Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1CF	29974	bcgsc.ca	37	10	52601749	52601749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	A1CF	NM_001198820	exon6	c.G262T	p.G88C	.	.	67	4	49	0	.	68
A2M	2	bcgsc.ca	37	12	9232774	9232774	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	A2M	NM_000014	exon24	c.2771-1G>T	.	.	.	65	4	48	0	.	515
A2ML1	144568	ucsc.edu;bcgsc.ca	37	12	8982345	8982345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	A2ML1	NM_144670	exon4	c.G432T	p.M144I	.	.	39	5	35	0	.	93
AAED1	195827	bcgsc.ca	37	9	99413986	99413986	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_153698	exon3	c.T270C	p.N90N	.	.	72	6	53	0	.	.
ABCA6	23460	bcgsc.ca	37	17	67080419	67080419	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCA6	NM_080284	exon34	c.A4338G	p.T1446T	.	.	67	4	64	0	.	159
ABCA9	10350	bcgsc.ca	37	17	67023850	67023850	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCA9	NM_080283	exon13	c.C1722T	p.L574L	.	.	63	4	49	0	.	95
ABCC12	94160	broad.mit.edu;bcgsc.ca	37	16	48149506	48149506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC12	NM_033226	exon13	c.C1809T	p.L603L	.	.	23	4	25	0	.	93
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48761110	48761110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC3	NM_003786	exon27	c.G3947T	p.G1316V	.	.	19	4	23	0	.	93
ABCC4	10257	bcgsc.ca	37	13	95886916	95886916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABCC4	NM_005845	exon4	c.A479G	p.Q160R	.	.	76	4	50	0	.	515
ABHD5	51099	bcgsc.ca	37	3	43753199	43753199	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABHD5	NM_016006	exon4	c.507-2A>G	.	.	.	100	5	65	0	.	91
ABI3BP	25890	bcgsc.ca	37	3	100472681	100472681	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABI3BP	NM_015429	exon32	c.G2809T	p.V937L	.	.	57	6	46	0	.	138
ABT1	29777	ucsc.edu;bcgsc.ca	37	6	26598733	26598733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ABT1	NM_013375	exon3	c.C679T	p.R227W	.	.	50	4	44	0	.	91
ACADM	34	bcgsc.ca	37	1	76199233	76199233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACADM	NM_001127328	exon5	c.T319C	p.F107L	.	.	231	6	168	0	.	155
ACER3	55331	bcgsc.ca	37	11	76687376	76687376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACER3	NM_018367	exon4	c.T311C	p.V104A	.	.	71	4	44	0	.	90
ACLY	47	bcgsc.ca	37	17	40049370	40049370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACLY	NM_001096	exon15	c.C1517A	p.T506N	.	.	45	4	46	1	.	228
ACMSD	130013	ucsc.edu	37	2	135621131	135621131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACMSD	NM_138326	exon5	c.C416A	p.P139H	.	.	41	4	36	0	.	91
ACSL1	2180	ucsc.edu	37	4	185697777	185697777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACSL1	NM_001995	exon7	c.C617A	p.A206D	.	.	23	4	17	0	.	92
ACSL4	2182	bcgsc.ca	37	X	108924556	108924556	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACSL4	NM_022977	exon6	c.T578A	p.L193Q	.	.	72	4	48	0	.	290
ACSM1	116285	ucsc.edu;bcgsc.ca	37	16	20682931	20682931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACSM1	NM_052956	exon4	c.T674C	p.F225S	.	.	41	4	57	0	.	91
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35083385	35083385	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACTC1	NM_005159	exon6	c.T920C	p.M307T	.	.	79	10	72	0	.	92
ACTR10	55860	bcgsc.ca	37	14	58701088	58701088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACTR10	NM_018477	exon13	c.G1073T	p.G358V	.	.	141	6	107	0	.	90
ACTR3B	57180	ucsc.edu	37	7	152497656	152497656	+	Silent	SNP	T	T	C	rs2462099		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACTR3B	NM_020445	exon3	c.T141C	p.A47A	.	.	108	16	60	5	.	514
ACY1	95	bcgsc.ca	37	3	52019900	52019900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ACY1	NM_001198897	exon5	c.C297A	p.F99L	.	.	35	4	49	1	.	154
ADAD2	161931	bcgsc.ca	37	16	84228060	84228060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADAD2	NM_139174	exon3	c.C647T	p.P216L	.	.	15	4	32	0	.	68
ADAM29	11086	bcgsc.ca	37	4	175897883	175897883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	ADAM29,shoulder,malignant_melanoma,-1	ADAM29	NM_001130703	exon4	c.G1207T	p.G403C	.	.	175	6	151	1	.	729
ADAM7	8756	bcgsc.ca	37	8	24324468	24324468	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADAM7	NM_003817	exon6	c.G546A	p.G182G	.	.	82	4	48	0	.	230
ADAR	103	bcgsc.ca	37	1	154561118	154561118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADAR	NM_001111	exon10	c.T2794C	p.S932P	.	.	84	4	80	0	.	157
ADAT1	23536	ucsc.edu	37	16	75634246	75634246	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADAT1	NM_012091	exon11	c.G1377T	p.R459S	.	.	47	4	46	0	.	92
ADCY10	55811	bcgsc.ca	37	1	167815045	167815045	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADCY10	NM_018417	exon21	c.C2763A	p.I921I	.	.	46	4	37	0	.	493
ADCY10	55811	broad.mit.edu	37	1	167825508	167825508	+	Missense_Mutation	SNP	T	T	C	rs201393165		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADCY10	NM_018417	exon17	c.A2066G	p.N689S	.	.	152	7	153	0	T|0.999;C|0.000	493
ADCY8	114	bcgsc.ca	37	8	131848631	131848631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADCY8	NM_001115	exon12	c.T2567C	p.V856A	.	.	66	5	62	0	.	157
ADD2	119	bcgsc.ca	37	2	70915249	70915249	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADD2	NM_001185055	exon8	c.G903T	p.L301L	.	.	78	4	72	0	.	93
ADH7	131	bcgsc.ca	37	4	100349702	100349702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADH7	NM_001166504	exon3	c.A266G	p.E89G	.	.	78	4	54	0	.	227
ADHFE1	137872	bcgsc.ca	37	8	67356885	67356885	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADHFE1	NM_144650	exon5	c.C255T	p.S85S	.	.	111	5	102	0	.	290
ADSL	158	bcgsc.ca	37	22	40746024	40746024	+	Silent	SNP	T	T	C	rs147017931		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ADSL	NM_001123378	exon2	c.T342C	p.Y114Y	.	.	140	5	112	0	T|1.000;C|0.000	652
AGFG1	3267	bcgsc.ca	37	2	228398459	228398459	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AGFG1	NM_001135187	exon8	c.T1081C	p.F361L	.	.	83	4	52	0	.	228
AGPAT5	55326	bcgsc.ca	37	8	6605221	6605221	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AGPAT5	NM_018361	exon6	c.C617A	p.P206Q	.	.	78	4	65	0	.	90
AGR2	10551	bcgsc.ca	37	7	16840967	16840967	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AGR2	NM_006408	exon3	c.A180G	p.E60E	.	.	199	6	129	0	.	522
AK7	122481	bcgsc.ca	37	14	96912929	96912929	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AK7	NM_152327	exon8	c.G855A	p.L285L	.	.	117	5	108	0	.	228
AKD1	221264	bcgsc.ca	37	6	109819128	109819128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AKD1	NM_001145128	exon37	c.C5087A	p.A1696E	.	.	90	5	68	0	.	91
AKR1A1	10327	bcgsc.ca	37	1	46034229	46034229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AKR1A1	NM_001202413	exon7	c.G625T	p.A209S	.	.	93	5	93	0	.	226
ALDH1L2	160428	bcgsc.ca	37	12	105420507	105420507	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALDH1L2	NM_001034173	exon22	c.G2532A	p.V844V	.	.	63	4	52	0	.	91
ALG13	79868	bcgsc.ca	37	X	110961083	110961083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALG13	NM_001099922	exon9	c.T1015C	p.C339R	.	.	92	4	71	0	.	130
ALG13	79868	ucsc.edu;bcgsc.ca	37	X	110951316	110951316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALG13	NM_001099922	exon4	c.T445C	p.S149P	.	.	40	4	30	0	.	130
ALOX12	239	bcgsc.ca	37	17	6904923	6904923	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALOX12	NM_000697	exon8	c.T954C	p.I318I	.	.	59	4	58	0	.	226
ALOXE3	59344	broad.mit.edu;ucsc.edu	37	17	8012628	8012628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALOXE3	NM_001165960	exon12	c.C1822T	p.L608F	.	.	32	5	53	0	.	229
ALPK1	80216	bcgsc.ca	37	4	113359712	113359712	+	Silent	SNP	C	C	A	rs182236762	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALPK1	NM_001102406	exon13	c.C3261A	p.T1087T	.	.	122	6	95	0	C|0.999;T|0.000	337
ALPP	250	bcgsc.ca	37	2	233245179	233245179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ALPP	NM_001632	exon7	c.A842G	p.D281G	.	.	104	6	144	0	.	91
AMOTL1	154810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94602492	94602492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMOTL1	NM_130847	exon12	c.A2618G	p.K873R	.	.	61	5	65	0	.	91
AMT	275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49458964	49458964	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMT	NM_001164712	exon3	c.T300C	p.S100S	.	.	87	9	82	0	.	91
AMY2B	280	broad.mit.edu;bcgsc.ca	37	1	104114735	104114735	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AMY2B	NM_020978	exon4	c.T172C	p.S58P	.	.	345	9	255	1	.	90
ANK1	286	bcgsc.ca	37	8	41552266	41552266	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ANK1	NM_001142446	exon29	c.C3294A	p.T1098T	.	.	62	4	100	1	.	716
ANKFY1	51479	bcgsc.ca	37	17	4120339	4120339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ANKFY1	NM_001257999	exon4	c.G523A	p.V175M	.	.	73	4	81	0	.	93
ANKLE2	23141	bcgsc.ca	37	12	133311030	133311030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ANKLE2	NM_015114	exon10	c.A1832G	p.K611R	.	.	120	5	154	1	.	68
ANKRD32	84250	bcgsc.ca	37	5	93999487	93999487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ANKRD32	NM_032290	exon11	c.A1242T	p.L414F	.	.	172	7	118	0	.	92
ANO4	121601	bcgsc.ca	37	12	101413860	101413860	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ANO4	NM_178826	exon8	c.T678A	p.S226R	.	.	169	6	134	0	.	96
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24032935	24032935	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AP1G2	NM_003917	exon12	c.G1222C	p.A408P	.	.	39	4	43	0	.	45
APBB1IP	54518	bcgsc.ca	37	10	26856360	26856360	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APBB1IP	NM_019043	exon15	c.A1944G	p.Q648Q	.	.	28	4	37	0	.	652
APLP1	333	ucsc.edu;bcgsc.ca	37	19	36365684	36365684	+	Silent	SNP	G	G	T	rs2228998	byfrequency	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APLP1	NM_005166	exon10	c.G1257T	p.A419A	.	.	35	4	55	0	G|0.988;T|0.012	92
APOA5	116519	bcgsc.ca	37	11	116660970	116660970	+	Silent	SNP	G	G	A	rs137942813	byfrequency	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOA5	NM_001166598	exon4	c.C975T	p.A325A	.	.	77	4	133	0	G|0.995;A|0.005	90
APOBEC1	339	bcgsc.ca	37	12	7805160	7805160	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOBEC1	NM_001644	exon3	c.C316A	p.R106R	.	.	52	4	55	0	.	226
APOL4	80832	bcgsc.ca	37	22	36587549	36587549	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOL4	.	.	.	.	.	.	65	4	47	0	.	90
APOL4	80832	bcgsc.ca	37	22	36587777	36587777	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOL4	.	.	.	.	.	.	62	4	63	0	.	90
APOM	55937	ucsc.edu;bcgsc.ca	37	6	31625487	31625487	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APOM	NM_019101	exon5	c.T528C	p.T176T	.	.	32	4	44	0	.	90
APPL2	55198	bcgsc.ca	37	12	105583806	105583806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APPL2	NM_001251904	exon15	c.C1387A	p.P463T	.	.	72	5	49	0	.	91
APTX	54840	ucsc.edu;bcgsc.ca	37	9	33001565	33001565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	APTX	NM_001195252	exon1	c.G38T	p.R13I	.	.	25	4	23	0	.	91
AQP4	361	bcgsc.ca	37	18	24436183	24436183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AQP4	NM_001650	exon5	c.T964C	p.S322P	.	.	73	4	64	1	.	90
AQR	9716	bcgsc.ca	37	15	35252984	35252984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AQR	NM_014691	exon3	c.T164C	p.V55A	.	.	215	6	184	0	.	135
AR	367	ucsc.edu	37	X	66765070	66765070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AR	NM_000044	exon1	c.C82A	p.Q28K	.	.	41	4	63	0	.	661
ARFGAP3	26286	broad.mit.edu;bcgsc.ca	37	22	43218341	43218341	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARFGAP3	NM_014570	exon9	c.T747C	p.A249A	.	.	234	9	192	0	.	153
ARHGAP12	94134	ucsc.edu	37	10	32099625	32099625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARHGAP12	NM_018287	exon16	c.A2002G	p.T668A	.	.	48	4	45	0	.	227
ARHGAP26	23092	bcgsc.ca	37	5	142292828	142292828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARHGAP26	NM_015071	exon10	c.G998T	p.R333M	.	.	73	5	49	0	.	660
ARHGAP4	393	bcgsc.ca	37	X	153184375	153184375	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARHGAP4	NM_001164741	exon8	c.C1063T	p.P355S	.	.	46	4	68	0	.	227
ARHGEF25	115557	bcgsc.ca	37	12	58008777	58008777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARHGEF25	NM_001111270	exon11	c.G1054A	p.G352R	.	.	73	4	67	0	.	653
ARMC3	219681	bcgsc.ca	37	10	23244743	23244743	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARMC3	NM_173081	exon4	c.A174G	p.E58E	.	.	55	4	44	0	.	90
ARVCF	421	bcgsc.ca	37	22	19959917	19959917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ARVCF	NM_001670	exon17	c.A2659G	p.S887G	.	.	93	5	118	0	.	91
ASB12	142689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63445128	63445128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASB12	NM_130388	exon2	c.A403G	p.S135G	.	.	48	15	47	0	.	228
ASB18	401036	bcgsc.ca	37	2	237104995	237104995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASB18	NM_212556	exon5	c.A1135G	p.I379V	.	.	85	6	100	0	.	227
ASCC1	51008	bcgsc.ca	37	10	73912718	73912718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASCC1	NM_001198799	exon8	c.G739A	p.V247M	.	.	94	4	77	0	.	226
ASCC3	10973	bcgsc.ca	37	6	101253728	101253728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASCC3	NM_006828	exon5	c.T830C	p.L277P	.	.	69	4	37	0	.	96
ASTE1	28990	bcgsc.ca	37	3	130744104	130744104	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASTE1	NM_014065	exon3	c.A47G	p.E16G	.	.	69	5	57	0	.	90
ASXL3	80816	bcgsc.ca	37	18	31311934	31311934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ASXL3	NM_030632	exon9	c.G882T	p.M294I	.	.	218	6	143	1	.	49
ATAD2B	54454	bcgsc.ca	37	2	24080354	24080354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATAD2B	NM_001242338	exon13	c.C1499A	p.S500Y	.	.	207	6	121	0	.	68
ATN1	1822	ucsc.edu;bcgsc.ca	37	12	7047718	7047718	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATN1	NM_001007026	exon7	c.A2592G	p.E864E	.	.	35	4	40	1	.	139
ATP2A1	487	ucsc.edu	37	16	28893833	28893833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP2A1	NM_004320	exon5	c.T386C	p.V129A	.	.	40	4	54	0	.	93
ATP2C1	27032	bcgsc.ca	37	3	130715581	130715581	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP2C1	NM_001199181	exon23	c.T2286C	p.P762P	.	.	145	6	76	1	.	91
ATP5O	539	bcgsc.ca	37	21	35279645	35279645	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP5O	NM_001697	exon5	c.T441C	p.S147S	.	.	55	7	65	0	.	91
ATP5S	27109	bcgsc.ca	37	14	50790711	50790711	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP5S	NM_001003803	exon4	c.T410C	p.I137T	.	.	104	5	107	0	.	92
ATP6V0A2	23545	broad.mit.edu;bcgsc.ca	37	12	124221770	124221770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V0A2	NM_012463	exon9	c.T990C	p.C330C	.	.	69	5	65	0	.	92
ATP6V1H	51606	ucsc.edu;bcgsc.ca	37	8	54742070	54742070	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATP6V1H	NM_015941	exon4	c.G240T	p.L80L	.	.	45	4	25	0	.	90
ATP8A2	51761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	26411378	26411378	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	ATP8A2,NS,carcinoma,+2	ATP8A2	NM_016529	exon29	c.C2832T	p.P944P	.	.	61	13	50	0	.	138
ATRNL1	26033	bcgsc.ca	37	10	117704203	117704203	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATRNL1	NM_207303	exon29	c.A4053T	p.S1351S	.	.	67	4	44	0	.	96
ATXN2	6311	bcgsc.ca	37	12	111895050	111895050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATXN2	NM_002973	exon22	c.G3484T	p.G1162C	.	.	146	5	126	0	.	136
ATXN2	6311	bcgsc.ca	37	12	111947715	111947715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATXN2	NM_002973	exon13	c.T2324C	p.F775S	.	.	267	7	244	2	.	136
ATXN7L1	222255	bcgsc.ca	37	7	105305524	105305524	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ATXN7L1	NM_020725	exon4	c.G567A	p.R189R	.	.	153	6	158	0	.	90
AVPR1B	553	ucsc.edu	37	1	206225073	206225073	+	Silent	SNP	G	G	T	rs150659663	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AVPR1B	NM_000707	exon1	c.G633T	p.P211P	.	.	36	4	60	0	G|1.000;A|0.000	569
AWAT2	158835	bcgsc.ca	37	X	69269735	69269735	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AWAT2	NM_001002254	exon1	c.T48C	p.F16F	.	.	84	5	62	0	.	130
AXL	558	ucsc.edu;bcgsc.ca	37	19	41762488	41762488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AXL	NM_021913	exon18	c.A2168G	p.D723G	.	.	39	4	54	0	.	1403
AZIN1	51582	bcgsc.ca	37	8	103841504	103841504	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	AZIN1	NM_015878	exon12	c.G1231T	p.D411Y	.	.	92	4	81	0	.	90
BBS12	166379	bcgsc.ca	37	4	123663814	123663814	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BBS12	NM_001178007	exon3	c.T767C	p.V256A	.	.	87	4	68	0	.	92
BCAT1	586	bcgsc.ca	37	12	24995136	24995136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BCAT1	NM_001178093	exon7	c.G733T	p.A245S	.	.	62	4	38	0	.	522
BCOR	54880	bcgsc.ca	37	X	39923134	39923134	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BCOR	NM_001123385	exon8	c.A3574G	p.T1192A	.	.	82	5	121	0	.	229
BEST3	144453	bcgsc.ca	37	12	70072596	70072596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BEST3	NM_032735	exon5	c.T559C	p.W187R	.	.	167	5	101	0	.	248
BICD1	636	bcgsc.ca	37	12	32369347	32369347	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BICD1	NM_001714	exon2	c.A380G	p.Q127R	.	.	64	4	69	0	.	153
BIRC6	57448	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32626685	32626685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BIRC6	NM_016252	exon8	c.G1412A	p.G471E	.	.	97	10	86	1	.	233
BLNK	29760	bcgsc.ca	37	10	97976475	97976475	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BLNK	NM_001114094	exon7	c.C541T	p.P181S	.	.	82	4	59	0	.	92
BMS1	9790	bcgsc.ca	37	10	43318589	43318589	+	Missense_Mutation	SNP	A	A	C	rs138847020	byfrequency	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BMS1	NM_014753	exon20	c.A3156C	p.E1052D	.	.	102	6	69	0	A|0.999;C|0.001	93
BNC1	646	bcgsc.ca	37	15	83933517	83933517	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BNC1	NM_001717	exon4	c.A486G	p.E162E	.	.	80	4	73	0	.	93
BORA	79866	bcgsc.ca	37	13	73303157	73303157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_024808	exon2	c.A79G	p.S27G	.	.	83	5	70	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231254	220231254	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BPNT1	.	.	.	.	.	.	149	3	105	0	.	91
BPTF	2186	bcgsc.ca	37	17	65908949	65908949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BPTF	NM_004459	exon13	c.A5327G	p.K1776R	.	.	47	4	50	0	.	94
BPTF	2186	bcgsc.ca	37	17	65942356	65942356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BPTF	NM_182641	exon21	c.A7532G	p.Q2511R	.	.	134	5	117	0	.	94
BRD9	65980	ucsc.edu	37	5	878533	878533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BRD9	NM_023924	exon11	c.C1208A	p.S403X	.	.	44	4	64	0	.	90
BRWD1	54014	bcgsc.ca	37	21	40597079	40597079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BRWD1	NM_018963	exon28	c.A3253G	p.T1085A	.	.	58	4	60	0	.	94
BTG3	10950	bcgsc.ca	37	21	18981462	18981462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BTG3	NM_006806	exon2	c.A1G	p.M1V	.	.	59	4	36	0	.	226
BTN3A1	11119	ucsc.edu;bcgsc.ca	37	6	26413718	26413718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	BTN3A1	NM_007048	exon10	c.C1340T	p.P447L	.	.	59	5	70	0	.	92
C10orf113	387638	bcgsc.ca	37	10	21414909	21414909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C10orf113	NM_001010896	exon2	c.A311G	p.Q104R	.	.	72	4	73	0	.	93
C11orf84	144097	bcgsc.ca	37	11	63586085	63586085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C11orf84	NM_138471	exon4	c.A694G	p.R232G	.	.	27	4	36	0	.	90
C14orf142	84520	bcgsc.ca	37	14	93673229	93673229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C14orf142	NM_032490	exon1	c.G154A	p.V52I	.	.	45	4	66	0	.	90
C14orf182	283551	ucsc.edu;bcgsc.ca	37	14	50459531	50459531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C14orf182	NM_001012706	exon2	c.A267G	p.R89R	.	.	47	5	29	0	.	90
C14orf37	145407	bcgsc.ca	37	14	58605656	58605656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C14orf37	NM_001001872	exon2	c.G421A	p.A141T	.	.	51	4	47	0	.	90
C19orf45	374877	bcgsc.ca	37	19	7570891	7570891	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C19orf45	NM_198534	exon7	c.T1047C	p.H349H	.	.	79	4	100	0	.	90
C1orf213	148898	ucsc.edu;bcgsc.ca	37	1	23696028	23696028	+	RNA	SNP	T	T	C	rs147377149		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C1orf213	.	.	.	.	.	.	44	4	38	0	T|1.000;C|0.000	68
C1orf87	127795	bcgsc.ca	37	1	60505626	60505626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C1orf87	NM_152377	exon5	c.T710C	p.L237P	.	.	47	4	52	0	.	154
C20orf96	140680	bcgsc.ca	37	20	256639	256639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C20orf96	NM_153269	exon10	c.T1001C	p.I334T	.	.	62	4	60	0	.	90
C21orf54	728409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	34540848	34540848	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	60	9	66	0	.	.
C22orf34	348645	bcgsc.ca	37	22	50016905	50016905	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	104	5	112	1	.	.
C2	717	bcgsc.ca	37	6	31910810	31910810	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C2	NM_000063	exon10	c.G1294T	p.G432C	.	.	57	6	67	0	.	92
C2orf57	165100	bcgsc.ca	37	2	232458081	232458081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C2orf57	NM_152614	exon1	c.T419C	p.V140A	.	.	56	4	70	0	.	91
C2orf61	285051	bcgsc.ca	37	2	47314259	47314259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C2orf61	NM_001163561	exon7	c.G635A	p.G212D	.	.	126	5	136	0	.	68
C3orf17	25871	bcgsc.ca	37	3	112738493	112738493	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C3orf17	NM_015412	exon1	c.T2C	p.M1T	.	.	19	3	43	0	.	90
C7orf57	136288	bcgsc.ca	37	7	48083186	48083186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C7orf57	NM_001100159	exon4	c.A350G	p.E117G	.	.	93	5	98	0	.	1
C9orf152	401546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	112963511	112963511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	C9orf152	NM_001012993	exon2	c.G437A	p.G146E	.	.	107	18	141	0	.	90
CAAP1	79886	bcgsc.ca	37	9	26887350	26887350	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_024828	exon2	c.A465G	p.G155G	.	.	73	4	60	0	.	.
CACNA1D	776	ucsc.edu;bcgsc.ca	37	3	53835346	53835346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CACNA1D	NM_000720	exon43	c.C5362T	p.H1788Y	.	.	42	4	53	0	.	100
CACNA1H	8912	bcgsc.ca	37	16	1257371	1257371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CACNA1H	NM_021098	exon14	c.G3004T	p.G1002C	.	.	63	4	90	0	.	67
CACNA1H	8912	bcgsc.ca	37	16	1262022	1262022	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CACNA1H	NM_021098	exon25	c.A4643G	p.N1548S	.	.	95	6	192	0	.	67
CALHM1	255022	ucsc.edu;bcgsc.ca	37	10	105218131	105218131	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CALHM1	NM_001001412	exon1	c.C378A	p.L126L	.	.	31	4	57	0	.	91
CAMSAP1	157922	bcgsc.ca	37	9	138742078	138742078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAMSAP1	NM_015447	exon7	c.C950A	p.P317Q	.	.	70	5	79	0	.	92
CAMTA2	23125	ucsc.edu;bcgsc.ca	37	17	4883887	4883887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAMTA2	NM_001171167	exon9	c.A799G	p.S267G	.	.	43	4	62	0	.	91
CAND1	55832	bcgsc.ca	37	12	67686422	67686422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAND1	NM_018448	exon3	c.A233G	p.K78R	.	.	132	5	74	0	.	516
CAND1	55832	bcgsc.ca	37	12	67699972	67699972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAND1	NM_018448	exon10	c.C2524T	p.L842F	.	.	73	5	60	0	.	516
CAPN9	10753	bcgsc.ca	37	1	230927644	230927644	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAPN9	NM_006615	exon15	c.C1692A	p.I564I	.	.	80	4	91	0	.	91
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75692559	75692559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CAPS2	NM_032606	exon12	c.A1009G	p.T337A	.	.	95	12	76	0	.	92
CARD10	29775	bcgsc.ca	37	22	37903925	37903925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CARD10	NM_014550	exon6	c.C1102A	p.R368S	.	.	95	5	100	0	.	662
CASC5	57082	bcgsc.ca	37	15	40913484	40913484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CASC5	NM_170589	exon11	c.A1100G	p.N367S	.	.	69	4	63	0	.	660
CASC5	57082	bcgsc.ca	37	15	40937196	40937196	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CASC5	NM_170589	exon16	c.T5878C	p.L1960L	.	.	79	4	40	0	.	660
CASP5	838	bcgsc.ca	37	11	104877864	104877864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CASP5	NM_001136112	exon3	c.C418A	p.Q140K	.	.	125	5	76	0	.	661
CATSPER4	378807	bcgsc.ca	37	1	26526466	26526466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CATSPER4	NM_198137	exon7	c.T904C	p.F302L	.	.	44	4	50	0	.	91
CBL	867	bcgsc.ca	37	11	119155701	119155701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CBL	NM_005188	exon10	c.T1454C	p.F485S	.	.	75	4	51	1	.	4020
CCBL1	883	bcgsc.ca	37	9	131597650	131597650	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCBL1	NM_001122671	exon11	c.G1074T	p.V358V	.	.	61	5	50	0	.	91
CCBL2	56267	bcgsc.ca	37	1	89420908	89420908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCBL2	NM_001008661	exon9	c.C788A	p.A263D	.	.	57	4	46	0	.	91
CCDC110	256309	bcgsc.ca	37	4	186380388	186380388	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC110	NM_152775	exon6	c.A1353G	p.E451E	.	.	150	6	105	0	.	90
CCDC136	64753	bcgsc.ca	37	7	128455697	128455697	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC136	NM_022742	exon16	c.C3075T	p.A1025A	.	.	209	6	178	0	.	24
CCDC141	285025	bcgsc.ca	37	2	179718211	179718211	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC141	NM_173648	exon20	c.A3201G	p.E1067E	.	.	92	4	105	1	.	78
CCDC144C	348254	bcgsc.ca	37	17	20305499	20305499	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	174	25	113	0	.	.
CCDC60	160777	ucsc.edu;bcgsc.ca	37	12	119916935	119916935	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC60	NM_178499	exon4	c.T378C	p.A126A	.	.	45	4	40	0	.	93
CCDC62	84660	bcgsc.ca	37	12	123282649	123282649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC62	NM_201435	exon8	c.G879T	p.Q293H	.	.	122	6	122	1	.	157
CCDC63	160762	bcgsc.ca	37	12	111296466	111296466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC63	NM_152591	exon4	c.A256G	p.M86V	.	.	71	5	70	0	.	134
CCDC67	159989	bcgsc.ca	37	11	93118606	93118606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC67	NM_181645	exon8	c.T832C	p.S278P	.	.	136	6	59	0	.	91
CCDC68	80323	bcgsc.ca	37	18	52586533	52586533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC68	NM_025214	exon9	c.A758G	p.Q253R	.	.	47	4	42	0	.	91
CCDC81	60494	bcgsc.ca	37	11	86126235	86126235	+	Missense_Mutation	SNP	G	G	T	rs142365080	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCDC81	NM_001156474	exon13	c.G1571T	p.R524L	.	.	79	4	63	0	G|1.000;A|0.000	91
CCER1	196477	bcgsc.ca	37	12	91347642	91347642	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_152638	exon1	c.A878G	p.E293G	.	.	113	6	113	0	.	.
CCL26	10344	bcgsc.ca	37	7	75401477	75401477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CCL26	NM_006072	exon2	c.G18T	p.L6F	.	.	58	4	50	0	.	90
CD34	947	bcgsc.ca	37	1	208061158	208061158	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CD34	NM_001025109	exon8	c.A1083G	p.E361E	.	.	76	4	87	0	.	91
CDC20	991	bcgsc.ca	37	1	43827948	43827948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDC20	NM_001255	exon10	c.A1286G	p.K429R	.	.	149	6	162	0	.	227
CDC25A	993	bcgsc.ca	37	3	48207366	48207366	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDC25A	NM_001789	exon11	c.A1047G	p.T349T	.	.	161	6	99	0	.	847
CDC73	79577	bcgsc.ca	37	1	193119464	193119464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDC73	NM_024529	exon9	c.C859T	p.P287S	.	.	72	5	36	0	.	1009
CDH22	64405	broad.mit.edu	37	20	44815330	44815330	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDH22	NM_021248	exon10	c.C1560A	p.I520I	.	.	54	4	41	1	.	95
CDK13	8621	ucsc.edu	37	7	40118323	40118323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDK13	NM_003718	exon11	c.C2902A	p.P968T	.	.	43	4	17	0	.	548
CDK18	5129	bcgsc.ca	37	1	205495958	205495958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDK18	NM_212503	exon8	c.A812G	p.N271S	.	.	80	4	104	0	.	521
CDK7	1022	ucsc.edu;bcgsc.ca	37	5	68555712	68555712	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDK7	NM_001799	exon7	c.C476A	p.A159D	.	.	43	4	36	0	.	964
CDS1	1040	bcgsc.ca	37	4	85566464	85566464	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDS1	NM_001263	exon12	c.C1242A	p.I414I	.	.	73	4	66	0	.	155
CDV3	55573	bcgsc.ca	37	3	133302888	133302888	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDV3	NM_001134422	exon3	c.A360T	p.P120P	.	.	200	6	143	0	.	90
CDYL	9425	bcgsc.ca	37	6	4937862	4937862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CDYL	NM_004824	exon4	c.C1012T	p.L338F	.	.	85	4	84	0	.	90
CELA3B	23436	bcgsc.ca	37	1	22310750	22310750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CELA3B	NM_007352	exon6	c.A568G	p.R190G	.	.	72	4	102	0	.	91
CELF5	60680	bcgsc.ca	37	19	3281336	3281336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CELF5	NM_021938	exon6	c.C743A	p.A248D	.	.	11	3	20	0	.	92
CELSR1	9620	bcgsc.ca	37	22	46795692	46795692	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CELSR1	NM_014246	exon10	c.G5334A	p.L1778L	.	.	64	4	55	0	.	525
CENPF	1063	bcgsc.ca	37	1	214818220	214818220	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CENPF	NM_016343	exon13	c.C5307A	p.I1769I	.	.	121	5	107	0	.	567
CENPI	2491	bcgsc.ca	37	X	100356212	100356212	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CENPI	NM_006733	exon2	c.G153T	p.V51V	.	.	63	4	57	0	.	130
CEP135	9662	bcgsc.ca	37	4	56876025	56876025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CEP135	NM_025009	exon19	c.A2461G	p.R821G	.	.	171	6	134	0	.	94
CEP152	22995	bcgsc.ca	37	15	49081013	49081013	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CEP152	NM_014985	exon9	c.C1158A	p.T386T	.	.	77	4	80	1	.	70
CEP164	22897	bcgsc.ca	37	11	117233253	117233253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CEP164	NM_001271933	exon6	c.A686G	p.Q229R	.	.	93	6	97	0	.	69
CEP192	55125	bcgsc.ca	37	18	13052984	13052984	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CEP192	NM_032142	exon18	c.T3084C	p.S1028S	.	.	52	4	44	1	.	27
CETN2	1069	bcgsc.ca	37	X	151997209	151997209	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CETN2	NM_004344	exon4	c.G301T	p.D101Y	.	.	61	4	38	0	.	130
CHD2	1106	bcgsc.ca	37	15	93563367	93563367	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD2	NM_001271	exon38	c.C5032A	p.R1678R	.	.	53	4	63	0	.	229
CHD7	55636	bcgsc.ca	37	8	61769377	61769377	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD7	NM_017780	exon34	c.G7538T	p.R2513L	.	.	87	5	110	0	.	141
CHD9	80205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	53340280	53340280	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHD9	NM_025134	exon32	c.6751delT	p.Y2251fs	.	.	97	15	90	0	.	272
CHI3L2	1117	bcgsc.ca	37	1	111773540	111773540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHI3L2	NM_004000	exon3	c.C247A	p.Q83K	.	.	58	4	45	0	.	514
CHST2	9435	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	142841015	142841015	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CHST2	NM_004267	exon2	c.C1357T	p.Q453X	.	.	74	11	86	0	.	93
CIR1	9541	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	175244954	175244954	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CIR1	NM_004882	exon6	c.C342T	p.I114I	.	.	144	17	96	0	.	153
CLCA4	22802	bcgsc.ca	37	1	87045718	87045718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CLCA4	NM_012128	exon14	c.C2450T	p.P817L	.	.	89	5	51	0	.	92
CLIC2	1193	bcgsc.ca	37	X	154563685	154563685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CLIC2	NM_001289	exon1	c.G52A	p.V18I	.	.	75	4	70	0	.	194
CLIP1	6249	bcgsc.ca	37	12	122825634	122825634	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CLIP1	NM_001247997	exon11	c.A2117G	p.K706R	.	.	274	8	196	0	.	155
CLNK	116449	bcgsc.ca	37	4	10566401	10566401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CLNK	NM_052964	exon7	c.A293G	p.D98G	.	.	80	4	56	0	.	23
CMAHP	8418	bcgsc.ca	37	6	25109807	25109807	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	60	4	64	0	.	.
CMBL	134147	bcgsc.ca	37	5	10286608	10286608	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CMBL	NM_138809	exon4	c.A324G	p.R108R	.	.	30	4	25	0	.	69
CMYA5	202333	bcgsc.ca	37	5	79027573	79027573	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CMYA5	NM_153610	exon2	c.G2985T	p.A995A	.	.	59	4	42	0	.	77
CMYA5	202333	bcgsc.ca	37	5	79028631	79028631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CMYA5	NM_153610	exon2	c.A4043G	p.E1348G	.	.	77	4	42	0	.	77
CNN3	1266	bcgsc.ca	37	1	95363572	95363572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNN3	NM_001839	exon7	c.A716G	p.D239G	.	.	127	5	79	0	.	90
CNNM4	26504	bcgsc.ca	37	2	97427804	97427804	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNNM4	NM_020184	exon1	c.A1068G	p.K356K	.	.	96	6	112	0	.	154
CNOT1	23019	bcgsc.ca	37	16	58622790	58622790	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNOT1	NM_206999	exon3	c.T123C	p.P41P	.	.	53	4	45	0	.	95
CNPPD1	27013	ucsc.edu;bcgsc.ca	37	2	220037312	220037312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNPPD1	NM_015680	exon8	c.G1229A	p.G410D	.	.	30	4	38	0	.	90
CNTN3	5067	bcgsc.ca	37	3	74413646	74413646	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNTN3	NM_020872	exon9	c.T1185A	p.V395V	.	.	135	5	68	0	.	137
CNTN6	27255	bcgsc.ca	37	3	1425027	1425027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNTN6	NM_014461	exon19	c.G2452A	p.E818K	.	.	103	6	73	0	.	345
CNTROB	116840	bcgsc.ca	37	17	7852750	7852750	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CNTROB	NM_001037144	exon19	c.T2700C	p.T900T	.	.	51	4	60	0	.	153
COG3	83548	bcgsc.ca	37	13	46054318	46054318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COG3	NM_031431	exon4	c.G442A	p.V148I	.	.	161	7	136	0	.	154
COL11A1	1301	broad.mit.edu;bcgsc.ca	37	1	103481238	103481238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon12	c.A1510G	p.M504V	.	.	260	13	223	1	.	586
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103343720	103343720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL11A1	NM_080629	exon67	c.C5312A	p.S1771Y	.	.	103	14	48	0	.	586
COL15A1	1306	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101829192	101829192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL15A1	NM_001855	exon40	c.T3680C	p.F1227S	.	.	46	8	45	0	.	96
COL18A1	80781	bcgsc.ca	37	21	46909400	46909400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL18A1	NM_030582	exon18	c.G2464A	p.G822R	.	.	49	4	81	0	.	90
COL27A1	85301	bcgsc.ca	37	9	116931422	116931422	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL27A1	NM_032888	exon3	c.T1587C	p.A529A	.	.	70	4	89	0	.	94
COL3A1	1281	bcgsc.ca	37	2	189875541	189875541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL3A1	NM_000090	exon50	c.G4179A	p.M1393I	.	.	85	4	78	0	.	581
COL4A3	1285	bcgsc.ca	37	2	228134630	228134630	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL4A3	NM_000091	exon24	c.A1509T	p.R503S	.	.	97	5	64	0	.	132
COL4A4	1286	bcgsc.ca	37	2	227872235	227872235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL4A4	NM_000092	exon48	c.A4879G	p.R1627G	.	.	52	4	64	0	.	142
COL7A1	1294	bcgsc.ca	37	3	48621730	48621730	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COL7A1	NM_000094	exon37	c.4197+1G>A	.	.	.	50	4	54	0	.	160
COMMD9	29099	bcgsc.ca	37	11	36300051	36300051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	COMMD9	NM_014186	exon3	c.T293C	p.L98P	.	.	88	6	59	0	.	91
CORIN	10699	bcgsc.ca	37	4	47625929	47625929	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CORIN	NM_006587	exon18	c.G2352A	p.L784L	.	.	146	5	94	0	.	91
CPA3	1359	bcgsc.ca	37	3	148596482	148596482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CPA3	NM_001870	exon5	c.T421C	p.S141P	.	.	89	5	55	0	.	154
CPOX	1371	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98304402	98304402	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CPOX	NM_000097	exon5	c.G1055T	p.R352L	.	.	75	6	71	0	.	90
CPT1C	126129	bcgsc.ca	37	19	50209233	50209233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CPT1C	NM_001199752	exon11	c.G1032T	p.M344I	.	.	55	4	52	0	.	92
CR1	1378	bcgsc.ca	37	1	207758024	207758024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CR1	NM_000651	exon33	c.T5333C	p.L1778P	.	.	83	4	81	0	.	93
CRCP	27297	ucsc.edu;bcgsc.ca	37	7	65617296	65617296	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CRCP	NM_014478	exon6	c.G399A	p.K133K	.	.	34	4	38	0	.	90
CRHBP	1393	bcgsc.ca	37	5	76251641	76251641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CRHBP	NM_001882	exon4	c.C497T	p.P166L	.	.	65	4	78	0	.	90
CSNK1A1L	122011	bcgsc.ca	37	13	37679154	37679154	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK1A1L	NM_145203	exon1	c.T240C	p.G80G	.	.	56	4	53	0	.	396
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	37678905	37678906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK1A1L	NM_145203	exon1	c.489_490insA	p.K163fs	.	.	286	43	323	0	.	396
CSNK2A2	1459	bcgsc.ca	37	16	58201130	58201130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSNK2A2	NM_001896	exon8	c.G707A	p.G236E	.	.	79	5	48	0	.	790
CSRP1	1465	bcgsc.ca	37	1	201459398	201459398	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CSRP1	NM_001193572	exon3	c.G187T	p.G63C	.	.	56	4	63	0	.	91
CTTNBP2	83992	bcgsc.ca	37	7	117385943	117385943	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CTTNBP2	NM_033427	exon14	c.A3477G	p.R1159R	.	.	118	5	78	0	.	94
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101671397	101671397	+	Missense_Mutation	SNP	C	C	T	rs143267032	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CUX1	NM_181500	exon3	c.C194T	p.A65V	.	.	81	9	82	0	C|1.000;G|0.000	160
CXorf56	63932	bcgsc.ca	37	X	118678363	118678363	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CXorf56	NM_022101	exon4	c.T376C	p.F126L	.	.	59	5	45	0	.	130
CXorf57	55086	bcgsc.ca	37	X	105921405	105921405	+	Missense_Mutation	SNP	G	G	T	rs184295976	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CXorf57	NM_018015	exon14	c.G2485T	p.G829C	.	.	50	4	31	0	G|0.999;A|0.001	131
CYB5R1	51706	ucsc.edu;bcgsc.ca	37	1	202935660	202935660	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYB5R1	NM_016243	exon3	c.T234C	p.P78P	.	.	41	4	53	0	.	91
CYHR1	50626	bcgsc.ca	37	8	145676086	145676086	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYHR1	NM_138496	exon5	c.C765T	p.F255F	.	.	65	4	87	0	.	90
CYLC2	1539	bcgsc.ca	37	9	105765539	105765539	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYLC2	NM_001340	exon3	c.G174A	p.T58T	.	.	78	4	57	0	.	91
CYLD	1540	bcgsc.ca	37	16	50784026	50784026	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYLD	NM_001042355	exon3	c.A417G	p.E139E	.	.	53	4	42	0	.	2444
CYP11A1	1583	bcgsc.ca	37	15	74631619	74631619	+	Missense_Mutation	SNP	C	C	T	rs200029503	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYP11A1	NM_000781	exon7	c.G1195A	p.V399I	.	.	83	4	105	0	C|0.999;A|0.000	92
CYP2A13	1553	ucsc.edu;bcgsc.ca	37	19	41595994	41595994	+	Missense_Mutation	SNP	G	G	A	rs138225940	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYP2A13	NM_000766	exon3	c.G386A	p.R129H	.	.	49	4	54	0	G|0.999;C|0.001	93
CYP3A7	1551	bcgsc.ca	37	7	99332652	99332652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYP3A7	NM_000765	exon1	c.T65C	p.L22P	.	.	84	6	44	0	.	91
CYTH1	9267	bcgsc.ca	37	17	76695050	76695050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	CYTH1	NM_017456	exon8	c.A551G	p.D184G	.	.	46	4	51	0	.	228
DCAF12L2	340578	ucsc.edu	37	X	125299044	125299044	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DCAF12L2	NM_001013628	exon1	c.G864A	p.L288L	.	.	41	4	45	0	.	113
DCAF17	80067	bcgsc.ca	37	2	172305280	172305280	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DCAF17	NM_001164821	exon4	c.G411T	p.T137T	.	.	202	8	132	0	.	90
DCHS2	54798	bcgsc.ca	37	4	155305584	155305584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DCHS2	NM_017639	exon2	c.A170G	p.E57G	.	.	87	5	86	1	.	94
DDB2	1643	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	47256456	47256456	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDB2	NM_000107	exon6	c.C851A	p.S284X	.	.	63	11	86	0	.	971
DDR1	780	bcgsc.ca	37	6	30865977	30865977	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDR1	NM_013994	exon15	c.A2362G	p.I788V	.	.	56	4	73	0	.	1403
DDX43	55510	bcgsc.ca	37	6	74115511	74115511	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDX43	NM_018665	exon6	c.A760T	p.M254L	.	.	57	4	46	0	.	229
DDX4	54514	ucsc.edu	37	5	55088627	55088627	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DDX4	NM_024415	exon17	c.A1461G	p.E487E	.	.	34	4	20	0	.	227
DEK	7913	bcgsc.ca	37	6	18249888	18249888	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DEK	NM_003472	exon7	c.A756G	p.E252E	.	.	182	7	95	0	.	658
DENND4C	55667	bcgsc.ca	37	9	19324371	19324371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DENND4C	NM_017925	exon13	c.A1819G	p.S607G	.	.	159	6	98	0	.	92
DENND4C	55667	bcgsc.ca	37	9	19346059	19346059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DENND4C	NM_017925	exon22	c.T3145C	p.S1049P	.	.	67	5	37	0	.	92
DENND4C	55667	bcgsc.ca	37	9	19352159	19352159	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DENND4C	NM_017925	exon24	c.C4437A	p.I1479I	.	.	56	4	54	0	.	92
DGAT2L6	347516	bcgsc.ca	37	X	69424925	69424925	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DGAT2L6	NM_198512	exon7	c.T983C	p.L328P	.	.	65	4	50	0	.	131
DGKE	8526	bcgsc.ca	37	17	54935975	54935975	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DGKE	NM_003647	exon9	c.A1233G	p.G411G	.	.	69	5	37	0	.	289
DGKH	160851	bcgsc.ca	37	13	42763428	42763428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DGKH	NM_001204504	exon16	c.T1895C	p.I632T	.	.	79	4	62	0	.	652
DHRS7B	25979	bcgsc.ca	37	17	21092064	21092064	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DHRS7B	NM_015510	exon6	c.T660C	p.C220C	.	.	54	4	42	0	.	91
DHX16	8449	ucsc.edu;bcgsc.ca	37	6	30633483	30633483	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DHX16	NM_003587	exon5	c.C694A	p.R232R	.	.	16	4	21	0	.	228
DIO1	1733	bcgsc.ca	37	1	54375648	54375648	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DIO1	NM_001039715	exon3	c.T582C	p.A194A	.	.	42	4	54	0	.	90
DIP2A	23181	ucsc.edu	37	21	47977656	47977656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DIP2A	NM_015151	exon31	c.G3788T	p.G1263V	.	.	48	4	52	0	.	24
DIP2B	57609	bcgsc.ca	37	12	51076965	51076965	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DIP2B	NM_173602	exon10	c.G1251A	p.V417V	.	.	75	5	55	0	.	95
DLX2	1746	bcgsc.ca	37	2	172965573	172965573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DLX2	NM_004405	exon3	c.C685A	p.P229T	.	.	102	7	134	0	.	515
DMD	1756	bcgsc.ca	37	X	32486758	32486758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DMD	NM_004006	exon23	c.T3019C	p.S1007P	.	.	133	6	88	0	.	265
DMXL2	23312	bcgsc.ca	37	15	51742353	51742353	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DMXL2	NM_001174116	exon42	c.C8877A	p.T2959T	.	.	142	6	113	0	.	99
DMXL2	23312	bcgsc.ca	37	15	51799369	51799369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DMXL2	NM_001174117	exon16	c.T2726C	p.M909T	.	.	121	5	88	0	.	99
DNAH10	196385	ucsc.edu;bcgsc.ca	37	12	124341692	124341692	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH10	NM_207437	exon36	c.T6174C	p.D2058D	.	.	46	5	46	0	.	95
DNAH11	8701	bcgsc.ca	37	7	21913005	21913005	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH11	.	.	.	.	.	.	77	4	61	0	.	146
DNAH11	8701	bcgsc.ca	37	7	21934549	21934549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH11	.	.	.	.	.	.	88	4	78	0	.	146
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21940749	21940749	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH11	.	.	.	.	.	.	41	8	63	0	.	146
DNAH1	25981	ucsc.edu;bcgsc.ca	37	3	52388935	52388935	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH1	NM_015512	exon21	c.T3557C	p.I1186T	.	.	46	4	50	0	.	67
DNAH5	1767	broad.mit.edu;bcgsc.ca	37	5	13716732	13716732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH5	NM_001369	exon74	c.A12773G	p.D4258G	.	.	106	8	99	0	.	182
DNAH6	1768	bcgsc.ca	37	2	84848595	84848595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH6	NM_001370	exon26	c.C3991A	p.R1331S	.	.	126	5	94	0	.	69
DNAH8	1769	bcgsc.ca	37	6	38899718	38899718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH8	NM_001206927	exon76	c.G11406A	p.M3802I	.	.	62	5	55	0	.	615
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	6	38899596	38899596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAH8	NM_001206927	exon76	c.G11284T	p.G3762C	.	.	153	8	77	0	.	615
DNAJC24	120526	bcgsc.ca	37	11	31392389	31392389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAJC24	NM_181706	exon2	c.C94A	p.Q32K	.	.	169	6	124	0	.	153
DNAJC24	120526	broad.mit.edu;bcgsc.ca	37	11	31436406	31436406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNAJC24	NM_181706	exon3	c.G160A	p.E54K	.	.	97	10	68	0	.	153
DNER	92737	bcgsc.ca	37	2	230282895	230282895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DNER	NM_139072	exon9	c.C1538T	p.P513L	.	.	76	4	50	0	.	524
DOCK10	55619	bcgsc.ca	37	2	225709545	225709545	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOCK10	NM_014689	exon22	c.T2493C	p.S831S	.	.	100	5	95	0	.	92
DOCK10	55619	bcgsc.ca	37	2	225729786	225729786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOCK10	NM_014689	exon12	c.A1276G	p.S426G	.	.	75	5	68	0	.	92
DOCK2	1794	bcgsc.ca	37	5	169461538	169461538	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOCK2	NM_004946	exon35	c.G3603A	p.M1201I	.	.	29	4	26	0	.	97
DOCK7	85440	bcgsc.ca	37	1	63005465	63005465	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOCK7	NM_001271999	exon26	c.T3144C	p.L1048L	.	.	151	5	117	0	.	92
DOCK8	81704	bcgsc.ca	37	9	441973	441973	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOCK8	NM_203447	exon42	c.A5454G	p.A1818A	.	.	49	4	39	0	.	517
DOK7	285489	ucsc.edu;bcgsc.ca	37	4	3491480	3491480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DOK7	NM_001164673	exon6	c.G718A	p.A240T	.	.	50	5	64	0	.	91
DPAGT1	1798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118967763	118967763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPAGT1	NM_001382	exon9	c.G1172A	p.S391N	.	.	110	12	117	1	.	221
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154645528	154645528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPP6	NM_130797	exon17	c.G1705T	p.D569Y	.	.	154	41	145	0	.	652
DPY19L1	23333	bcgsc.ca	37	7	35051054	35051054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DPY19L1	NM_015283	exon5	c.G339T	p.L113F	.	.	133	5	93	1	.	68
DQX1	165545	bcgsc.ca	37	2	74752848	74752848	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DQX1	NM_133637	exon2	c.T9C	p.S3S	.	.	38	4	55	0	.	92
DRAM2	128338	bcgsc.ca	37	1	111660876	111660876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DRAM2	NM_178454	exon9	c.G707A	p.R236Q	.	.	94	4	49	0	.	90
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28648117	28648117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DSC2	NM_024422	exon16	c.A2570G	p.Y857C	.	.	133	30	93	0	.	517
DSG1	1828	bcgsc.ca	37	18	28911766	28911766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DSG1	NM_001942	exon6	c.C620A	p.P207Q	.	.	162	5	89	0	.	519
DST	667	broad.mit.edu;bcgsc.ca	37	6	56373388	56373388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	DST	NM_015548	exon56	c.G11309T	p.R3770L	.	.	284	9	220	0	.	523
E2F7	144455	bcgsc.ca	37	12	77458374	77458374	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	E2F7	NM_203394	exon2	c.C42T	p.P14P	.	.	177	6	138	0	.	228
E4F1	1877	bcgsc.ca	37	16	2283130	2283130	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	E4F1	NM_004424	exon7	c.A1002G	p.E334E	.	.	36	4	62	0	.	187
ECD	11319	bcgsc.ca	37	10	74894518	74894518	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ECD	NM_001135752	exon15	c.G1857T	p.T619T	.	.	135	6	115	0	.	91
ECT2	1894	bcgsc.ca	37	3	172523605	172523605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ECT2	NM_001258315	exon21	c.C2191T	p.H731Y	.	.	53	4	33	0	.	724
EEF1A1	1915	broad.mit.edu;bcgsc.ca	37	6	74227627	74227627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.C1295T	p.T432I	.	.	113	16	84	0	.	226
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227628	74227628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEF1A1	NM_001402	exon8	c.A1294T	p.T432S	.	.	113	18	84	0	.	226
EEPD1	80820	bcgsc.ca	37	7	36327379	36327379	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EEPD1	NM_030636	exon6	c.C1308T	p.T436T	.	.	73	4	95	0	.	68
EFHB	151651	ucsc.edu;bcgsc.ca	37	3	19962061	19962061	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EFHB	NM_144715	exon3	c.790-2A>G	.	.	.	39	5	51	0	.	22
EFHC1	114327	bcgsc.ca	37	6	52329761	52329761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EFHC1	NM_018100	exon6	c.T985C	p.F329L	.	.	202	7	140	0	.	93
EIF1AD	84285	ucsc.edu;bcgsc.ca	37	11	65766855	65766855	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EIF1AD	NM_001242483	exon5	c.T319C	p.S107P	.	.	44	4	41	0	.	68
EIF2B5	8893	bcgsc.ca	37	3	183860859	183860859	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EIF2B5	NM_003907	exon12	c.A1674T	p.L558F	.	.	80	5	82	0	.	95
ELK4	2005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205588972	205588972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELK4	NM_021795	exon3	c.G1202A	p.C401Y	.	.	103	17	82	0	.	658
ELMOD1	55531	bcgsc.ca	37	11	107526670	107526670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_018712	exon11	c.C710T	p.A237V	.	.	151	5	147	0	.	.
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	79356902	79356902	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ELTD1	NM_022159	exon16	c.2011-1G>A	.	.	.	286	40	181	0	.	24
EMCN	51705	bcgsc.ca	37	4	101344179	101344179	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EMCN	NM_016242	exon7	c.C567T	p.S189S	.	.	106	6	58	0	.	90
EML4	27436	bcgsc.ca	37	2	42552645	42552645	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EML4	NM_019063	exon20	c.A2193G	p.P731P	.	.	120	5	68	0	.	3734
EML6	400954	ucsc.edu	37	2	55195866	55195866	+	Silent	SNP	T	T	C	rs140418202	by1000genomes	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001039753	exon40	c.T5814C	p.D1938D	.	.	35	4	33	0	T|0.999;C|0.001	.
ERAP2	64167	bcgsc.ca	37	5	96215951	96215951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ERAP2	NM_001130140	exon2	c.G562T	p.G188C	.	.	105	6	73	0	.	68
ERCC4	2072	bcgsc.ca	37	16	14021993	14021993	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ERCC4	NM_005236	exon4	c.C693T	p.D231D	.	.	60	4	43	0	.	665
ERMAP	114625	bcgsc.ca	37	1	43296760	43296760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ERMAP	NM_001017922	exon4	c.A407G	p.E136G	.	.	75	5	71	0	.	91
ERMN	57471	bcgsc.ca	37	2	158181267	158181267	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ERMN	NM_001009959	exon3	c.A288G	p.P96P	.	.	74	4	50	0	.	92
ERN1	2081	ucsc.edu	37	17	62149354	62149354	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ERN1	NM_001433	exon6	c.T465C	p.Y155Y	.	.	40	4	26	0	.	784
ESPNL	339768	ucsc.edu;bcgsc.ca	37	2	239010582	239010582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ESPNL	NM_194312	exon2	c.G295T	p.D99Y	.	.	20	4	47	0	.	69
ESRP2	80004	bcgsc.ca	37	16	68267282	68267282	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ESRP2	NM_024939	exon5	c.G603T	p.W201C	.	.	77	4	86	0	.	91
ESYT3	83850	bcgsc.ca	37	3	138189797	138189797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ESYT3	NM_031913	exon17	c.A1669G	p.T557A	.	.	45	5	40	0	.	90
ETFDH	2110	bcgsc.ca	37	4	159627931	159627931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ETFDH	NM_004453	exon12	c.G1619T	p.R540M	.	.	60	4	58	0	.	154
ETV6	2120	bcgsc.ca	37	12	12006449	12006449	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ETV6	NM_001987	exon4	c.T417A	p.S139S	.	.	76	4	95	0	.	1674
EXOSC7	23016	bcgsc.ca	37	3	45052761	45052761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EXOSC7	NM_015004	exon8	c.C806T	p.S269F	.	.	65	4	80	0	.	90
EYS	346007	bcgsc.ca	37	6	65707485	65707485	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	EYS	NM_001142800	exon14	c.A2249G	p.D750G	.	.	114	5	99	1	.	660
F8	2157	bcgsc.ca	37	X	154159871	154159871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	F8	NM_000132	exon14	c.A2194G	p.K732E	.	.	60	5	53	0	.	182
FAM107A	11170	bcgsc.ca	37	3	58553055	58553055	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM107A	NM_001076778	exon3	c.T207C	p.R69R	.	.	77	5	62	0	.	278
FAM111B	374393	bcgsc.ca	37	11	58892195	58892195	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM111B	NM_198947	exon4	c.A625G	p.S209G	.	.	88	4	47	0	.	92
FAM124B	79843	ucsc.edu;bcgsc.ca	37	2	225265789	225265789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM124B	NM_024785	exon1	c.A697G	p.T233A	.	.	26	4	38	0	.	92
FAM149B1	317662	bcgsc.ca	37	10	74968375	74968375	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_173348	exon6	c.543-2A>G	.	.	.	76	4	56	0	.	.
FAM169B	283777	ucsc.edu;bcgsc.ca	37	15	98995196	98995196	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_182562	exon5	c.T228C	p.P76P	.	.	38	5	50	0	.	.
FAM178A	55719	bcgsc.ca	37	10	102690773	102690773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001136123	exon9	c.T2374C	p.F792L	.	.	163	6	112	0	.	.
FAM178B	51252	bcgsc.ca	37	2	97637932	97637932	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM178B	NM_001122646	exon3	c.T270C	p.A90A	.	.	48	5	88	0	.	90
FAM194B	220081	bcgsc.ca	37	13	46164828	46164828	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM194B	NM_182542	exon4	c.C642A	p.P214P	.	.	47	4	38	0	.	68
FAM43A	131583	bcgsc.ca	37	3	194407655	194407655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM43A	NM_153690	exon1	c.G100T	p.A34S	.	.	10	3	20	0	.	90
FAM45A	404636	ucsc.edu	37	10	120883026	120883026	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAM45A	NM_207009	exon6	c.T639C	p.L213L	.	.	35	4	27	0	.	91
FANCA	2175	bcgsc.ca	37	16	89882320	89882320	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FANCA	NM_000135	exon2	c.C154A	p.R52R	.	.	72	4	95	0	.	1130
FAR1	84188	bcgsc.ca	37	11	13729615	13729615	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAR1	NM_032228	exon4	c.T534C	p.I178I	.	.	70	4	42	0	.	92
FAT2	2196	bcgsc.ca	37	5	150925539	150925539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAT2	NM_001447	exon9	c.A5149G	p.K1717E	.	.	75	5	72	0	.	96
FAT3	120114	bcgsc.ca	37	11	92533052	92533052	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FAT3	NM_001008781	exon9	c.A6873G	p.T2291T	.	.	56	4	52	0	.	73
FATE1	89885	bcgsc.ca	37	X	150884676	150884676	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FATE1	NM_033085	exon1	c.C85A	p.Q29K	.	.	40	5	47	0	.	131
FBL	2091	bcgsc.ca	37	19	40325399	40325399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FBL	NM_001436	exon8	c.A850G	p.K284E	.	.	60	4	104	0	.	91
FBXO7	25793	bcgsc.ca	37	22	32894378	32894378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FBXO7	NM_012179	exon9	c.C1430T	p.P477L	.	.	63	4	50	0	.	228
FCER1A	2205	bcgsc.ca	37	1	159275982	159275982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FCER1A	NM_002001	exon5	c.A536G	p.K179R	.	.	58	4	63	0	.	524
FCGR3B	2215	broad.mit.edu;bcgsc.ca	37	1	161600871	161600871	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FCGR3B	NM_001271035	exon1	c.T122G	p.L41R	.	.	82	8	103	0	.	22
FCHO2	115548	bcgsc.ca	37	5	72348323	72348323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FCHO2	NM_138782	exon13	c.C1162A	p.P388T	.	.	155	7	102	0	.	23
FEZ1	9638	bcgsc.ca	37	11	125351491	125351491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FEZ1	NM_005103	exon3	c.T350C	p.L117P	.	.	69	4	74	0	.	133
FGGY	55277	bcgsc.ca	37	1	59811942	59811942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FGGY	NM_001113411	exon4	c.A337G	p.M113V	.	.	75	4	69	0	.	69
FHL5	9457	bcgsc.ca	37	6	97053784	97053784	+	Missense_Mutation	SNP	G	G	T	rs201297556	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FHL5	NM_020482	exon5	c.G341T	p.R114L	.	.	82	5	62	0	G|0.999;A|0.001	92
FKBP10	60681	bcgsc.ca	37	17	39977907	39977907	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FKBP10	NM_021939	exon9	c.C1401T	p.A467A	.	.	45	5	85	0	.	227
FLCN	201163	bcgsc.ca	37	17	17125948	17125948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FLCN	NM_144997	exon7	c.C646T	p.P216S	.	.	51	4	52	1	.	1292
FLG	2312	bcgsc.ca	37	1	152284235	152284235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FLG	NM_002016	exon3	c.A3127G	p.S1043G	.	.	83	6	120	0	.	106
FMR1NB	158521	bcgsc.ca	37	X	147106407	147106407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FMR1NB	NM_152578	exon5	c.A655G	p.R219G	.	.	128	7	103	0	.	131
FOCAD	54914	bcgsc.ca	37	9	20765045	20765045	+	Silent	SNP	G	G	A	rs138365184		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_017794	exon9	c.G672A	p.L224L	.	.	135	5	91	0	G|1.000;A|0.000	.
FOXF2	2295	bcgsc.ca	37	6	1390685	1390685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FOXF2	NM_001452	exon1	c.C503T	p.P168L	.	.	18	4	48	0	.	226
FOXP1	27086	bcgsc.ca	37	3	71037217	71037217	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FOXP1	NM_001244815	exon9	c.C1080A	p.D360E	.	.	124	11	100	4	.	415
FPGS	2356	ucsc.edu	37	9	130569501	130569501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FPGS	NM_004957	exon6	c.T515C	p.V172A	.	.	48	5	58	0	.	90
FRAS1	80144	bcgsc.ca	37	4	79393339	79393339	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FRAS1	NM_025074	exon52	c.C7377T	p.T2459T	.	.	66	4	79	0	.	68
FREM1	158326	bcgsc.ca	37	9	14747361	14747361	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FREM1	NM_144966	exon34	c.A5910G	p.K1970K	.	.	145	5	116	1	.	138
FREM1	158326	ucsc.edu;bcgsc.ca	37	9	14851597	14851597	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FREM1	NM_144966	exon7	c.T837C	p.S279S	.	.	38	4	27	0	.	138
FSIP2	401024	bcgsc.ca	37	2	186671145	186671145	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FSIP2	NM_173651	exon17	c.T17379C	p.S5793S	.	.	143	6	81	0	.	90
FYB	2533	bcgsc.ca	37	5	39119132	39119132	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FYB	NM_001243093	exon16	c.G2275T	p.G759C	.	.	98	5	34	0	.	24
FZD10	11211	ucsc.edu	37	12	130649085	130649085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	FZD10	NM_007197	exon1	c.A1598G	p.Q533R	.	.	38	4	27	1	.	658
GABPB2	126626	bcgsc.ca	37	1	151079648	151079648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GABPB2	NM_144618	exon7	c.C872A	p.T291N	.	.	51	4	40	0	.	90
GABRR2	2570	bcgsc.ca	37	6	90009546	90009546	+	Missense_Mutation	SNP	C	C	T	rs148225612	byfrequency	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GABRR2	NM_002043	exon2	c.G152A	p.R51Q	.	.	70	4	85	0	C|0.999;T|0.001	68
GADL1	339896	bcgsc.ca	37	3	30885893	30885893	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GADL1	NM_207359	exon7	c.G717A	p.V239V	.	.	99	5	80	0	.	90
GAGE10	643832	ucsc.edu;bcgsc.ca	37	X	49173765	49173765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAGE10	NM_001098413	exon4	c.A326G	p.E109G	.	.	55	5	74	0	.	22
GAK	2580	ucsc.edu;bcgsc.ca	37	4	887731	887731	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAK	NM_005255	exon8	c.C808A	p.R270R	.	.	50	4	95	0	.	568
GALC	2581	bcgsc.ca	37	14	88442820	88442820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GALC	NM_000153	exon7	c.A634G	p.M212V	.	.	68	4	31	0	.	90
GALNT5	11227	bcgsc.ca	37	2	158152989	158152989	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GALNT5	NM_014568	exon5	c.T1961C	p.I654T	.	.	65	4	53	0	.	290
GAPVD1	26130	bcgsc.ca	37	9	128083718	128083718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAPVD1	NM_015635	exon8	c.A1609G	p.N537D	.	.	86	5	41	0	.	93
GAS2L2	246176	ucsc.edu;bcgsc.ca	37	17	34079489	34079489	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GAS2L2	NM_139285	exon1	c.C381A	p.I127I	.	.	39	4	44	0	.	227
GATAD2B	57459	bcgsc.ca	37	1	153785741	153785741	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GATAD2B	NM_020699	exon8	c.C1404A	p.A468A	.	.	57	5	56	0	.	90
GBAS	2631	bcgsc.ca	37	7	56065092	56065092	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GBAS	NM_001483	exon9	c.G746T	p.R249L	.	.	89	4	82	0	.	514
GBP1	2633	bcgsc.ca	37	1	89523746	89523746	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GBP1	NM_002053	exon6	c.A803G	p.D268G	.	.	167	7	133	1	.	92
GCNT2	2651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10586875	10586875	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GCNT2	NM_145655	exon1	c.G653T	p.G218V	.	.	88	16	91	0	.	92
GDF9	2661	ucsc.edu;bcgsc.ca	37	5	132197841	132197841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GDF9	NM_005260	exon2	c.G805A	p.D269N	.	.	43	4	36	0	.	227
GGCX	2677	bcgsc.ca	37	2	85781370	85781370	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GGCX	NM_000821	exon7	c.T785C	p.L262P	.	.	100	5	100	0	.	91
GIPC3	126326	ucsc.edu;bcgsc.ca	37	19	3586569	3586569	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GIPC3	NM_133261	exon2	c.T302C	p.F101S	.	.	33	4	56	0	.	135
GK5	256356	bcgsc.ca	37	3	141904824	141904824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GK5	NM_001039547	exon9	c.T763C	p.F255L	.	.	129	5	76	1	.	90
GLDC	2731	bcgsc.ca	37	9	6565390	6565390	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GLDC	NM_000170	exon16	c.A1890G	p.R630R	.	.	114	7	100	0	.	92
GLI3	2737	bcgsc.ca	37	7	42004335	42004335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GLI3	NM_000168	exon15	c.C4336A	p.Q1446K	.	.	51	4	83	0	.	1149
GLP2R	9340	ucsc.edu	37	17	9737142	9737142	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GLP2R	NM_004246	exon2	c.G208T	p.E70X	.	.	46	4	87	0	.	524
GLT8D2	83468	bcgsc.ca	37	12	104393194	104393194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GLT8D2	NM_031302	exon6	c.G383A	p.R128K	.	.	69	4	49	0	.	92
GLTP	51228	bcgsc.ca	37	12	110293554	110293554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GLTP	NM_016433	exon4	c.T317C	p.V106A	.	.	67	4	100	0	.	90
GMCL1P1	64396	bcgsc.ca	37	5	177613516	177613516	+	RNA	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	144	11	120	0	.	.
GMIP	51291	ucsc.edu	37	19	19746338	19746338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GMIP	NM_016573	exon15	c.C1446A	p.F482L	.	.	18	4	22	0	.	91
GNAS	2778	ucsc.edu;bcgsc.ca	37	20	57415853	57415853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GNAS	NM_016592	exon1	c.C692A	p.P231Q	.	.	22	4	26	0	.	4767
GON4L	54856	bcgsc.ca	37	1	155792250	155792250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GON4L	NM_001037533	exon4	c.G715A	p.E239K	.	.	83	4	81	0	.	93
GOT1L1	137362	bcgsc.ca	37	8	37794316	37794316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GOT1L1	NM_152413	exon6	c.A685G	p.R229G	.	.	46	4	62	0	.	23
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46847716	46847716	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR116	NM_015234	exon9	c.875delT	p.V292fs	.	.	90	15	82	0	.	91
GPR128	84873	bcgsc.ca	37	3	100356167	100356167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR128	NM_032787	exon6	c.A619G	p.T207A	.	.	53	4	30	0	.	94
GPR139	124274	bcgsc.ca	37	16	20043390	20043390	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR139	NM_001002911	exon2	c.C729A	p.P243P	.	.	72	6	64	0	.	92
GPR155	151556	bcgsc.ca	37	2	175346684	175346684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR155	NM_001267051	exon2	c.A1G	p.M1V	.	.	71	5	47	0	.	91
GPR161	23432	bcgsc.ca	37	1	168065796	168065796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR161	NM_001267609	exon4	c.T1109A	p.V370E	.	.	73	4	85	0	.	90
GPR19	2842	bcgsc.ca	37	12	12814228	12814228	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR19	NM_006143	exon4	c.C1155A	p.T385T	.	.	160	6	132	0	.	91
GPR21	2844	bcgsc.ca	37	9	125797475	125797475	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR21	NM_005294	exon2	c.C630A	p.T210T	.	.	63	5	78	0	.	91
GPR98	84059	bcgsc.ca	37	5	89941789	89941789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR98	NM_032119	exon16	c.C2903A	p.P968Q	.	.	78	4	52	0	.	103
GPR98	84059	bcgsc.ca	37	5	89990473	89990473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GPR98	NM_032119	exon33	c.G7900T	p.G2634C	.	.	125	5	80	0	.	103
GRIA1	2890	bcgsc.ca	37	5	153054181	153054181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIA1	NM_001258021	exon6	c.A851G	p.D284G	.	.	73	5	75	0	.	96
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105623945	105623945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIA4	NM_001077244	exon4	c.G486T	p.R162S	.	.	59	10	58	0	.	230
GRIN1	2902	bcgsc.ca	37	9	140056505	140056505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIN1	NM_001185091	exon12	c.T1660C	p.F554L	.	.	35	4	46	0	.	187
GRIN2B	2904	bcgsc.ca	37	12	13769486	13769486	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRIN2B	NM_000834	exon5	c.C1231T	p.L411L	.	.	77	4	64	0	.	231
GRTP1	79774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	113980034	113980034	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRTP1	NM_024719	exon7	c.A863G	p.D288G	.	.	84	9	145	0	.	90
GRXCR1	389207	bcgsc.ca	37	4	43032413	43032413	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GRXCR1	NM_001080476	exon4	c.A729G	p.G243G	.	.	68	4	76	0	.	23
GSR	2936	bcgsc.ca	37	8	30546776	30546776	+	Missense_Mutation	SNP	C	C	A	rs201798705	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GSR	NM_000637	exon9	c.G943T	p.G315C	.	.	59	4	69	0	C|0.999;T|0.000	94
GSS	2937	bcgsc.ca	37	20	33523414	33523414	+	Missense_Mutation	SNP	G	G	A	rs121909308		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GSS	NM_000178	exon9	c.C799T	p.R267W	.	.	58	4	44	0	.	93
GSTT1	2952	bcgsc.ca	37	22	24376995	24376995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GSTT1	NM_000853	exon4	c.A355G	p.M119V	.	.	39	4	34	0	.	91
GTDC1	79712	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144903283	144903283	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GTDC1	NM_001006636	exon5	c.T203A	p.L68H	.	.	61	7	33	0	.	91
GTF3C1	2975	bcgsc.ca	37	16	27512604	27512604	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GTF3C1	NM_001520	exon12	c.A1969G	p.K657E	.	.	55	5	36	0	.	94
GTF3C3	9330	bcgsc.ca	37	2	197636559	197636559	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GTF3C3	NM_012086	exon15	c.T2173C	p.L725L	.	.	183	6	136	0	.	97
GUCY1A3	2982	bcgsc.ca	37	4	156634594	156634594	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GUCY1A3	NM_001130687	exon7	c.C1431A	p.F477L	.	.	145	6	136	0	.	93
GUK1	2987	bcgsc.ca	37	1	228333733	228333733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GUK1	NM_001242840	exon3	c.C182T	p.T61M	.	.	105	5	139	0	.	115
GXYLT1	283464	bcgsc.ca	37	12	42503483	42503483	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GXYLT1	NM_173601	exon4	c.G497T	p.W166L	.	.	117	6	99	0	.	22
GYG2	8908	bcgsc.ca	37	X	2761290	2761290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	GYG2	NM_003918	exon4	c.A137G	p.D46G	.	.	68	4	59	0	.	132
GYPE	2996	bcgsc.ca	37	4	144797919	144797919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_198682	exon3	c.T226C	p.C76R	.	.	299	8	239	0	.	.
H6PD	9563	bcgsc.ca	37	1	9324522	9324522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	H6PD	NM_004285	exon5	c.A1970G	p.H657R	.	.	69	4	86	0	.	90
HACL1	26061	bcgsc.ca	37	3	15621446	15621446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HACL1	NM_012260	exon9	c.T774G	p.H258Q	.	.	50	4	31	0	.	90
HAUS5	23354	bcgsc.ca	37	19	36110535	36110535	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HAUS5	NM_015302	exon15	c.A1281G	p.R427R	.	.	63	4	79	0	.	68
HBE1	3046	bcgsc.ca	37	11	5290732	5290732	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HBE1	NM_005330	exon2	c.G267T	p.L89L	.	.	108	4	79	0	.	90
HEATR2	54919	bcgsc.ca	37	7	819737	819737	+	Missense_Mutation	SNP	T	T	C	rs113906181		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HEATR2	NM_017802	exon12	c.T2387C	p.V796A	.	.	65	4	93	1	T|0.500;C|0.500	69
HEATR6	63897	bcgsc.ca	37	17	58133533	58133533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HEATR6	NM_022070	exon13	c.G2145T	p.E715D	.	.	59	4	40	1	.	227
HECW1	23072	bcgsc.ca	37	7	43483890	43483890	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HECW1	NM_015052	exon11	c.G1119A	p.M373I	.	.	62	4	65	0	.	669
HEPH	9843	ucsc.edu	37	X	65393616	65393616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HEPH	NM_138737	exon4	c.A760G	p.I254V	.	.	42	4	15	0	.	135
HERC6	55008	bcgsc.ca	37	4	89363518	89363518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HERC6	NM_017912	exon23	c.C2975A	p.P992H	.	.	214	7	176	0	.	658
HEXA	3073	bcgsc.ca	37	15	72648884	72648884	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HEXA	NM_000520	exon2	c.T328C	p.L110L	.	.	62	4	55	0	.	94
HIC2	23119	ucsc.edu;bcgsc.ca	37	22	21800865	21800865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIC2	NM_015094	exon3	c.T1681C	p.F561L	.	.	35	4	54	0	.	703
HIPK1	204851	ucsc.edu;bcgsc.ca	37	1	114515662	114515662	+	Missense_Mutation	SNP	C	C	A	rs17853522	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIPK1	NM_198268	exon16	c.C3161A	p.A1054E	.	.	43	4	44	0	C|0.999;T|0.001	361
HIST1H2AB	8335	bcgsc.ca	37	6	26033790	26033790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIST1H2AB	NM_003513	exon1	c.G7T	p.G3C	.	.	66	4	70	0	.	68
HIST1H2AD	3013	bcgsc.ca	37	6	26199086	26199086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIST1H2AD	NM_021065	exon1	c.G386A	p.G129D	.	.	124	6	149	0	.	90
HIVEP3	59269	bcgsc.ca	37	1	42047609	42047609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HIVEP3	NM_024503	exon4	c.C2860A	p.H954N	.	.	69	4	53	1	.	157
HK1	3098	ucsc.edu	37	10	71154793	71154793	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HK1	NM_033498	exon19	c.A2319T	p.R773R	.	.	29	3	33	0	.	252
HLA-DPB1	3115	bcgsc.ca	37	6	33053619	33053619	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HLA-DPB1	NM_002121	exon4	c.T710C	p.L237P	.	.	54	4	37	0	.	515
HMCN1	83872	bcgsc.ca	37	1	185956598	185956598	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HMCN1	NM_031935	exon20	c.C2970A	p.L990L	.	.	50	4	40	0	.	113
HMGA1	3159	ucsc.edu	37	6	34210531	34210531	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HMGA1	NM_145901	exon3	c.C178A	p.R60R	.	.	49	4	58	1	.	650
HNF1A	6927	bcgsc.ca	37	12	121432190	121432190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HNF1A	NM_000545	exon4	c.T937C	p.S313P	.	.	16	4	19	0	.	1745
HNRNPK	3190	bcgsc.ca	37	9	86592604	86592604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HNRNPK	NM_031262	exon4	c.G156T	p.K52N	.	.	67	4	48	0	.	227
HNRNPUL1	11100	bcgsc.ca	37	19	41774136	41774136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HNRNPUL1	NM_007040	exon2	c.G304T	p.D102Y	.	.	44	4	36	0	.	69
HPS1	3257	bcgsc.ca	37	10	100195417	100195417	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HPS1	NM_000195	exon4	c.G230A	p.G77D	.	.	75	5	84	0	.	91
HSD17B3	3293	bcgsc.ca	37	9	99003174	99003174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HSD17B3	NM_000197	exon10	c.G688T	p.A230S	.	.	58	5	46	0	.	90
HTR7	3363	bcgsc.ca	37	10	92509184	92509184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HTR7	NM_019860	exon2	c.A707G	p.D236G	.	.	66	4	53	0	.	91
HTT	3064	bcgsc.ca	37	4	3237110	3237110	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	HTT	NM_002111	exon62	c.A8556G	p.S2852S	.	.	57	4	92	0	.	281
IARS	3376	bcgsc.ca	37	9	95014109	95014109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IARS	NM_013417	exon22	c.T2288C	p.L763P	.	.	107	5	81	0	.	92
ICAM5	7087	bcgsc.ca	37	19	10402359	10402359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ICAM5	NM_003259	exon3	c.G547T	p.A183S	.	.	22	4	37	0	.	153
IFT20	90410	bcgsc.ca	37	17	26658967	26658967	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IFT20	NM_001267774	exon3	c.A123G	p.E41E	.	.	74	4	57	0	.	90
IGBP1	3476	bcgsc.ca	37	X	69370099	69370099	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IGBP1	NM_001551	exon6	c.G798T	p.T266T	.	.	111	5	82	0	.	227
IGJ	3512	bcgsc.ca	37	4	71522952	71522952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IGJ	NM_144646	exon3	c.G245T	p.R82I	.	.	77	4	44	0	.	90
IGSF22	283284	bcgsc.ca	37	11	18743121	18743121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IGSF22	NM_173588	exon4	c.G339T	p.K113N	.	.	91	5	111	0	.	140
IL20RA	53832	bcgsc.ca	37	6	137332535	137332535	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IL20RA	NM_014432	exon3	c.C279A	p.T93T	.	.	85	7	58	0	.	94
IL5RA	3568	bcgsc.ca	37	3	3134004	3134004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IL5RA	NM_001243099	exon9	c.G898T	p.D300Y	.	.	70	4	37	0	.	91
IMMT	10989	bcgsc.ca	37	2	86371717	86371717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMMT	NM_006839	exon15	c.A1951G	p.T651A	.	.	66	5	64	0	.	91
IMPDH2	3615	ucsc.edu;bcgsc.ca	37	3	49066740	49066740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPDH2	NM_000884	exon1	c.A44G	p.D15G	.	.	21	4	25	0	.	227
IMPG1	3617	ucsc.edu;bcgsc.ca	37	6	76660465	76660465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IMPG1	NM_001563	exon13	c.C1638A	p.F546L	.	.	35	4	26	0	.	93
INPP5A	3632	bcgsc.ca	37	10	134421447	134421447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INPP5A	NM_005539	exon2	c.G104T	p.R35L	.	.	24	4	26	0	.	229
INSL6	11172	bcgsc.ca	37	9	5164178	5164178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INSL6	NM_007179	exon2	c.G377T	p.G126V	.	.	121	6	71	0	.	90
INSR	3643	ucsc.edu;bcgsc.ca	37	19	7117231	7117231	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INSR	NM_000208	exon22	c.C3985A	p.L1329M	.	.	40	4	49	1	.	1381
INTS2	57508	bcgsc.ca	37	17	59949776	59949776	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INTS2	NM_020748	exon20	c.T2652C	p.Y884Y	.	.	66	4	72	0	.	206
INTS2	57508	bcgsc.ca	37	17	59952341	59952341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INTS2	NM_020748	exon19	c.A2539G	p.K847E	.	.	184	7	109	0	.	206
INVS	27130	bcgsc.ca	37	9	103014689	103014689	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	INVS	NM_183245	exon9	c.A1203G	p.G401G	.	.	75	4	55	0	.	92
IQCA1	79781	bcgsc.ca	37	2	237402471	237402471	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IQCA1	NM_001270585	exon3	c.A417G	p.K139K	.	.	108	6	99	0	.	23
IQCH	64799	bcgsc.ca	37	15	67636432	67636432	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	IQCH	NM_001031715	exon6	c.T540C	p.I180I	.	.	96	5	67	0	.	94
IST1	9798	bcgsc.ca	37	16	71950429	71950429	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001270976	exon4	c.A192G	p.R64R	.	.	173	6	128	1	.	.
ITGA8	8516	ucsc.edu;bcgsc.ca	37	10	15760772	15760772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGA8	NM_003638	exon2	c.C336A	p.D112E	.	.	42	4	47	0	.	230
ITGAV	3685	bcgsc.ca	37	2	187531459	187531459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGAV	NM_002210	exon22	c.A2195G	p.H732R	.	.	79	4	50	0	.	653
ITGB1BP1	9270	bcgsc.ca	37	2	9548305	9548305	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGB1BP1	NM_004763	exon5	c.G318T	p.P106P	.	.	193	6	132	1	.	130
ITGB5	3693	ucsc.edu	37	3	124567156	124567156	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGB5	NM_002213	exon4	c.G611T	p.G204V	.	.	45	4	47	0	.	227
ITGB8	3696	ucsc.edu	37	7	20403263	20403263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITGB8	NM_002214	exon2	c.A131G	p.D44G	.	.	40	4	24	0	.	227
ITIH3	3699	ucsc.edu;bcgsc.ca	37	3	52828855	52828855	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITIH3	NM_002217	exon1	c.T36C	p.A12A	.	.	44	4	37	1	.	93
ITLN2	142683	broad.mit.edu	37	1	160919847	160919847	+	Missense_Mutation	SNP	G	G	T	rs201391588	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ITLN2	NM_080878	exon6	c.C710A	p.P237Q	.	.	63	6	55	0	.	91
JMJD1C	221037	bcgsc.ca	37	10	64958350	64958350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	JMJD1C	NM_032776	exon12	c.T5414C	p.I1805T	.	.	101	5	53	0	.	275
KALRN	8997	bcgsc.ca	37	3	124066041	124066041	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KALRN	NM_003947	exon10	c.G1693A	p.G565R	.	.	65	4	46	0	.	738
KANSL2	54934	bcgsc.ca	37	12	49047883	49047883	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_017822	exon10	c.T1423C	p.S475P	.	.	63	4	69	0	.	.
KAT2A	2648	bcgsc.ca	37	17	40272362	40272362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KAT2A	NM_021078	exon3	c.G490A	p.V164M	.	.	87	5	106	0	.	523
KAT2B	8850	bcgsc.ca	37	3	20153264	20153264	+	Missense_Mutation	SNP	T	T	C	rs138650015		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KAT2B	NM_003884	exon6	c.T1028C	p.L343P	.	.	95	4	81	0	T|1.000;C|0.000	228
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu	37	3	127642837	127642838	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KBTBD12	NM_207335	exon1	c.933_934insTCA	p.I311delinsIS	.	.	176	24	127	0	.	23
KCNA3	3738	bcgsc.ca	37	1	111216379	111216379	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNA3	NM_002232	exon1	c.G1053A	p.Q351Q	.	.	68	4	58	0	.	95
KCNA6	3742	bcgsc.ca	37	12	4919964	4919964	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNA6	NM_002235	exon1	c.A757T	p.T253S	.	.	105	7	92	1	.	93
KCNAB1	7881	bcgsc.ca	37	3	156234135	156234135	+	Silent	SNP	T	T	C	rs151060532	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNAB1	NM_172160	exon11	c.T942C	p.S314S	.	.	81	4	46	0	T|0.999;G|0.000	94
KCNJ15	3772	broad.mit.edu;bcgsc.ca	37	21	39671899	39671899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNJ15	NM_002243	exon4	c.T716A	p.I239N	.	.	16	3	18	0	.	157
KCNT2	343450	bcgsc.ca	37	1	196288656	196288656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KCNT2	NM_198503	exon20	c.G2306A	p.C769Y	.	.	64	4	36	0	.	159
KDM2A	22992	bcgsc.ca	37	11	66985253	66985253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM2A	NM_012308	exon9	c.T739C	p.W247R	.	.	84	6	84	0	.	661
KDM5A	5927	bcgsc.ca	37	12	459911	459911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5A	NM_001042603	exon10	c.G1184T	p.W395L	.	.	111	6	110	0	.	227
KDM5A	5927	ucsc.edu	37	12	404927	404927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5A	NM_001042603	exon26	c.A4267G	p.S1423G	.	.	48	4	37	0	.	227
KDM5A	5927	ucsc.edu	37	12	404953	404953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5A	NM_001042603	exon26	c.G4241T	p.S1414I	.	.	44	4	31	0	.	227
KDM5D	8284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	Y	21897301	21897301	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KDM5D	NM_001146705	exon8	c.G870A	p.L290L	.	.	74	21	39	0	.	560
KEL	3792	ucsc.edu	37	7	142638362	142638362	+	Missense_Mutation	SNP	A	A	G	rs8176048	byfrequency	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KEL	NM_000420	exon19	c.T2176C	p.S726P	.	.	56	7	44	1	T|0.507;G|0.003;C|0.003;A|0.487	93
KHDRBS3	10656	bcgsc.ca	37	8	136533522	136533522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KHDRBS3	NM_006558	exon2	c.A131G	p.K44R	.	.	123	5	86	0	.	92
KIAA0100	9703	bcgsc.ca	37	17	26966602	26966602	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA0100	NM_014680	exon10	c.T1074C	p.A358A	.	.	84	5	83	0	.	93
KIAA0226L	80183	bcgsc.ca	37	13	46923437	46923437	+	Missense_Mutation	SNP	A	A	G	rs143780728		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_025113	exon12	c.T1615C	p.C539R	.	.	51	4	40	0	A|1.000;G|0.000	.
KIAA0232	9778	bcgsc.ca	37	4	6863138	6863138	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA0232	NM_014743	exon7	c.A1029G	p.E343E	.	.	119	5	95	0	.	92
KIAA0368	23392	bcgsc.ca	37	9	114155145	114155145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA0368	NM_001080398	exon29	c.G3529T	p.A1177S	.	.	98	5	79	0	.	68
KIAA1009	22832	bcgsc.ca	37	6	84930796	84930796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1009	NM_014895	exon3	c.G151A	p.E51K	.	.	143	6	98	0	.	91
KIAA1199	57214	bcgsc.ca	37	15	81212553	81212553	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1199	NM_018689	exon14	c.T1916C	p.L639P	.	.	61	4	58	1	.	93
KIAA1244	57221	bcgsc.ca	37	6	138628409	138628409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1244	NM_020340	exon23	c.A3848T	p.E1283V	.	.	46	4	47	0	.	228
KIAA1377	57562	bcgsc.ca	37	11	101833201	101833201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1377	NM_020802	exon6	c.A1435G	p.S479G	.	.	67	4	42	0	.	136
KIAA1683	80726	bcgsc.ca	37	19	18376782	18376782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1683	NM_001145304	exon3	c.C1568T	p.P523L	.	.	65	4	83	0	.	92
KIAA1704	55425	bcgsc.ca	37	13	45578551	45578551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1704	NM_018559	exon2	c.A200G	p.D67G	.	.	54	4	51	0	.	92
KIAA1804	0	broad.mit.edu;bcgsc.ca	37	1	233512249	233512249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1804	NM_032435	exon8	c.G1900T	p.A634S	.	.	100	10	90	1	.	523
KIAA1841	84542	bcgsc.ca	37	2	61331104	61331104	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA1841	NM_032506	exon13	c.T1482C	p.I494I	.	.	123	5	97	0	.	90
KIAA2018	205717	bcgsc.ca	37	3	113379998	113379998	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA2018	NM_001009899	exon7	c.A531G	p.Q177Q	.	.	85	4	60	0	.	93
KIAA2022	340533	bcgsc.ca	37	X	73963421	73963421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIAA2022	NM_001008537	exon3	c.A971G	p.K324R	.	.	57	4	54	0	.	183
KIF11	3832	bcgsc.ca	37	10	94390034	94390034	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF11	NM_004523	exon12	c.A1407G	p.Q469Q	.	.	90	4	68	0	.	227
KIF14	9928	bcgsc.ca	37	1	200575895	200575895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF14	NM_014875	exon6	c.C1586T	p.P529L	.	.	71	5	51	0	.	140
KIF16B	55614	bcgsc.ca	37	20	16409643	16409643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF16B	NM_001199865	exon14	c.C1429A	p.Q477K	.	.	94	5	56	0	.	291
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10381913	10381913	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF1B	NM_015074	exon22	c.A2218C	p.K740Q	.	.	80	19	63	0	.	93
KIF20A	10112	bcgsc.ca	37	5	137522912	137522912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF20A	NM_005733	exon19	c.A2483G	p.K828R	.	.	62	4	56	0	.	90
KIF21B	23046	broad.mit.edu;bcgsc.ca	37	1	200959272	200959272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF21B	NM_017596	exon20	c.G3024A	p.E1008E	.	.	100	10	128	1	.	96
KIF24	347240	bcgsc.ca	37	9	34257829	34257829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF24	NM_194313	exon11	c.T1776A	p.F592L	.	.	61	4	76	0	.	22
KIF4A	24137	bcgsc.ca	37	X	69639922	69639922	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIF4A	NM_012310	exon31	c.A3506G	p.E1169G	.	.	50	4	43	0	.	134
KIR3DL1	3811	broad.mit.edu	37	19	55341717	55341717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIR3DL1	NM_013289	exon9	c.T1322C	p.V441A	.	.	78	7	83	1	.	95
KIRREL	55243	bcgsc.ca	37	1	158063179	158063179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KIRREL	NM_018240	exon12	c.C1522A	p.L508M	.	.	46	5	45	0	.	91
KLHDC1	122773	bcgsc.ca	37	14	50196214	50196214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KLHDC1	NM_172193	exon8	c.A658G	p.R220G	.	.	80	5	75	0	.	91
KLHL18	23276	ucsc.edu;bcgsc.ca	37	3	47376272	47376272	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KLHL18	NM_025010	exon6	c.T861C	p.A287A	.	.	40	4	48	0	.	90
KLHL23	151230	bcgsc.ca	37	2	170592514	170592514	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KLHL23	NM_144711	exon2	c.G990T	p.T330T	.	.	58	4	77	0	.	90
KNTC1	9735	bcgsc.ca	37	12	123019256	123019256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KNTC1	NM_014708	exon3	c.T175C	p.F59L	.	.	138	6	140	2	.	543
KPNA2	3838	bcgsc.ca	37	17	66039299	66039299	+	Missense_Mutation	SNP	G	G	T	rs11545991	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KPNA2	NM_002266	exon7	c.G750T	p.E250D	.	.	67	4	60	0	.	560
KRIT1	889	bcgsc.ca	37	7	91865754	91865754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KRIT1	NM_194456	exon8	c.C458T	p.T153I	.	.	60	4	35	0	.	132
KRT14	3861	bcgsc.ca	37	17	39740080	39740080	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KRT14	NM_000526	exon4	c.A859G	p.M287V	.	.	142	9	132	1	.	91
KRT26	353288	bcgsc.ca	37	17	38928244	38928244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KRT26	NM_181539	exon1	c.G122T	p.S41I	.	.	68	4	71	0	.	90
KRT85	3891	ucsc.edu	37	12	52754830	52754830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	KRT85	NM_002283	exon9	c.G1331A	p.C444Y	.	.	25	4	43	0	.	91
L3MBTL2	83746	bcgsc.ca	37	22	41621013	41621013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	L3MBTL2	NM_031488	exon11	c.A1294G	p.M432V	.	.	83	6	116	0	.	92
LAMA1	284217	bcgsc.ca	37	18	7049168	7049168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMA1	NM_005559	exon5	c.T677C	p.L226P	.	.	104	6	60	0	.	149
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6958590	6958590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMA1	NM_005559	exon55	c.C7850T	p.T2617M	.	.	98	11	116	0	.	149
LAMA2	3908	broad.mit.edu	37	6	129670510	129670510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMA2	NM_000426	exon31	c.G4504A	p.E1502K	.	.	44	4	34	1	.	162
LAMB1	3912	bcgsc.ca	37	7	107569641	107569641	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LAMB1	NM_002291	exon31	c.A4755G	p.A1585A	.	.	259	7	201	0	.	97
LATS1	9113	bcgsc.ca	37	6	150022977	150022977	+	Silent	SNP	G	G	T	rs55945045	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LATS1	NM_001270519	exon2	c.C286A	p.R96R	.	.	146	5	114	0	G|0.997;A|0.003	992
LEF1	51176	bcgsc.ca	37	4	109088748	109088748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LEF1	NM_001130714	exon1	c.A176G	p.N59S	.	.	65	4	113	1	.	721
LIG4	3981	bcgsc.ca	37	13	108861757	108861757	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LIG4	NM_206937	exon3	c.T1860C	p.D620D	.	.	160	6	126	0	.	659
LIN9	286826	bcgsc.ca	37	1	226426767	226426767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LIN9	NM_173083	exon12	c.T1198C	p.F400L	.	.	87	4	75	0	.	90
LMO7	4008	bcgsc.ca	37	13	76423410	76423410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LMO7	NM_015842	exon24	c.T3647C	p.L1216P	.	.	81	4	63	0	.	586
LMTK2	22853	ucsc.edu;bcgsc.ca	37	7	97823273	97823273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LMTK2	NM_014916	exon11	c.T3496C	p.S1166P	.	.	29	4	30	0	.	1381
LOC100132707	0	bcgsc.ca	37	7	154720692	154720692	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	91	5	53	0	.	.
LOC146880	0	bcgsc.ca	37	17	62758503	62758503	+	RNA	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	79	4	103	0	.	.
LOC388948	0	bcgsc.ca	37	2	47045336	47045336	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	60	4	57	0	.	.
LONRF1	91694	bcgsc.ca	37	8	12586550	12586550	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LONRF1	NM_152271	exon10	c.T1870C	p.L624L	.	.	103	5	61	0	.	91
LOXL2	4017	bcgsc.ca	37	8	23179784	23179784	+	Silent	SNP	G	G	A	rs201295841		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LOXL2	NM_002318	exon7	c.C1161T	p.P387P	.	.	63	4	89	0	G|0.999;A|0.000	272
LPCAT2	54947	bcgsc.ca	37	16	55559510	55559510	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LPCAT2	NM_017839	exon2	c.A262G	p.T88A	.	.	135	5	102	1	.	90
LRAT	9227	ucsc.edu	37	4	155665968	155665968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRAT	NM_004744	exon2	c.T490C	p.F164L	.	.	42	4	42	0	.	90
LRBA	987	bcgsc.ca	37	4	151849693	151849693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRBA	NM_006726	exon4	c.A524G	p.K175R	.	.	143	6	93	0	.	157
LRIG2	9860	bcgsc.ca	37	1	113650237	113650237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRIG2	NM_014813	exon12	c.G1335T	p.L445F	.	.	102	5	48	0	.	229
LRIT3	345193	bcgsc.ca	37	4	110791848	110791848	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRIT3	NM_198506	exon4	c.G1943T	p.R648M	.	.	120	5	92	0	.	90
LRP1	4035	ucsc.edu;bcgsc.ca	37	12	57588784	57588784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRP1	NM_002332	exon51	c.G8208T	p.E2736D	.	.	44	4	55	0	.	596
LRP1B	53353	bcgsc.ca	37	2	141264391	141264391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRP1B	NM_018557	exon53	c.A8495G	p.D2832G	.	.	136	6	107	0	.	311
LRRC31	79782	ucsc.edu;bcgsc.ca	37	3	169565938	169565938	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC31	NM_024727	exon8	c.C1297C	p.L433L	.	.	37	4	30	0	.	93
LRRC36	55282	bcgsc.ca	37	16	67418908	67418908	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC36	NM_018296	exon14	c.G2181A	p.L727L	.	.	81	4	63	0	.	90
LRRC37A5P	652972	bcgsc.ca	37	9	114371349	114371349	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	90	4	85	0	.	.
LRRC38	126755	ucsc.edu	37	1	13839685	13839685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001010847	exon1	c.T404C	p.L135P	.	.	27	4	72	1	.	.
LRRC39	127495	bcgsc.ca	37	1	100621785	100621785	+	Missense_Mutation	SNP	A	A	G	rs140341572		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC39	NM_144620	exon7	c.T602C	p.L201P	.	.	53	4	36	0	A|1.000;G|0.000	93
LRRC40	55631	bcgsc.ca	37	1	70621401	70621401	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC40	NM_017768	exon11	c.T1299C	p.S433S	.	.	173	6	73	0	.	91
LRRC42	115353	bcgsc.ca	37	1	54428071	54428071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRC42	NM_052940	exon6	c.T916C	p.W306R	.	.	71	4	63	0	.	90
LRRCC1	85444	bcgsc.ca	37	8	86027767	86027767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRCC1	NM_033402	exon6	c.A878G	p.N293S	.	.	79	4	33	0	.	90
LRRFIP2	9209	bcgsc.ca	37	3	37144463	37144463	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LRRFIP2	NM_006309	exon16	c.A825G	p.G275G	.	.	95	7	72	0	.	91
LSG1	55341	bcgsc.ca	37	3	194373589	194373589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LSG1	NM_018385	exon8	c.A1042G	p.S348G	.	.	96	6	99	2	.	90
LY9	4063	bcgsc.ca	37	1	160788029	160788029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LY9	NM_001261456	exon6	c.T1364C	p.L455P	.	.	263	7	249	1	.	91
LYPD6B	130576	bcgsc.ca	37	2	150069629	150069629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_177964	exon6	c.A452G	p.E151G	.	.	56	5	46	0	.	.
LYST	1130	bcgsc.ca	37	1	235971853	235971853	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LYST	NM_000081	exon5	c.T2265C	p.T755T	.	.	142	7	81	0	.	143
LYZL4	131375	bcgsc.ca	37	3	42448654	42448654	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	LYZL4	NM_144634	exon2	c.A90G	p.K30K	.	.	69	4	80	0	.	90
MACROD2	140733	bcgsc.ca	37	20	15210607	15210607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MACROD2	NM_080676	exon6	c.C440A	p.P147Q	.	.	86	5	79	0	.	22
MADD	8567	bcgsc.ca	37	11	47300596	47300596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MADD	NM_130474	exon7	c.C1256A	p.P419Q	.	.	89	5	83	1	.	682
MAGEA10-MAGEA5	0	broad.mit.edu	37	X	151283740	151283740	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001204811	exon4	c.A273G	p.E91E	.	.	73	6	82	3	.	.
MAGI3	260425	bcgsc.ca	37	1	114193827	114193827	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAGI3	NM_152900	exon14	c.A2439G	p.G813G	.	.	61	4	50	0	.	524
MAK16	84549	bcgsc.ca	37	8	33346096	33346096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAK16	NM_032509	exon3	c.T124C	p.S42P	.	.	75	4	69	0	.	69
MAK	4117	bcgsc.ca	37	6	10802157	10802157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAK	NM_005906	exon8	c.T799C	p.W267R	.	.	88	5	85	0	.	335
MALT1	10892	bcgsc.ca	37	18	56414929	56414929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MALT1	NM_006785	exon17	c.G2330T	p.C777F	.	.	82	5	58	0	.	660
MAN2A2	4122	bcgsc.ca	37	15	91448828	91448828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAN2A2	NM_006122	exon3	c.A410G	p.E137G	.	.	70	6	100	0	.	136
MANSC4	100287284	bcgsc.ca	37	12	27916257	27916257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001146221	exon3	c.G437T	p.W146L	.	.	244	7	245	0	.	.
MAP1B	4131	bcgsc.ca	37	5	71490752	71490752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP1B	NM_005909	exon5	c.C1570A	p.Q524K	.	.	51	4	58	0	.	155
MAP2	4133	bcgsc.ca	37	2	210557595	210557595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP2	NM_002374	exon7	c.T701C	p.L234P	.	.	66	4	49	0	.	591
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	11998923	11998923	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	MAP2K4,NS,carcinoma,0	MAP2K4	NM_003010	exon4	c.425delA	p.Q142fs	.	.	82	13	79	0	.	3134
MAP3K10	4294	bcgsc.ca	37	19	40698100	40698100	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K10	NM_002446	exon1	c.C162A	p.G54G	.	.	23	4	65	0	.	981
MAP3K5	4217	bcgsc.ca	37	6	136901448	136901448	+	Missense_Mutation	SNP	G	G	T	rs144900914	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K5	NM_005923	exon25	c.C3508A	p.L1170M	.	.	70	4	48	0	G|1.000;A|0.000	982
MAP3K5	4217	bcgsc.ca	37	6	136944004	136944004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K5	NM_005923	exon15	c.T2132C	p.I711T	.	.	85	4	56	0	.	982
MAP3K5	4217	bcgsc.ca	37	6	137017092	137017092	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K5	NM_005923	exon6	c.A1079G	p.N360S	.	.	74	4	50	0	.	982
MAP3K8	1326	bcgsc.ca	37	10	30728020	30728020	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K8	NM_001244134	exon2	c.A153G	p.Q51Q	.	.	85	5	65	0	.	981
MAP3K8	1326	bcgsc.ca	37	10	30739384	30739384	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP3K8	NM_001244134	exon4	c.A702G	p.T234T	.	.	53	4	68	0	.	981
MAP4K5	11183	bcgsc.ca	37	14	50904625	50904625	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAP4K5	NM_006575	exon24	c.C1810A	p.R604R	.	.	120	5	69	0	.	546
MAST2	23139	bcgsc.ca	37	1	46491461	46491461	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAST2	NM_015112	exon16	c.C1893A	p.I631I	.	.	108	5	79	0	.	581
MAST2	23139	ucsc.edu;bcgsc.ca	37	1	46472011	46472011	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MAST2	NM_015112	exon8	c.A846G	p.V282V	.	.	47	4	45	0	.	581
MBOAT1	154141	bcgsc.ca	37	6	20144519	20144519	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MBOAT1	NM_001080480	exon4	c.T351C	p.Y117Y	.	.	60	4	49	0	.	68
MBTD1	54799	bcgsc.ca	37	17	49297768	49297768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MBTD1	NM_017643	exon4	c.A211G	p.K71E	.	.	70	4	54	0	.	92
MCC	4163	bcgsc.ca	37	5	112720862	112720862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCC	NM_001085377	exon2	c.T218C	p.V73A	.	.	134	6	80	0	.	69
MCF2	4168	bcgsc.ca	37	X	138697171	138697171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2	NM_001171876	exon13	c.G1412T	p.R471L	.	.	110	5	94	0	.	227
MCF2	4168	bcgsc.ca	37	X	138701822	138701822	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2	NM_001171876	exon10	c.T911C	p.L304P	.	.	236	7	131	0	.	227
MCF2L2	23101	bcgsc.ca	37	3	182923683	182923683	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2L2	NM_015078	exon25	c.A2865G	p.E955E	.	.	181	7	122	0	.	293
MCF2L2	23101	ucsc.edu;bcgsc.ca	37	3	183145765	183145765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2L2	NM_015078	exon1	c.A1G	p.M1V	.	.	48	5	43	0	.	293
MCF2L	23263	bcgsc.ca	37	13	113731398	113731398	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCF2L	NM_001112732	exon13	c.A1533G	p.A511A	.	.	75	4	119	0	.	228
MCM3AP	8888	bcgsc.ca	37	21	47664971	47664971	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCM3AP	NM_003906	exon23	c.T4788C	p.R1596R	.	.	67	4	46	0	.	291
MCM3AP	8888	bcgsc.ca	37	21	47666263	47666263	+	Silent	SNP	G	G	T	rs146201709	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCM3AP	NM_003906	exon22	c.C4605A	p.T1535T	.	.	68	4	83	0	G|1.000;A|0.000	291
MCM3AP	8888	bcgsc.ca	37	21	47680756	47680756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MCM3AP	NM_003906	exon15	c.G3532A	p.E1178K	.	.	68	4	62	0	.	291
MCMDC2	157777	bcgsc.ca	37	8	67796058	67796058	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_173518	exon9	c.T902C	p.F301S	.	.	63	4	37	0	.	.
MDFIC	29969	bcgsc.ca	37	7	114582445	114582445	+	Silent	SNP	C	C	A	rs145096402	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MDFIC	NM_199072	exon3	c.C537A	p.L179L	.	.	200	6	103	0	C|1.000;T|0.000	91
MED12	9968	bcgsc.ca	37	X	70341275	70341275	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MED12	NM_005120	exon6	c.T834C	p.P278P	.	.	74	5	75	0	.	272
MED13L	23389	bcgsc.ca	37	12	116421133	116421133	+	Missense_Mutation	SNP	A	A	G	rs150222863	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MED13L	NM_015335	exon21	c.T4744C	p.S1582P	.	.	99	5	101	1	A|0.993;T|0.007	232
MEGF10	84466	bcgsc.ca	37	5	126754831	126754831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MEGF10	NM_032446	exon12	c.C1325T	p.P442L	.	.	155	8	163	0	.	94
MEGF6	1953	bcgsc.ca	37	1	3418358	3418358	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MEGF6	NM_001409	exon19	c.2314+2T>A	.	.	.	52	4	150	0	.	90
MEP1B	4225	bcgsc.ca	37	18	29793207	29793207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MEP1B	NM_005925	exon11	c.C1264A	p.L422I	.	.	140	5	119	0	.	92
MERTK	10461	ucsc.edu;bcgsc.ca	37	2	112702624	112702624	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MERTK	NM_006343	exon3	c.C570T	p.Y190Y	.	.	40	4	30	0	.	1463
MFSD1	64747	ucsc.edu;bcgsc.ca	37	3	158537505	158537505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MFSD1	NM_022736	exon8	c.G867T	p.E289D	.	.	46	4	46	0	.	90
MICAL2	9645	bcgsc.ca	37	11	12261002	12261002	+	Missense_Mutation	SNP	G	G	T	rs143547096	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MICAL2	NM_014632	exon17	c.G2084T	p.R695L	.	.	91	4	98	0	G|0.999;A|0.001	92
MID2	11043	bcgsc.ca	37	X	107097928	107097928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MID2	NM_012216	exon3	c.G810T	p.Q270H	.	.	20	3	23	0	.	227
MIER3	166968	bcgsc.ca	37	5	56219642	56219642	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MIER3	NM_152622	exon12	c.A1068T	p.L356F	.	.	136	5	102	0	.	90
MLL2	8085	ucsc.edu	37	12	49441834	49441834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MLL2	NM_003482	exon14	c.G4150A	p.G1384S	.	.	21	4	17	0	.	612
MLL2	8085	bcgsc.ca	37	12	49431470	49431470	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MLL2	NM_003482	exon34	c.T9669C	p.P3223P	.	.	53	4	73	0	.	612
MLL	4297	bcgsc.ca	37	11	118352606	118352606	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MLL	NM_001197104	exon7	c.A3811G	p.S1271G	.	.	71	4	78	0	.	1255
MLLT4	4301	bcgsc.ca	37	6	168370587	168370587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MLLT4	NM_001207008	exon32	c.A5204G	p.E1735G	.	.	60	4	43	0	.	685
MMAA	166785	bcgsc.ca	37	4	146560317	146560317	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MMAA	NM_172250	exon2	c.A26G	p.H9R	.	.	69	4	55	0	.	91
MMADHC	27249	bcgsc.ca	37	2	150426631	150426631	+	Silent	SNP	G	G	T	rs118204048	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MMADHC	NM_015702	exon8	c.C748A	p.R250R	.	.	219	7	116	0	.	226
MMRN1	22915	bcgsc.ca	37	4	90816505	90816505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MMRN1	NM_007351	exon1	c.G383T	p.G128V	.	.	70	4	42	0	.	94
MOCS1	4337	ucsc.edu	37	6	39877595	39877595	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	MOCS1,NS,carcinoma,-1	MOCS1	NM_005943	exon8	c.G1086T	p.K362N	.	.	50	5	21	0	.	92
MORC1	27136	bcgsc.ca	37	3	108703616	108703616	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MORC1	NM_014429	exon23	c.G2271A	p.L757L	.	.	80	4	46	0	.	98
MORC3	23515	bcgsc.ca	37	21	37741300	37741300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MORC3	NM_015358	exon15	c.T1634C	p.L545P	.	.	73	5	51	0	.	92
MOV10	4343	bcgsc.ca	37	1	113242369	113242369	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MOV10	NM_020963	exon18	c.A2646G	p.R882R	.	.	91	4	62	0	.	95
MPHOSPH9	10198	bcgsc.ca	37	12	123706258	123706258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MPHOSPH9	NM_022782	exon1	c.A77G	p.Q26R	.	.	158	6	148	0	.	514
MPP2	4355	bcgsc.ca	37	17	41958690	41958690	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MPP2	NM_005374	exon8	c.G841A	p.G281R	.	.	60	4	85	0	.	90
MPPE1	65258	bcgsc.ca	37	18	11888673	11888673	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MPPE1	NM_001242904	exon5	c.C564A	p.G188G	.	.	58	4	39	0	.	90
MRGPRG	386746	bcgsc.ca	37	11	3239390	3239390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MRGPRG	NM_001164377	exon1	c.G654T	p.W218C	.	.	28	4	47	1	.	68
MRM1	79922	ucsc.edu	37	17	34964181	34964181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MRM1	NM_024864	exon3	c.A712G	p.I238V	.	.	51	4	49	0	.	90
MROH2B	133558	bcgsc.ca	37	5	41012775	41012775	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_173489	exon30	c.T3045C	p.G1015G	.	.	61	4	45	1	.	.
MRPL40	64976	bcgsc.ca	37	22	19422393	19422393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MRPL40	NM_003776	exon3	c.C272A	p.P91H	.	.	106	5	128	1	.	90
MRPS16	51021	ucsc.edu	37	10	75008965	75008965	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MRPS16	.	.	.	.	.	.	137	1	81	1	.	90
MS4A5	64232	bcgsc.ca	37	11	60197264	60197264	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MS4A5	NM_023945	exon1	c.G117A	p.L39L	.	.	44	4	36	0	.	154
MTF1	4520	bcgsc.ca	37	1	38323198	38323198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MTF1	NM_005955	exon2	c.G133T	p.D45Y	.	.	117	5	86	1	.	92
MTMR8	55613	bcgsc.ca	37	X	63551556	63551556	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MTMR8	NM_017677	exon11	c.A1233G	p.E411E	.	.	64	4	52	0	.	195
MTRF1L	54516	ucsc.edu	37	6	153313992	153313992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MTRF1L	NM_019041	exon5	c.G805A	p.G269S	.	.	45	4	20	0	.	90
MTUS1	57509	bcgsc.ca	37	8	17611339	17611339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MTUS1	NM_001001924	exon2	c.G1978T	p.D660Y	.	.	133	6	125	0	.	92
MTUS1	57509	ucsc.edu	37	8	17503552	17503552	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MTUS1	NM_001001924	exon15	c.G3696A	p.W1232X	.	.	38	4	42	0	.	92
MUC16	94025	bcgsc.ca	37	19	9089716	9089716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MUC16	NM_024690	exon1	c.C2099A	p.P700Q	.	.	64	4	80	0	.	566
MUC17	140453	bcgsc.ca	37	7	100685021	100685021	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MUC17	NM_001040105	exon3	c.A10324G	p.I3442V	.	.	75	5	64	0	.	95
MVD	4597	bcgsc.ca	37	16	88722613	88722613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MVD	NM_002461	exon5	c.T503C	p.V168A	.	.	18	3	28	0	.	90
MYBPC2	4606	ucsc.edu;bcgsc.ca	37	19	50965201	50965201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYBPC2	NM_004533	exon26	c.A3136G	p.M1046V	.	.	45	4	63	0	.	67
MYCBP2	23077	bcgsc.ca	37	13	77656022	77656022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYCBP2	NM_015057	exon64	c.G11143A	p.E3715K	.	.	92	4	38	0	.	236
MYCBP2	23077	bcgsc.ca	37	13	77759489	77759489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYCBP2	NM_015057	exon32	c.G4468A	p.E1490K	.	.	109	6	71	0	.	236
MYH6	4624	bcgsc.ca	37	14	23862126	23862126	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYH6	NM_002471	exon24	c.T3246A	p.L1082L	.	.	54	4	33	0	.	94
MYO16	23026	bcgsc.ca	37	13	109562402	109562402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO16	NM_001198950	exon16	c.T1829C	p.L610P	.	.	153	6	90	0	.	142
MYO6	4646	bcgsc.ca	37	6	76623950	76623950	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO6	NM_004999	exon34	c.C3610A	p.R1204R	.	.	72	6	45	0	.	92
MYO7B	4648	bcgsc.ca	37	2	128364891	128364891	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO7B	NM_001080527	exon21	c.A2535G	p.G845G	.	.	110	7	126	2	.	47
MYO9A	4649	bcgsc.ca	37	15	72172804	72172804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO9A	NM_006901	exon29	c.G5494T	p.A1832S	.	.	95	5	60	0	.	93
MYO9A	4649	bcgsc.ca	37	15	72189826	72189826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO9A	NM_006901	exon25	c.C5018A	p.P1673Q	.	.	140	9	85	0	.	93
MYO9A	4649	bcgsc.ca	37	15	72300229	72300229	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYO9A	NM_006901	exon8	c.C1318A	p.R440R	.	.	97	5	63	0	.	93
MYPN	84665	bcgsc.ca	37	10	69955236	69955236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	MYPN	NM_001256267	exon16	c.G3105T	p.M1035I	.	.	215	8	172	1	.	95
N4BP2	55728	bcgsc.ca	37	4	40146281	40146281	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	N4BP2	NM_018177	exon16	c.A5004G	p.E1668E	.	.	96	5	117	0	.	602
NAA40	79829	bcgsc.ca	37	11	63721827	63721827	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NAA40	NM_024771	exon8	c.C590A	p.S197Y	.	.	106	5	107	0	.	90
NAB1	4664	bcgsc.ca	37	2	191535107	191535107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NAB1	NM_005966	exon5	c.C875T	p.T292I	.	.	62	4	54	0	.	226
NAPEPLD	222236	bcgsc.ca	37	7	102760464	102760464	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NAPEPLD	NM_001122838	exon3	c.T501C	p.R167R	.	.	81	5	66	0	.	227
NBPF3	84224	bcgsc.ca	37	1	21800049	21800049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NBPF3	NM_001256416	exon7	c.A911G	p.K304R	.	.	157	6	134	1	.	92
NCKAP1L	3071	bcgsc.ca	37	12	54893149	54893149	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NCKAP1L	NM_005337	exon2	c.A113G	p.D38G	.	.	98	4	75	0	.	93
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3526	3526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	ENST00000361390	exon1	c.G220A	p.A74T	.	.	391	14	219	0	.	.
NDEL1	81565	bcgsc.ca	37	17	8349181	8349181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NDEL1	NM_001025579	exon3	c.A239G	p.K80R	.	.	62	4	52	0	.	90
NEB	4703	ucsc.edu	37	2	152355870	152355870	+	Missense_Mutation	SNP	G	G	T	rs189655274	by1000genomes;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NEB	NM_001271208	exon170	c.C24161A	p.P8054Q	.	.	37	4	24	0	G|0.999;A|0.001	145
NEDD4	4734	bcgsc.ca	37	15	56144658	56144658	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NEDD4	NM_198400	exon6	c.T2151C	p.N717N	.	.	208	7	157	0	.	723
NES	10763	bcgsc.ca	37	1	156645081	156645081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NES	NM_006617	exon2	c.G835T	p.A279S	.	.	60	4	78	0	.	520
NFAM1	150372	ucsc.edu	37	22	42805522	42805522	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NFAM1	NM_145912	exon3	c.A483G	p.P161P	.	.	39	4	25	0	.	90
NFRKB	4798	bcgsc.ca	37	11	129756293	129756293	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NFRKB	NM_006165	exon3	c.C423T	p.F141F	.	.	63	4	56	1	.	93
NHSL1	57224	ucsc.edu	37	6	138751818	138751818	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NHSL1	NM_020464	exon5	c.G3676T	p.E1226X	.	.	36	5	40	0	.	68
NKD1	85407	bcgsc.ca	37	16	50666317	50666317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NKD1	NM_033119	exon9	c.C821T	p.P274L	.	.	71	4	84	0	.	226
NKTR	4820	bcgsc.ca	37	3	42681110	42681110	+	Missense_Mutation	SNP	G	G	T	rs150617855	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NKTR	NM_005385	exon13	c.G3914T	p.R1305L	.	.	144	7	88	0	G|1.000;A|0.000	93
NLRP5	126206	ucsc.edu;bcgsc.ca	37	19	56515221	56515221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NLRP5	NM_153447	exon2	c.T202C	p.C68R	.	.	40	5	41	0	.	162
NLRP9	338321	bcgsc.ca	37	19	56223916	56223916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NLRP9	NM_176820	exon7	c.A2542G	p.I848V	.	.	67	4	83	0	.	294
NOC2L	26155	bcgsc.ca	37	1	894366	894366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOC2L	NM_015658	exon2	c.G122A	p.R41Q	.	.	27	4	65	0	.	92
NOL11	25926	bcgsc.ca	37	17	65733718	65733718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOL11	NM_015462	exon12	c.C1313T	p.T438I	.	.	139	5	93	0	.	90
NOL6	65083	bcgsc.ca	37	9	33468377	33468377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOL6	NM_022917	exon10	c.T1250C	p.L417P	.	.	54	4	78	0	.	92
NOL9	79707	bcgsc.ca	37	1	6589206	6589206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOL9	NM_024654	exon10	c.G1673T	p.R558L	.	.	71	4	71	0	.	515
NOLC1	9221	bcgsc.ca	37	10	103919720	103919720	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOLC1	NM_004741	exon8	c.C927A	p.P309P	.	.	57	4	62	0	.	91
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120529625	120529625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NOTCH2	NM_001200001	exon5	c.G832T	p.G278W	.	.	38	4	29	0	.	1441
NPAP1	23742	bcgsc.ca	37	15	24923999	24923999	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_018958	exon1	c.C2985A	p.T995T	.	.	64	5	64	0	.	.
NPAT	4863	bcgsc.ca	37	11	108043047	108043047	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NPAT	NM_002519	exon13	c.G2664T	p.V888V	.	.	111	5	94	0	.	117
NPHP1	4867	bcgsc.ca	37	2	110902081	110902081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NPHP1	NM_000272	exon15	c.T1586C	p.I529T	.	.	163	5	121	0	.	92
NPTXR	23467	ucsc.edu;bcgsc.ca	37	22	39224465	39224465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NPTXR	NM_014293	exon2	c.C677T	p.A226V	.	.	23	4	24	0	.	92
NRCAM	4897	bcgsc.ca	37	7	107878204	107878204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NRCAM	NM_001037132	exon2	c.T116C	p.L39P	.	.	146	5	55	0	.	156
NTSR1	4923	ucsc.edu;bcgsc.ca	37	20	61340805	61340805	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NTSR1	NM_002531	exon1	c.G246T	p.T82T	.	.	34	4	54	0	.	524
NUCB1	4924	ucsc.edu;bcgsc.ca	37	19	49425171	49425171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUCB1	NM_006184	exon12	c.A1261G	p.K421E	.	.	56	6	94	0	.	90
NUDCD1	84955	bcgsc.ca	37	8	110308651	110308651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUDCD1	NM_032869	exon3	c.A421G	p.T141A	.	.	78	4	56	0	.	227
NUP188	23511	bcgsc.ca	37	9	131749094	131749094	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUP188	NM_015354	exon22	c.T2204C	p.L735P	.	.	84	4	87	0	.	207
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135330244	135330244	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	NUP205	NM_015135	exon41	c.T5712G	p.L1904L	.	.	184	23	125	0	.	207
NYAP2	57624	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	226378354	226378354	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020864	exon3	c.C489T	p.A163A	.	.	48	9	41	0	.	.
OAS2	4939	bcgsc.ca	37	12	113445508	113445508	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OAS2	NM_002535	exon9	c.1657-2A>G	.	.	.	65	4	54	0	.	91
OBSCN	84033	bcgsc.ca	37	1	228412300	228412300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OBSCN	NM_001271223	exon10	c.T3070C	p.S1024P	.	.	116	6	134	0	.	403
OCLM	10896	bcgsc.ca	37	1	186370204	186370204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_022375	exon1	c.A27T	p.L9F	.	.	59	4	55	0	.	.
OCRL	4952	bcgsc.ca	37	X	128692871	128692871	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OCRL	NM_000276	exon8	c.C615A	p.T205T	.	.	64	4	52	0	.	206
OGDH	4967	ucsc.edu	37	7	44714829	44714829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OGDH	NM_002541	exon8	c.T988C	p.F330L	.	.	38	4	49	0	.	228
OGFOD1	55239	bcgsc.ca	37	16	56504673	56504673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OGFOD1	NM_018233	exon10	c.C1255A	p.P419T	.	.	121	6	85	1	.	69
OR10AD1	121275	bcgsc.ca	37	12	48596278	48596278	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR10AD1	NM_001004134	exon1	c.A798G	p.T266T	.	.	59	4	42	0	.	69
OR2H1	26716	bcgsc.ca	37	6	29430066	29430066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR2H1	NM_030883	exon3	c.G520T	p.D174Y	.	.	91	5	89	0	.	90
OR4A5	81318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51411592	51411592	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4A5	NM_001005272	exon1	c.G804T	p.M268I	.	.	87	16	71	0	.	92
OR4L1	122742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20528668	20528668	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR4L1	NM_001004717	exon1	c.C465T	p.H155H	.	.	103	14	53	0	.	72
OR51I1	390063	bcgsc.ca	37	11	5462120	5462120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR51I1	NM_001005288	exon1	c.T625C	p.Y209H	.	.	79	6	55	0	.	69
OR52J3	119679	bcgsc.ca	37	11	5068007	5068007	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR52J3	NM_001001916	exon1	c.G252T	p.L84L	.	.	118	6	87	0	.	71
OR5AU1	390445	bcgsc.ca	37	14	21623491	21623491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR5AU1	NM_001004731	exon1	c.G694A	p.G232R	.	.	67	5	69	0	.	68
OR5L2	26338	ucsc.edu;bcgsc.ca	37	11	55595514	55595514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR5L2	NM_001004739	exon1	c.G820T	p.A274S	.	.	50	6	43	0	.	69
OR6N1	128372	bcgsc.ca	37	1	158735713	158735713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR6N1	NM_001005185	exon1	c.A760G	p.S254G	.	.	50	4	49	0	.	69
OR6T1	219874	bcgsc.ca	37	11	123814187	123814187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR6T1	NM_001005187	exon1	c.T359C	p.L120P	.	.	68	4	51	0	.	69
OR8H2	390151	bcgsc.ca	37	11	55873185	55873185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OR8H2	NM_001005200	exon1	c.T667C	p.F223L	.	.	113	6	110	0	.	70
OTUD6A	139562	ucsc.edu;bcgsc.ca	37	X	69282482	69282482	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OTUD6A	NM_207320	exon1	c.C108A	p.T36T	.	.	52	5	61	0	.	541
OVCH2	341277	bcgsc.ca	37	11	7723322	7723322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OVCH2	NM_198185	exon5	c.G500T	p.R167L	.	.	86	4	52	0	.	68
OXR1	55074	bcgsc.ca	37	8	107531294	107531294	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OXR1	NM_001198532	exon2	c.A150G	p.E50E	.	.	88	5	69	0	.	68
OXSR1	9943	bcgsc.ca	37	3	38292955	38292955	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	OXSR1	NM_005109	exon16	c.A1437T	p.L479F	.	.	191	7	190	0	.	311
P2RX3	5024	bcgsc.ca	37	11	57106069	57106069	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	P2RX3	NM_002559	exon1	c.G45T	p.S15S	.	.	93	5	143	0	.	68
P4HA2	8974	ucsc.edu;bcgsc.ca	37	5	131531150	131531150	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	P4HA2	NM_004199	exon13	c.T1395C	p.G465G	.	.	37	4	41	0	.	68
PA2G4	5036	bcgsc.ca	37	12	56503665	56503665	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PA2G4	NM_006191	exon7	c.A575G	p.Q192R	.	.	75	4	55	0	.	68
PABPC1	26986	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101718907	101718907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PABPC1	NM_002568	exon11	c.A1574G	p.N525S	.	.	134	16	87	0	.	68
PADI4	23569	ucsc.edu;bcgsc.ca	37	1	17682885	17682885	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PADI4	NM_012387	exon13	c.T1489C	p.C497R	.	.	44	4	46	0	.	70
PADI6	353238	bcgsc.ca	37	1	17715300	17715300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PADI6	NM_207421	exon8	c.A887G	p.D296G	.	.	65	4	88	0	.	113
PALB2	79728	bcgsc.ca	37	16	23646474	23646474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PALB2	NM_024675	exon4	c.A1393G	p.M465V	.	.	95	4	85	0	.	1351
PAN3	255967	bcgsc.ca	37	13	28862201	28862201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PAN3	NM_175854	exon18	c.T2465C	p.V822A	.	.	123	5	89	0	.	69
PANK4	55229	bcgsc.ca	37	1	2440436	2440436	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PANK4	NM_018216	exon19	c.G2172A	p.E724E	.	.	31	4	70	0	.	158
PANX2	56666	bcgsc.ca	37	22	50609356	50609356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PANX2	NM_052839	exon1	c.T197C	p.V66A	.	.	27	4	49	0	.	131
PARD3	56288	bcgsc.ca	37	10	34671508	34671508	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PARD3	NM_001184788	exon9	c.C1359A	p.T453T	.	.	114	5	98	0	.	92
PARP14	54625	bcgsc.ca	37	3	122447283	122447283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PARP14	NM_017554	exon17	c.A5245G	p.T1749A	.	.	86	5	69	0	.	525
PATL1	219988	bcgsc.ca	37	11	59420390	59420390	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PATL1	NM_152716	exon10	c.G1223T	p.R408L	.	.	96	4	88	0	.	1
PAWR	5074	bcgsc.ca	37	12	79986393	79986393	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PAWR	NM_002583	exon7	c.C1017T	p.T339T	.	.	153	6	52	1	.	90
PAX8	7849	ucsc.edu;bcgsc.ca	37	2	114004482	114004482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PAX8	NM_013952	exon3	c.A40G	p.N14D	.	.	40	4	48	0	.	684
PCDH9	5101	bcgsc.ca	37	13	66878992	66878992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCDH9	NM_203487	exon5	c.A3509G	p.K1170R	.	.	135	5	103	0	.	96
PCDHGA10	56106	bcgsc.ca	37	5	140794316	140794316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_032090	exon1	c.A1574G	p.D525G	.	.	78	4	73	1	.	.
PCIF1	63935	ucsc.edu;bcgsc.ca	37	20	44574480	44574480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCIF1	NM_022104	exon12	c.G1299T	p.K433N	.	.	37	4	41	0	.	91
PCNXL2	80003	bcgsc.ca	37	1	233397030	233397030	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCNXL2	NM_014801	exon5	c.517+1G>A	.	.	.	40	4	30	0	.	91
PCSK5	5125	bcgsc.ca	37	9	78936355	78936355	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PCSK5	NM_001190482	exon30	c.A3821G	p.D1274G	.	.	22	3	29	0	.	93
PDCD1LG2	80380	bcgsc.ca	37	9	5557738	5557738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDCD1LG2	NM_025239	exon5	c.T752C	p.L251P	.	.	134	6	138	0	.	227
PDE1C	5137	bcgsc.ca	37	7	31793106	31793106	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDE1C	NM_001191058	exon19	c.T2202C	p.P734P	.	.	66	4	81	0	.	94
PDE8A	5151	bcgsc.ca	37	15	85607640	85607640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDE8A	NM_173454	exon2	c.C226A	p.H76N	.	.	154	5	103	0	.	94
PDK3	5165	bcgsc.ca	37	X	24537070	24537070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDK3	NM_005391	exon6	c.A616G	p.M206V	.	.	150	7	99	0	.	377
PDSS2	57107	ucsc.edu;bcgsc.ca	37	6	107655522	107655522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PDSS2	NM_020381	exon2	c.A311G	p.D104G	.	.	38	5	23	0	.	92
PENK	5179	bcgsc.ca	37	8	57354375	57354375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PENK	NM_001135690	exon4	c.A260G	p.N87S	.	.	67	4	64	0	.	517
PEX11A	8800	bcgsc.ca	37	15	90226671	90226671	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PEX11A	NM_003847	exon3	c.T681C	p.L227L	.	.	135	5	94	0	.	90
PEX11G	92960	bcgsc.ca	37	19	7546934	7546934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PEX11G	NM_001270539	exon3	c.T413C	p.L138P	.	.	12	3	32	0	.	90
PEX1	5189	bcgsc.ca	37	7	92134202	92134202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PEX1	NM_000466	exon12	c.A1915G	p.N639D	.	.	86	6	65	0	.	91
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211485	249211485	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGBD2	NM_170725	exon3	c.C702T	p.N234N	.	.	42	8	37	0	.	91
PGLS	25796	ucsc.edu;bcgsc.ca	37	19	17627038	17627038	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGLS	NM_012088	exon2	c.C345A	p.P115P	.	.	61	5	73	0	.	90
PGM2	55276	bcgsc.ca	37	4	37831686	37831686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGM2	NM_018290	exon2	c.G182T	p.G61V	.	.	77	5	57	0	.	91
PGR	5241	bcgsc.ca	37	11	100933421	100933421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PGR	NM_000926	exon4	c.C1969T	p.P657S	.	.	64	5	35	0	.	652
PHACTR2	9749	bcgsc.ca	37	6	144098478	144098478	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHACTR2	NM_001100164	exon9	c.A1603G	p.R535G	.	.	50	4	36	0	.	92
PHF10	55274	bcgsc.ca	37	6	170105780	170105780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF10	NM_018288	exon10	c.A1154G	p.K385R	.	.	84	4	74	0	.	226
PHF15	23338	bcgsc.ca	37	5	133901818	133901818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF15	NM_015288	exon9	c.T982C	p.S328P	.	.	90	5	98	1	.	90
PHF20	51230	broad.mit.edu;bcgsc.ca	37	20	34389481	34389481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF20	NM_016436	exon2	c.T37C	p.F13L	.	.	68	6	40	1	.	515
PHF3	23469	bcgsc.ca	37	6	64401881	64401881	+	Missense_Mutation	SNP	G	G	T	rs142808974		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHF3	NM_015153	exon4	c.G2444T	p.R815I	.	.	182	7	134	0	G|1.000;T|0.000	229
PHLPP1	23239	bcgsc.ca	37	18	60570327	60570327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_194449	exon7	c.T2575C	p.C859R	.	.	76	4	65	0	.	.
PHLPP1	23239	bcgsc.ca	37	18	60645790	60645790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_194449	exon17	c.A4280G	p.D1427G	.	.	42	4	42	1	.	.
PHRF1	57661	ucsc.edu;bcgsc.ca	37	11	611703	611703	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PHRF1	NM_020901	exon18	c.A4873G	p.K1625E	.	.	35	4	48	0	.	22
PIAS4	51588	bcgsc.ca	37	19	4033497	4033497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PIAS4	NM_015897	exon9	c.T1061C	p.L354P	.	.	41	4	55	0	.	659
PIGM	93183	bcgsc.ca	37	1	160001235	160001235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PIGM	NM_145167	exon1	c.T295C	p.F99L	.	.	72	6	85	0	.	228
PIGW	284098	bcgsc.ca	37	17	34893747	34893747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PIGW	NM_178517	exon2	c.T797C	p.L266P	.	.	103	5	75	0	.	226
PION	54103	bcgsc.ca	37	7	76959583	76959583	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PION	NM_017439	exon20	c.A1647G	p.R549R	.	.	117	6	76	0	.	514
PKD1L1	168507	bcgsc.ca	37	7	47927633	47927633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKD1L1	NM_138295	exon17	c.T2791C	p.W931R	.	.	84	4	71	0	.	145
PKD1L1	168507	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47937789	47937789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKD1L1	NM_138295	exon14	c.A2067G	p.I689M	.	.	29	4	30	0	.	145
PKHD1	5314	bcgsc.ca	37	6	51656158	51656158	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKHD1	NM_170724	exon53	c.T8316C	p.L2772L	.	.	50	4	38	0	.	603
PKHD1	5314	ucsc.edu	37	6	51776639	51776639	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKHD1	NM_170724	exon39	c.G6448T	p.E2150X	.	.	43	4	27	0	.	603
PKP4	8502	bcgsc.ca	37	2	159533314	159533314	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PKP4	NM_003628	exon20	c.G3191T	p.R1064M	.	.	58	4	62	0	.	97
PLA2G12B	84647	bcgsc.ca	37	10	74695413	74695413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLA2G12B	NM_032562	exon4	c.G550A	p.A184T	.	.	62	4	61	0	.	91
PLA2G4D	283748	ucsc.edu;bcgsc.ca	37	15	42364567	42364567	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLA2G4D	NM_178034	exon14	c.A1341G	p.G447G	.	.	25	4	29	0	.	136
PLAC8L1	153770	bcgsc.ca	37	5	145483800	145483800	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLAC8L1	NM_001029869	exon1	c.G75A	p.L25L	.	.	77	4	81	0	.	90
PLAU	5328	ucsc.edu;bcgsc.ca	37	10	75672838	75672838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLAU	NM_002658	exon5	c.G350A	p.G117E	.	.	42	4	42	1	.	118
PLBD1	79887	bcgsc.ca	37	12	14706180	14706180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLBD1	NM_024829	exon2	c.C282A	p.S94R	.	.	79	5	73	0	.	90
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031511	64031511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLCB3	NM_000932	exon22	c.T2579C	p.I860T	.	.	49	4	62	0	.	228
PLCD4	84812	bcgsc.ca	37	2	219499304	219499304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLCD4	NM_032726	exon13	c.A1847G	p.H616R	.	.	79	5	82	1	.	661
PLCH1	23007	bcgsc.ca	37	3	155311825	155311825	+	Silent	SNP	G	G	T	rs149052198	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLCH1	NM_001130960	exon3	c.C339A	p.P113P	.	.	98	5	102	0	G|0.999;A|0.001	151
PLEKHA1	59338	bcgsc.ca	37	10	124172469	124172469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLEKHA1	NM_001195608	exon7	c.G376T	p.D126Y	.	.	77	4	49	0	.	226
PLEKHM3	389072	bcgsc.ca	37	2	208842239	208842239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	PLEKHM3,NS,carcinoma,+2	PLEKHM3	NM_001080475	exon3	c.T682C	p.W228R	.	.	104	5	102	0	.	23
PLIN4	729359	bcgsc.ca	37	19	4511493	4511493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLIN4	NM_001080400	exon3	c.G2437T	p.G813C	.	.	112	7	179	0	.	68
PLK3	1263	bcgsc.ca	37	1	45269869	45269869	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLK3	NM_004073	exon11	c.G1293A	p.V431V	.	.	85	4	107	0	.	333
PLXNA4	91584	bcgsc.ca	37	7	131849896	131849896	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PLXNA4	NM_020911	exon23	c.C4350A	p.L1450L	.	.	75	4	81	0	.	91
PM20D1	148811	broad.mit.edu	37	1	205799442	205799442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PM20D1	NM_152491	exon12	c.T1351C	p.Y451H	.	.	147	5	88	0	.	69
PMS1	5378	hgsc.bcm.edu;broad.mit.edu	37	2	190719433	190719433	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PMS1	NM_001128144	exon9	c.1435delG	p.G479fs	.	.	132	14	88	0	.	1396
PNPLA8	50640	bcgsc.ca	37	7	108155867	108155867	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PNPLA8	NM_001256008	exon2	c.G69T	p.K23N	.	.	102	5	55	0	.	135
POM121	9883	bcgsc.ca	37	7	72397338	72397338	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	POM121	NM_001257190	exon6	c.66-2A>T	.	.	.	149	6	122	0	.	226
POPDC2	64091	ucsc.edu	37	3	119373431	119373431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	POPDC2	NM_022135	exon2	c.T521C	p.L174P	.	.	48	4	22	0	.	90
POU5F1	5460	ucsc.edu	37	6	31133391	31133391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	POU5F1	NM_002701	exon3	c.A614G	p.Q205R	.	.	38	4	41	0	.	658
PPARGC1A	10891	bcgsc.ca	37	4	23803465	23803465	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPARGC1A	NM_013261	exon12	c.T2181C	p.D727D	.	.	132	6	81	0	.	230
PPEF2	5470	bcgsc.ca	37	4	76811236	76811236	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPEF2	NM_006239	exon5	c.C291A	p.S97S	.	.	117	5	143	0	.	228
PPFIBP1	8496	bcgsc.ca	37	12	27817378	27817378	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPFIBP1	NM_003622	exon12	c.A990G	p.K330K	.	.	259	7	159	0	.	228
PPIL2	23759	bcgsc.ca	37	22	22026671	22026671	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPIL2	NM_148176	exon5	c.243+1G>T	.	.	.	66	4	42	0	.	92
PPP1R12A	4659	bcgsc.ca	37	12	80200074	80200074	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP1R12A	NM_002480	exon13	c.T1695C	p.S565S	.	.	80	4	59	0	.	273
PPP1R12A	4659	bcgsc.ca	37	12	80202264	80202264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP1R12A	NM_002480	exon11	c.A1549G	p.R517G	.	.	67	4	42	0	.	273
PPP1R12A	4659	bcgsc.ca	37	12	80202292	80202292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP1R12A	NM_002480	exon11	c.T1521A	p.S507R	.	.	74	4	56	0	.	273
PPP2R2D	55844	ucsc.edu	37	10	133758799	133758799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP2R2D	.	.	.	.	.	.	44	4	42	0	.	227
PPP2R5E	5529	bcgsc.ca	37	14	63860595	63860595	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP2R5E	NM_006246	exon8	c.G792A	p.L264L	.	.	102	5	85	0	.	658
PPP6R3	55291	bcgsc.ca	37	11	68369352	68369352	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PPP6R3	NM_001164160	exon21	c.T2214A	p.S738R	.	.	66	4	52	0	.	91
PRELID1	27166	bcgsc.ca	37	5	176732914	176732914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRELID1	NM_013237	exon3	c.A361G	p.S121G	.	.	51	4	49	0	.	90
PREX1	57580	bcgsc.ca	37	20	47242454	47242454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PREX1	NM_020820	exon40	c.T4949C	p.L1650P	.	.	249	12	327	3	.	231
PRKCB	5579	bcgsc.ca	37	16	24043543	24043543	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRKCB	NM_212535	exon4	c.C375T	p.L125L	.	.	49	4	57	0	.	1530
PRKD1	5587	bcgsc.ca	37	14	30046490	30046490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRKD1	NM_002742	exon18	c.A2693G	p.E898G	.	.	188	6	120	0	.	1534
PRKD1	5587	bcgsc.ca	37	14	30099968	30099968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRKD1	NM_002742	exon10	c.G1652A	p.G551D	.	.	62	4	47	0	.	1534
PRKG2	5593	bcgsc.ca	37	4	82074866	82074866	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRKG2	NM_006259	exon6	c.G922T	p.D308Y	.	.	82	4	55	0	.	524
PROKR1	10887	bcgsc.ca	37	2	68882063	68882063	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PROKR1	NM_138964	exon2	c.C537A	p.A179A	.	.	90	4	72	0	.	523
PROM1	8842	bcgsc.ca	37	4	15981083	15981083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PROM1	NM_006017	exon25	c.G2517A	p.M839I	.	.	62	4	52	0	.	207
PROM2	150696	ucsc.edu;bcgsc.ca	37	2	95942074	95942074	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PROM2	NM_001165977	exon4	c.C597T	p.G199G	.	.	30	4	64	0	.	91
PRPF38A	84950	bcgsc.ca	37	1	52882330	52882330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRPF38A	NM_032864	exon10	c.A907G	p.S303G	.	.	217	6	158	1	.	90
PRPF39	55015	bcgsc.ca	37	14	45581624	45581624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRPF39	NM_017922	exon11	c.G1676A	p.G559D	.	.	52	5	27	0	.	70
PRR16	51334	ucsc.edu;bcgsc.ca	37	5	120021742	120021742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRR16	NM_016644	exon3	c.A184G	p.S62G	.	.	29	4	25	0	.	71
PRSS50	29122	bcgsc.ca	37	3	46754527	46754527	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PRSS50	NM_013270	exon5	c.A785G	p.E262G	.	.	115	5	120	1	.	90
PSMB1	5689	bcgsc.ca	37	6	170852730	170852730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PSMB1	NM_002793	exon4	c.C392T	p.P131L	.	.	88	5	61	0	.	91
PSMF1	9491	bcgsc.ca	37	20	1108135	1108135	+	Missense_Mutation	SNP	C	C	A	rs138799263	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PSMF1	NM_006814	exon3	c.C349A	p.L117M	.	.	54	4	45	0	C|1.000;G|0.000	90
PTCHD3	374308	bcgsc.ca	37	10	27687903	27687903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTCHD3	NM_001034842	exon4	c.G1624A	p.G542S	.	.	154	5	97	0	.	94
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96870207	96870207	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPDC1	NM_001253829	exon9	c.G2408A	p.G803D	.	.	131	11	78	0	.	227
PTPN1	5770	bcgsc.ca	37	20	49191155	49191155	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPN1	NM_002827	exon5	c.T456C	p.Y152Y	.	.	77	4	91	0	.	1082
PTPRG	5793	bcgsc.ca	37	3	62240824	62240824	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPRG	NM_002841	exon16	c.A2493G	p.K831K	.	.	104	6	67	0	.	419
PTPRK	5796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	128326319	128326319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPRK	NM_001135648	exon15	c.A2404G	p.M802V	.	.	72	7	52	0	.	231
PTPRR	5801	bcgsc.ca	37	12	71054775	71054775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PTPRR	NM_002849	exon12	c.G1711A	p.V571I	.	.	51	4	59	0	.	652
PTTG2	10744	bcgsc.ca	37	4	37962556	37962556	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_006607	exon1	c.G501T	p.V167V	.	.	70	4	66	1	.	.
PUM1	9698	bcgsc.ca	37	1	31409556	31409556	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PUM1	NM_001020658	exon21	c.C3369T	p.A1123A	.	.	64	4	54	1	.	92
PXK	54899	bcgsc.ca	37	3	58382927	58382927	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PXK	NM_017771	exon10	c.T984C	p.N328N	.	.	70	4	47	1	.	334
PXN	5829	ucsc.edu	37	12	120650143	120650143	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PXN	NM_001243756	exon11	c.A1792G	p.N598D	.	.	38	4	41	1	.	660
PYGO2	90780	ucsc.edu	37	1	154931769	154931769	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PYGO2	NM_138300	exon3	c.G707C	p.S236T	.	.	36	1	59	0	.	227
PZP	5858	ucsc.edu;bcgsc.ca	37	12	9333676	9333676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	PZP	NM_002864	exon15	c.T1742C	p.L581P	.	.	37	5	38	0	.	157
QSER1	79832	ucsc.edu;bcgsc.ca	37	11	32956305	32956305	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	QSER1	NM_001076786	exon4	c.A3114G	p.P1038P	.	.	43	4	39	0	.	95
RAB2A	5862	bcgsc.ca	37	8	61531177	61531177	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAB2A	NM_002865	exon7	c.T513C	p.I171I	.	.	232	6	103	0	.	659
RABGGTA	5875	ucsc.edu;bcgsc.ca	37	14	24737766	24737766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_004581	exon9	c.C960A	p.V320V	.	.	43	4	44	0	.	.
RABL3	285282	bcgsc.ca	37	3	120449618	120449618	+	Silent	SNP	C	C	A	rs141368384	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RABL3	NM_173825	exon2	c.G63T	p.S21S	.	.	46	4	40	0	C|1.000;T|0.000	227
RAD51AP2	729475	bcgsc.ca	37	2	17696550	17696550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAD51AP2	NM_001099218	exon1	c.C3133A	p.Q1045K	.	.	175	6	134	0	.	23
RAD54L2	23132	ucsc.edu;bcgsc.ca	37	3	51696480	51696480	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAD54L2	NM_015106	exon22	c.A3448G	p.R1150G	.	.	44	4	55	0	.	93
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109347859	109347859	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon4	c.G334T	p.G112X	.	.	841	110	858	0	.	675
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109392308	109392308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP2	NM_006267	exon24	c.T8413C	p.S2805P	.	.	45	5	34	1	.	675
RANBP3L	202151	bcgsc.ca	37	5	36260939	36260939	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RANBP3L	NM_001161429	exon9	c.T687C	p.S229S	.	.	223	6	112	0	.	91
RAPGEF1	2889	ucsc.edu	37	9	134501636	134501636	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RAPGEF1	NM_198679	exon10	c.G1378T	p.G460X	.	.	50	5	86	0	.	849
RBAK	57786	bcgsc.ca	37	7	5103897	5103897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBAK	NM_001204456	exon6	c.C810A	p.F270L	.	.	48	4	38	0	.	653
RBBP6	5930	bcgsc.ca	37	16	24567154	24567154	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBBP6	NM_018703	exon6	c.A450G	p.K150K	.	.	89	6	74	0	.	230
RBFOX2	23543	bcgsc.ca	37	22	36161478	36161478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBFOX2	NM_001082578	exon7	c.A809G	p.Y270C	.	.	179	6	106	0	.	90
RBM28	55131	bcgsc.ca	37	7	127961369	127961369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBM28	NM_018077	exon14	c.A1513G	p.K505E	.	.	60	4	68	0	.	92
RBM33	155435	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	155457902	155457902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBM33	NM_053043	exon2	c.C77G	p.A26G	.	.	103	20	87	1	.	23
RBMX	27316	ucsc.edu	37	X	135961243	135961243	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RBMX	NM_001164803	exon3	c.G149T	p.G50V	.	.	39	4	51	0	.	131
RCOR1	23186	bcgsc.ca	37	14	103148259	103148259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RCOR1	NM_015156	exon3	c.G389T	p.R130L	.	.	72	4	63	0	.	91
RECK	8434	bcgsc.ca	37	9	36112421	36112421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RECK	NM_021111	exon16	c.T2008C	p.S670P	.	.	80	5	99	0	.	93
REPS2	9185	bcgsc.ca	37	X	17157019	17157019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	REPS2	NM_004726	exon17	c.C1849A	p.R617S	.	.	68	4	37	0	.	131
RER1	11079	bcgsc.ca	37	1	2330853	2330853	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RER1	NM_007033	exon4	c.187-1G>T	.	.	.	88	4	142	0	.	90
REXO1	57455	ucsc.edu	37	19	1816706	1816706	+	Missense_Mutation	SNP	T	T	A	rs140613923	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	REXO1	NM_020695	exon13	c.A3308T	p.Y1103F	.	.	48	4	84	0	T|1.000;C|0.000	90
RFX3	5991	bcgsc.ca	37	9	3257183	3257183	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RFX3	NM_134428	exon15	c.T1622C	p.V541A	.	.	57	5	48	0	.	93
RGAG1	57529	bcgsc.ca	37	X	109698451	109698451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RGAG1	NM_020769	exon4	c.T4069C	p.C1357R	.	.	49	4	60	0	.	132
RHBDF2	79651	ucsc.edu	37	17	74470587	74470587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RHBDF2	NM_024599	exon12	c.C1419A	p.F473L	.	.	34	4	26	0	.	90
RHPN2	85415	bcgsc.ca	37	19	33484914	33484914	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RHPN2	NM_033103	exon12	c.A1466G	p.K489R	.	.	101	6	112	1	.	516
RHPN2	85415	ucsc.edu	37	19	33512484	33512484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RHPN2	NM_033103	exon4	c.T383C	p.V128A	.	.	46	4	43	0	.	516
RMDN2	151393	bcgsc.ca	37	2	38224621	38224621	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_144713	exon8	c.T1542C	p.S514S	.	.	73	4	48	0	.	.
RMI1	80010	bcgsc.ca	37	9	86616261	86616261	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RMI1	NM_024945	exon3	c.A360G	p.A120A	.	.	74	5	42	0	.	90
RNASE6	6039	bcgsc.ca	37	14	21249861	21249861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RNASE6	NM_005615	exon2	c.G3T	p.M1I	.	.	62	4	45	0	.	90
RNF111	54778	bcgsc.ca	37	15	59359084	59359084	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RNF111	NM_017610	exon6	c.A1488G	p.A496A	.	.	101	5	106	0	.	92
RNF135	84282	bcgsc.ca	37	17	29326020	29326020	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RNF135	NM_032322	exon5	c.A1110G	p.S370S	.	.	60	4	58	0	.	227
RNF17	56163	bcgsc.ca	37	13	25376640	25376640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RNF17	NM_001184993	exon14	c.C1880A	p.P627Q	.	.	143	5	104	0	.	228
RNF180	285671	bcgsc.ca	37	5	63665557	63665557	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RNF180	NM_001113561	exon8	c.G1695T	p.M565I	.	.	347	10	234	0	.	90
RNF216P1	441191	bcgsc.ca	37	7	5016059	5016059	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	165	6	111	0	.	.
ROBO1	6091	bcgsc.ca	37	3	78717189	78717189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ROBO1	NM_002941	exon14	c.G1810A	p.G604S	.	.	79	4	70	0	.	67
ROCK2	9475	bcgsc.ca	37	2	11338652	11338652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ROCK2	NM_004850	exon25	c.A3064G	p.K1022E	.	.	114	5	70	0	.	546
RP2	6102	ucsc.edu	37	X	46713224	46713224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RP2	NM_006915	exon2	c.C416T	p.S139F	.	.	31	4	21	0	.	130
RPGR	6103	bcgsc.ca	37	X	38146251	38146251	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RPGR	NM_001034853	exon15	c.A2001G	p.E667E	.	.	165	6	149	0	.	131
RPL31	6160	bcgsc.ca	37	2	101622816	101622816	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RPL31	NM_000993	exon5	c.A351G	p.L117L	.	.	139	6	122	0	.	90
RPL3L	6123	bcgsc.ca	37	16	2000979	2000979	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RPL3L	NM_005061	exon4	c.C367A	p.H123N	.	.	49	4	49	0	.	90
RPLP0P2	113157	bcgsc.ca	37	11	61404583	61404583	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	.	.	.	.	.	.	56	4	50	0	.	.
RPRD2	23248	bcgsc.ca	37	1	150444253	150444253	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RPRD2	NM_015203	exon11	c.C2829A	p.N943K	.	.	71	5	78	0	.	23
RPS6KA5	9252	bcgsc.ca	37	14	91413828	91413828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RPS6KA5	NM_182398	exon4	c.T461C	p.V154A	.	.	60	4	39	0	.	979
RSBN1	54665	bcgsc.ca	37	1	114319917	114319917	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RSBN1	NM_018364	exon4	c.G1573T	p.D525Y	.	.	163	6	133	0	.	91
RTEL1	51750	ucsc.edu	37	20	62322251	62322251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RTEL1	NM_032957	exon27	c.C2579A	p.A860D	.	.	45	5	96	0	.	44
RUNDC1	146923	ucsc.edu;bcgsc.ca	37	17	41143616	41143616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RUNDC1	NM_173079	exon5	c.G1725T	p.M575I	.	.	27	4	27	0	.	90
RWDD3	25950	bcgsc.ca	37	1	95712118	95712118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RWDD3	NM_001199682	exon3	c.A547G	p.N183D	.	.	196	6	142	0	.	91
RYR3	6263	bcgsc.ca	37	15	34112963	34112963	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	RYR3	NM_001036	exon78	c.C10765A	p.Q3589K	.	.	124	6	82	0	.	520
SASH1	23328	bcgsc.ca	37	6	148808853	148808853	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SASH1	NM_015278	exon8	c.729+2T>A	.	.	.	41	4	40	0	.	90
SAYSD1	55776	ucsc.edu;bcgsc.ca	37	6	39082692	39082692	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_018322	exon1	c.C174A	p.P58P	.	.	25	4	29	0	.	.
SCAPER	49855	ucsc.edu;bcgsc.ca	37	15	77092703	77092703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCAPER	NM_020843	exon6	c.C497T	p.P166L	.	.	70	6	37	0	.	137
SCML1	6322	ucsc.edu;bcgsc.ca	37	X	17769993	17769993	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCML1	NM_001037540	exon7	c.C762T	p.H254H	.	.	49	4	44	0	.	290
SCN10A	6336	bcgsc.ca	37	3	38753905	38753905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN10A	NM_006514	exon22	c.C3836T	p.P1279L	.	.	68	5	49	0	.	99
SCN11A	11280	bcgsc.ca	37	3	38921526	38921526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN11A	NM_014139	exon19	c.T3308C	p.L1103P	.	.	79	4	58	0	.	99
SCN11A	11280	bcgsc.ca	37	3	38936337	38936337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN11A	NM_014139	exon15	c.G2522A	p.R841Q	.	.	115	5	83	0	.	99
SCN3B	55800	ucsc.edu;bcgsc.ca	37	11	123516373	123516373	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN3B	NM_018400	exon2	c.C141A	p.S47S	.	.	42	5	54	0	.	156
SCN9A	6335	bcgsc.ca	37	2	167055436	167055436	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCN9A	NM_002977	exon27	c.T5680C	p.L1894L	.	.	115	5	119	0	.	181
SCUBE3	222663	ucsc.edu;bcgsc.ca	37	6	35201068	35201068	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCUBE3	NM_152753	exon6	c.G702A	p.K234K	.	.	52	4	52	0	.	91
SCYL2	55681	bcgsc.ca	37	12	100706394	100706394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SCYL2	NM_017988	exon6	c.A815G	p.Q272R	.	.	76	4	43	0	.	336
SDR42E1	93517	bcgsc.ca	37	16	82033111	82033111	+	Missense_Mutation	SNP	A	A	G	rs182668480		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SDR42E1	NM_145168	exon3	c.T787C	p.F263L	.	.	20	4	22	0	A|0.999;G|0.001	90
SEC31A	22872	bcgsc.ca	37	4	83778878	83778878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SEC31A	NM_001077206	exon15	c.T1666C	p.S556P	.	.	128	5	81	0	.	268
SEMA3A	10371	bcgsc.ca	37	7	83590700	83590700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SEMA3A	NM_006080	exon17	c.C2303A	p.P768H	.	.	112	5	77	0	.	156
SEMA6A	57556	bcgsc.ca	37	5	115818212	115818212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SEMA6A	NM_020796	exon11	c.G1022T	p.G341V	.	.	107	5	95	0	.	92
SEMG2	6407	bcgsc.ca	37	20	43850450	43850450	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SEMG2	NM_003008	exon2	c.C177A	p.S59S	.	.	130	5	127	0	.	91
SERPINB5	5268	bcgsc.ca	37	18	61154247	61154247	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SERPINB5	NM_002639	exon3	c.A237G	p.K79K	.	.	90	4	68	0	.	651
SET	6418	bcgsc.ca	37	9	131455236	131455236	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SET	NM_001122821	exon5	c.C507A	p.T169T	.	.	278	7	225	0	.	658
SETBP1	26040	bcgsc.ca	37	18	42531822	42531822	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SETBP1	NM_015559	exon4	c.T2517C	p.P839P	.	.	16	3	20	0	.	155
SETD7	80854	bcgsc.ca	37	4	140450293	140450293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SETD7	NM_030648	exon4	c.A454G	p.R152G	.	.	102	4	86	0	.	91
SF3B2	10992	bcgsc.ca	37	11	65831176	65831176	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SF3B2	NM_006842	exon19	c.A2306G	p.K769R	.	.	62	4	62	0	.	92
SFMBT2	57713	bcgsc.ca	37	10	7218114	7218114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SFMBT2	NM_001029880	exon17	c.A1822G	p.T608A	.	.	72	4	74	1	.	141
SFMBT2	57713	bcgsc.ca	37	10	7262496	7262496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SFMBT2	NM_001029880	exon11	c.T1207C	p.S403P	.	.	65	4	48	0	.	141
SGCZ	137868	bcgsc.ca	37	8	14412345	14412345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SGCZ	NM_139167	exon2	c.T130C	p.W44R	.	.	200	7	172	0	.	93
SH3D21	79729	bcgsc.ca	37	1	36772024	36772024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SH3D21	NM_001162530	exon1	c.G3T	p.M1I	.	.	43	4	103	0	.	91
SH3TC2	79628	bcgsc.ca	37	5	148427446	148427446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SH3TC2	NM_024577	exon3	c.G258T	p.Q86H	.	.	65	4	53	0	.	92
SHROOM3	57619	bcgsc.ca	37	4	77476874	77476874	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SHROOM3	NM_020859	exon2	c.T281C	p.L94P	.	.	16	3	23	0	.	93
SIDT2	51092	bcgsc.ca	37	11	117064649	117064649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SIDT2	NM_001040455	exon24	c.C2292A	p.F764L	.	.	50	4	57	0	.	90
SIGLEC15	284266	bcgsc.ca	37	18	43422130	43422130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SIGLEC15	NM_213602	exon6	c.C965A	p.P322Q	.	.	50	4	87	1	.	90
SIGLEC1	6614	bcgsc.ca	37	20	3682237	3682237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SIGLEC1	NM_023068	exon6	c.T1280C	p.L427P	.	.	21	3	57	0	.	167
SIL1	64374	bcgsc.ca	37	5	138286892	138286892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SIL1	NM_001037633	exon10	c.G997T	p.V333F	.	.	68	4	69	0	.	90
SIN3B	23309	bcgsc.ca	37	19	16973248	16973248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SIN3B	NM_015260	exon9	c.G1144T	p.G382W	.	.	50	4	50	0	.	228
SLC12A1	6557	bcgsc.ca	37	15	48593518	48593518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC12A1	NM_001184832	exon26	c.C3103A	p.R1035S	.	.	64	4	51	0	.	24
SLC12A2	6558	bcgsc.ca	37	5	127503503	127503503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	SLC12A2,NS,carcinoma,0	SLC12A2	NM_001046	exon18	c.G2667T	p.K889N	.	.	71	4	66	1	.	94
SLC12A9	56996	broad.mit.edu;bcgsc.ca	37	7	100453360	100453360	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC12A9	NM_001267812	exon4	c.G349T	p.G117W	.	.	199	6	233	0	.	90
SLC13A4	26266	bcgsc.ca	37	7	135392971	135392971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC13A4	NM_012450	exon3	c.A256G	p.T86A	.	.	69	4	93	1	.	90
SLC16A7	9194	bcgsc.ca	37	12	60098709	60098709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC16A7	NM_001270622	exon3	c.T127C	p.F43L	.	.	105	5	61	0	.	91
SLC1A3	6507	ucsc.edu;bcgsc.ca	37	5	36684024	36684024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC1A3	NM_004172	exon9	c.A1348G	p.T450A	.	.	57	5	62	0	.	90
SLC20A1	6574	bcgsc.ca	37	2	113418775	113418775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC20A1	NM_005415	exon10	c.G1850T	p.G617V	.	.	84	5	78	0	.	92
SLC25A32	81034	bcgsc.ca	37	8	104413775	104413775	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC25A32	NM_030780	exon6	c.G781T	p.G261C	.	.	141	6	96	0	.	91
SLC27A3	11000	bcgsc.ca	37	1	153750279	153750279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC27A3	NM_024330	exon4	c.T1220C	p.F407S	.	.	52	4	71	0	.	91
SLC31A1	1317	bcgsc.ca	37	9	116021021	116021021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC31A1	NM_001859	exon4	c.G250A	p.E84K	.	.	130	5	119	0	.	90
SLC36A1	206358	bcgsc.ca	37	5	150844678	150844678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC36A1	NM_078483	exon5	c.G367A	p.G123R	.	.	75	4	79	0	.	91
SLC36A1	206358	bcgsc.ca	37	5	150856317	150856317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC36A1	NM_078483	exon9	c.G989T	p.W330L	.	.	59	5	49	0	.	91
SLC4A10	57282	bcgsc.ca	37	2	162751187	162751187	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC4A10	NM_001178015	exon11	c.1195-2A>G	.	.	.	49	4	30	0	.	229
SLC5A9	200010	bcgsc.ca	37	1	48705177	48705177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC5A9	NM_001135181	exon13	c.A1720G	p.S574G	.	.	94	5	114	0	.	93
SLC6A14	11254	bcgsc.ca	37	X	115582786	115582786	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC6A14	NM_007231	exon8	c.A1110G	p.G370G	.	.	145	6	63	0	.	133
SLC9A4	389015	bcgsc.ca	37	2	103130583	103130583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLC9A4	NM_001011552	exon8	c.A1594G	p.I532V	.	.	93	4	58	0	.	92
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111996688	111996688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_183061	exon5	c.C338T	p.P113L	.	.	227	28	126	0	.	.
SLCO2A1	6578	bcgsc.ca	37	3	133663998	133663998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLCO2A1	NM_005630	exon10	c.T1402C	p.S468P	.	.	70	5	41	0	.	90
SLIT3	6586	bcgsc.ca	37	5	168098314	168098314	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SLIT3	NM_001271946	exon34	c.A4037G	p.K1346R	.	.	63	4	101	0	.	95
SMARCA2	6595	bcgsc.ca	37	9	2115874	2115874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMARCA2	NM_139045	exon25	c.G3509T	p.R1170L	.	.	71	4	57	1	.	653
SMARCC2	6601	bcgsc.ca	37	12	56578647	56578647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMARCC2	NM_139067	exon5	c.A473G	p.D158G	.	.	85	4	82	0	.	229
SMC2	10592	bcgsc.ca	37	9	106876306	106876306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMC2	NM_006444	exon12	c.G1476T	p.L492F	.	.	99	5	71	0	.	210
SMCR8	140775	bcgsc.ca	37	17	18220402	18220402	+	Silent	SNP	G	G	T	rs146758728	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMCR8	NM_144775	exon1	c.G1299T	p.L433L	.	.	56	4	71	0	G|1.000;A|0.000	91
SMOC2	64094	bcgsc.ca	37	6	168910603	168910603	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMOC2	NM_022138	exon2	c.A93G	p.R31R	.	.	60	4	46	0	.	91
SMURF1	57154	bcgsc.ca	37	7	98643387	98643387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	SMURF1,upper_leg,malignant_melanoma,-1	SMURF1	NM_020429	exon12	c.A1268G	p.D423G	.	.	91	5	97	0	.	661
SMYD5	10322	ucsc.edu;bcgsc.ca	37	2	73447311	73447311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SMYD5	NM_006062	exon3	c.A338G	p.H113R	.	.	30	4	39	0	.	226
SNX1	6642	bcgsc.ca	37	15	64410404	64410404	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SNX1	NM_003099	exon3	c.A360G	p.E120E	.	.	71	4	72	0	.	226
SORT1	6272	bcgsc.ca	37	1	109859564	109859564	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SORT1	NM_002959	exon17	c.G2158T	p.G720W	.	.	111	5	102	0	.	91
SPATA16	83893	ucsc.edu	37	3	172694793	172694793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPATA16	NM_031955	exon5	c.G898T	p.E300X	.	.	43	4	34	0	.	94
SPECC1	92521	bcgsc.ca	37	17	20107712	20107712	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPECC1	NM_001033553	exon4	c.G350T	p.R117I	.	.	63	4	43	0	.	639
SPEF2	79925	bcgsc.ca	37	5	35763751	35763751	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPEF2	NM_024867	exon26	c.G3748A	p.E1250K	.	.	89	5	44	1	.	26
SPINK5	11005	bcgsc.ca	37	5	147506552	147506552	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPINK5	NM_001127698	exon31	c.A2964G	p.T988T	.	.	180	6	130	0	.	138
SPIRE1	56907	bcgsc.ca	37	18	12454430	12454430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPIRE1	NM_001128626	exon13	c.T1691C	p.M564T	.	.	99	5	102	0	.	90
SPON1	10418	bcgsc.ca	37	11	14264895	14264895	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPON1	.	.	.	.	.	.	70	4	58	0	.	1
SPOP	8405	ucsc.edu	37	17	47679339	47679339	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPOP	NM_001007228	exon9	c.G868T	p.E290X	.	.	33	4	40	0	.	660
SPP1	6696	ucsc.edu;bcgsc.ca	37	4	88901220	88901220	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPP1	NM_001251830	exon5	c.C155A	p.A52D	.	.	44	4	30	0	.	555
SPRTN	83932	bcgsc.ca	37	1	231488641	231488641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_032018	exon5	c.T1004C	p.V335A	.	.	62	4	59	0	.	.
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	2	54885138	54885138	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPTBN1	NM_003128	exon30	c.A6198G	p.A2066A	.	.	42	4	36	0	.	140
SPTBN4	57731	ucsc.edu	37	19	41060546	41060546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SPTBN4	NM_020971	exon24	c.C5078T	p.P1693L	.	.	47	4	50	0	.	94
SREK1	140890	bcgsc.ca	37	5	65459706	65459706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SREK1	NM_001077199	exon6	c.G842T	p.R281L	.	.	81	4	52	0	.	91
SRPK1	6732	bcgsc.ca	37	6	35888289	35888289	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SRPK1	NM_003137	exon2	c.C30T	p.A10A	.	.	92	5	91	0	.	359
SSH2	85464	bcgsc.ca	37	17	27994224	27994224	+	Missense_Mutation	SNP	C	C	A	rs150554358	alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SSH2	NM_033389	exon9	c.G746T	p.R249L	.	.	230	7	149	0	C|1.000;T|0.000	92
SSX2IP	117178	bcgsc.ca	37	1	85113284	85113284	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SSX2IP	NM_001166417	exon15	c.C1677A	p.I559I	.	.	132	6	89	0	.	92
ST3GAL1	6482	bcgsc.ca	37	8	134472010	134472010	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST3GAL1	NM_173344	exon10	c.A1020G	p.R340R	.	.	51	4	42	0	.	90
ST6GALNAC3	256435	bcgsc.ca	37	1	77094472	77094472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST6GALNAC3	NM_152996	exon5	c.C899A	p.P300Q	.	.	74	4	68	0	.	95
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	77528691	77528691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ST6GALNAC5	NM_030965	exon5	c.T811C	p.Y271H	.	.	117	12	89	0	.	92
STAC	6769	bcgsc.ca	37	3	36587757	36587757	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STAC	NM_003149	exon11	c.C1185A	p.P395P	.	.	81	6	61	0	.	94
STARD3NL	83930	bcgsc.ca	37	7	38259225	38259225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STARD3NL	NM_032016	exon7	c.G613T	p.D205Y	.	.	105	6	80	0	.	91
STMN4	81551	broad.mit.edu;bcgsc.ca	37	8	27097530	27097530	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STMN4	NM_030795	exon6	c.G549A	p.R183R	.	.	279	9	367	0	.	154
STRAP	11171	ucsc.edu;bcgsc.ca	37	12	16053885	16053885	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRAP	NM_007178	exon9	c.A930G	p.E310E	.	.	43	4	36	0	.	228
STRN3	29966	ucsc.edu;bcgsc.ca	37	14	31382855	31382855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STRN3	NM_001083893	exon10	c.A1249G	p.I417V	.	.	41	4	44	0	.	226
STXBP5L	9515	bcgsc.ca	37	3	121097634	121097634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STXBP5L	NM_014980	exon22	c.G2320A	p.D774N	.	.	56	4	49	0	.	77
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10775259	10775259	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	STYK1	NM_018423	exon9	c.G945T	p.L315L	.	.	132	15	89	0	.	1379
SUCO	51430	bcgsc.ca	37	1	172579141	172579141	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_014283	exon24	c.T3507C	p.T1169T	.	.	123	5	95	0	.	.
SULT1A2	6799	bcgsc.ca	37	16	28604788	28604788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SULT1A2	NM_001054	exon5	c.C474A	p.F158L	.	.	127	5	175	0	.	90
SVEP1	79987	bcgsc.ca	37	9	113221246	113221246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SVEP1	NM_153366	exon19	c.T3470C	p.I1157T	.	.	80	5	43	0	.	75
SYNPO2L	79933	bcgsc.ca	37	10	75406778	75406778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SYNPO2L	NM_001114133	exon4	c.T2632C	p.S878P	.	.	33	4	36	0	.	91
SYT3	84258	bcgsc.ca	37	19	51128700	51128700	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SYT3	NM_032298	exon6	c.C1524A	p.P508P	.	.	62	4	96	0	.	155
SYT4	6860	bcgsc.ca	37	18	40854139	40854139	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SYT4	NM_020783	exon2	c.A255G	p.P85P	.	.	132	6	114	0	.	132
SYTL2	54843	bcgsc.ca	37	11	85436976	85436976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	SYTL2	NM_206927	exon1	c.A524G	p.E175G	.	.	169	5	134	0	.	137
TACC2	10579	bcgsc.ca	37	10	123844186	123844186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TACC2	NM_206862	exon4	c.C2171A	p.P724Q	.	.	61	4	48	0	.	296
TAF1	6872	bcgsc.ca	37	X	70641212	70641212	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TAF1	NM_004606	exon29	c.G4498A	p.E1500K	.	.	47	6	36	0	.	900
TAF1B	9014	bcgsc.ca	37	2	10016056	10016056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TAF1B	NM_005680	exon7	c.A616G	p.I206V	.	.	75	4	50	0	.	92
TANC1	85461	ucsc.edu	37	2	160053125	160053125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TANC1	NM_033394	exon18	c.C2986A	p.H996N	.	.	49	4	42	0	.	92
TANC2	26115	bcgsc.ca	37	17	61498561	61498561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TANC2	NM_025185	exon25	c.A5218G	p.S1740G	.	.	69	4	68	0	.	24
TARS	6897	bcgsc.ca	37	5	33458762	33458762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TARS	NM_001258438	exon11	c.T1175C	p.F392S	.	.	119	5	70	0	.	92
TAX1BP1	8887	bcgsc.ca	37	7	27832833	27832833	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TAX1BP1	NM_001206901	exon10	c.1410+2T>A	.	.	.	64	5	34	0	.	153
TBCCD1	55171	ucsc.edu;bcgsc.ca	37	3	186272531	186272531	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBCCD1	NM_001134415	exon6	c.A1056G	p.T352T	.	.	38	4	38	0	.	108
TBK1	29110	bcgsc.ca	37	12	64883896	64883896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBK1	NM_013254	exon13	c.G1518T	p.L506F	.	.	180	6	150	0	.	1459
TBL1XR1	79718	bcgsc.ca	37	3	176763950	176763950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBL1XR1	NM_024665	exon10	c.G892T	p.G298C	.	.	142	6	93	0	.	187
TBL1XR1	79718	bcgsc.ca	37	3	176765324	176765324	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TBL1XR1	NM_024665	exon8	c.T716C	p.L239P	.	.	223	7	121	0	.	187
TCF12	6938	bcgsc.ca	37	15	57554327	57554327	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TCF12	NM_207036	exon17	c.T1503C	p.N501N	.	.	87	5	37	0	.	1085
TCP11L1	55346	bcgsc.ca	37	11	33080637	33080637	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TCP11L1	NM_001145541	exon6	c.A771G	p.Q257Q	.	.	117	5	85	0	.	90
TECTA	7007	bcgsc.ca	37	11	120996388	120996388	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TECTA	NM_005422	exon7	c.C1581T	p.L527L	.	.	49	4	58	0	.	225
TEK	7010	bcgsc.ca	37	9	27209132	27209132	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TEK	NM_000459	exon16	c.A2589G	p.K863K	.	.	50	4	40	0	.	1584
TENM1	10178	bcgsc.ca	37	X	123779165	123779165	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001163278	exon10	c.T1704C	p.G568G	.	.	42	4	47	0	.	.
TENM2	57451	bcgsc.ca	37	5	167675221	167675221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001122679	exon27	c.C7250T	p.T2417I	.	.	41	4	53	0	.	.
TEX36	387718	bcgsc.ca	37	10	127349619	127349619	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001128202	exon3	c.T235C	p.L79L	.	.	77	4	73	0	.	.
TFAP2A	7020	bcgsc.ca	37	6	10407063	10407063	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TFAP2A	NM_003220	exon3	c.G495T	p.P165P	.	.	66	5	74	0	.	91
TFB2M	64216	ucsc.edu	37	1	246711865	246711865	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TFB2M	NM_022366	exon6	c.G840A	p.L280L	.	.	37	4	21	0	.	91
TFDP1	7027	bcgsc.ca	37	13	114288251	114288251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TFDP1	NM_007111	exon7	c.A521G	p.N174S	.	.	35	5	49	0	.	416
TFPI	7035	bcgsc.ca	37	2	188361699	188361699	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TFPI	NM_001032281	exon3	c.T228C	p.T76T	.	.	102	6	61	1	.	91
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39880779	39880779	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	THBS1	NM_003246	exon10	c.T1524C	p.C508C	.	.	43	4	31	0	.	653
TICRR	90381	bcgsc.ca	37	15	90145006	90145006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_152259	exon12	c.A2366G	p.Y789C	.	.	70	4	51	0	.	.
TIGD4	201798	bcgsc.ca	37	4	153691871	153691871	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIGD4	NM_145720	exon2	c.C286A	p.R96R	.	.	83	4	51	0	.	91
TIGIT	201633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	114018501	114018501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIGIT	NM_173799	exon3	c.T449C	p.L150P	.	.	35	7	33	0	.	90
TIMELESS	8914	ucsc.edu;bcgsc.ca	37	12	56814376	56814376	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TIMELESS	NM_003920	exon26	c.G3205C	p.V1069L	.	.	83	9	100	0	.	159
TJP2	9414	bcgsc.ca	37	9	71861639	71861639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TJP2	NM_001170416	exon18	c.G2693T	p.W898L	.	.	101	4	93	0	.	115
TLE3	7090	bcgsc.ca	37	15	70346831	70346831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLE3	NM_005078	exon16	c.G1781T	p.C594F	.	.	62	4	82	0	.	522
TLE4	7091	ucsc.edu;bcgsc.ca	37	9	82334962	82334962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLE4	NM_007005	exon16	c.A1592G	p.N531S	.	.	43	4	39	0	.	524
TLE6	79816	ucsc.edu	37	19	2989588	2989588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLE6	NM_001143986	exon13	c.T1049C	p.L350P	.	.	49	4	46	0	.	91
TLR1	7096	bcgsc.ca	37	4	38800068	38800068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLR1	NM_003263	exon4	c.C385A	p.L129M	.	.	77	4	52	0	.	524
TLX3	30012	bcgsc.ca	37	5	170737375	170737375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TLX3	NM_021025	exon2	c.C643A	p.Q215K	.	.	55	5	91	0	.	658
TM2D2	83877	bcgsc.ca	37	8	38849029	38849029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM2D2	NM_078473	exon4	c.A467T	p.Y156F	.	.	95	5	90	1	.	90
TM4SF5	9032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4686278	4686278	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM4SF5	NM_003963	exon4	c.C525T	p.I175I	.	.	73	20	106	0	.	91
TM9SF4	9777	bcgsc.ca	37	20	30730837	30730837	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TM9SF4	NM_014742	exon6	c.T581C	p.M194T	.	.	134	5	152	0	.	514
TMEM117	84216	bcgsc.ca	37	12	44782028	44782028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM117	NM_032256	exon8	c.C1118T	p.T373I	.	.	73	4	70	0	.	90
TMEM133	83935	bcgsc.ca	37	11	100863085	100863085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM133	NM_032021	exon1	c.T46C	p.S16P	.	.	101	5	83	0	.	90
TMEM189	387521	bcgsc.ca	37	20	48746089	48746089	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM189	NM_199129	exon4	c.A472T	p.S158C	.	.	55	6	66	0	.	22
TMEM205	374882	ucsc.edu;bcgsc.ca	37	19	11453629	11453629	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM205	NM_033408	exon4	c.A432G	p.R144R	.	.	61	6	120	0	.	22
TMEM2	23670	bcgsc.ca	37	9	74360422	74360422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM2	NM_001135820	exon4	c.G546T	p.Q182H	.	.	57	4	42	0	.	92
TMEM243	79161	broad.mit.edu;bcgsc.ca	37	7	86826043	86826043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_024315	exon4	c.C266T	p.P89L	.	.	59	6	28	0	.	.
TMEM99	147184	bcgsc.ca	37	17	38991470	38991470	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMEM99	NM_001195386	exon3	c.A702T	p.L234F	.	.	111	6	73	0	.	91
TMOD2	29767	bcgsc.ca	37	15	52058693	52058693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMOD2	NM_014548	exon2	c.G55A	p.E19K	.	.	55	4	53	1	.	92
TMPPE	643853	ucsc.edu;bcgsc.ca	37	3	33135113	33135113	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMPPE	NM_001039770	exon2	c.C575A	p.T192N	.	.	49	5	45	0	.	90
TMPRSS13	84000	bcgsc.ca	37	11	117784495	117784495	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMPRSS13	NM_001206790	exon5	c.A806G	p.E269G	.	.	26	4	33	0	.	91
TMPRSS6	164656	bcgsc.ca	37	22	37494485	37494485	+	Missense_Mutation	SNP	G	G	T	rs113803353	byfrequency;alternate_allele	TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TMPRSS6	NM_153609	exon3	c.C334A	p.R112S	.	.	101	5	125	1	G|0.997;A|0.003	292
TNFSF10	8743	bcgsc.ca	37	3	172227013	172227013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNFSF10	NM_003810	exon4	c.T412C	p.S138P	.	.	141	5	94	0	.	662
TNN	63923	ucsc.edu;bcgsc.ca	37	1	175097282	175097282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNN	NM_022093	exon14	c.T3160C	p.S1054P	.	.	36	4	40	0	.	138
TNRC18	84629	bcgsc.ca	37	7	5414102	5414102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNRC18	NM_001080495	exon10	c.A2813G	p.K938R	.	.	34	4	56	1	.	46
TNS3	64759	ucsc.edu	37	7	47408016	47408016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TNS3	NM_022748	exon17	c.A2227G	p.S743G	.	.	25	3	26	0	.	94
TOPBP1	11073	ucsc.edu;bcgsc.ca	37	3	133331301	133331301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TOPBP1	NM_007027	exon24	c.G3967T	p.A1323S	.	.	43	4	38	0	.	540
TOX4	9878	bcgsc.ca	37	14	21957529	21957529	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TOX4	NM_014828	exon5	c.C777A	p.S259S	.	.	118	5	85	0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7577531	7577531	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	TP53,NS,carcinoma,-1	TP53	NM_000546	exon7	c.750delC	p.P250fs	.	.	354	91	108	0	.	70225
TP73-AS1	57212	ucsc.edu	37	1	3659756	3659756	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NR_033709	exon3	c.1768-2A>G	.	.	.	34	4	33	0	.	.
TRABD2A	129293	bcgsc.ca	37	2	85049055	85049055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001080824	exon6	c.A1357G	p.R453G	.	.	51	4	39	0	.	.
TREM1	54210	bcgsc.ca	37	6	41250310	41250310	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TREM1	NM_001242590	exon2	c.T229C	p.S77P	.	.	163	6	174	3	.	577
TRERF1	55809	bcgsc.ca	37	6	42237008	42237008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRERF1	NM_033502	exon5	c.G321A	p.M107I	.	.	33	4	38	0	.	230
TRHDE	29953	bcgsc.ca	37	12	73050720	73050720	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRHDE	NM_013381	exon18	c.T2863C	p.L955L	.	.	157	6	75	0	.	93
TRIM33	51592	bcgsc.ca	37	1	114964231	114964231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIM33	NM_033020	exon11	c.T1888C	p.F630L	.	.	281	7	227	0	.	1351
TRIM33	51592	bcgsc.ca	37	1	114967221	114967221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIM33	NM_033020	exon10	c.C1852A	p.Q618K	.	.	59	4	36	0	.	1351
TRIM41	90933	bcgsc.ca	37	5	180660715	180660715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIM41	NM_201627	exon5	c.G1243T	p.D415Y	.	.	64	4	100	0	.	226
TRIM51	84767	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55657422	55657422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_032681	exon6	c.G766A	p.E256K	.	.	234	23	185	1	.	.
TRIM58	25893	bcgsc.ca	37	1	248039658	248039658	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIM58	NM_015431	exon6	c.T1328C	p.L443P	.	.	177	6	154	0	.	96
TRIP12	9320	bcgsc.ca	37	2	230643607	230643607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIP12	NM_004238	exon34	c.C4969A	p.L1657I	.	.	65	4	57	0	.	572
TRIP12	9320	bcgsc.ca	37	2	230668319	230668319	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIP12	NM_004238	exon19	c.C2741A	p.P914H	.	.	104	4	88	0	.	572
TRIP12	9320	bcgsc.ca	37	2	230668762	230668762	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIP12	NM_004238	exon18	c.G2607A	p.A869A	.	.	112	5	76	0	.	572
TRIP12	9320	bcgsc.ca	37	2	230678973	230678973	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRIP12	NM_004238	exon11	c.A1656G	p.R552R	.	.	111	5	101	0	.	572
TRMT44	152992	bcgsc.ca	37	4	8469702	8469702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_152544	exon9	c.A1556G	p.K519R	.	.	96	5	102	0	.	.
TROVE2	6738	bcgsc.ca	37	1	193038596	193038596	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TROVE2	NM_004600	exon2	c.A412G	p.S138G	.	.	135	5	105	0	.	115
TRPA1	8989	bcgsc.ca	37	8	72945904	72945904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPA1	NM_007332	exon23	c.T2843C	p.V948A	.	.	63	4	35	0	.	230
TRPC4AP	26133	bcgsc.ca	37	20	33637736	33637736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPC4AP	NM_199368	exon6	c.T590C	p.L197S	.	.	75	4	64	0	.	91
TRPC6	7225	ucsc.edu;bcgsc.ca	37	11	101353776	101353776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPC6	NM_004621	exon5	c.C1414A	p.P472T	.	.	97	10	66	0	.	93
TRPM2	7226	ucsc.edu	37	21	45825043	45825043	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPM2	NM_003307	exon17	c.G2557T	p.E853X	.	.	43	4	41	0	.	92
TRPM5	29850	bcgsc.ca	37	11	2433478	2433478	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPM5	NM_014555	exon16	c.C2361T	p.F787F	.	.	20	4	29	0	.	137
TRPV6	55503	ucsc.edu	37	7	142583144	142583144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRPV6	NM_018646	exon1	c.C118A	p.Q40K	.	.	49	4	48	0	.	92
TRRAP	8295	ucsc.edu	37	7	98579453	98579453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TRRAP	NM_001244580	exon58	c.C8675T	p.A2892V	.	.	42	5	48	0	.	923
TSPAN18	90139	ucsc.edu;bcgsc.ca	37	11	44939590	44939590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TSPAN18	NM_130783	exon5	c.G326T	p.R109M	.	.	31	4	24	0	.	68
TSPAN31	6302	bcgsc.ca	37	12	58140445	58140445	+	Missense_Mutation	SNP	G	G	A	rs150788963		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TSPAN31	NM_005981	exon4	c.G386A	p.C129Y	.	.	121	6	75	0	G|1.000;A|0.000	446
TSSK6	83983	bcgsc.ca	37	19	19625697	19625697	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TSSK6	NM_032037	exon1	c.C540A	p.P180P	.	.	11	3	32	0	.	333
TTBK2	146057	ucsc.edu;bcgsc.ca	37	15	43067421	43067421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTBK2	NM_173500	exon13	c.T1910C	p.L637P	.	.	42	6	45	0	.	338
TTC17	55761	bcgsc.ca	37	11	43428722	43428722	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTC17	NM_018259	exon14	c.C1796A	p.P599Q	.	.	65	4	41	0	.	95
TTC29	83894	bcgsc.ca	37	4	147755015	147755015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTC29	NM_031956	exon9	c.T920C	p.L307P	.	.	50	4	39	0	.	90
TTF2	8458	bcgsc.ca	37	1	117617800	117617800	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTF2	NM_003594	exon5	c.G594T	p.E198D	.	.	154	5	102	0	.	91
TTI1	9675	bcgsc.ca	37	20	36639946	36639946	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTI1	NM_014657	exon3	c.G2273T	p.S758I	.	.	53	4	37	0	.	94
TTLL1	25809	bcgsc.ca	37	22	43464510	43464510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTLL1	NM_012263	exon5	c.A409G	p.M137V	.	.	73	5	58	0	.	92
TTLL2	83887	bcgsc.ca	37	6	167755086	167755086	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTLL2	NM_031949	exon3	c.T1698C	p.T566T	.	.	59	4	55	0	.	92
TTN	7273	bcgsc.ca	37	2	179411445	179411445	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon341	c.C94710A	p.T31570T	.	.	85	7	73	0	.	636
TTN	7273	bcgsc.ca	37	2	179419842	179419842	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon331	c.A88344G	p.E29448E	.	.	69	4	69	0	.	636
TTN	7273	bcgsc.ca	37	2	179431918	179431918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon326	c.A78941G	p.D26314G	.	.	56	4	57	0	.	636
TTN	7273	bcgsc.ca	37	2	179441432	179441432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon325	c.A69539G	p.E23180G	.	.	203	7	209	1	.	636
TTN	7273	bcgsc.ca	37	2	179458305	179458305	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon298	c.A58722G	p.K19574K	.	.	72	4	50	0	.	636
TTN	7273	bcgsc.ca	37	2	179543473	179543473	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001256850	exon142	c.32875+1G>T	.	.	.	188	7	109	0	.	636
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179416798	179416798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TTN	NM_001267550	exon335	c.T90829C	p.S30277P	.	.	116	6	102	0	.	636
TULP1	7287	bcgsc.ca	37	6	35477062	35477062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TULP1	NM_003322	exon8	c.A746G	p.E249G	.	.	87	7	92	0	.	92
TULP4	56995	bcgsc.ca	37	6	158919714	158919714	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TULP4	NM_020245	exon12	c.C1884A	p.T628T	.	.	114	6	105	0	.	91
TXLNG	55787	bcgsc.ca	37	X	16836808	16836808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	TXLNG	NM_018360	exon2	c.G214T	p.G72C	.	.	131	6	98	0	.	130
UBA3	9039	bcgsc.ca	37	3	69105800	69105800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBA3	NM_003968	exon14	c.A1046G	p.D349G	.	.	306	8	203	2	.	227
UBE2B	7320	bcgsc.ca	37	5	133725925	133725925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBE2B	NM_003337	exon6	c.G340T	p.D114Y	.	.	56	4	44	0	.	659
UBN1	29855	bcgsc.ca	37	16	4920899	4920899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBN1	NM_001079514	exon11	c.G1485T	p.E495D	.	.	74	4	83	0	.	92
UBR3	130507	bcgsc.ca	37	2	170850948	170850948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBR3	NM_172070	exon26	c.A3900T	p.L1300F	.	.	108	6	56	0	.	68
UBR4	23352	bcgsc.ca	37	1	19426142	19426142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBR4	NM_020765	exon90	c.G13251T	p.L4417F	.	.	60	4	61	0	.	612
UBR5	51366	bcgsc.ca	37	8	103305960	103305960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UBR5	NM_015902	exon34	c.A4462G	p.M1488V	.	.	83	4	47	0	.	761
UCK2	7371	broad.mit.edu;ucsc.edu	37	1	165859537	165859537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UCK2	NM_012474	exon2	c.C196T	p.R66C	.	.	69	5	77	0	.	91
UHRF1BP1L	23074	bcgsc.ca	37	12	100451419	100451419	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UHRF1BP1L	NM_015054	exon15	c.T3354C	p.L1118L	.	.	92	4	71	0	.	24
UNC13C	440279	bcgsc.ca	37	15	54793035	54793035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UNC13C	NM_001080534	exon20	c.C5160A	p.F1720L	.	.	92	4	60	0	.	51
UNC79	57578	bcgsc.ca	37	14	94139750	94139750	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020818	exon42	c.C6276A	p.A2092A	.	.	96	6	89	0	.	.
UNC79	57578	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94173201	94173201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020818	exon50	c.A7328G	p.Q2443R	.	.	68	7	63	0	.	.
UPP2	151531	bcgsc.ca	37	2	158851740	158851740	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	UPP2	NM_001135098	exon1	c.A30G	p.P10P	.	.	70	4	39	0	.	90
URB1	9875	bcgsc.ca	37	21	33691693	33691693	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_014825	exon36	c.A5626G	p.I1876V	.	.	56	4	55	0	.	.
URM1	81605	ucsc.edu	37	9	131151556	131151556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	URM1	NM_030914	exon4	c.G205A	p.V69M	.	.	24	3	26	0	.	90
USF1	7391	bcgsc.ca	37	1	161010622	161010622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USF1	NM_001276373	exon8	c.A601G	p.R201G	.	.	98	5	81	0	.	516
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216538320	216538320	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USH2A	NM_007123	exon4	c.T759C	p.T253T	.	.	110	18	74	0	.	115
USP15	9958	bcgsc.ca	37	12	62798102	62798102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP15	NM_001252078	exon22	c.A2893G	p.S965G	.	.	85	5	63	0	.	1084
USP27X	389856	bcgsc.ca	37	X	49645624	49645624	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP27X	NM_001145073	exon1	c.C714A	p.T238T	.	.	45	4	56	0	.	472
USP34	9736	bcgsc.ca	37	2	61647956	61647956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP34	NM_014709	exon2	c.A56G	p.E19G	.	.	99	5	46	0	.	579
USP49	25862	broad.mit.edu	37	6	41767648	41767648	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP49	NM_018561	exon6	c.C1590A	p.P530P	.	.	382	11	344	0	.	523
USP8	9101	bcgsc.ca	37	15	50790921	50790921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP8	NM_001128610	exon19	c.T3167C	p.V1056A	.	.	129	7	96	0	.	658
USP9X	8239	bcgsc.ca	37	X	41000344	41000344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP9X	NM_001039591	exon8	c.A896G	p.K299R	.	.	68	4	40	0	.	563
USP9X	8239	bcgsc.ca	37	X	41055863	41055863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	USP9X	NM_001039591	exon28	c.G4105T	p.A1369S	.	.	110	6	102	1	.	563
VCAN	1462	bcgsc.ca	37	5	82816081	82816081	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VCAN	NM_004385	exon7	c.A1956G	p.E652E	.	.	98	4	60	0	.	238
VCAN	1462	bcgsc.ca	37	5	82833565	82833565	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VCAN	NM_004385	exon8	c.A4743G	p.T1581T	.	.	63	5	41	0	.	238
VEGFC	7424	bcgsc.ca	37	4	177605129	177605129	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VEGFC	NM_005429	exon7	c.A1211G	p.E404G	.	.	66	5	45	0	.	710
VEGFC	7424	bcgsc.ca	37	4	177650761	177650761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VEGFC	NM_005429	exon2	c.A287G	p.Q96R	.	.	131	5	121	0	.	710
VGLL3	389136	bcgsc.ca	37	3	87018023	87018023	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VGLL3	NM_016206	exon3	c.C654A	p.S218S	.	.	57	5	73	1	.	90
VPS13C	54832	bcgsc.ca	37	15	62214228	62214228	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VPS13C	NM_020821	exon55	c.A6980G	p.H2327R	.	.	88	4	62	0	.	92
VPS13D	55187	bcgsc.ca	37	1	12338062	12338062	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VPS13D	NM_015378	exon19	c.C4417T	p.H1473Y	.	.	57	4	61	0	.	95
VPS37A	137492	bcgsc.ca	37	8	17126425	17126425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VPS37A	NM_152415	exon4	c.A376G	p.N126D	.	.	84	4	63	0	.	90
VPS4B	9525	bcgsc.ca	37	18	61064376	61064376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VPS4B	NM_004869	exon9	c.A983G	p.E328G	.	.	78	6	71	1	.	91
VWF	7450	bcgsc.ca	37	12	6121267	6121267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	VWF	NM_000552	exon33	c.G5650T	p.G1884W	.	.	236	7	202	0	.	163
WDPCP	51057	bcgsc.ca	37	2	63609172	63609172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDPCP	NM_015910	exon11	c.G1493A	p.C498Y	.	.	57	4	39	0	.	91
WDR17	116966	bcgsc.ca	37	4	177098784	177098784	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR17	NM_170710	exon30	c.T3828C	p.C1276C	.	.	135	5	95	0	.	95
WDR26	80232	broad.mit.edu;bcgsc.ca	37	1	224588723	224588723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR26	NM_025160	exon9	c.A1348G	p.T450A	.	.	64	5	59	0	.	90
WDR44	54521	bcgsc.ca	37	X	117529306	117529306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR44	NM_001184965	exon6	c.A1052G	p.E351G	.	.	140	5	88	0	.	133
WDR66	144406	bcgsc.ca	37	12	122380862	122380862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR66	NM_001178003	exon7	c.C1172T	p.P391L	.	.	66	5	70	0	.	92
WDR72	256764	bcgsc.ca	37	15	53901776	53901776	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WDR72	NM_182758	exon17	c.C2886T	p.S962S	.	.	73	4	55	0	.	92
WHSC1	7468	bcgsc.ca	37	4	1920005	1920005	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WHSC1	NM_133335	exon5	c.C1065A	p.L355L	.	.	86	5	81	0	.	664
WIPI2	26100	ucsc.edu;bcgsc.ca	37	7	5256804	5256804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WIPI2	NM_015610	exon6	c.G562A	p.D188N	.	.	37	4	55	0	.	516
WSCD2	9671	bcgsc.ca	37	12	108620922	108620922	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	WSCD2	NM_014653	exon6	c.G960A	p.V320V	.	.	40	5	34	0	.	136
XAGE3	170626	bcgsc.ca	37	X	52891668	52891668	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XAGE3	NM_133179	exon5	c.T315C	p.G105G	.	.	183	6	142	0	.	130
XPO6	23214	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28167768	28167768	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XPO6	NM_015171	exon7	c.A724T	p.S242C	.	.	51	9	53	0	.	227
XPO7	23039	bcgsc.ca	37	8	21846576	21846576	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XPO7	NM_015024	exon16	c.T1850C	p.L617P	.	.	57	4	71	1	.	273
XRN1	54464	bcgsc.ca	37	3	142030508	142030508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	XRN1	NM_019001	exon42	c.T4966C	p.S1656P	.	.	121	5	77	0	.	93
YEATS2	55689	bcgsc.ca	37	3	183436369	183436369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	YEATS2	NM_018023	exon4	c.A280G	p.K94E	.	.	66	4	67	0	.	138
YLPM1	56252	broad.mit.edu;bcgsc.ca	37	14	75266169	75266169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	YLPM1	NM_019589	exon5	c.T4169C	p.V1390A	.	.	121	8	115	0	.	71
YWHAQ	10971	ucsc.edu	37	2	9770480	9770480	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	YWHAQ	NM_006826	exon2	c.C102T	p.A34A	.	.	41	5	48	0	.	658
ZBTB24	9841	bcgsc.ca	37	6	109788892	109788892	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZBTB24	NM_014797	exon6	c.C1334T	p.A445V	.	.	64	4	54	0	.	92
ZBTB34	403341	bcgsc.ca	37	9	129642801	129642801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZBTB34	NM_001099270	exon2	c.A1111G	p.R371G	.	.	46	4	34	0	.	69
ZC3H15	55854	bcgsc.ca	37	2	187371443	187371443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZC3H15	NM_018471	exon9	c.G970T	p.D324Y	.	.	52	4	29	0	.	91
ZC3H4	23211	bcgsc.ca	37	19	47570700	47570700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZC3H4	NM_015168	exon15	c.A2825G	p.D942G	.	.	34	5	53	0	.	74
ZC3H7A	29066	bcgsc.ca	37	16	11856587	11856587	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZC3H7A	NM_014153	exon17	c.T2019C	p.A673A	.	.	60	4	36	0	.	94
ZC3HAV1L	92092	bcgsc.ca	37	7	138711479	138711479	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZC3HAV1L	NM_080660	exon4	c.T861C	p.A287A	.	.	49	4	39	0	.	90
ZC4H2	55906	bcgsc.ca	37	X	64141783	64141783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZC4H2	NM_018684	exon2	c.G139A	p.E47K	.	.	96	4	90	0	.	131
ZCCHC14	23174	bcgsc.ca	37	16	87446341	87446341	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZCCHC14	NM_015144	exon12	c.C1575T	p.L525L	.	.	86	6	108	1	.	154
ZDBF2	57683	bcgsc.ca	37	2	207171461	207171461	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZDBF2	NM_020923	exon5	c.G2209T	p.D737Y	.	.	57	5	42	1	.	3
ZFP28	140612	ucsc.edu	37	19	57061479	57061479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZFP28	NM_020828	exon6	c.A731G	p.Q244R	.	.	48	4	61	0	.	91
ZFPL1	7542	ucsc.edu;bcgsc.ca	37	11	64854053	64854053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZFPL1	NM_006782	exon4	c.G381T	p.W127C	.	.	45	5	85	0	.	91
ZFYVE16	9765	bcgsc.ca	37	5	79738976	79738976	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZFYVE16	NM_001105251	exon6	c.T2454C	p.G818G	.	.	131	5	67	0	.	90
ZKSCAN4	387032	bcgsc.ca	37	6	28214784	28214784	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZKSCAN4	NM_019110	exon4	c.T741C	p.D247D	.	.	66	4	66	0	.	91
ZMAT1	84460	bcgsc.ca	37	X	101138575	101138575	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZMAT1	NM_001011657	exon7	c.A1824G	p.K608K	.	.	166	6	117	0	.	131
ZMYM4	9202	bcgsc.ca	37	1	35873753	35873753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZMYM4	NM_005095	exon26	c.T3941C	p.I1314T	.	.	60	4	44	0	.	291
ZMYND15	84225	bcgsc.ca	37	17	4647520	4647520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZMYND15	NM_001136046	exon9	c.A1531G	p.K511E	.	.	65	4	92	0	.	90
ZNF131	7690	bcgsc.ca	37	5	43175138	43175138	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF131	NM_003432	exon8	c.A1673G	p.H558R	.	.	118	5	88	0	.	90
ZNF133	7692	ucsc.edu;bcgsc.ca	37	20	18296815	18296815	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF133	NM_001083330	exon4	c.T1317C	p.C439C	.	.	34	4	54	0	.	92
ZNF142	7701	bcgsc.ca	37	2	219515103	219515103	+	Missense_Mutation	SNP	G	G	T	rs181627115		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF142	NM_001105537	exon5	c.C427A	p.Q143K	.	.	83	6	71	1	G|0.999;T|0.001	137
ZNF207	7756	ucsc.edu	37	17	30692500	30692500	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF207	NM_001098507	exon8	c.T822C	p.A274A	.	.	46	4	36	0	.	90
ZNF211	10520	bcgsc.ca	37	19	58153437	58153437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF211	NM_001265597	exon5	c.G1778A	p.R593H	.	.	51	4	32	0	.	92
ZNF214	7761	bcgsc.ca	37	11	7021225	7021225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF214	NM_013249	exon3	c.C1689A	p.F563L	.	.	100	5	60	0	.	91
ZNF227	7770	bcgsc.ca	37	19	44740254	44740254	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF227	NM_182490	exon6	c.C1671T	p.F557F	.	.	62	4	48	0	.	91
ZNF229	7772	bcgsc.ca	37	19	44933516	44933516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF229	NM_014518	exon6	c.G1440T	p.Q480H	.	.	57	4	69	0	.	94
ZNF232	7775	bcgsc.ca	37	17	5013065	5013065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF232	NM_014519	exon3	c.A122G	p.Q41R	.	.	80	4	92	0	.	154
ZNF251	90987	bcgsc.ca	37	8	145948439	145948439	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF251	NM_138367	exon5	c.T606C	p.N202N	.	.	146	5	90	0	.	68
ZNF280C	55609	bcgsc.ca	37	X	129339105	129339105	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF280C	NM_017666	exon18	c.T2184C	p.S728S	.	.	57	4	39	0	.	132
ZNF395	55893	ucsc.edu;bcgsc.ca	37	8	28218433	28218433	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF395	NM_018660	exon2	c.T209C	p.L70P	.	.	24	4	33	0	.	90
ZNF419	79744	bcgsc.ca	37	19	58004605	58004605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF419	NM_001098491	exon5	c.G683T	p.G228V	.	.	72	5	81	0	.	90
ZNF423	23090	ucsc.edu	37	16	49670319	49670319	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF423	NM_015069	exon4	c.A2744G	p.E915G	.	.	46	5	53	1	.	228
ZNF433	163059	bcgsc.ca	37	19	12125870	12125870	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001080411	exon4	c.A1812G	p.R604R	.	.	72	4	65	0	.	.
ZNF43	7594	ucsc.edu	37	19	21991273	21991273	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF43	NM_001256653	exon4	c.C1593A	p.S531S	.	.	25	4	16	0	.	154
ZNF470	388566	bcgsc.ca	37	19	57089876	57089876	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF470	NM_001001668	exon6	c.T2079C	p.A693A	.	.	75	5	50	0	.	92
ZNF485	220992	bcgsc.ca	37	10	44112126	44112126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF485	NM_145312	exon5	c.A635G	p.K212R	.	.	26	4	46	0	.	90
ZNF518B	85460	bcgsc.ca	37	4	10447866	10447866	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF518B	NM_053042	exon3	c.T87A	p.A29A	.	.	84	5	71	0	.	72
ZNF543	125919	ucsc.edu;bcgsc.ca	37	19	57840605	57840605	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF543	NM_213598	exon4	c.A1775G	p.N592S	.	.	30	4	36	0	.	92
ZNF549	256051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58048901	58048901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF549	NM_001199295	exon4	c.C529A	p.L177M	.	.	58	6	47	0	.	91
ZNF567	163081	bcgsc.ca	37	19	37211549	37211549	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF567	NM_152603	exon4	c.A1830G	p.G610G	.	.	95	5	52	0	.	90
ZNF569	148266	bcgsc.ca	37	19	37904266	37904266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF569	NM_152484	exon6	c.C1294A	p.H432N	.	.	117	5	91	0	.	154
ZNF572	137209	bcgsc.ca	37	8	125989770	125989770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF572	NM_152412	exon3	c.T1260C	p.T420T	.	.	68	4	42	0	.	154
ZNF573	126231	bcgsc.ca	37	19	38262291	38262291	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF573	NM_001172690	exon3	c.C115A	p.R39R	.	.	73	6	80	0	.	91
ZNF584	201514	bcgsc.ca	37	19	58928785	58928785	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF584	NM_173548	exon4	c.T900C	p.C300C	.	.	60	4	68	0	.	90
ZNF596	169270	bcgsc.ca	37	8	196288	196288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF596	NM_173539	exon6	c.G1441T	p.G481W	.	.	46	4	46	0	.	90
ZNF701	55762	bcgsc.ca	37	19	53085871	53085871	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF701	NM_001172655	exon5	c.C757A	p.R253S	.	.	74	4	57	0	.	90
ZNF70	7621	bcgsc.ca	37	22	24086556	24086556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF70	NM_021916	exon2	c.G772T	p.G258W	.	.	69	4	84	0	.	92
ZNF709	163051	bcgsc.ca	37	19	12576261	12576261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF709	NM_152601	exon4	c.G475A	p.E159K	.	.	79	4	80	0	.	90
ZNF721	170960	bcgsc.ca	37	4	435610	435610	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF721	NM_133474	exon3	c.G2646A	p.G882G	.	.	32	4	29	0	.	47
ZNF746	155061	bcgsc.ca	37	7	149172157	149172157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF746	NM_001163474	exon7	c.C1256A	p.P419Q	.	.	52	4	68	2	.	155
ZNF777	27153	bcgsc.ca	37	7	149153075	149153075	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF777	NM_015694	exon2	c.T39C	p.S13S	.	.	91	6	83	0	.	136
ZNF804A	91752	bcgsc.ca	37	2	185463770	185463770	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZNF804A	NM_194250	exon1	c.T84C	p.P28P	.	.	82	5	72	0	.	163
ZNF883	169834	bcgsc.ca	37	9	115759773	115759773	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_001101338	exon5	c.A767G	p.Q256R	.	.	100	5	73	0	.	.
ZRSR2	8233	bcgsc.ca	37	X	15822306	15822306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZRSR2	NM_005089	exon5	c.A385G	p.K129E	.	.	226	7	166	2	.	133
ZSCAN29	146050	bcgsc.ca	37	15	43661880	43661880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZSCAN29	NM_152455	exon1	c.G232A	p.V78I	.	.	76	4	78	0	.	91
ZSWIM2	151112	bcgsc.ca	37	2	187703855	187703855	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZSWIM2	NM_182521	exon4	c.T325C	p.L109L	.	.	147	6	80	0	.	93
ZSWIM6	57688	bcgsc.ca	37	5	60827495	60827495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020928	exon9	c.G2188A	p.E730K	.	.	76	4	61	0	.	.
ZSWIM6	57688	bcgsc.ca	37	5	60834800	60834800	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	.	NM_020928	exon11	c.2539+2T>C	.	.	.	73	5	65	0	.	.
ZSWIM7	125150	bcgsc.ca	37	17	15884382	15884382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZSWIM7	NM_001042697	exon4	c.C278T	p.S93L	.	.	63	4	75	0	.	22
ZYX	7791	ucsc.edu;bcgsc.ca	37	7	143087737	143087737	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZYX	NM_003461	exon10	c.C1681A	p.L561I	.	.	36	4	36	0	.	90
ZZZ3	26009	bcgsc.ca	37	1	78098330	78098330	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25V-01A-11D-A16V-10	TCGA-G3-A25V-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	4624fd20-e2ad-4826-b606-a694b04e1076	eac002f0-7695-4df1-8ff0-2c5c976279df	.	ZZZ3	NM_015534	exon5	c.A710G	p.K237R	.	.	99	5	98	0	.	157
