ca	37	3	111921245	111921245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_183061	exon18	c.T2174C	p.L725P	.	.	55	4	44	0	.	.
SLC9C2	284525	bcgsc.ca	37	1	173502824	173502824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_178527	exon17	c.C2087A	p.P696Q	.	.	230	7	202	0	.	.
SLCO1B3	28234	bcgsc.ca	37	12	21051418	21051418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLCO1B3	NM_019844	exon14	c.G1731T	p.M577I	.	.	237	6	208	1	.	155
SLCO2B1	11309	bcgsc.ca	37	11	74915456	74915456	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLCO2B1	NM_007256	exon14	c.T1961C	p.L654P	.	.	150	6	185	1	.	154
SLCO6A1	133482	bcgsc.ca	37	5	101735369	101735369	+	Silent	SNP	G	G	T	rs149826491	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLCO6A1	NM_173488	exon10	c.C1704A	p.P568P	.	.	219	7	197	0	G|0.999;A|0.000	96
SLIT2	9353	ucsc.edu;bcgsc.ca	37	4	20570613	20570613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLIT2	NM_004787	exon29	c.C3074A	p.P1025Q	.	.	37	4	48	0	.	521
SLIT3	6586	bcgsc.ca	37	5	168135080	168135080	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLIT3	NM_001271946	exon26	c.C2766A	p.A922A	.	.	91	5	160	3	.	95
SLITRK3	22865	bcgsc.ca	37	3	164906682	164906682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLITRK3	NM_014926	exon2	c.C1937A	p.P646H	.	.	81	4	81	0	.	100
SLMAP	7871	bcgsc.ca	37	3	57875819	57875819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLMAP	NM_007159	exon12	c.T1250C	p.L417P	.	.	206	7	154	0	.	90
SLPI	6590	bcgsc.ca	37	20	43882228	43882228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SLPI	NM_003064	exon2	c.A232G	p.T78A	.	.	76	5	88	2	.	515
SMAD6	4091	bcgsc.ca	37	15	67008781	67008781	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMAD6	NM_005585	exon3	c.T897C	p.S299S	.	.	138	5	114	0	.	415
SMAD9	4093	bcgsc.ca	37	13	37441471	37441471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMAD9	NM_001127217	exon4	c.G720T	p.Q240H	.	.	63	5	66	0	.	414
SMARCA1	6594	bcgsc.ca	37	X	128631870	128631870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMARCA1	NM_139035	exon11	c.G1456T	p.G486C	.	.	274	7	288	1	.	230
SMARCC2	6601	bcgsc.ca	37	12	56575566	56575566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMARCC2	NM_139067	exon9	c.G762T	p.E254D	.	.	100	5	88	0	.	229
SMC1B	27127	bcgsc.ca	37	22	45750839	45750839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMC1B	NM_148674	exon20	c.G3118T	p.A1040S	.	.	69	4	61	0	.	229
SMC1B	27127	bcgsc.ca	37	22	45802747	45802747	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMC1B	NM_148674	exon4	c.299-1G>T	.	.	.	69	5	34	0	.	229
SMC2	10592	bcgsc.ca	37	9	106857678	106857678	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMC2	NM_006444	exon2	c.T13C	p.S5P	.	.	108	5	71	0	.	210
SMC3	9126	bcgsc.ca	37	10	112360259	112360259	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMC3	NM_005445	exon22	c.T2490C	p.T830T	.	.	143	6	188	0	.	92
SMC3	9126	bcgsc.ca	37	10	112361756	112361756	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMC3	NM_005445	exon25	c.A2925G	p.E975E	.	.	55	5	94	0	.	92
SMOC1	64093	bcgsc.ca	37	14	70442480	70442480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMOC1	NM_001034852	exon4	c.G427T	p.G143W	.	.	76	6	54	0	.	92
SMURF2	64750	bcgsc.ca	37	17	62587202	62587202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SMURF2	NM_022739	exon5	c.G400T	p.V134L	.	.	160	5	82	0	.	661
SNAI1	6615	bcgsc.ca	37	20	48600771	48600771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNAI1	NM_005985	exon2	c.A493G	p.S165G	.	.	77	4	88	0	.	227
SNRPA1	6627	bcgsc.ca	37	15	101827193	101827193	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNRPA1	NM_003090	exon5	c.A379T	p.N127Y	.	.	63	5	43	0	.	226
SNRPD2	6633	bcgsc.ca	37	19	46191749	46191749	+	Silent	SNP	G	G	T	rs141788480	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNRPD2	NM_004597	exon2	c.C78A	p.T26T	.	.	171	8	165	1	G|1.000;A|0.000	90
SNTB1	6641	bcgsc.ca	37	8	121587392	121587392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNTB1	NM_021021	exon4	c.A1070G	p.D357G	.	.	136	5	91	1	.	228
SNTB2	6645	ucsc.edu;bcgsc.ca	37	16	69279693	69279693	+	Missense_Mutation	SNP	C	C	A	rs200536488	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNTB2	NM_006750	exon2	c.C769A	p.L257I	.	.	28	4	51	0	C|0.999;T|0.001	90
SNX13	23161	bcgsc.ca	37	7	17874473	17874473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNX13	NM_015132	exon14	c.A1375T	p.T459S	.	.	155	6	125	0	.	650
SNX16	64089	bcgsc.ca	37	8	82752131	82752131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNX16	NM_152836	exon2	c.G91T	p.G31C	.	.	88	4	105	0	.	228
SNX6	58533	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35072633	35072633	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SNX6	NM_152233	exon6	c.T473G	p.V158G	.	.	168	75	176	2	.	226
SOAT1	6646	bcgsc.ca	37	1	179304695	179304695	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SOAT1	NM_003101	exon4	c.A232G	p.T78A	.	.	165	6	100	1	.	515
SOCS7	30837	bcgsc.ca	37	17	36523899	36523899	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SOCS7	NM_014598	exon6	c.T1326C	p.G442G	.	.	82	4	90	0	.	227
SOGA1	140710	bcgsc.ca	37	20	35437044	35437044	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_080627	exon8	c.A2686T	p.N896Y	.	.	42	5	44	0	.	.
SOGA2	23255	bcgsc.ca	37	18	8812989	8812989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015210	exon12	c.A2617G	p.T873A	.	.	67	4	72	0	.	.
SOS1	6654	bcgsc.ca	37	2	39234284	39234284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SOS1	NM_005633	exon16	c.G2561T	p.R854L	.	.	97	5	85	0	.	851
SOS2	6655	bcgsc.ca	37	14	50587074	50587074	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SOS2	NM_006939	exon22	c.A3408T	p.L1136F	.	.	62	4	53	0	.	849
SOWAHA	134548	ucsc.edu;bcgsc.ca	37	5	132150924	132150924	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_175873	exon1	c.T1611C	p.P537P	.	.	50	5	54	0	.	.
SOX5	6660	bcgsc.ca	37	12	23687305	23687305	+	Missense_Mutation	SNP	C	C	A	rs183456814	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SOX5	NM_006940	exon15	c.G2140T	p.G714C	.	.	110	5	79	0	C|0.999;T|0.001	655
SPACA3	124912	bcgsc.ca	37	17	31322450	31322450	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPACA3	NM_173847	exon2	c.T58C	p.S20P	.	.	67	5	79	0	.	92
SPAG1	6674	bcgsc.ca	37	8	101253192	101253192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPAG1	NM_003114	exon19	c.C2723A	p.P908Q	.	.	144	7	93	1	.	92
SPAG17	200162	ucsc.edu;bcgsc.ca	37	1	118727771	118727771	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPAG17	NM_206996	exon1	c.A10G	p.K4E	.	.	47	4	46	0	.	158
SPATA12	353324	bcgsc.ca	37	3	57107922	57107922	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPATA12	NM_181727	exon2	c.T200C	p.L67P	.	.	45	5	54	0	.	90
SPATA17	128153	bcgsc.ca	37	1	217824450	217824450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPATA17	NM_138796	exon3	c.G170T	p.R57M	.	.	109	5	152	0	.	69
SPATA31C1	441452	bcgsc.ca	37	9	90536699	90536699	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145124	exon4	c.C1877A	p.A626E	.	.	173	6	133	1	.	.
SPECC1	92521	bcgsc.ca	37	17	20108600	20108600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPECC1	NM_001033553	exon4	c.A1238G	p.E413G	.	.	69	4	53	0	.	639
SPECC1L	23384	bcgsc.ca	37	22	24718181	24718181	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPECC1L	NM_001145468	exon4	c.T1233C	p.S411S	.	.	23	4	25	0	.	92
SPG11	80208	bcgsc.ca	37	15	44858415	44858415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPG11	NM_025137	exon37	c.G6843T	p.K2281N	.	.	73	5	64	0	.	95
SPG11	80208	bcgsc.ca	37	15	44951429	44951429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPG11	NM_025137	exon3	c.T515C	p.V172A	.	.	92	6	67	0	.	95
SPHKAP	80309	bcgsc.ca	37	2	228860247	228860247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPHKAP	NM_030623	exon8	c.C4612A	p.Q1538K	.	.	49	4	58	0	.	167
SPHKAP	80309	bcgsc.ca	37	2	228882192	228882192	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPHKAP	NM_030623	exon7	c.C3378A	p.T1126T	.	.	63	4	52	0	.	167
SPIRE1	56907	bcgsc.ca	37	18	12493097	12493097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPIRE1	NM_020148	exon8	c.C1163A	p.P388Q	.	.	133	5	77	0	.	90
SPOCK3	50859	bcgsc.ca	37	4	167663169	167663169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPOCK3	NM_016950	exon10	c.C982A	p.Q328K	.	.	97	5	75	0	.	136
SPOP	8405	bcgsc.ca	37	17	47688709	47688709	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPOP	NM_001007228	exon6	c.C591A	p.S197S	.	.	85	4	73	0	.	660
SPPL2C	162540	bcgsc.ca	37	17	43923611	43923611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_175882	exon1	c.G1339T	p.G447C	.	.	88	5	60	0	.	.
SPRY3	10251	bcgsc.ca	37	X	155004205	155004205	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPRY3	NM_005840	exon2	c.C672A	p.A224A	.	.	119	6	163	1	.	136
SPTA1	6708	broad.mit.edu;bcgsc.ca	37	1	158619678	158619678	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SPTA1	NM_003126	exon25	c.G3537T	p.L1179L	.	.	178	14	89	1	.	142
SQRDL	58472	bcgsc.ca	37	15	45981304	45981304	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SQRDL	NM_021199	exon9	c.A1184T	p.Y395F	.	.	58	4	68	0	.	91
SREBF1	6720	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17716721	17716721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SREBF1	NM_001005291	exon19	c.C3265T	p.R1089C	.	.	24	10	28	0	.	91
SREK1IP1	285672	bcgsc.ca	37	5	64050142	64050142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SREK1IP1	NM_173829	exon2	c.C61A	p.P21T	.	.	142	5	120	0	.	23
SRFBP1	153443	bcgsc.ca	37	5	121362767	121362767	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SRFBP1	NM_152546	exon8	c.A1236G	p.E412E	.	.	203	6	147	0	.	90
SSFA2	6744	bcgsc.ca	37	2	182781062	182781062	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SSFA2	NM_001130445	exon11	c.C2695A	p.R899R	.	.	91	5	87	0	.	153
ST3GAL3	6487	bcgsc.ca	37	1	44386548	44386548	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ST3GAL3	NM_174963	exon12	c.C1193A	p.P398H	.	.	62	5	47	0	.	93
ST6GALNAC2	10610	ucsc.edu;bcgsc.ca	37	17	74562309	74562309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ST6GALNAC2	NM_006456	exon9	c.C1002A	p.S334S	.	.	65	6	46	0	.	90
ST7L	54879	bcgsc.ca	37	1	113140682	113140682	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ST7L	NM_138729	exon5	c.C533T	p.P178L	.	.	77	5	73	0	.	90
STAG2	10735	broad.mit.edu	37	X	123182927	123182927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STAG2	NM_001042749	exon10	c.C892A	p.R298S	.	.	474	11	511	1	.	134
STAG3	10734	bcgsc.ca	37	7	99778207	99778207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STAG3	NM_012447	exon2	c.G28A	p.G10R	.	.	56	4	32	0	.	543
STARD3NL	83930	broad.mit.edu;bcgsc.ca	37	7	38253999	38253999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD3NL	NM_032016	exon3	c.G267A	p.M89I	.	.	100	6	71	0	.	91
STARD5	80765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81615246	81615246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STARD5	NM_181900	exon2	c.G143T	p.G48V	.	.	74	43	69	0	.	91
STAT4	6775	bcgsc.ca	37	2	191923462	191923462	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STAT4	NM_001243835	exon11	c.G1068T	p.Q356H	.	.	217	6	155	0	.	914
STAT6	6778	bcgsc.ca	37	12	57492643	57492643	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STAT6	NM_001178079	exon18	c.G1998T	p.M666I	.	.	128	5	152	0	.	849
STBD1	8987	bcgsc.ca	37	4	77231007	77231007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STBD1	NM_003943	exon2	c.A931G	p.I311V	.	.	93	6	104	0	.	69
STEAP1	26872	bcgsc.ca	37	7	89790323	89790323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STEAP1	NM_012449	exon3	c.C289A	p.P97T	.	.	188	7	162	1	.	522
STK36	27148	bcgsc.ca	37	2	219559024	219559024	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STK36	NM_015690	exon20	c.A2374T	p.T792S	.	.	143	8	148	0	.	1004
STK4	6789	bcgsc.ca	37	20	43623737	43623737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STK4	NM_006282	exon6	c.A532G	p.M178V	.	.	75	4	57	0	.	767
STOML2	30968	bcgsc.ca	37	9	35101794	35101794	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STOML2	NM_013442	exon5	c.G357T	p.V119V	.	.	90	5	77	0	.	90
STRBP	55342	bcgsc.ca	37	9	125909167	125909167	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STRBP	NM_018387	exon13	c.C1305A	p.S435S	.	.	151	5	68	0	.	154
STXBP5	134957	bcgsc.ca	37	6	147560399	147560399	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STXBP5	NM_139244	exon4	c.A424G	p.R142G	.	.	80	4	62	0	.	90
STXBP5	134957	bcgsc.ca	37	6	147694904	147694904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	STXBP5	NM_001127715	exon26	c.C3119A	p.P1040H	.	.	104	7	63	1	.	90
SUCNR1	56670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151598552	151598552	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUCNR1	NM_033050	exon3	c.G221T	p.C74F	.	.	162	59	142	0	.	711
SUGT1P1	441394	bcgsc.ca	37	9	33503842	33503842	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	109	4	51	0	.	.
SUN5	140732	bcgsc.ca	37	20	31585453	31585453	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUN5	NM_080675	exon6	c.A381G	p.K127K	.	.	47	4	40	0	.	91
SUPT20H	55578	bcgsc.ca	37	13	37599466	37599466	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_017569	exon17	c.A1323G	p.K441K	.	.	73	4	49	0	.	.
SUSD5	26032	ucsc.edu;bcgsc.ca	37	3	33195198	33195198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUSD5	NM_015551	exon5	c.A926G	p.E309G	.	.	42	5	56	0	.	24
SUZ12	23512	bcgsc.ca	37	17	30321008	30321008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SUZ12	NM_015355	exon12	c.G1418T	p.R473I	.	.	68	5	44	0	.	658
SWT1	54823	bcgsc.ca	37	1	185240512	185240512	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SWT1	NM_017673	exon17	c.C2499A	p.I833I	.	.	146	6	206	0	.	91
SYCP3	50511	broad.mit.edu	37	12	102122926	102122926	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYCP3	NM_001177949	exon8	c.A618G	p.K206K	.	.	449	9	370	0	.	90
SYNE1	23345	bcgsc.ca	37	6	152772182	152772182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNE1	NM_033071	exon26	c.G3207T	p.R1069S	.	.	97	6	91	0	.	607
SYNE1	23345	bcgsc.ca	37	6	152787165	152787165	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNE1	NM_033071	exon17	c.C1702A	p.Q568K	.	.	77	4	56	0	.	607
SYNE1	23345	ucsc.edu	37	6	152651651	152651651	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNE1	NM_182961	exon78	c.G14169A	p.V4723V	.	.	36	4	29	0	.	607
SYNE2	23224	bcgsc.ca	37	14	64518730	64518730	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNE2	NM_182914	exon48	c.A8099G	p.K2700R	.	.	98	6	85	0	.	164
SYNJ1	8867	bcgsc.ca	37	21	34067455	34067455	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNJ1	NM_203446	exon5	c.G734A	p.R245K	.	.	81	6	81	0	.	232
SYNJ2BP-COX16	0	bcgsc.ca	37	14	70793092	70793092	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001202547	exon6	c.C534A	p.L178L	.	.	59	4	52	0	.	.
SYNPO	11346	bcgsc.ca	37	5	150027915	150027915	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNPO	NM_001166209	exon3	c.G810A	p.L270L	.	.	90	5	102	0	.	153
SYNPO2	171024	bcgsc.ca	37	4	119979016	119979016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNPO2	NM_133477	exon5	c.G3713T	p.R1238M	.	.	97	6	100	0	.	92
SYNRG	11276	bcgsc.ca	37	17	35945445	35945445	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNRG	NM_001163544	exon5	c.T465C	p.S155S	.	.	156	5	111	1	.	92
SYNRG	11276	bcgsc.ca	37	17	35946543	35946543	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYNRG	NM_001163544	exon4	c.T355C	p.F119L	.	.	144	6	106	0	.	92
SYT1	6857	bcgsc.ca	37	12	79689937	79689937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYT1	NM_001135805	exon8	c.C563A	p.P188H	.	.	107	5	80	0	.	655
SYT9	143425	ucsc.edu	37	11	7334931	7334931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYT9	NM_175733	exon3	c.G803T	p.R268L	.	.	87	8	97	1	.	155
SYTL2	54843	bcgsc.ca	37	11	85411582	85411582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYTL2	NM_206927	exon10	c.C3343A	p.Q1115K	.	.	84	5	82	0	.	137
SYTL5	94122	ucsc.edu	37	X	37893261	37893261	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	SYTL5	NM_001163334	exon1	c.G119T	p.R40M	.	.	38	6	63	1	.	131
TAF1	6872	bcgsc.ca	37	X	70597630	70597630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF1	NM_004606	exon6	c.G952A	p.A318T	.	.	85	5	71	0	.	900
TAF1	6872	broad.mit.edu;bcgsc.ca	37	X	70597452	70597452	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF1	NM_004606	exon6	c.775-1G>T	.	.	.	228	12	224	0	.	900
TAF1L	138474	bcgsc.ca	37	9	32632265	32632265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF1L	NM_153809	exon1	c.G3313T	p.D1105Y	.	.	150	5	112	0	.	870
TAF5	6877	bcgsc.ca	37	10	105143050	105143050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF5	NM_006951	exon7	c.G1590T	p.E530D	.	.	139	7	201	0	.	92
TAF5L	27097	bcgsc.ca	37	1	229737977	229737977	+	Missense_Mutation	SNP	G	G	T	rs143900321	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAF5L	NM_001025247	exon4	c.C937A	p.R313S	.	.	85	4	131	0	G|1.000;A|0.000	91
TANC1	85461	bcgsc.ca	37	2	160006950	160006950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TANC1	NM_033394	exon7	c.G565T	p.D189Y	.	.	71	4	57	0	.	92
TAPT1	202018	bcgsc.ca	37	4	16215438	16215438	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAPT1	NM_153365	exon2	c.A283G	p.R95G	.	.	82	5	114	0	.	90
TAS2R19	259294	bcgsc.ca	37	12	11174760	11174760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAS2R19	NM_176888	exon1	c.G411T	p.L137F	.	.	137	5	110	0	.	91
TAX1BP1	8887	bcgsc.ca	37	7	27832742	27832742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TAX1BP1	NM_006024	exon10	c.C1321A	p.R441S	.	.	123	8	102	0	.	153
TBC1D10B	26000	ucsc.edu;bcgsc.ca	37	16	30380803	30380803	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_015527	exon1	c.C702A	p.T234T	.	.	22	5	32	0	.	.
TBC1D1	23216	bcgsc.ca	37	4	38117418	38117418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D1	NM_001253912	exon18	c.T2927C	p.L976P	.	.	58	4	90	1	.	91
TBC1D14	57533	bcgsc.ca	37	4	7016204	7016204	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D14	NM_001113361	exon12	c.A1677G	p.V559V	.	.	57	4	75	0	.	92
TBC1D15	64786	bcgsc.ca	37	12	72289805	72289805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D15	NM_022771	exon9	c.G985A	p.E329K	.	.	82	4	63	0	.	90
TBC1D22B	55633	bcgsc.ca	37	6	37281593	37281593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D22B	NM_017772	exon10	c.A1091G	p.D364G	.	.	87	4	69	0	.	90
TBC1D23	55773	bcgsc.ca	37	3	100021021	100021021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D23	NM_001199198	exon11	c.G1203T	p.M401I	.	.	121	5	115	0	.	92
TBC1D28	254272	bcgsc.ca	37	17	18541703	18541703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D28	NM_001039397	exon8	c.C310A	p.L104M	.	.	119	5	170	0	.	91
TBC1D29	26083	bcgsc.ca	37	17	28887702	28887702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBC1D29	NM_015594	exon3	c.T146C	p.L49P	.	.	63	4	56	0	.	22
TBCC	6903	bcgsc.ca	37	6	42713160	42713160	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TBCC	NM_003192	exon1	c.C652T	p.L218L	.	.	51	4	57	0	.	90
TCP11	6954	bcgsc.ca	37	6	35087082	35087082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TCP11	NM_001093728	exon9	c.G1241T	p.S414I	.	.	116	5	114	0	.	95
TCTE1	202500	bcgsc.ca	37	6	44250120	44250120	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TCTE1	NM_182539	exon4	c.G1023T	p.L341L	.	.	59	6	73	0	.	94
TCTN2	79867	bcgsc.ca	37	12	124158173	124158173	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TCTN2	NM_024809	exon4	c.A279G	p.E93E	.	.	83	4	126	1	.	91
TDGF1	6997	bcgsc.ca	37	3	46620587	46620587	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TDGF1	NM_003212	exon2	c.T38C	p.V13A	.	.	156	5	116	0	.	90
TDRD1	56165	bcgsc.ca	37	10	115973767	115973767	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TDRD1	NM_198795	exon16	c.A2106G	p.P702P	.	.	74	4	145	0	.	90
TDRD6	221400	bcgsc.ca	37	6	46659476	46659476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TDRD6	NM_001168359	exon1	c.C3611A	p.P1204H	.	.	141	5	96	0	.	138
TECRL	253017	bcgsc.ca	37	4	65147238	65147238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TECRL	NM_001010874	exon10	c.T872C	p.F291S	.	.	228	6	144	0	.	90
TENM1	10178	bcgsc.ca	37	X	123697599	123697599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001163278	exon13	c.G2287T	p.D763Y	.	.	358	11	338	0	.	.
TERF1	7013	bcgsc.ca	37	8	73958296	73958296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TERF1	NM_017489	exon10	c.G1244T	p.R415L	.	.	220	8	163	0	.	228
TERF1	7013	broad.mit.edu;bcgsc.ca	37	8	73942592	73942592	+	Silent	SNP	G	G	T	rs188011159	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TERF1	NM_017489	exon7	c.G909T	p.A303A	.	.	242	9	287	1	G|0.999;A|0.000	228
TEX11	56159	hgsc.bcm.edu;bcgsc.ca	37	X	70053381	70053383	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TEX11	NM_001003811	exon9	c.631_633del	p.211_211del	.	.	173	63	178	0	.	178
TEX14	56155	bcgsc.ca	37	17	56659057	56659057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TEX14	NM_001201457	exon20	c.C3224A	p.S1075Y	.	.	77	4	63	0	.	810
TEX15	56154	bcgsc.ca	37	8	30700283	30700283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TEX15	NM_031271	exon1	c.A6251G	p.D2084G	.	.	81	5	45	0	.	97
TEX33	339669	bcgsc.ca	37	22	37387314	37387314	+	Missense_Mutation	SNP	C	C	A	rs201180943	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001163857	exon6	c.G749T	p.R250L	.	.	84	5	117	0	C|0.999;T|0.001	.
TF	7018	bcgsc.ca	37	3	133485141	133485141	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TF	NM_001063	exon12	c.G1350T	p.V450V	.	.	133	6	150	0	.	92
TFCP2L1	29842	ucsc.edu;bcgsc.ca	37	2	121995248	121995248	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFCP2L1	NM_014553	exon10	c.T954C	p.L318L	.	.	30	4	39	0	.	93
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	141678612	141678612	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G955T	p.G319X	.	.	60	26	68	0	.	226
TFDP2	7029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	141678613	141678613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFDP2	NM_001178139	exon11	c.G954T	p.M318I	.	.	60	28	71	0	.	226
TFPI	7035	bcgsc.ca	37	2	188361743	188361743	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TFPI	NM_001032281	exon3	c.C184T	p.P62S	.	.	65	4	57	0	.	91
TGFB3	7043	bcgsc.ca	37	14	76427294	76427294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TGFB3	NM_003239	exon6	c.T1052C	p.L351P	.	.	24	3	41	0	.	524
TGFB3	7043	bcgsc.ca	37	14	76446949	76446949	+	Silent	SNP	G	G	T	rs201047560	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TGFB3	NM_003239	exon1	c.C288A	p.T96T	.	.	63	4	56	0	G|0.999;A|0.001	524
TGS1	96764	bcgsc.ca	37	8	56737191	56737191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TGS1	NM_024831	exon13	c.C2491A	p.L831I	.	.	158	7	164	0	.	227
THAP10	56906	bcgsc.ca	37	15	71175152	71175152	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THAP10	NM_020147	exon2	c.A525G	p.P175P	.	.	139	5	109	0	.	92
THRB	7068	bcgsc.ca	37	3	24174843	24174843	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THRB	NM_000461	exon8	c.G849T	p.V283V	.	.	73	4	63	0	.	227
THSD7A	221981	bcgsc.ca	37	7	11468657	11468657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7A	NM_015204	exon14	c.G3160T	p.G1054C	.	.	75	5	67	1	.	71
THSD7A	221981	bcgsc.ca	37	7	11509545	11509545	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7A	NM_015204	exon9	c.T2329C	p.Y777H	.	.	67	4	45	0	.	71
THSD7A	221981	broad.mit.edu;bcgsc.ca	37	7	11675947	11675947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7A	NM_015204	exon2	c.G832T	p.G278W	.	.	140	7	101	0	.	71
THSD7B	80731	bcgsc.ca	37	2	138030223	138030223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	THSD7B	.	.	.	.	.	.	94	4	102	0	.	75
TIMM21	29090	bcgsc.ca	37	18	71825255	71825255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_014177	exon4	c.G469T	p.G157C	.	.	78	4	94	0	.	.
TIMMDC1	51300	bcgsc.ca	37	3	119219707	119219707	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TIMMDC1	NM_016589	exon2	c.G360T	p.V120V	.	.	74	4	45	1	.	91
TIPRL	261726	bcgsc.ca	37	1	168148318	168148318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TIPRL	NM_152902	exon1	c.G3T	p.M1I	.	.	60	6	29	0	.	91
TJP2	9414	bcgsc.ca	37	9	71842965	71842965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TJP2	NM_001170416	exon9	c.G1481A	p.G494E	.	.	75	4	42	0	.	115
TK2	7084	bcgsc.ca	37	16	66545946	66545946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TK2	NM_004614	exon10	c.G723A	p.M241I	.	.	58	4	95	0	.	115
TKT	7086	ucsc.edu;bcgsc.ca	37	3	53259913	53259913	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TKT	NM_001258028	exon15	c.G1755T	p.V585V	.	.	36	4	42	0	.	92
TLL1	7092	bcgsc.ca	37	4	166914038	166914038	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TLL1	NM_001204760	exon3	c.361+2T>A	.	.	.	80	4	78	0	.	158
TLR3	7098	bcgsc.ca	37	4	186997950	186997950	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TLR3	NM_003265	exon2	c.C177A	p.T59T	.	.	82	8	70	0	.	524
TLR4	7099	bcgsc.ca	37	9	120474808	120474808	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TLR4	NM_138554	exon3	c.G402T	p.V134V	.	.	146	5	69	0	.	577
TLR6	10333	bcgsc.ca	37	4	38829123	38829123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TLR6	NM_006068	exon2	c.A1972G	p.S658G	.	.	52	4	74	0	.	524
TMC1	117531	bcgsc.ca	37	9	75387427	75387427	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMC1	NM_138691	exon13	c.G840T	p.V280V	.	.	430	12	247	1	.	91
TMED10	10972	bcgsc.ca	37	14	75601707	75601707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMED10	NM_006827	exon5	c.T541C	p.S181P	.	.	53	4	60	0	.	90
TMED4	222068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44621075	44621075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMED4	NM_182547	exon3	c.G360A	p.R120R	.	.	18	10	25	0	.	90
TMEFF2	23671	bcgsc.ca	37	2	192863864	192863864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEFF2	NM_016192	exon6	c.G607A	p.D203N	.	.	110	5	103	0	.	524
TMEFF2	23671	ucsc.edu	37	2	193056638	193056638	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEFF2	NM_016192	exon2	c.G250T	p.G84X	.	.	43	4	38	0	.	524
TMEM116	89894	bcgsc.ca	37	12	112374541	112374541	+	Silent	SNP	G	G	T	rs143338734	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM116	NM_001193531	exon8	c.C543A	p.I181I	.	.	130	5	117	0	G|1.000;A|0.000	69
TMEM120B	144404	bcgsc.ca	37	12	122186252	122186252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM120B	NM_001080825	exon3	c.G209T	p.R70L	.	.	76	5	88	0	.	68
TMEM140	55281	bcgsc.ca	37	7	134849615	134849615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM140	NM_018295	exon2	c.G422T	p.W141L	.	.	80	5	86	0	.	153
TMEM141	85014	bcgsc.ca	37	9	139686206	139686206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM141	NM_032928	exon2	c.A98G	p.K33R	.	.	82	5	86	0	.	90
TMEM144	55314	bcgsc.ca	37	4	159158793	159158793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM144	NM_018342	exon9	c.A680G	p.Y227C	.	.	70	4	59	0	.	90
TMEM182	130827	bcgsc.ca	37	2	103414377	103414377	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM182	NM_144632	exon4	c.C387A	p.I129I	.	.	105	6	104	1	.	90
TMEM184C	55751	bcgsc.ca	37	4	148552636	148552636	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM184C	NM_018241	exon7	c.G759T	p.L253L	.	.	342	8	231	1	.	90
TMEM201	199953	bcgsc.ca	37	1	9657064	9657064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM201	NM_001010866	exon3	c.C382A	p.Q128K	.	.	50	4	78	0	.	68
TMEM218	219854	hgsc.bcm.edu;ucsc.edu	37	11	124972140	124972140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM218	NM_001258243	exon4	c.G103A	p.G35R	.	.	11	11	25	0	.	68
TMEM252	169693	bcgsc.ca	37	9	71152346	71152346	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_153237	exon2	c.A342G	p.A114A	.	.	86	6	59	0	.	.
TMEM27	57393	bcgsc.ca	37	X	15677196	15677196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM27	NM_020665	exon3	c.T146C	p.L49P	.	.	55	4	65	0	.	131
TMEM40	55287	bcgsc.ca	37	3	12778083	12778083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM40	NM_018306	exon10	c.G613A	p.G205R	.	.	63	6	72	0	.	90
TMEM44	93109	bcgsc.ca	37	3	194331691	194331691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM44	NM_001166305	exon9	c.C1112T	p.T371I	.	.	69	4	73	0	.	90
TMEM48	55706	bcgsc.ca	37	1	54284748	54284748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM48	NM_018087	exon6	c.A599G	p.Y200C	.	.	131	5	101	0	.	92
TMEM98	26022	bcgsc.ca	37	17	31258549	31258549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMEM98	NM_001033504	exon2	c.G3T	p.M1I	.	.	160	6	204	0	.	90
TMPRSS12	283471	bcgsc.ca	37	12	51252623	51252623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_182559	exon3	c.C439T	p.P147S	.	.	76	4	66	0	.	.
TMTC3	160418	bcgsc.ca	37	12	88547259	88547259	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TMTC3	NM_181783	exon3	c.T381C	p.F127F	.	.	83	4	65	0	.	91
TNFRSF14	8764	bcgsc.ca	37	1	2493206	2493206	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNFRSF14	NM_003820	exon6	c.T646C	p.C216R	.	.	21	3	43	1	.	227
TNFRSF21	27242	ucsc.edu	37	6	47202439	47202439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNFRSF21	NM_014452	exon5	c.G1705A	p.A569T	.	.	28	4	18	0	.	227
TNFSF10	8743	bcgsc.ca	37	3	172232669	172232669	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNFSF10	NM_003810	exon2	c.C252A	p.L84L	.	.	53	5	50	0	.	662
TNKS2	80351	bcgsc.ca	37	10	93586861	93586861	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNKS2	NM_025235	exon8	c.C883A	p.L295I	.	.	87	4	121	0	.	541
TNMD	64102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	99854571	99854571	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNMD	NM_022144	exon7	c.C811A	p.R271R	.	.	61	18	81	0	.	130
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72189531	72189532	+	Splice_Site	INS	-	-	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNPO1	NM_002270	exon18	c.2143+1->T	.	.	.	74	35	81	0	.	228
TNPO3	23534	bcgsc.ca	37	7	128624262	128624262	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNPO3	NM_012470	exon13	c.T1742A	p.L581H	.	.	55	4	33	0	.	228
TNRC6B	23112	bcgsc.ca	37	22	40696560	40696560	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNRC6B	NM_001162501	exon13	c.C3810T	p.S1270S	.	.	55	4	43	0	.	22
TNRC6B	23112	ucsc.edu;bcgsc.ca	37	22	40660919	40660919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TNRC6B	NM_001162501	exon5	c.A685G	p.S229G	.	.	28	4	39	0	.	22
TOP1	7150	bcgsc.ca	37	20	39744953	39744953	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TOP1	NM_003286	exon17	c.G1743T	p.M581I	.	.	62	4	55	0	.	1148
TOPAZ1	375337	bcgsc.ca	37	3	44364677	44364677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001145030	exon18	c.C4565A	p.A1522E	.	.	150	7	110	0	.	.
TOR1AIP1	26092	bcgsc.ca	37	1	179853859	179853859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TOR1AIP1	NM_001267578	exon2	c.C508A	p.Q170K	.	.	96	4	60	0	.	153
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	51	39	83	0	C|1.000;|0.000	70225
TPM1	7168	bcgsc.ca	37	15	63356326	63356326	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPM1	NM_001018005	exon9	c.A836G	p.N279S	.	.	74	4	57	0	.	90
TPP2	7174	bcgsc.ca	37	13	103301313	103301313	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPP2	NM_003291	exon22	c.G2685T	p.E895D	.	.	74	4	70	0	.	92
TPRKB	51002	bcgsc.ca	37	2	73959306	73959306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPRKB	NM_016058	exon3	c.T248C	p.L83P	.	.	79	5	77	0	.	92
TPRX1	284355	bcgsc.ca	37	19	48306011	48306011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPRX1	NM_198479	exon2	c.A257G	p.K86R	.	.	62	4	79	1	.	90
TPST1	8460	bcgsc.ca	37	7	65706049	65706049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPST1	NM_003596	exon2	c.A637G	p.T213A	.	.	129	5	136	0	.	90
TPST1	8460	bcgsc.ca	37	7	65706085	65706085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPST1	NM_003596	exon2	c.C673A	p.Q225K	.	.	153	7	166	0	.	90
TPTE2	93492	bcgsc.ca	37	13	20039439	20039439	+	Missense_Mutation	SNP	C	C	T	rs146223410		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPTE2	NM_199254	exon10	c.G632A	p.R211Q	.	.	186	6	169	0	C|1.000;T|0.000	92
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TPTE2	NM_199254	exon12	c.T771C	p.H257H	.	.	60	5	48	1	.	92
TRAF3	7187	bcgsc.ca	37	14	103372094	103372094	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRAF3	NM_145725	exon12	c.G1680T	p.V560V	.	.	56	4	83	0	.	659
TRAM2	9697	ucsc.edu;bcgsc.ca	37	6	52373071	52373071	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRAM2	NM_012288	exon6	c.G516T	p.L172L	.	.	32	4	23	0	.	90
TRAPPC11	60684	bcgsc.ca	37	4	184601357	184601357	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_021942	exon10	c.C1050T	p.Y350Y	.	.	128	5	127	0	.	.
TRAPPC2	6399	bcgsc.ca	37	X	13737993	13737993	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRAPPC2	NM_001128835	exon3	c.C192A	p.S64S	.	.	72	4	124	0	.	130
TRIM15	89870	bcgsc.ca	37	6	30131702	30131702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM15	NM_033229	exon1	c.A241G	p.T81A	.	.	79	4	64	0	.	90
TRIM15	89870	ucsc.edu	37	6	30131467	30131467	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM15	NM_033229	exon1	c.C6A	p.P2P	.	.	40	4	47	0	.	90
TRIM22	10346	bcgsc.ca	37	11	5730605	5730605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM22	NM_006074	exon8	c.G1224T	p.W408C	.	.	127	7	104	0	.	90
TRIM22	10346	ucsc.edu;bcgsc.ca	37	11	5718574	5718574	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM22	NM_001199573	exon3	c.519+1G>A	.	.	.	50	5	39	0	.	90
TRIM66	9866	ucsc.edu	37	11	8667291	8667291	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIM66	NM_014818	exon7	c.G666T	p.E222D	.	.	47	4	52	0	.	68
TRIM77	390231	bcgsc.ca	37	11	89444627	89444627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001146162	exon2	c.A461G	p.N154S	.	.	205	7	358	5	.	.
TRIO	7204	bcgsc.ca	37	5	14420023	14420023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIO	NM_007118	exon34	c.G5096T	p.R1699L	.	.	45	4	53	1	.	562
TRIP4	9325	bcgsc.ca	37	15	64717750	64717750	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRIP4	NM_016213	exon11	c.C1495A	p.P499T	.	.	116	5	88	0	.	188
TRMT1	55621	bcgsc.ca	37	19	13227057	13227057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRMT1	NM_001136035	exon2	c.C157A	p.Q53K	.	.	60	4	93	0	.	92
TRMT1L	81627	bcgsc.ca	37	1	185113115	185113115	+	Silent	SNP	C	C	A	rs143950753	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRMT1L	NM_030934	exon6	c.G702T	p.T234T	.	.	173	6	147	1	C|0.999;T|0.001	92
TRMT6	51605	bcgsc.ca	37	20	5923124	5923124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRMT6	NM_015939	exon7	c.C976A	p.Q326K	.	.	189	6	191	1	.	69
TRO	7216	bcgsc.ca	37	X	54955469	54955469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRO	NM_001039705	exon12	c.A2312G	p.N771S	.	.	72	4	71	0	.	131
TRPC4	7223	bcgsc.ca	37	13	38357213	38357213	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPC4	NM_001135958	exon2	c.C258A	p.I86I	.	.	44	4	43	0	.	159
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101342954	101342954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPC6	NM_004621	exon8	c.C2119A	p.L707I	.	.	30	4	57	0	.	93
TRPC7	57113	bcgsc.ca	37	5	135549272	135549272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_020389	exon12	c.C2440A	p.Q814K	.	.	93	4	81	0	.	.
TRPM2	7226	ucsc.edu;bcgsc.ca	37	21	45837840	45837840	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPM2	NM_003307	exon21	c.G3177A	p.T1059T	.	.	19	4	28	0	.	92
TRPM8	79054	bcgsc.ca	37	2	234855743	234855743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRPM8	NM_024080	exon8	c.G886T	p.G296C	.	.	144	5	126	0	.	94
TRRAP	8295	bcgsc.ca	37	7	98547711	98547711	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRRAP	NM_001244580	exon37	c.G5139T	p.L1713F	.	.	81	4	50	0	.	923
TRRAP	8295	bcgsc.ca	37	7	98557019	98557019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TRRAP	NM_001244580	exon44	c.G6374T	p.R2125L	.	.	80	5	61	0	.	923
TSEN2	80746	bcgsc.ca	37	3	12538039	12538039	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSEN2	NM_001145394	exon4	c.C294T	p.I98I	.	.	121	5	100	0	.	90
TSNARE1	203062	bcgsc.ca	37	8	143310888	143310888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSNARE1	NM_145003	exon13	c.T1499C	p.L500P	.	.	70	4	64	0	.	90
TSPAN12	23554	ucsc.edu	37	7	120455805	120455805	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSPAN12	NM_012338	exon5	c.G338A	p.W113X	.	.	52	4	45	0	.	514
TSPAN18	90139	bcgsc.ca	37	11	44940799	44940799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSPAN18	NM_130783	exon6	c.A368G	p.K123R	.	.	55	4	80	0	.	68
TSPAN2	10100	bcgsc.ca	37	1	115603142	115603142	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSPAN2	NM_005725	exon4	c.G288T	p.L96L	.	.	251	7	239	0	.	226
TSPYL5	85453	bcgsc.ca	37	8	98288980	98288980	+	Missense_Mutation	SNP	T	T	C	rs17854366		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TSPYL5	NM_033512	exon1	c.A1093G	p.I365V	.	.	131	6	80	0	T|1.000;|0.000	136
TTC23	64927	bcgsc.ca	37	15	99758814	99758814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTC23	NM_001040657	exon6	c.G560A	p.R187Q	.	.	173	7	161	0	.	90
TTC37	9652	bcgsc.ca	37	5	94839566	94839566	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTC37	NM_014639	exon31	c.T3169C	p.F1057L	.	.	133	6	105	0	.	94
TTC39A	22996	bcgsc.ca	37	1	51756237	51756237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTC39A	NM_001144832	exon15	c.G1339T	p.G447W	.	.	53	4	69	0	.	23
TTF1	7270	bcgsc.ca	37	9	135275461	135275461	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTF1	NM_007344	exon3	c.C1552A	p.R518R	.	.	188	7	132	0	.	94
TTI1	9675	bcgsc.ca	37	20	36641565	36641565	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTI1	NM_014657	exon3	c.C654T	p.T218T	.	.	58	4	70	0	.	94
TTLL5	23093	bcgsc.ca	37	14	76147965	76147965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTLL5	NM_015072	exon4	c.C259T	p.H87Y	.	.	50	4	29	0	.	92
TTLL5	23093	bcgsc.ca	37	14	76211870	76211870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTLL5	NM_015072	exon17	c.G1433T	p.R478L	.	.	285	8	310	0	.	92
TTN	7273	bcgsc.ca	37	2	179407658	179407658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon348	c.T96923C	p.L32308P	.	.	78	5	57	0	.	636
TTN	7273	bcgsc.ca	37	2	179433046	179433046	+	Missense_Mutation	SNP	C	C	A	rs186681106	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon326	c.G77813T	p.W25938L	.	.	134	7	94	1	C|0.998;G|0.002	636
TTN	7273	bcgsc.ca	37	2	179434240	179434240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon326	c.C76619A	p.P25540Q	.	.	198	6	193	0	.	636
TTN	7273	bcgsc.ca	37	2	179451843	179451843	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001256850	exon258	c.59170+2T>A	.	.	.	52	4	56	0	.	636
TTN	7273	bcgsc.ca	37	2	179458189	179458189	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon299	c.A58746G	p.A19582A	.	.	143	5	143	0	.	636
TTN	7273	bcgsc.ca	37	2	179467118	179467118	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon283	c.T55011A	p.P18337P	.	.	135	5	159	0	.	636
TTN	7273	bcgsc.ca	37	2	179576943	179576943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon96	c.C27614A	p.P9205Q	.	.	87	6	80	0	.	636
TTN	7273	bcgsc.ca	37	2	179587176	179587176	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_001267550	exon77	c.A22338G	p.A7446A	.	.	58	4	50	0	.	636
TTN	7273	bcgsc.ca	37	2	179605793	179605793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	TTN,NS,carcinoma,+1	TTN	NM_001267550	exon48	c.C12167A	p.P4056H	.	.	55	4	52	0	.	636
TTN	7273	bcgsc.ca	37	2	179614459	179614459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TTN	NM_133379	exon46	c.C12668A	p.S4223Y	.	.	93	4	81	0	.	636
TUB	7275	bcgsc.ca	37	11	8122447	8122447	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TUB	NM_003320	exon12	c.T1455C	p.P485P	.	.	70	4	82	0	.	91
TUBE1	51175	bcgsc.ca	37	6	112392723	112392723	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TUBE1	NM_016262	exon12	c.C1320T	p.F440F	.	.	130	5	92	0	.	91
TUBE1	51175	bcgsc.ca	37	6	112400917	112400917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TUBE1	NM_016262	exon6	c.C367A	p.Q123K	.	.	172	6	97	0	.	91
TUBG1	7283	bcgsc.ca	37	17	40762164	40762164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TUBG1	NM_001070	exon2	c.G88T	p.G30C	.	.	143	9	160	0	.	91
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	3048495	3048495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP3	NM_003324	exon11	c.A1214T	p.Q405L	.	.	124	51	150	0	.	226
TULP4	56995	bcgsc.ca	37	6	158735193	158735193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP4	NM_020245	exon1	c.G145A	p.G49S	.	.	48	4	42	0	.	91
TULP4	56995	bcgsc.ca;mdanderson.org	37	6	158923495	158923495	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TULP4	NM_020245	exon13	c.G2800T	p.V934F	.	.	36	17	43	2	.	91
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	173	23	357	10	.	.
TWSG1	57045	bcgsc.ca	37	18	9396375	9396375	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	TWSG1	NM_020648	exon4	c.C321A	p.L107L	.	.	74	4	86	0	.	92
U2SURP	23350	bcgsc.ca	37	3	142752194	142752194	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	U2SURP	NM_001080415	exon18	c.1853+2T>A	.	.	.	81	4	61	0	.	71
U2SURP	23350	bcgsc.ca	37	3	142754828	142754828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	U2SURP	NM_001080415	exon20	c.G1946T	p.R649L	.	.	129	5	106	0	.	71
UACA	55075	bcgsc.ca	37	15	70975135	70975135	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UACA	NM_018003	exon10	c.785-1G>T	.	.	.	301	8	229	0	.	94
UACA	55075	bcgsc.ca	37	15	70980098	70980098	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UACA	NM_018003	exon6	c.C486A	p.A162A	.	.	109	7	88	0	.	94
UBA3	9039	bcgsc.ca	37	3	69111284	69111284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBA3	NM_003968	exon10	c.A740G	p.E247G	.	.	141	5	104	0	.	227
UBE2D2	7322	bcgsc.ca	37	5	138994189	138994189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBE2D2	NM_003339	exon3	c.C107T	p.T36I	.	.	237	6	191	1	.	226
UBE4A	9354	bcgsc.ca	37	11	118260553	118260553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBE4A	NM_004788	exon17	c.T2722C	p.F908L	.	.	73	4	115	0	.	229
UBN1	29855	ucsc.edu;bcgsc.ca	37	16	4925031	4925031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBN1	NM_001079514	exon15	c.A2620G	p.K874E	.	.	20	4	17	0	.	92
UBQLN1	29979	bcgsc.ca	37	9	86322475	86322475	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBQLN1	NM_053067	exon1	c.C120A	p.T40T	.	.	100	5	94	0	.	90
UBR1	197131	bcgsc.ca	37	15	43313475	43313475	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBR1	NM_174916	exon27	c.C2938A	p.Q980K	.	.	67	4	42	1	.	91
UBR1	197131	bcgsc.ca	37	15	43346944	43346944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBR1	NM_174916	exon12	c.C1435A	p.L479I	.	.	206	6	212	0	.	91
UBR2	23304	bcgsc.ca	37	6	42641923	42641923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBR2	NM_015255	exon38	c.C4243A	p.H1415N	.	.	242	6	190	0	.	94
UBR4	23352	bcgsc.ca	37	1	19510306	19510306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBR4	NM_020765	exon17	c.A2183G	p.Q728R	.	.	105	4	102	0	.	612
UBTF	7343	ucsc.edu	37	17	42290630	42290630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBTF	NM_014233	exon6	c.C495A	p.F165L	.	.	47	4	51	0	.	90
UBXN4	23190	bcgsc.ca	37	2	136537791	136537791	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UBXN4	NM_014607	exon12	c.C1224T	p.S408S	.	.	148	5	166	2	.	92
UGGT1	56886	bcgsc.ca	37	2	128892529	128892529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UGGT1	NM_020120	exon15	c.C1577A	p.P526Q	.	.	43	4	34	0	.	91
UGGT2	55757	bcgsc.ca	37	13	96536920	96536920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UGGT2	NM_020121	exon27	c.T3053C	p.V1018A	.	.	119	5	136	0	.	92
UGT2B4	7363	bcgsc.ca	37	4	70361007	70361007	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UGT2B4	NM_021139	exon1	c.T573C	p.P191P	.	.	125	5	126	1	.	92
UGT2B7	7364	bcgsc.ca	37	4	69962323	69962323	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UGT2B7	NM_001074	exon1	c.T85C	p.W29R	.	.	178	6	148	0	.	92
UGT3A2	167127	bcgsc.ca	37	5	36049216	36049216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UGT3A2	NM_174914	exon4	c.G618A	p.M206I	.	.	77	4	78	0	.	158
UHRF1BP1L	23074	bcgsc.ca	37	12	100441790	100441790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UHRF1BP1L	NM_015054	exon18	c.G3903T	p.L1301F	.	.	248	8	189	2	.	24
UHRF1BP1L	23074	bcgsc.ca	37	12	100452443	100452443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UHRF1BP1L	NM_015054	exon14	c.T2612C	p.L871P	.	.	80	4	57	0	.	24
UMOD	7369	ucsc.edu	37	16	20357482	20357482	+	Missense_Mutation	SNP	G	G	T	rs181197211	alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UMOD	NM_003361	exon5	c.C1148A	p.P383Q	.	.	33	4	45	0	G|0.999;A|0.000	92
UNC13C	440279	bcgsc.ca	37	15	54624265	54624265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UNC13C	NM_001080534	exon13	c.G4450T	p.D1484Y	.	.	78	5	78	0	.	51
URI1	8725	bcgsc.ca	37	19	30477315	30477315	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	C19orf2,NS,carcinoma,0	.	NM_003796	exon4	c.C358A	p.R120R	.	.	94	5	74	0	.	.
USH2A	7399	bcgsc.ca	37	1	215799167	215799167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USH2A	NM_206933	exon72	c.T15565C	p.S5189P	.	.	158	8	275	1	.	115
USH2A	7399	bcgsc.ca	37	1	215853550	215853550	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USH2A	NM_206933	exon62	c.A12235G	p.N4079D	.	.	56	4	73	0	.	115
USH2A	7399	ucsc.edu;bcgsc.ca	37	1	216462747	216462747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USH2A	NM_007123	exon11	c.A1846G	p.N616D	.	.	38	4	57	0	.	115
USP16	10600	bcgsc.ca	37	21	30411447	30411447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP16	NM_006447	exon8	c.C833A	p.P278Q	.	.	64	5	51	0	.	659
USP19	10869	bcgsc.ca	37	3	49148001	49148001	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP19	NM_001199161	exon25	c.A3735G	p.K1245K	.	.	68	4	70	0	.	663
USP25	29761	bcgsc.ca	37	21	17199347	17199347	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP25	NM_013396	exon14	c.T1518C	p.P506P	.	.	69	4	53	0	.	663
USP32	84669	bcgsc.ca	37	17	58365896	58365896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP32	NM_032582	exon5	c.G559A	p.G187R	.	.	134	7	79	0	.	704
USP34	9736	bcgsc.ca	37	2	61441585	61441585	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP34	NM_014709	exon68	c.T8292C	p.I2764I	.	.	101	6	96	0	.	579
USP34	9736	bcgsc.ca	37	2	61538978	61538978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP34	NM_014709	exon26	c.A3610G	p.S1204G	.	.	47	4	41	0	.	579
USP34	9736	ucsc.edu	37	2	61575039	61575039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP34	NM_014709	exon15	c.C2251A	p.H751N	.	.	46	4	21	0	.	579
USP44	84101	bcgsc.ca	37	12	95922715	95922715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP44	NM_032147	exon3	c.G1492A	p.E498K	.	.	46	4	35	0	.	658
USP45	85015	bcgsc.ca	37	6	99958092	99958092	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP45	NM_001080481	exon2	c.G5T	p.R2L	.	.	273	8	201	0	.	637
USP47	55031	bcgsc.ca	37	11	11971991	11971991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP47	NM_017944	exon23	c.T3341C	p.I1114T	.	.	40	4	44	0	.	660
USP48	84196	bcgsc.ca	37	1	22041882	22041882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP48	NM_032236	exon15	c.G1963T	p.G655C	.	.	498	12	370	2	.	659
USP53	54532	bcgsc.ca	37	4	120213982	120213982	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP53	NM_019050	exon18	c.C2838A	p.V946V	.	.	74	4	73	0	.	660
USP7	7874	bcgsc.ca	37	16	8990928	8990928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP7	NM_003470	exon26	c.G2747T	p.G916V	.	.	102	6	108	0	.	661
USP9X	8239	bcgsc.ca	37	X	41055984	41055984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USP9X	NM_001039591	exon28	c.G4226A	p.R1409K	.	.	73	5	113	0	.	563
USPL1	10208	bcgsc.ca	37	13	31231841	31231841	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	USPL1	NM_005800	exon9	c.G1627A	p.E543K	.	.	34	4	31	0	.	524
UTRN	7402	bcgsc.ca	37	6	144863952	144863952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UTRN	NM_007124	exon45	c.A6541G	p.T2181A	.	.	134	6	123	1	.	95
UVRAG	7405	bcgsc.ca	37	11	75563013	75563013	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	UVRAG	NM_003369	exon2	c.T203C	p.L68P	.	.	78	6	78	0	.	229
VANGL1	81839	bcgsc.ca	37	1	116202313	116202313	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VANGL1	NM_001172411	exon3	c.G123A	p.G41G	.	.	52	4	43	0	.	226
VAT1	10493	bcgsc.ca	37	17	41168160	41168160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VAT1	NM_006373	exon6	c.T1100C	p.V367A	.	.	53	4	73	0	.	90
VCP	7415	bcgsc.ca	37	9	35059531	35059531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VCP	NM_007126	exon14	c.G1963T	p.A655S	.	.	80	4	75	0	.	228
VDAC1	7416	bcgsc.ca	37	5	133326600	133326600	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VDAC1	NM_003374	exon6	c.271-2A>G	.	.	.	82	5	63	0	.	90
VDAC3	7419	bcgsc.ca	37	8	42257212	42257212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VDAC3	NM_001135694	exon6	c.C317A	p.P106Q	.	.	227	7	136	0	.	91
VIM	7431	bcgsc.ca	37	10	17275585	17275585	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VIM	NM_003380	exon4	c.625-1G>T	.	.	.	156	6	142	0	.	291
VIP	7432	bcgsc.ca	37	6	153078256	153078256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VIP	NM_003381	exon6	c.C493T	p.P165S	.	.	79	4	57	0	.	90
VIPR2	7434	bcgsc.ca	37	7	158851214	158851214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VIPR2	NM_003382	exon5	c.T413C	p.L138P	.	.	41	4	56	0	.	91
VNN1	8876	bcgsc.ca	37	6	133005599	133005599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VNN1	NM_004666	exon6	c.G1234T	p.G412C	.	.	55	4	49	0	.	93
VPS13A	23230	bcgsc.ca	37	9	79936568	79936568	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS13A	NM_001018038	exon44	c.A5736G	p.G1912G	.	.	133	5	75	0	.	161
VPS13B	157680	bcgsc.ca	37	8	100479707	100479707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS13B	NM_152564	exon24	c.G3511T	p.V1171L	.	.	142	5	79	0	.	301
VPS13C	54832	bcgsc.ca	37	15	62161750	62161750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS13C	NM_020821	exon80	c.C10697T	p.P3566L	.	.	55	4	41	0	.	92
VPS13C	54832	bcgsc.ca	37	15	62223386	62223386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS13C	NM_020821	exon50	c.G5941T	p.G1981W	.	.	62	4	51	0	.	92
VPS13C	54832	bcgsc.ca	37	15	62315640	62315640	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS13C	NM_020821	exon8	c.C594A	p.I198I	.	.	420	10	287	0	.	92
VPS16	64601	bcgsc.ca	37	20	2840434	2840434	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS16	NM_022575	exon2	c.A123G	p.A41A	.	.	55	4	66	0	.	94
VPS26A	9559	bcgsc.ca	37	10	70917936	70917936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS26A	NM_001035260	exon5	c.C520A	p.L174I	.	.	24	3	46	0	.	90
VPS36	51028	bcgsc.ca	37	13	52990168	52990168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS36	NM_016075	exon13	c.C1051A	p.L351I	.	.	127	5	128	0	.	91
VPS4B	9525	bcgsc.ca	37	18	61064369	61064369	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VPS4B	NM_004869	exon9	c.G990A	p.G330G	.	.	74	4	57	0	.	91
VPS51	738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64878964	64878964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_013265	exon10	c.C2254G	p.L752V	.	.	73	28	83	0	.	.
VPS9D1	9605	bcgsc.ca	37	16	89782938	89782938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_004913	exon4	c.G363T	p.K121N	.	.	31	4	84	0	.	.
VWA3A	146177	ucsc.edu;bcgsc.ca	37	16	22132937	22132937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA3A	NM_173615	exon14	c.A1355G	p.E452G	.	.	47	4	51	0	.	1
VWA5A	4013	ucsc.edu;bcgsc.ca	37	11	124013226	124013226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWA5A	NM_014622	exon16	c.G2101T	p.A701S	.	.	42	4	68	0	.	92
VWCE	220001	bcgsc.ca	37	11	61050266	61050266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWCE	NM_152718	exon6	c.G653A	p.C218Y	.	.	46	4	57	0	.	91
VWF	7450	broad.mit.edu;bcgsc.ca	37	12	6161738	6161738	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	VWF	NM_000552	exon16	c.A2157G	p.E719E	.	.	66	5	115	0	.	163
WAPAL	23063	bcgsc.ca	37	10	88206036	88206036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WAPAL	NM_015045	exon16	c.G3285T	p.K1095N	.	.	69	4	123	0	.	91
WAPAL	23063	bcgsc.ca	37	10	88260209	88260209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WAPAL	NM_015045	exon3	c.A791G	p.K264R	.	.	70	4	127	1	.	91
WASF1	8936	bcgsc.ca	37	6	110428358	110428358	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WASF1	NM_001024935	exon6	c.T462C	p.P154P	.	.	162	5	124	0	.	90
WDR19	57728	bcgsc.ca	37	4	39255585	39255585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR19	NM_025132	exon26	c.G2936A	p.C979Y	.	.	69	4	92	0	.	67
WDR36	134430	bcgsc.ca	37	5	110456220	110456220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR36	NM_139281	exon18	c.T2099C	p.V700A	.	.	81	5	85	0	.	92
WDR37	22884	bcgsc.ca	37	10	1118196	1118196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR37	NM_014023	exon2	c.A101G	p.E34G	.	.	75	5	83	0	.	90
WDR48	57599	bcgsc.ca	37	3	39108366	39108366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR48	NM_020839	exon5	c.A481G	p.T161A	.	.	61	4	44	0	.	91
WDR61	80349	bcgsc.ca	37	15	78580689	78580689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR61	NM_025234	exon8	c.C598A	p.P200T	.	.	58	4	29	0	.	92
WDR78	79819	bcgsc.ca	37	1	67370982	67370982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR78	NM_207014	exon2	c.G247T	p.G83C	.	.	246	7	217	0	.	92
WDR78	79819	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	67292730	67292730	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR78	NM_024763	exon16	c.2113-1G>A	.	.	.	183	83	159	1	.	92
WDR90	197335	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	712780	712780	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR90	NM_145294	exon34	c.C4247T	p.T1416M	.	.	31	11	49	0	.	92
WDR91	29062	ucsc.edu	37	7	134878386	134878386	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WDR91	NM_014149	exon10	c.T1434C	p.Y478Y	.	.	44	4	58	0	.	137
WEE2	494551	bcgsc.ca	37	7	141429392	141429392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WEE2	NM_001105558	exon11	c.G1597T	p.G533W	.	.	61	5	73	0	.	305
WFDC3	140686	bcgsc.ca	37	20	44404237	44404237	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WFDC3	NM_080614	exon6	c.G498T	p.R166R	.	.	58	4	77	0	.	90
WFDC9	259240	bcgsc.ca	37	20	44237324	44237324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WFDC9	NM_147198	exon4	c.G217A	p.G73R	.	.	61	4	86	0	.	90
WHSC1L1	54904	bcgsc.ca	37	8	38162904	38162904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WHSC1L1	NM_023034	exon13	c.G2302A	p.G768S	.	.	116	5	81	0	.	658
WHSC1L1	54904	bcgsc.ca	37	8	38173457	38173457	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WHSC1L1	NM_023034	exon10	c.C1959A	p.S653S	.	.	70	4	51	0	.	658
WRN	7486	bcgsc.ca	37	8	31000161	31000161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WRN	NM_000553	exon27	c.G3253T	p.G1085C	.	.	283	9	191	0	.	1036
WT1	7490	bcgsc.ca	37	11	32456446	32456446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WT1	NM_024424	exon1	c.C446T	p.A149V	.	.	22	4	25	0	.	6891
WWP1	11059	bcgsc.ca	37	8	87410616	87410616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	WWP1	NM_007013	exon6	c.A380G	p.N127S	.	.	149	5	104	0	.	659
XIRP2	129446	bcgsc.ca	37	2	168100534	168100534	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XIRP2	NM_152381	exon9	c.C2632A	p.L878I	.	.	124	5	114	0	.	104
XK	7504	bcgsc.ca	37	X	37553538	37553538	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XK	NM_021083	exon2	c.246-1G>T	.	.	.	121	8	251	0	.	130
XPNPEP2	7512	ucsc.edu;bcgsc.ca	37	X	128896688	128896688	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XPNPEP2	NM_003399	exon19	c.A1682T	p.D561V	.	.	33	4	44	0	.	130
XPO4	64328	bcgsc.ca	37	13	21364608	21364608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XPO4	NM_022459	exon19	c.T2909C	p.L970P	.	.	77	4	47	0	.	272
XRCC2	7516	bcgsc.ca	37	7	152345917	152345917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XRCC2	NM_005431	exon3	c.A653G	p.D218G	.	.	56	4	63	0	.	1084
XRRA1	143570	bcgsc.ca	37	11	74556213	74556213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	XRRA1	NM_182969	exon16	c.G1808T	p.R603L	.	.	145	6	142	0	.	68
YEATS2	55689	bcgsc.ca	37	3	183471950	183471950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YEATS2	NM_018023	exon11	c.C1187A	p.P396Q	.	.	119	5	97	1	.	138
YEATS2	55689	ucsc.edu	37	3	183493905	183493905	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YEATS2	NM_018023	exon18	c.T2571C	p.T857T	.	.	40	4	50	0	.	138
YTHDC2	64848	bcgsc.ca	37	5	112860715	112860715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YTHDC2	NM_022828	exon3	c.G316T	p.D106Y	.	.	176	7	100	1	.	92
YTHDC2	64848	bcgsc.ca	37	5	112899795	112899795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YTHDC2	NM_022828	exon20	c.C2682A	p.F894L	.	.	85	4	61	0	.	92
YY1AP1	55249	bcgsc.ca	37	1	155630238	155630238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YY1AP1	NM_001198903	exon10	c.C1877A	p.P626H	.	.	66	4	56	0	.	93
YY2	404281	bcgsc.ca	37	X	21875700	21875700	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	YY2	NM_206923	exon1	c.G1098A	p.V366V	.	.	67	4	107	0	.	193
ZAN	7455	bcgsc.ca	37	7	100336158	100336158	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZAN	.	.	.	.	.	.	98	6	150	0	.	142
ZBTB40	9923	ucsc.edu;bcgsc.ca	37	1	22839460	22839460	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZBTB40	NM_001083621	exon13	c.T2505C	p.P835P	.	.	40	5	24	0	.	91
ZC3H12C	85463	bcgsc.ca	37	11	110007827	110007827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZC3H12C	NM_033390	exon2	c.A461G	p.K154R	.	.	22	3	40	0	.	68
ZC3H14	79882	bcgsc.ca	37	14	89068285	89068285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZC3H14	NM_001160104	exon11	c.T1372C	p.S458P	.	.	85	4	61	0	.	93
ZC3H7A	29066	bcgsc.ca	37	16	11856551	11856551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZC3H7A	NM_014153	exon17	c.G2055T	p.L685F	.	.	69	5	45	0	.	94
ZC3H7A	29066	bcgsc.ca	37	16	11861366	11861366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZC3H7A	NM_014153	exon13	c.G1429T	p.G477C	.	.	262	7	181	0	.	94
ZCCHC5	203430	bcgsc.ca	37	X	77913615	77913615	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZCCHC5	NM_152694	exon2	c.A303G	p.A101A	.	.	108	5	106	0	.	131
ZCCHC6	79670	bcgsc.ca	37	9	88937797	88937797	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZCCHC6	NM_024617	exon13	c.C2868A	p.T956T	.	.	161	5	111	0	.	92
ZDBF2	57683	bcgsc.ca	37	2	207169561	207169561	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDBF2	NM_020923	exon5	c.C309A	p.T103T	.	.	91	5	63	1	.	3
ZDHHC13	54503	bcgsc.ca	37	11	19164589	19164589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDHHC13	NM_019028	exon2	c.A92G	p.E31G	.	.	57	4	45	0	.	90
ZDHHC14	79683	ucsc.edu	37	6	158014047	158014047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDHHC14	NM_024630	exon3	c.G434A	p.G145E	.	.	51	4	59	0	.	227
ZDHHC16	84287	broad.mit.edu;bcgsc.ca	37	10	99213323	99213323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZDHHC16	NM_198043	exon6	c.G593T	p.R198L	.	.	97	8	194	0	.	91
ZEB1	6935	bcgsc.ca	37	10	31810560	31810560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZEB1	NM_001174096	exon7	c.A2300G	p.E767G	.	.	60	4	47	0	.	518
ZFAND6	54469	bcgsc.ca	37	15	80429883	80429883	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFAND6	NM_001242913	exon8	c.T540C	p.N180N	.	.	152	7	126	0	.	90
ZFP36	7538	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39899108	39899108	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFP36	NM_003407	exon2	c.C768A	p.C256X	.	.	67	24	71	1	.	227
ZFP62	643836	bcgsc.ca	37	5	180278185	180278185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001172638	exon2	c.C310A	p.Q104K	.	.	227	7	301	1	.	.
ZFR2	23217	bcgsc.ca	37	19	3808888	3808888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFR2	NM_015174	exon17	c.A2527G	p.T843A	.	.	54	4	59	0	.	70
ZFYVE1	53349	bcgsc.ca	37	14	73464858	73464858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFYVE1	NM_021260	exon3	c.T649C	p.C217R	.	.	50	4	49	0	.	91
ZFYVE1	53349	ucsc.edu;bcgsc.ca	37	14	73460001	73460001	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZFYVE1	NM_021260	exon4	c.T1053C	p.P351P	.	.	41	4	55	0	.	91
ZIM2	23619	bcgsc.ca	37	19	57286898	57286898	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZIM2	NM_015363	exon12	c.743-1G>T	.	.	.	68	6	47	0	.	28
ZMYM5	9205	bcgsc.ca	37	13	20411926	20411926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZMYM5	NM_001039650	exon6	c.C908A	p.P303Q	.	.	136	7	106	0	.	90
ZMYM6	9204	bcgsc.ca	37	1	35478152	35478152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZMYM6	NM_007167	exon7	c.G826T	p.G276W	.	.	123	5	92	0	.	93
ZNF107	51427	bcgsc.ca	37	7	64168347	64168347	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF107	NM_016220	exon7	c.A1665G	p.E555E	.	.	86	4	49	0	.	69
ZNF137P	7696	bcgsc.ca	37	19	53099242	53099242	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	.	.	.	.	.	.	50	4	78	0	.	.
ZNF142	7701	ucsc.edu	37	2	219508590	219508590	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF142	NM_001105537	exon8	c.C2649A	p.T883T	.	.	23	4	28	0	.	137
ZNF143	7702	bcgsc.ca	37	11	9496127	9496127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF143	NM_003442	exon5	c.A320G	p.Q107R	.	.	83	5	69	0	.	90
ZNF17	7565	bcgsc.ca	37	19	57931584	57931584	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF17	NM_006959	exon3	c.G724A	p.G242R	.	.	69	5	63	0	.	90
ZNF224	7767	bcgsc.ca	37	19	44612213	44612213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF224	NM_013398	exon6	c.G1900A	p.V634I	.	.	57	4	68	0	.	92
ZNF251	90987	bcgsc.ca	37	8	145948592	145948592	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF251	NM_138367	exon5	c.C453A	p.A151A	.	.	126	7	75	0	.	68
ZNF280C	55609	broad.mit.edu;bcgsc.ca	37	X	129380913	129380913	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF280C	NM_017666	exon3	c.A98G	p.K33R	.	.	378	11	383	0	.	132
ZNF281	23528	bcgsc.ca	37	1	200376329	200376329	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF281	NM_012482	exon2	c.T2505C	p.F835F	.	.	67	4	108	0	.	154
ZNF286A	57335	bcgsc.ca	37	17	15619854	15619854	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF286A	NM_020652	exon6	c.C816A	p.T272T	.	.	90	4	139	0	.	90
ZNF28	7576	bcgsc.ca	37	19	53304773	53304773	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF28	NM_006969	exon4	c.C325A	p.H109N	.	.	163	6	133	0	.	91
ZNF30	90075	bcgsc.ca	37	19	35434777	35434777	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF30	NM_001099438	exon5	c.C910A	p.L304I	.	.	30	4	32	0	.	24
ZNF319	57567	bcgsc.ca	37	16	58031057	58031057	+	Missense_Mutation	SNP	G	G	T	rs201171999		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF319	NM_020807	exon2	c.C1113A	p.F371L	.	.	54	4	99	0	.	90
ZNF320	162967	bcgsc.ca	37	19	53385171	53385171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF320	NM_207333	exon4	c.C208A	p.H70N	.	.	100	6	95	0	.	91
ZNF326	284695	bcgsc.ca	37	1	90475844	90475844	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF326	NM_182976	exon6	c.C813A	p.P271P	.	.	168	6	123	0	.	91
ZNF345	25850	ucsc.edu	37	19	37368922	37368922	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF345	NM_001242476	exon4	c.C1190A	p.P397H	.	.	36	4	38	0	.	91
ZNF350	59348	bcgsc.ca	37	19	52468269	52468269	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF350	NM_021632	exon5	c.C1437A	p.L479L	.	.	62	4	79	1	.	227
ZNF37A	7587	ucsc.edu	37	10	38407308	38407308	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF37A	NM_003421	exon7	c.C1229A	p.P410H	.	.	39	4	17	0	.	90
ZNF441	126068	bcgsc.ca	37	19	11888497	11888497	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF441	NM_152355	exon2	c.G75A	p.Q25Q	.	.	111	5	92	0	.	69
ZNF451	26036	bcgsc.ca	37	6	57012372	57012372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF451	NM_001031623	exon10	c.G1489T	p.G497C	.	.	139	6	147	2	.	93
ZNF461	92283	bcgsc.ca	37	19	37129824	37129824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_153257	exon6	c.G1423T	p.G475C	.	.	51	4	49	0	.	.
ZNF461	92283	bcgsc.ca	37	19	37130442	37130442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_153257	exon6	c.G805T	p.G269C	.	.	113	5	92	1	.	.
ZNF483	158399	broad.mit.edu;bcgsc.ca	37	9	114293228	114293228	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF483	NM_133464	exon3	c.C486A	p.P162P	.	.	232	9	139	0	.	91
ZNF518A	9849	broad.mit.edu;ucsc.edu	37	10	97918109	97918109	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF518A	.	.	.	.	.	.	53	7	68	0	.	23
ZNF546	339327	ucsc.edu;bcgsc.ca	37	19	40520384	40520384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF546	NM_178544	exon7	c.C1207T	p.H403Y	.	.	43	4	45	0	.	155
ZNF569	148266	bcgsc.ca	37	19	37904191	37904191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF569	NM_152484	exon6	c.C1369A	p.Q457K	.	.	102	5	60	0	.	154
ZNF57	126295	bcgsc.ca	37	19	2918127	2918127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF57	NM_173480	exon4	c.C1508A	p.P503H	.	.	67	4	59	1	.	71
ZNF586	54807	bcgsc.ca	37	19	58290528	58290528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF586	NM_001077426	exon2	c.C446A	p.P149Q	.	.	74	5	57	0	.	92
ZNF587B	100293516	bcgsc.ca	37	19	58352888	58352888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001204818	exon3	c.G846T	p.K282N	.	.	56	4	40	0	.	.
ZNF606	80095	bcgsc.ca	37	19	58491611	58491611	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF606	NM_025027	exon7	c.C437A	p.P146Q	.	.	81	5	83	0	.	92
ZNF613	79898	bcgsc.ca	37	19	52448966	52448966	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF613	NM_001031721	exon6	c.A1830G	p.A610A	.	.	51	4	46	0	.	91
ZNF624	57547	bcgsc.ca	37	17	16537176	16537176	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF624	NM_020787	exon5	c.G376T	p.D126Y	.	.	111	5	62	0	.	154
ZNF626	199777	bcgsc.ca	37	19	20808047	20808047	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF626	NM_001076675	exon4	c.C636A	p.H212Q	.	.	21	3	34	0	.	515
ZNF638	27332	ucsc.edu;bcgsc.ca	37	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	.	.	37	4	48	0	.	94
ZNF641	121274	bcgsc.ca	37	12	48740947	48740947	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF641	NM_001172682	exon3	c.C364A	p.H122N	.	.	11	3	18	0	.	92
ZNF644	84146	bcgsc.ca	37	1	91405156	91405156	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF644	NM_201269	exon3	c.C1755A	p.T585T	.	.	132	5	90	0	.	155
ZNF645	158506	bcgsc.ca	37	X	22291154	22291154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF645	NM_152577	exon1	c.G46A	p.E16K	.	.	85	4	141	0	.	131
ZNF671	79891	bcgsc.ca	37	19	58234668	58234668	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF671	NM_024833	exon2	c.G179T	p.R60L	.	.	66	5	104	0	.	91
ZNF700	90592	bcgsc.ca	37	19	12060444	12060444	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF700	NM_001271848	exon4	c.C1614A	p.P538P	.	.	80	6	51	0	.	90
ZNF709	163051	bcgsc.ca	37	19	12574975	12574975	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF709	NM_152601	exon4	c.C1761A	p.P587P	.	.	60	4	71	0	.	90
ZNF713	349075	bcgsc.ca	37	7	56007003	56007003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF713	NM_182633	exon4	c.G597T	p.Q199H	.	.	87	4	66	0	.	92
ZNF714	148206	bcgsc.ca	37	19	21300373	21300373	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF714	NM_182515	exon5	c.A903G	p.K301K	.	.	69	4	64	0	.	67
ZNF724P	440519	bcgsc.ca	37	19	23414100	23414100	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF724P	.	.	.	.	.	.	48	4	41	0	.	23
ZNF729	100287226	bcgsc.ca	37	19	22496540	22496540	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF729	NM_001242680	exon4	c.A321T	p.V107V	.	.	73	5	44	0	.	24
ZNF784	147808	bcgsc.ca	37	19	56133285	56133285	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF784	NM_203374	exon2	c.C804T	p.R268R	.	.	14	4	22	0	.	68
ZNF789	285989	bcgsc.ca	37	7	99077333	99077333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF789	NM_213603	exon3	c.G74T	p.W25L	.	.	106	5	101	0	.	68
ZNF804B	219578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	88963115	88963115	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF804B	NM_181646	exon4	c.A819G	p.T273T	.	.	109	54	119	0	.	101
ZNF841	284371	bcgsc.ca	37	19	52568641	52568641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136499	exon7	c.G2494A	p.E832K	.	.	78	6	73	0	.	.
ZNF841	284371	bcgsc.ca	37	19	52580220	52580220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	.	NM_001136499	exon5	c.G133T	p.G45C	.	.	44	4	32	0	.	.
ZNF846	162993	bcgsc.ca	37	19	9868874	9868874	+	Silent	SNP	A	A	G	rs139817982		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF846	NM_001077624	exon6	c.T879C	p.H293H	.	.	50	4	63	0	A|0.997;G|0.003	23
ZNF99	7652	bcgsc.ca	37	19	22940966	22940966	+	Missense_Mutation	SNP	C	C	A	rs140912526	byfrequency;alternate_allele	TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNF99	NM_001080409	exon4	c.G1745T	p.R582I	.	.	144	5	110	0	C|0.998;T|0.002	24
ZNFX1	57169	bcgsc.ca	37	20	47872378	47872378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZNFX1	NM_021035	exon9	c.A2771G	p.Q924R	.	.	72	5	78	0	.	24
ZRANB3	84083	ucsc.edu;bcgsc.ca	37	2	136029433	136029433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZRANB3	NM_032143	exon10	c.A1111G	p.S371G	.	.	37	4	31	0	.	658
ZSCAN1	284312	bcgsc.ca	37	19	58551885	58551885	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZSCAN1	NM_182572	exon4	c.T438C	p.S146S	.	.	24	4	35	0	.	92
ZSCAN1	284312	bcgsc.ca	37	19	58563880	58563880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZSCAN1	NM_182572	exon5	c.C488A	p.A163E	.	.	52	4	57	0	.	92
ZW10	9183	bcgsc.ca	37	11	113612428	113612428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25U-01A-11D-A16V-10	TCGA-G3-A25U-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	656f2a16-cd8a-4255-b6ff-703f560a74a7	c178796c-e0ab-403c-9ab1-95aa12c72f0e	.	ZW10	NM_004724	exon11	c.C1571A	p.P524Q	.	.	51	4	82	0	.	228
