Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	bcgsc.ca	37	17	67178897	67178897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA10	NM_080282	exon22	c.G2550T	p.L850F	.	.	324	8	293	0	.	93
ABCA1	19	bcgsc.ca	37	9	107602617	107602617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA1	NM_005502	exon9	c.C997A	p.L333I	.	.	80	4	99	0	.	1016
ABCA13	154664	bcgsc.ca	37	7	48237920	48237920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA13	NM_152701	exon3	c.A250G	p.N84D	.	.	85	4	46	0	.	521
ABCA13	154664	bcgsc.ca	37	7	48314558	48314558	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA13	NM_152701	exon17	c.C5295A	p.I1765I	.	.	113	5	78	0	.	521
ABCA5	23461	bcgsc.ca	37	17	67247972	67247972	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA5	NM_018672	exon34	c.G4451T	p.R1484L	.	.	62	4	68	0	.	93
ABCA6	23460	bcgsc.ca	37	17	67092848	67092848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCA6	NM_080284	exon24	c.T3215C	p.I1072T	.	.	173	6	96	0	.	159
ABCC3	8714	bcgsc.ca	37	17	48753396	48753396	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABCC3	NM_003786	exon22	c.A3012G	p.R1004R	.	.	83	6	58	0	.	93
ABHD1	84696	bcgsc.ca	37	2	27353583	27353583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ABHD1	NM_032604	exon9	c.C1189T	p.L397F	.	.	61	4	47	0	.	90
ACADL	33	bcgsc.ca	37	2	211070517	211070517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ACADL	NM_001608	exon6	c.T607C	p.F203L	.	.	80	5	61	0	.	90
ACTN2	88	bcgsc.ca	37	1	236882212	236882212	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ACTN2	NM_001103	exon3	c.C260A	p.P87H	.	.	117	6	81	0	.	95
ADAD1	132612	bcgsc.ca	37	4	123304996	123304996	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADAD1	NM_139243	exon5	c.A404G	p.D135G	.	.	176	7	213	1	.	90
ADAM29	11086	bcgsc.ca	37	4	175898086	175898086	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADAM29	NM_001130703	exon4	c.T1410A	p.G470G	.	.	63	4	83	0	.	729
ADAM32	203102	bcgsc.ca	37	8	39009059	39009059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADAM32	NM_145004	exon6	c.A517G	p.S173G	.	.	85	5	42	0	.	227
ADAMTS14	140766	bcgsc.ca	37	10	72511895	72511895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADAMTS14	NM_139155	exon18	c.C2650A	p.H884N	.	.	81	5	84	0	.	232
ADCY9	115	ucsc.edu;bcgsc.ca	37	16	4042259	4042259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADCY9	NM_001116	exon5	c.A2095G	p.K699E	.	.	44	4	68	0	.	139
ADRBK2	157	bcgsc.ca	37	22	26081153	26081153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ADRBK2	NM_005160	exon10	c.T764A	p.V255E	.	.	164	6	168	0	.	955
AFF1	4299	bcgsc.ca	37	4	88026978	88026978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AFF1	NM_001166693	exon10	c.T1357C	p.S453P	.	.	162	6	183	0	.	289
AFF4	27125	bcgsc.ca	37	5	132223546	132223546	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AFF4	NM_014423	exon16	c.T2925C	p.D975D	.	.	178	6	110	2	.	229
AGBL4	84871	bcgsc.ca	37	1	49052741	49052741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AGBL4	NM_032785	exon11	c.A1202G	p.E401G	.	.	60	4	48	0	.	137
AGRN	375790	ucsc.edu;bcgsc.ca	37	1	979269	979269	+	Missense_Mutation	SNP	G	G	T	rs140789461	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AGRN	NM_198576	exon10	c.G1865T	p.R622L	.	.	43	4	59	0	G|1.000;A|0.000	136
AHNAK	79026	bcgsc.ca	37	11	62290856	62290856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AHNAK	NM_001620	exon5	c.T11033C	p.L3678P	.	.	131	7	87	0	.	109
AHNAK	79026	bcgsc.ca	37	11	62294723	62294723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AHNAK	NM_001620	exon5	c.C7166A	p.P2389Q	.	.	80	6	57	0	.	109
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62293785	62293785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	AHNAK,NS,carcinoma,+2	AHNAK	NM_001620	exon5	c.A8104G	p.I2702V	.	.	212	11	189	0	.	109
AKAP13	11214	bcgsc.ca	37	15	86125203	86125203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AKAP13	NM_007200	exon7	c.A3904G	p.T1302A	.	.	83	5	59	0	.	258
AKT2	208	ucsc.edu;bcgsc.ca	37	19	40741863	40741863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AKT2	NM_001626	exon11	c.C1109A	p.P370Q	.	.	43	5	40	0	.	978
ALAS2	212	bcgsc.ca	37	X	55047636	55047636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ALAS2	NM_000032	exon5	c.C487A	p.R163S	.	.	124	5	131	0	.	131
ALDH1A1	216	bcgsc.ca	37	9	75567875	75567875	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ALDH1A1	NM_000689	exon1	c.C42A	p.T14T	.	.	102	5	77	0	.	230
ALDH3A2	224	ucsc.edu	37	17	19554905	19554905	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ALDH3A2	NM_001031806	exon2	c.G199T	p.E67X	.	.	37	4	54	0	.	228
ALG11	440138	bcgsc.ca	37	13	52593222	52593222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ALG11	NM_001004127	exon2	c.A218G	p.N73S	.	.	136	5	106	0	.	46
ANKH	56172	bcgsc.ca	37	5	14713064	14713064	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKH	NM_054027	exon11	c.G1284A	p.L428L	.	.	35	4	49	0	.	91
ANKIB1	54467	bcgsc.ca	37	7	91980269	91980269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKIB1	NM_019004	exon8	c.T1091C	p.L364S	.	.	83	4	50	0	.	432
ANKRD13C	81573	bcgsc.ca	37	1	70771973	70771973	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKRD13C	NM_030816	exon6	c.T710C	p.V237A	.	.	193	7	201	0	.	90
ANKRD35	148741	bcgsc.ca	37	1	145561728	145561728	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKRD35	NM_144698	exon10	c.A1416G	p.G472G	.	.	49	4	40	0	.	95
ANKS1B	56899	bcgsc.ca	37	12	99129389	99129389	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_152788	exon26	c.C3696A	p.T1232T	.	.	80	4	50	0	.	.
ANKS4B	257629	ucsc.edu;bcgsc.ca	37	16	21261131	21261131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANKS4B	NM_145865	exon2	c.T244C	p.S82P	.	.	35	4	65	0	.	92
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101381373	101381373	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANO4	NM_178826	exon7	c.T554A	p.L185Q	.	.	39	17	47	0	.	96
ANXA4	307	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70015202	70015202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ANXA4	NM_001153	exon3	c.C26T	p.T9I	.	.	47	6	29	0	.	90
AP1B1	162	ucsc.edu;bcgsc.ca	37	22	29730278	29730278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AP1B1	NM_001127	exon17	c.T2285C	p.F762S	.	.	27	4	45	0	.	92
AP1M2	10053	ucsc.edu	37	19	10685653	10685653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AP1M2	NM_005498	exon10	c.A1100G	p.K367R	.	.	19	4	22	0	.	92
APAF1	317	ucsc.edu;bcgsc.ca	37	12	99061422	99061422	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APAF1	NM_181868	exon10	c.G1494T	p.K498N	.	.	44	4	41	0	.	229
APLP1	333	bcgsc.ca	37	19	36365412	36365412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APLP1	NM_005166	exon9	c.C1063A	p.Q355K	.	.	50	4	48	0	.	92
APOB	338	broad.mit.edu;bcgsc.ca	37	2	21230939	21230939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	APOB	NM_000384	exon26	c.C8801A	p.P2934H	.	.	203	9	158	1	.	175
AQP8	343	bcgsc.ca	37	16	25238517	25238517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AQP8	NM_001169	exon5	c.T731C	p.L244P	.	.	45	4	93	0	.	155
AQPEP	0	broad.mit.edu	37	5	115329444	115329444	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_173800	exon6	c.G1267T	p.G423X	.	.	296	10	178	1	.	.
ARFGEF2	10564	bcgsc.ca	37	20	47607702	47607702	+	Silent	SNP	C	C	A	rs41296217	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARFGEF2	NM_006420	exon21	c.C2940A	p.T980T	.	.	113	6	107	0	C|1.000;T|0.000	358
ARG1	383	bcgsc.ca	37	6	131900296	131900296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARG1	NM_001244438	exon3	c.C200A	p.P67H	.	.	98	5	83	0	.	91
ARG1	383	ucsc.edu;bcgsc.ca	37	6	131902378	131902378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARG1	NM_001244438	exon4	c.T349C	p.S117P	.	.	36	4	37	0	.	91
ARHGAP32	9743	ucsc.edu;bcgsc.ca	37	11	129034323	129034323	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGAP32	NM_001142685	exon3	c.117-1G>T	.	.	.	44	4	28	0	.	231
ARHGAP35	2909	bcgsc.ca	37	19	47422419	47422419	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_004491	exon1	c.G487T	p.G163C	.	.	67	5	61	0	.	.
ARHGAP40	343578	bcgsc.ca	37	20	37267895	37267895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGAP40	NM_001164431	exon9	c.A1142G	p.D381G	.	.	143	8	126	1	.	68
ARHGEF12	23365	bcgsc.ca	37	11	120280137	120280137	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGEF12	NM_015313	exon4	c.G177T	p.E59D	.	.	158	6	104	0	.	661
ARHGEF40	55701	ucsc.edu;bcgsc.ca	37	14	21550156	21550156	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARHGEF40	NM_018071	exon14	c.C3129T	p.T1043T	.	.	42	4	32	0	.	228
ARID2	196528	bcgsc.ca	37	12	46211481	46211481	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARID2	NM_152641	exon5	c.C447T	p.S149S	.	.	122	5	100	0	.	100
ARID2	196528	broad.mit.edu	37	12	46233125	46233125	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARID2	NM_152641	exon11	c.T1344C	p.C448C	.	.	73	4	54	0	.	100
ARMC4	55130	bcgsc.ca	37	10	28273186	28273186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARMC4	NM_018076	exon5	c.G609T	p.K203N	.	.	135	5	64	0	.	96
ARMC9	80210	bcgsc.ca	37	2	232209720	232209720	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARMC9	NM_025139	exon21	c.G1912T	p.G638W	.	.	91	5	79	0	.	91
ARMCX5	64860	bcgsc.ca	37	X	101857896	101857896	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARMCX5	NM_022838	exon3	c.A827G	p.Q276R	.	.	56	5	64	0	.	131
ARNT2	9915	bcgsc.ca	37	15	80855442	80855442	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARNT2	NM_014862	exon12	c.A1178G	p.K393R	.	.	87	5	58	0	.	175
ARNTL2	56938	bcgsc.ca	37	12	27554189	27554189	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARNTL2	NM_001248005	exon9	c.1050-1G>T	.	.	.	60	4	41	0	.	92
ARPP21	10777	bcgsc.ca	37	3	35785401	35785401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ARPP21	NM_001267619	exon17	c.C1979A	p.P660Q	.	.	145	9	134	0	.	93
ASB5	140458	bcgsc.ca	37	4	177142411	177142411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ASB5	NM_080874	exon5	c.T565C	p.S189P	.	.	176	6	214	1	.	228
ASIC1	41	bcgsc.ca	37	12	50452863	50452863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_020039	exon2	c.A314G	p.K105R	.	.	57	4	81	0	.	.
ASTE1	28990	bcgsc.ca	37	3	130743222	130743222	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ASTE1	NM_014065	exon3	c.T929C	p.F310S	.	.	90	4	78	0	.	90
ASXL1	171023	broad.mit.edu;bcgsc.ca	37	20	31022742	31022752	+	Frame_Shift_Del	DEL	CTAGGAGATGC	CTAGGAGATGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	CTAGGAGATGC	CTAGGAGATGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ASXL1	NM_015338	exon12	c.2227_2237del	p.743_746del	.	.	84	7	76	0	.	2057
ATAD5	79915	bcgsc.ca	37	17	29195353	29195353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATAD5	NM_024857	exon12	c.G3236T	p.W1079L	.	.	147	7	97	0	.	93
ATG2A	23130	ucsc.edu	37	11	64662468	64662468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATG2A	NM_015104	exon41	c.C5794T	p.R1932C	.	.	49	4	54	0	.	69
ATG7	10533	bcgsc.ca	37	3	11374489	11374489	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATG7	NM_001136031	exon9	c.C811A	p.R271S	.	.	54	4	38	0	.	90
ATG7	10533	bcgsc.ca	37	3	11399921	11399921	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATG7	NM_001136031	exon13	c.T1314A	p.P438P	.	.	58	4	51	0	.	90
ATP13A2	23400	bcgsc.ca	37	1	17313762	17313762	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP13A2	NM_022089	exon26	c.C2862A	p.I954I	.	.	63	4	81	0	.	93
ATP13A3	79572	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194168612	194168612	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP13A3	NM_024524	exon12	c.T1277G	p.I426S	.	.	194	12	142	0	.	69
ATP5A1	498	bcgsc.ca	37	18	43669850	43669850	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP5A1	NM_004046	exon4	c.C422A	p.P141Q	.	.	198	6	140	0	.	90
ATP6V1H	51606	bcgsc.ca	37	8	54742022	54742022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP6V1H	NM_015941	exon4	c.G288T	p.M96I	.	.	70	4	38	0	.	90
ATP8A1	10396	bcgsc.ca	37	4	42553247	42553247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP8A1	NM_006095	exon18	c.G1570A	p.G524R	.	.	236	7	163	1	.	92
ATP8B1	5205	ucsc.edu;bcgsc.ca	37	18	55329818	55329818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATP8B1	NM_005603	exon21	c.A2315G	p.Q772R	.	.	41	4	28	0	.	587
ATP8B3	148229	bcgsc.ca	37	19	1783258	1783258	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_138813	exon29	c.G3672A	p.V1224V	.	.	48	4	52	0	.	.
ATR	545	bcgsc.ca	37	3	142226794	142226794	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATR	NM_001184	exon28	c.G5010A	p.Q1670Q	.	.	70	5	46	0	.	1139
ATRIP	84126	bcgsc.ca	37	3	48501577	48501577	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATRIP	NM_130384	exon8	c.T1124C	p.L375P	.	.	90	5	95	0	.	23
ATRNL1	26033	bcgsc.ca	37	10	117093900	117093900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATRNL1	NM_207303	exon19	c.G3146T	p.G1049V	.	.	53	4	67	0	.	96
ATRNL1	26033	bcgsc.ca	37	10	117221491	117221491	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ATRNL1	NM_207303	exon22	c.A3363T	p.L1121F	.	.	93	4	68	0	.	96
AVL9	23080	bcgsc.ca	37	7	32598691	32598691	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AVL9	NM_015060	exon10	c.T830C	p.I277T	.	.	65	4	60	0	.	90
AVPR1B	553	bcgsc.ca	37	1	206224880	206224880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AVPR1B	NM_000707	exon1	c.G440T	p.G147V	.	.	64	7	49	0	.	569
AXIN2	8313	broad.mit.edu;bcgsc.ca	37	17	63526129	63526129	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXIN2	NM_004655	exon11	c.G2497T	p.G833C	.	.	57	5	62	0	.	658
AXL	558	ucsc.edu;bcgsc.ca	37	19	41726725	41726725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	AXL	NM_021913	exon2	c.G270T	p.E90D	.	.	44	4	32	0	.	1403
B4GALNT3	283358	ucsc.edu;bcgsc.ca	37	12	645454	645454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	B4GALNT3	NM_173593	exon3	c.T344C	p.L115P	.	.	56	5	44	0	.	92
BACH1	571	broad.mit.edu;bcgsc.ca	37	21	30698445	30698445	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BACH1	NM_206866	exon3	c.A300G	p.K100K	.	.	191	7	121	0	.	92
BAG2	9532	bcgsc.ca	37	6	57048792	57048792	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAG2	NM_004282	exon3	c.C440T	p.P147L	.	.	90	6	61	0	.	227
BAZ1A	11177	bcgsc.ca	37	14	35331476	35331476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ1A	NM_182648	exon3	c.G166A	p.V56M	.	.	50	4	58	0	.	291
BAZ1A	11177	ucsc.edu;bcgsc.ca	37	14	35227971	35227971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ1A	NM_013448	exon25	c.T4325C	p.V1442A	.	.	50	4	34	0	.	291
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56993854	56993854	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BAZ2A	NM_013449	exon25	c.G4925T	p.R1642L	.	.	73	29	90	0	.	22
BBS10	79738	bcgsc.ca	37	12	76740738	76740738	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BBS10	NM_024685	exon2	c.C1027A	p.R343R	.	.	38	4	41	0	.	92
BCAT1	586	bcgsc.ca	37	12	25002832	25002832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BCAT1	NM_001178093	exon6	c.A598G	p.S200G	.	.	60	4	49	0	.	522
BCCIP	56647	bcgsc.ca	37	10	127516170	127516170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BCCIP	NM_078469	exon3	c.T284C	p.L95P	.	.	101	4	102	0	.	154
BCKDK	10295	bcgsc.ca	37	16	31122698	31122698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BCKDK	NM_005881	exon10	c.A923G	p.D308G	.	.	87	5	109	0	.	765
BCL7B	9275	bcgsc.ca	37	7	72954322	72954322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BCL7B	NM_001707	exon4	c.C326T	p.T109I	.	.	10	3	20	0	.	228
BCLAF1	9774	bcgsc.ca	37	6	136597033	136597033	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BCLAF1	NM_014739	exon5	c.C1630A	p.R544S	.	.	123	6	170	0	.	228
BIRC3	330	bcgsc.ca	37	11	102206926	102206926	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BIRC3	NM_001165	exon7	c.A1554G	p.E518E	.	.	76	4	66	0	.	662
BIRC6	57448	bcgsc.ca	37	2	32668600	32668600	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BIRC6	NM_016252	exon20	c.T4280C	p.V1427A	.	.	97	5	56	0	.	233
BMS1	9790	ucsc.edu;bcgsc.ca	37	10	43279928	43279928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BMS1	NM_014753	exon2	c.T86C	p.L29P	.	.	60	5	54	0	.	93
BOC	91653	ucsc.edu;bcgsc.ca	37	3	112998756	112998756	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BOC	NM_033254	exon13	c.G2106T	p.S702S	.	.	38	4	38	0	.	157
BOD1L1	259282	bcgsc.ca	37	4	13584358	13584358	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_148894	exon18	c.A8436G	p.E2812E	.	.	124	5	86	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BPNT1	.	.	.	.	.	.	200	1	137	0	.	91
BPNT1	10380	ucsc.edu	37	1	220231276	220231276	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BPNT1	.	.	.	.	.	.	166	1	116	0	.	91
BPNT1	10380	ucsc.edu	37	1	220231298	220231298	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BPNT1	.	.	.	.	.	.	106	1	73	0	.	91
BRCC3	79184	bcgsc.ca	37	X	154344430	154344430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRCC3	NM_024332	exon9	c.A722G	p.Q241R	.	.	207	8	133	0	.	706
BRD7	29117	bcgsc.ca	37	16	50373960	50373960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRD7	NM_013263	exon6	c.A629T	p.Y210F	.	.	138	6	126	0	.	90
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92433718	92433718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRDT	NM_001242806	exon4	c.G346T	p.V116F	.	.	50	16	58	0	.	374
BRMS1	25855	bcgsc.ca	37	11	66105723	66105723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRMS1	NM_015399	exon9	c.A724G	p.K242E	.	.	54	4	48	0	.	90
BRSK2	9024	bcgsc.ca	37	11	1475738	1475738	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRSK2	NM_001256630	exon16	c.G1706T	p.G569V	.	.	55	4	52	0	.	333
BRWD1	54014	bcgsc.ca	37	21	40559028	40559028	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	BRWD1	NM_018963	exon42	c.A6887G	p.E2296G	.	.	219	6	143	1	.	94
BTNL3	10917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180432823	180432823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_197975	exon8	c.A1352C	p.D451A	.	.	126	30	97	0	.	.
C10orf76	79591	ucsc.edu;bcgsc.ca	37	10	103789456	103789456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C10orf76	NM_024541	exon5	c.C353T	p.T118I	.	.	32	4	37	0	.	90
C11orf30	56946	bcgsc.ca	37	11	76227206	76227206	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C11orf30	NM_020193	exon11	c.C1534A	p.R512R	.	.	125	5	102	1	.	232
C11orf57	55216	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	111953659	111953659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C11orf57	NM_001082969	exon6	c.C845T	p.T282I	.	.	49	14	41	0	.	155
C12orf56	115749	bcgsc.ca	37	12	64668687	64668687	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C12orf56	NM_001170633	exon11	c.T1578C	p.P526P	.	.	165	5	116	0	.	68
C15orf54	400360	bcgsc.ca	37	15	39544725	39544725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C15orf54	NM_207445	exon2	c.A389G	p.K130R	.	.	93	5	99	0	.	492
C16orf58	64755	ucsc.edu	37	16	31505006	31505006	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C16orf58	NM_022744	exon8	c.G876A	p.E292E	.	.	42	4	49	0	.	154
C16orf62	57020	bcgsc.ca	37	16	19603177	19603177	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C16orf62	NM_020314	exon8	c.C972A	p.T324T	.	.	92	4	91	0	.	69
C19orf70	125988	bcgsc.ca	37	19	5678617	5678617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C19orf70	NM_205767	exon4	c.A302G	p.K101R	.	.	43	4	44	0	.	68
C1orf141	400757	bcgsc.ca	37	1	67591448	67591448	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C1orf141	NM_001276352	exon4	c.A220G	p.T74A	.	.	95	4	106	1	.	91
C1orf213	148898	ucsc.edu	37	1	23698221	23698221	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C1orf213	.	.	.	.	.	.	19	4	20	0	.	68
C1S	716	bcgsc.ca	37	12	7174352	7174352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C1S	NM_201442	exon9	c.G997T	p.G333C	.	.	139	9	115	0	.	91
C21orf128	150147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43523889	43523889	+	RNA	SNP	C	C	T	rs138845188	by1000genomes	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	105	10	91	0	C|0.999;T|0.000	.
C2CD3	26005	bcgsc.ca	37	11	73759355	73759355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C2CD3	NM_015531	exon28	c.C5390A	p.P1797H	.	.	112	5	82	0	.	75
C2CD5	9847	bcgsc.ca	37	12	22610081	22610081	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_014802	exon23	c.A2548G	p.K850E	.	.	205	6	159	0	.	.
C4orf40	401137	bcgsc.ca	37	4	71024177	71024177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C4orf40	NM_214711	exon3	c.A208G	p.T70A	.	.	68	4	104	0	.	68
C5	727	bcgsc.ca	37	9	123777477	123777477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C5	NM_001735	exon16	c.G2059T	p.A687S	.	.	224	7	120	0	.	92
C6orf211	79624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151790078	151790078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C6orf211	NM_024573	exon5	c.C1159G	p.Q387E	.	.	70	7	83	0	.	90
C6orf58	352999	bcgsc.ca	37	6	127911388	127911388	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	C6orf58	NM_001010905	exon5	c.C831A	p.A277A	.	.	55	4	40	0	.	90
CACNA2D1	781	bcgsc.ca	37	7	81593602	81593602	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CACNA2D1	NM_000722	exon33	c.A2648T	p.N883I	.	.	67	4	51	0	.	96
CAMSAP2	23271	broad.mit.edu	37	1	200824009	200824009	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_203459	exon14	c.G3888C	p.R1296S	.	.	134	5	75	0	.	.
CAPN5	726	ucsc.edu	37	11	76831783	76831783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CAPN5	NM_004055	exon10	c.A1315G	p.M439V	.	.	47	4	43	0	.	90
CASC1	55259	bcgsc.ca	37	12	25302565	25302565	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CASC1	NM_001082972	exon7	c.C756A	p.L252L	.	.	114	5	88	0	.	92
CATSPERG	57828	bcgsc.ca	37	19	38848929	38848929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CATSPERG	NM_021185	exon12	c.C1327A	p.L443M	.	.	82	6	68	0	.	92
CCDC13	152206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42754745	42754745	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC13	NM_144719	exon14	c.C1782T	p.R594R	.	.	38	8	44	0	.	91
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449544	128449544	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC136	NM_022742	exon11	c.A1646T	p.K549M	.	.	221	61	248	0	.	24
CCDC141	285025	bcgsc.ca	37	2	179749702	179749702	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC141	NM_173648	exon11	c.C1645A	p.L549I	.	.	197	6	179	0	.	78
CCDC150	284992	bcgsc.ca	37	2	197541395	197541395	+	Missense_Mutation	SNP	G	G	T	rs200402640	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001080539	exon12	c.G1380T	p.L460F	.	.	304	8	211	0	G|0.998;A|0.002	.
CCDC158	339965	bcgsc.ca	37	4	77317522	77317522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC158	NM_001042784	exon3	c.C188A	p.S63Y	.	.	127	6	194	0	.	96
CCDC158	339965	bcgsc.ca	37	4	77324358	77324358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC158	NM_001042784	exon2	c.G3A	p.M1I	.	.	71	4	55	0	.	96
CCDC160	347475	bcgsc.ca	37	X	133378875	133378875	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC160	NM_001101357	exon2	c.T45C	p.P15P	.	.	176	7	128	1	.	40
CCDC171	203238	bcgsc.ca	37	9	15666284	15666284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_173550	exon9	c.A1039G	p.K347E	.	.	75	5	43	0	.	.
CCDC171	203238	bcgsc.ca	37	9	15721850	15721850	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_173550	exon12	c.A1402G	p.K468E	.	.	46	4	48	0	.	.
CCDC39	339829	bcgsc.ca	37	3	180334135	180334135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC39	NM_181426	exon19	c.C2603A	p.P868H	.	.	154	6	114	0	.	72
CCDC51	79714	bcgsc.ca	37	3	48474499	48474499	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC51	NM_024661	exon4	c.T555C	p.A185A	.	.	64	4	56	0	.	90
CCDC66	285331	bcgsc.ca	37	3	56651569	56651569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCDC66	NM_001141947	exon14	c.C2273A	p.P758Q	.	.	201	6	156	0	.	135
CCDC79	283847	bcgsc.ca	37	16	66803900	66803900	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001136505	exon14	c.A1585G	p.T529A	.	.	105	5	119	0	.	.
CCNL2	81669	bcgsc.ca	37	1	1330822	1330822	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCNL2	NM_030937	exon4	c.A546T	p.R182R	.	.	54	4	65	0	.	70
CCP110	9738	ucsc.edu;bcgsc.ca	37	16	19547850	19547850	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCP110	NM_001199022	exon4	c.T859C	p.S287P	.	.	41	5	61	0	.	90
CCR1	1230	ucsc.edu	37	3	46245733	46245733	+	Nonsense_Mutation	SNP	G	G	T	rs143414660	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCR1	NM_001295	exon2	c.C72A	p.C24X	.	.	45	4	55	0	G|0.999;A|0.001	660
CCT7	10574	bcgsc.ca	37	2	73477458	73477458	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CCT7	NM_006429	exon10	c.C1095A	p.P365P	.	.	175	8	152	0	.	90
CD160	11126	ucsc.edu	37	1	145704288	145704288	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD160	NM_007053	exon4	c.C129A	p.I43I	.	.	29	4	18	0	.	90
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7522105	7522105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD163L1	NM_174941	exon15	c.T3887C	p.L1296P	.	.	27	7	35	0	.	100
CD226	10666	bcgsc.ca	37	18	67531635	67531635	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD226	NM_006566	exon7	c.C926A	p.P309H	.	.	135	6	96	0	.	90
CD248	57124	ucsc.edu	37	11	66083385	66083385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD248	NM_020404	exon1	c.G1114T	p.G372W	.	.	27	4	36	0	.	154
CD59	966	ucsc.edu	37	11	33738932	33738932	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CD59	NM_203331	exon4	c.T153C	p.C51C	.	.	37	4	37	0	.	90
CDC16	8881	bcgsc.ca	37	13	115037837	115037837	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDC16	NM_003903	exon18	c.T1782C	p.P594P	.	.	126	5	105	0	.	226
CDC23	8697	bcgsc.ca	37	5	137528207	137528207	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDC23	NM_004661	exon10	c.T1152C	p.A384A	.	.	93	4	85	0	.	226
CDK14	5218	ucsc.edu;bcgsc.ca	37	7	90741982	90741982	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK14	NM_012395	exon12	c.G1226T	p.W409L	.	.	42	4	32	0	.	970
CDK5RAP2	55755	ucsc.edu;bcgsc.ca	37	9	123308036	123308036	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK5RAP2	NM_018249	exon5	c.G339T	p.L113L	.	.	45	5	33	0	.	229
CDK5RAP3	80279	bcgsc.ca	37	17	46058068	46058068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK5RAP3	NM_176096	exon12	c.A1187G	p.E396G	.	.	126	5	91	0	.	226
CDK8	1024	bcgsc.ca	37	13	26970491	26970491	+	Missense_Mutation	SNP	C	C	A	rs201577656	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDK8	NM_001260	exon8	c.C860A	p.T287K	.	.	293	7	175	0	C|1.000;T|0.000	1023
CDSN	1041	ucsc.edu	37	6	31084328	31084328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDSN	NM_001264	exon2	c.C1064A	p.P355H	.	.	44	5	28	0	.	92
CDSN	1041	ucsc.edu;bcgsc.ca	37	6	31084904	31084904	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CDSN	NM_001264	exon2	c.T488C	p.F163S	.	.	34	6	20	0	.	92
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37455644	37455644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEBPZ	NM_005760	exon2	c.C692G	p.S231C	.	.	122	30	82	0	.	91
CELF5	60680	bcgsc.ca	37	19	3250991	3250991	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CELF5	NM_021938	exon2	c.T268C	p.F90L	.	.	69	4	73	0	.	92
CENPE	1062	bcgsc.ca	37	4	104062058	104062058	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CENPE	NM_001813	exon36	c.A5667G	p.K1889K	.	.	125	5	141	0	.	277
CENPJ	55835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	25466801	25466801	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CENPJ	NM_018451	exon10	c.G3196T	p.E1066X	.	.	176	45	117	0	.	92
CEP112	201134	bcgsc.ca	37	17	64092732	64092732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP112	NM_001199165	exon7	c.C661A	p.L221M	.	.	137	5	91	0	.	90
CEP120	153241	bcgsc.ca	37	5	122724284	122724284	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP120	NM_153223	exon10	c.T1272C	p.P424P	.	.	54	4	36	0	.	91
CEP152	22995	bcgsc.ca	37	15	49059268	49059268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP152	NM_014985	exon17	c.A2269G	p.T757A	.	.	65	5	57	0	.	70
CEP350	9857	bcgsc.ca	37	1	179965952	179965952	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP350	NM_014810	exon6	c.A660G	p.R220R	.	.	187	6	82	0	.	26
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	179989459	179989459	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CEP350	NM_014810	exon12	c.C2550T	p.S850S	.	.	81	19	49	0	.	26
CES3	23491	ucsc.edu;bcgsc.ca	37	16	66998383	66998383	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CES3	NM_024922	exon5	c.A684G	p.G228G	.	.	38	4	64	0	.	517
CHAC2	494143	broad.mit.edu;bcgsc.ca	37	2	53999079	53999079	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHAC2	NM_001008708	exon2	c.G171T	p.A57A	.	.	634	15	408	0	.	90
CHAT	1103	bcgsc.ca	37	10	50833657	50833657	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHAT	NM_020549	exon6	c.C891A	p.I297I	.	.	34	4	46	0	.	514
CHCHD4	131474	bcgsc.ca	37	3	14163428	14163428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHCHD4	NM_144636	exon2	c.G50T	p.G17V	.	.	79	5	68	0	.	90
CHD6	84181	bcgsc.ca	37	20	40050300	40050300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHD6	NM_032221	exon31	c.C4975T	p.P1659S	.	.	56	4	38	0	.	238
CHD6	84181	bcgsc.ca	37	20	40084515	40084515	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHD6	NM_032221	exon19	c.C2934T	p.D978D	.	.	90	5	82	0	.	238
CHRD	8646	ucsc.edu;bcgsc.ca	37	3	184101103	184101103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHRD	NM_003741	exon11	c.T1217C	p.L406P	.	.	38	4	31	0	.	93
CHRNA6	8973	bcgsc.ca	37	8	42611601	42611601	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHRNA6	NM_004198	exon5	c.G741T	p.L247L	.	.	76	5	63	1	.	90
CHST15	51363	bcgsc.ca	37	10	125805418	125805418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHST15	NM_001270764	exon2	c.A311G	p.E104G	.	.	115	8	143	0	.	91
CHUK	1147	ucsc.edu;bcgsc.ca	37	10	101982676	101982676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CHUK	NM_001278	exon3	c.C262A	p.H88N	.	.	31	4	45	0	.	961
CLASP1	23332	bcgsc.ca	37	2	122168500	122168500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLASP1	NM_015282	exon24	c.A2366G	p.N789S	.	.	53	4	33	0	.	91
CLCA1	1179	bcgsc.ca	37	1	86952317	86952317	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLCA1	NM_001285	exon7	c.G1063A	p.V355I	.	.	55	4	93	0	.	91
CLDND1	56650	bcgsc.ca	37	3	98240219	98240219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLDND1	NM_001040182	exon3	c.T119C	p.L40P	.	.	132	5	104	0	.	91
CLEC1A	51267	bcgsc.ca	37	12	10225892	10225892	+	Missense_Mutation	SNP	A	A	G	rs201411287		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLEC1A	NM_016511	exon5	c.T662C	p.L221P	.	.	92	6	48	0	A|0.999;G|0.000	91
CLECL1	160365	bcgsc.ca	37	12	9885614	9885614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLECL1	NM_001267701	exon1	c.G247A	p.V83I	.	.	94	5	57	0	.	90
CLNS1A	1207	bcgsc.ca	37	11	77348674	77348674	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLNS1A	NM_001293	exon1	c.G86T	p.G29V	.	.	88	5	88	1	.	91
CLTC	1213	bcgsc.ca	37	17	57742242	57742242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CLTC	NM_004859	exon10	c.A1616G	p.D539G	.	.	70	4	44	0	.	835
CMAS	55907	bcgsc.ca	37	12	22213817	22213817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CMAS	NM_018686	exon5	c.G745T	p.D249Y	.	.	58	4	57	0	.	93
CMYA5	202333	bcgsc.ca	37	5	79027375	79027375	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CMYA5	NM_153610	exon2	c.C2787A	p.S929S	.	.	55	4	40	0	.	77
CNTNAP1	8506	bcgsc.ca	37	17	40840608	40840608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CNTNAP1	NM_003632	exon9	c.G1435C	p.G479R	.	.	51	4	36	0	.	525
CNTNAP4	85445	bcgsc.ca	37	16	76481919	76481919	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CNTNAP4	NM_138994	exon5	c.G474A	p.V158V	.	.	79	4	109	0	.	70
CNTNAP4	85445	bcgsc.ca	37	16	76482060	76482060	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CNTNAP4	NM_138994	exon5	c.T615C	p.D205D	.	.	67	4	105	0	.	70
CNTRL	11064	bcgsc.ca	37	9	123924166	123924166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CNTRL	NM_007018	exon31	c.G5122A	p.E1708K	.	.	164	5	111	1	.	661
COBLL1	22837	bcgsc.ca	37	2	165551664	165551664	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COBLL1	NM_014900	exon12	c.A2352G	p.K784K	.	.	188	6	124	1	.	93
COL11A1	1301	bcgsc.ca	37	1	103471840	103471840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COL11A1	NM_080629	exon16	c.C1751A	p.P584Q	.	.	77	4	71	0	.	586
COL24A1	255631	bcgsc.ca	37	1	86200533	86200533	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COL24A1	NM_152890	exon59	c.A4897G	p.T1633A	.	.	132	5	174	0	.	94
COL24A1	255631	bcgsc.ca	37	1	86523655	86523655	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COL24A1	NM_152890	exon10	c.T1810C	p.L604L	.	.	68	4	58	0	.	94
COL2A1	1280	bcgsc.ca	37	12	48389670	48389670	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COL2A1	NM_001844	exon9	c.T642C	p.P214P	.	.	108	6	90	0	.	92
COL4A2	1284	bcgsc.ca	37	13	111137331	111137331	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COL4A2	NM_001846	exon33	c.A2982G	p.G994G	.	.	78	4	81	0	.	95
COQ9	57017	bcgsc.ca	37	16	57494525	57494525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	COQ9	NM_020312	exon9	c.C946A	p.Q316K	.	.	67	4	110	1	.	135
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9462	9462	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	ENST00000362079	exon1	c.T256C	p.F86L	.	.	175	6	129	0	.	.
CPA3	1359	bcgsc.ca	37	3	148596537	148596537	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CPA3	NM_001870	exon5	c.474+2T>A	.	.	.	68	4	46	0	.	154
CRB1	23418	bcgsc.ca	37	1	197316504	197316504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CRB1	NM_001257966	exon4	c.G883T	p.G295W	.	.	66	6	54	0	.	161
CRB1	23418	bcgsc.ca	37	1	197447000	197447000	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CRB1	NM_201253	exon12	c.A4212G	p.R1404R	.	.	55	4	56	0	.	161
CRB2	286204	bcgsc.ca	37	9	126133780	126133780	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CRB2	NM_173689	exon8	c.T2359C	p.S787P	.	.	60	5	53	0	.	91
CRELD1	78987	bcgsc.ca	37	3	9976551	9976551	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CRELD1	NM_001077415	exon3	c.A207G	p.G69G	.	.	118	6	102	0	.	91
CRHBP	1393	bcgsc.ca	37	5	76251628	76251628	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CRHBP	NM_001882	exon4	c.C484A	p.R162R	.	.	94	4	76	0	.	90
CROCC	9696	bcgsc.ca	37	1	17249181	17249181	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CROCC	NM_014675	exon2	c.C84T	p.C28C	.	.	39	4	42	0	.	137
CSDE1	7812	bcgsc.ca	37	1	115284203	115284203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSDE1	NM_001130523	exon3	c.C83T	p.S28F	.	.	72	4	73	0	.	227
CSK	1445	bcgsc.ca	37	15	75094849	75094849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSK	NM_001127190	exon14	c.C1348A	p.L450M	.	.	55	4	31	0	.	510
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37678951	37678951	+	Missense_Mutation	SNP	C	C	T	rs201851808		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSNK1A1L	NM_145203	exon1	c.G443A	p.R148H	.	.	260	88	208	0	C|0.999;T|0.000	396
CSPG4	1464	bcgsc.ca	37	15	75968781	75968781	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSPG4	NM_001897	exon10	c.C6079A	p.L2027M	.	.	98	4	96	0	.	229
CSRNP3	80034	bcgsc.ca	37	2	166532896	166532896	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CSRNP3	NM_001172173	exon6	c.T483C	p.I161I	.	.	87	4	52	0	.	157
CUX1	1523	ucsc.edu	37	7	101844681	101844681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CUX1	NM_001202543	exon18	c.T2137C	p.S713P	.	.	49	4	72	0	.	160
CUZD1	50624	bcgsc.ca	37	10	124594574	124594574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CUZD1	NM_022034	exon7	c.T1030C	p.F344L	.	.	56	4	57	0	.	92
CWC22	57703	bcgsc.ca	37	2	180846719	180846719	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CWC22	NM_020943	exon5	c.G212T	p.R71M	.	.	59	4	41	0	.	90
CXorf23	256643	bcgsc.ca	37	X	19954002	19954002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CXorf23	NM_198279	exon9	c.G1788T	p.Q596H	.	.	216	7	157	0	.	130
CXorf30	645090	bcgsc.ca	37	X	36371737	36371737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CXorf30	NM_001098843	exon15	c.T1130C	p.L377P	.	.	153	6	114	0	.	62
CXorf57	55086	bcgsc.ca	37	X	105855697	105855697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CXorf57	NM_018015	exon1	c.G387T	p.M129I	.	.	52	4	37	0	.	131
CYP2B6	1555	bcgsc.ca	37	19	41512866	41512866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CYP2B6	NM_000767	exon4	c.T541C	p.S181P	.	.	165	7	124	0	.	92
CYP3A7	1551	bcgsc.ca	37	7	99311160	99311160	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CYP3A7	NM_000765	exon10	c.799-2A>T	.	.	.	104	5	86	0	.	91
CYTIP	9595	bcgsc.ca	37	2	158283862	158283862	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	CYTIP	NM_004288	exon7	c.546+1G>T	.	.	.	77	5	58	0	.	93
DCAF6	55827	bcgsc.ca	37	1	167962620	167962620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DCAF6	NM_001198956	exon7	c.C845A	p.P282Q	.	.	210	6	90	0	.	516
DCLK1	9201	bcgsc.ca	37	13	36428722	36428722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DCLK1	NM_004734	exon6	c.A949G	p.T317A	.	.	78	4	54	0	.	826
DCLRE1A	9937	bcgsc.ca	37	10	115601219	115601219	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DCLRE1A	NM_014881	exon7	c.C2766A	p.T922T	.	.	134	6	117	0	.	228
DCSTAMP	81501	bcgsc.ca	37	8	105361345	105361345	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001257317	exon2	c.A565G	p.S189G	.	.	21	3	28	0	.	.
DDHD2	23259	bcgsc.ca	37	8	38109807	38109807	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DDHD2	NM_015214	exon13	c.1617+2T>C	.	.	.	64	4	58	0	.	91
DDX41	51428	ucsc.edu	37	5	176940693	176940693	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DDX41	NM_016222	exon10	c.A1091T	p.Y364F	.	.	50	4	50	0	.	226
DDX60	55601	bcgsc.ca	37	4	169183934	169183934	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DDX60	NM_017631	exon23	c.A3044G	p.E1015G	.	.	184	6	147	0	.	25
DDX60	55601	bcgsc.ca	37	4	169188762	169188762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DDX60	NM_017631	exon22	c.C3010T	p.H1004Y	.	.	250	8	257	0	.	25
DENND1A	57706	bcgsc.ca	37	9	126371729	126371729	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DENND1A	NM_024820	exon11	c.T751C	p.L251L	.	.	73	4	53	0	.	92
DEPDC5	9681	bcgsc.ca	37	22	32218748	32218748	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DEPDC5	NM_001136029	exon23	c.T2076C	p.S692S	.	.	64	4	30	0	.	519
DGAT1	8694	bcgsc.ca	37	8	145542517	145542517	+	Silent	SNP	G	G	T	rs144404362	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_012079	exon4	c.C396A	p.P132P	.	.	64	4	83	0	G|1.000;A|0.000	.
DHX33	56919	bcgsc.ca	37	17	5356932	5356932	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DHX33	NM_020162	exon8	c.T1364C	p.L455P	.	.	66	5	64	0	.	228
DHX9	1660	bcgsc.ca	37	1	182850418	182850418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DHX9	NM_001357	exon23	c.A2644G	p.T882A	.	.	188	6	94	0	.	92
DIP2A	23181	ucsc.edu;bcgsc.ca	37	21	47978170	47978170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DIP2A	NM_015151	exon32	c.G3833T	p.C1278F	.	.	39	4	45	0	.	24
DLG2	1740	bcgsc.ca	37	11	83874554	83874554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DLG2	NM_001142699	exon9	c.G574A	p.V192I	.	.	84	4	45	0	.	96
DLL3	10683	bcgsc.ca	37	19	39991261	39991261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DLL3	NM_016941	exon3	c.T358C	p.F120L	.	.	119	5	110	0	.	1083
DMGDH	29958	bcgsc.ca	37	5	78350118	78350118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DMGDH	NM_013391	exon4	c.G429T	p.R143S	.	.	85	5	62	0	.	94
DMP1	1758	bcgsc.ca	37	4	88583127	88583127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DMP1	NM_004407	exon6	c.C197A	p.P66H	.	.	65	5	82	0	.	132
DMXL1	1657	bcgsc.ca	37	5	118482597	118482597	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DMXL1	NM_005509	exon16	c.C2635A	p.R879S	.	.	158	5	101	0	.	92
DMXL2	23312	bcgsc.ca	37	15	51829031	51829031	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DMXL2	NM_001174117	exon12	c.C1646T	p.A549V	.	.	63	5	41	0	.	99
DNAH10	196385	bcgsc.ca	37	12	124274642	124274642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH10	NM_207437	exon11	c.A1606G	p.M536V	.	.	59	4	85	0	.	95
DNAH1	25981	bcgsc.ca	37	3	52412751	52412751	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH1	NM_015512	exon47	c.C7332T	p.S2444S	.	.	60	4	70	0	.	67
DNAH5	1767	bcgsc.ca	37	5	13923509	13923509	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH5	NM_001369	exon4	c.A318G	p.G106G	.	.	90	4	91	0	.	182
DNAH6	1768	bcgsc.ca	37	2	84864343	84864343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH6	NM_001370	exon31	c.T4663C	p.F1555L	.	.	67	4	57	0	.	69
DNAH8	1769	bcgsc.ca	37	6	38939378	38939378	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH8	NM_001206927	exon83	c.T12462C	p.T4154T	.	.	70	4	77	0	.	615
DNAH8	1769	bcgsc.ca	37	6	38942262	38942262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAH8	NM_001206927	exon85	c.A12791G	p.K4264R	.	.	60	4	43	0	.	615
DNAJC13	23317	bcgsc.ca	37	3	132199246	132199246	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNAJC13	NM_015268	exon26	c.A2806G	p.I936V	.	.	57	4	44	0	.	272
DNMT3B	1789	bcgsc.ca	37	20	31381358	31381358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DNMT3B	NM_006892	exon10	c.G1083T	p.K361N	.	.	161	6	143	0	.	660
DOCK3	1795	bcgsc.ca	37	3	51352496	51352496	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK3	NM_004947	exon32	c.C3339A	p.I1113I	.	.	128	6	75	0	.	22
DOCK5	80005	bcgsc.ca	37	8	25199314	25199314	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK5	NM_024940	exon24	c.T2499C	p.P833P	.	.	70	4	98	0	.	71
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11339690	11339690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK6	NM_020812	exon23	c.C2740T	p.L914L	.	.	37	15	51	0	.	93
DOCK7	85440	bcgsc.ca	37	1	62941578	62941578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DOCK7	NM_001271999	exon45	c.G5728A	p.D1910N	.	.	75	4	61	0	.	92
DPF2	5977	bcgsc.ca	37	11	65111489	65111489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPF2	NM_006268	exon6	c.A586G	p.K196E	.	.	99	6	90	0	.	91
DPH5	51611	ucsc.edu;bcgsc.ca	37	1	101490900	101490900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPH5	NM_001077395	exon2	c.T100A	p.Y34N	.	.	34	4	36	0	.	90
DPPA2	151871	bcgsc.ca	37	3	109028178	109028178	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPPA2	NM_138815	exon5	c.182-1G>T	.	.	.	188	7	103	0	.	93
DPYD	1806	bcgsc.ca	37	1	97915641	97915641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DPYD	NM_000110	exon14	c.G1879A	p.E627K	.	.	74	6	97	0	.	278
DRP2	1821	bcgsc.ca	37	X	100513310	100513310	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DRP2	NM_001939	exon22	c.A2403G	p.G801G	.	.	111	7	120	0	.	132
DRP2	1821	bcgsc.ca	37	X	100515144	100515144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DRP2	NM_001939	exon23	c.A2735G	p.D912G	.	.	74	5	57	0	.	132
DSC2	1824	bcgsc.ca	37	18	28669528	28669528	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DSC2	NM_024422	exon5	c.C504A	p.T168T	.	.	141	6	71	0	.	517
DSCAM	1826	bcgsc.ca	37	21	41516604	41516604	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DSCAM	NM_001271534	exon17	c.C3073A	p.R1025R	.	.	69	4	74	0	.	101
DSG3	1830	bcgsc.ca	37	18	29046628	29046628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DSG3	NM_001944	exon11	c.T1547C	p.L516P	.	.	60	4	50	0	.	98
DSG4	147409	bcgsc.ca	37	18	28979481	28979481	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DSG4	NM_001134453	exon9	c.A1252G	p.T418A	.	.	95	4	72	0	.	177
DYDC1	143241	bcgsc.ca	37	10	82095919	82095919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYDC1	NM_001269053	exon7	c.A527G	p.D176G	.	.	56	4	33	0	.	68
DYDC1	143241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82098869	82098869	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYDC1	NM_001269053	exon5	c.A383G	p.D128G	.	.	288	28	151	0	.	68
DYDC2	84332	bcgsc.ca	37	10	82122338	82122338	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYDC2	NM_001270042	exon2	c.A181G	p.K61E	.	.	71	4	62	0	.	90
DYNC1H1	1778	bcgsc.ca	37	14	102449414	102449414	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYNC1H1	NM_001376	exon6	c.T1020C	p.P340P	.	.	92	4	86	0	.	98
DYSF	8291	ucsc.edu	37	2	71778843	71778843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	DYSF	NM_001130982	exon20	c.G1841T	p.R614L	.	.	36	4	54	0	.	158
ECH1	1891	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39322023	39322023	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ECH1	NM_001398	exon2	c.T186C	p.S62S	.	.	33	12	27	0	.	91
EFEMP2	30008	bcgsc.ca	37	11	65637616	65637616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EFEMP2	NM_016938	exon6	c.G583T	p.G195W	.	.	71	4	58	0	.	91
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38407124	38407124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EGFLAM	NM_001205301	exon8	c.G1023T	p.R341S	.	.	118	30	90	0	.	187
EGLN3	112399	bcgsc.ca	37	14	34396186	34396186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EGLN3	NM_022073	exon4	c.A668G	p.K223R	.	.	184	6	145	1	.	226
EHD4	30844	bcgsc.ca	37	15	42201988	42201988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EHD4	NM_139265	exon5	c.A998G	p.E333G	.	.	172	7	119	0	.	92
EIF2AK4	440275	bcgsc.ca	37	15	40289235	40289235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EIF2AK4	NM_001013703	exon19	c.A2837G	p.E946G	.	.	147	6	137	0	.	757
EIF2S1	1965	bcgsc.ca	37	14	67843218	67843218	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EIF2S1	NM_004094	exon4	c.A384G	p.E128E	.	.	158	5	134	0	.	91
EIF4H	7458	broad.mit.edu;bcgsc.ca	37	7	73602087	73602087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EIF4H	NM_022170	exon2	c.G206T	p.S69I	.	.	78	6	56	0	.	90
ELMO1	9844	bcgsc.ca	37	7	37311481	37311481	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ELMO1	NM_014800	exon5	c.A199G	p.N67D	.	.	125	6	86	0	.	96
ELMOD3	84173	bcgsc.ca	37	2	85595846	85595846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ELMOD3	NM_001135022	exon7	c.G237T	p.W79C	.	.	62	4	41	1	.	92
EMC1	23065	bcgsc.ca	37	1	19547271	19547271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_015047	exon21	c.A2659G	p.T887A	.	.	65	4	107	0	.	.
EML4	27436	bcgsc.ca	37	2	42522265	42522265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EML4	NM_019063	exon12	c.A1219G	p.T407A	.	.	101	5	97	0	.	3734
EP300	2033	bcgsc.ca	37	22	41573933	41573933	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EP300	NM_001429	exon31	c.T6218C	p.I2073T	.	.	66	4	46	0	.	2011
EP400	57634	bcgsc.ca	37	12	132490719	132490719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EP400	NM_015409	exon14	c.T2998C	p.F1000L	.	.	66	4	84	0	.	520
EP400	57634	bcgsc.ca	37	12	132498372	132498372	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EP400	NM_015409	exon19	c.A3837G	p.Q1279Q	.	.	57	4	57	0	.	520
EPHA7	2045	bcgsc.ca	37	6	93982127	93982127	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EPHA7	NM_004440	exon6	c.G1338T	p.V446V	.	.	92	4	88	0	.	1453
EPN1	29924	ucsc.edu	37	19	56206338	56206338	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001130071	exon10	c.T1769C	p.F590S	.	.	25	4	28	0	.	.
EPS8L2	64787	bcgsc.ca	37	11	726649	726649	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EPS8L2	NM_022772	exon20	c.G1965T	p.G655G	.	.	49	5	52	0	.	91
EREG	2069	bcgsc.ca	37	4	75248470	75248470	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EREG	NM_001432	exon4	c.T387C	p.F129F	.	.	89	5	113	0	.	586
ERLIN2	11160	bcgsc.ca	37	8	37607351	37607351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ERLIN2	NM_007175	exon8	c.C538A	p.R180S	.	.	85	6	79	0	.	90
ERP29	10961	ucsc.edu;bcgsc.ca	37	12	112460309	112460309	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ERP29	NM_006817	exon3	c.G639T	p.G213G	.	.	36	4	41	0	.	90
ESRP2	80004	bcgsc.ca	37	16	68267677	68267677	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ESRP2	NM_024939	exon4	c.G550T	p.A184S	.	.	25	4	32	0	.	91
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	74019605	74019605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EVPL	NM_001988	exon3	c.C329A	p.P110Q	.	.	68	23	65	0	.	93
EXD3	54932	bcgsc.ca	37	9	140242544	140242544	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EXD3	NM_017820	exon17	c.A1977G	p.E659E	.	.	102	5	131	0	.	90
EYA3	2140	bcgsc.ca	37	1	28304953	28304953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EYA3	NM_001990	exon17	c.A1573G	p.R525G	.	.	131	5	147	0	.	93
EZH1	2145	bcgsc.ca	37	17	40871182	40871182	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	EZH1	NM_001991	exon8	c.C708A	p.I236I	.	.	109	5	58	0	.	229
F5	2153	bcgsc.ca	37	1	169510367	169510367	+	Missense_Mutation	SNP	T	T	G	rs112331368		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	F5	NM_000130	exon13	c.A3961C	p.I1321L	.	.	919	68	479	24	T|0.500;G|0.500	157
FAM120B	84498	bcgsc.ca	37	6	170700141	170700141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM120B	NM_032448	exon8	c.T2531C	p.V844A	.	.	101	5	114	0	.	91
FAM124B	79843	broad.mit.edu;bcgsc.ca	37	2	225244374	225244374	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM124B	NM_001122779	exon2	c.C1284T	p.T428T	.	.	103	6	71	0	.	92
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137284796	137284796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001101800	exon17	c.G1942A	p.G648S	.	.	180	19	150	0	.	.
FAM160B2	64760	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21959694	21959694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022749	exon15	c.C1860A	p.S620R	.	.	29	9	47	0	.	.
FAM175A	84142	bcgsc.ca	37	4	84383755	84383755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM175A	NM_139076	exon9	c.A1097G	p.Q366R	.	.	284	8	323	2	.	205
FAM183A	440585	bcgsc.ca	37	1	43621941	43621941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM183A	NM_001101376	exon4	c.A362G	p.Y121C	.	.	64	4	53	0	.	3
FAM204A	63877	bcgsc.ca	37	10	120095810	120095810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM204A	NM_001134672	exon2	c.A118G	p.S40G	.	.	175	6	140	1	.	91
FAM208B	54906	bcgsc.ca	37	10	5777484	5777484	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_017782	exon12	c.C1422A	p.P474P	.	.	275	9	163	0	.	.
FAM20A	54757	ucsc.edu	37	17	66538277	66538277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM20A	NM_017565	exon7	c.C958A	p.P320T	.	.	39	4	24	0	.	90
FAM96A	84191	bcgsc.ca	37	15	64380911	64380911	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAM96A	NM_032231	exon2	c.T264C	p.P88P	.	.	83	4	47	0	.	90
FANCD2	2177	bcgsc.ca	37	3	10122892	10122892	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FANCD2	NM_001018115	exon31	c.A3085G	p.N1029D	.	.	68	4	82	0	.	229
FANCM	57697	bcgsc.ca	37	14	45645166	45645166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FANCM	NM_020937	exon14	c.C3209A	p.P1070H	.	.	92	5	65	0	.	569
FANCM	57697	broad.mit.edu	37	14	45658023	45658023	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FANCM	NM_020937	exon20	c.A4798G	p.T1600A	.	.	177	5	113	0	.	569
FAT1	2195	broad.mit.edu	37	4	187549840	187549840	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAT1	NM_005245	exon8	c.A4401G	p.E1467E	.	.	164	6	184	0	.	34
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531317	92531317	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FAT3	NM_001008781	exon9	c.T5138A	p.I1713N	.	.	149	56	104	0	.	73
FBF1	85302	bcgsc.ca	37	17	73924205	73924205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBF1	NM_001080542	exon7	c.G307A	p.A103T	.	.	104	5	90	0	.	205
FBLN5	10516	bcgsc.ca	37	14	92349309	92349309	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBLN5	NM_006329	exon8	c.G851T	p.R284L	.	.	48	4	52	0	.	134
FBN2	2201	bcgsc.ca	37	5	127686618	127686618	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBN2	NM_001999	exon21	c.T2754C	p.S918S	.	.	65	4	55	0	.	146
FBXL13	222235	bcgsc.ca	37	7	102553615	102553615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXL13	NM_001111038	exon11	c.T926C	p.F309S	.	.	103	5	102	0	.	226
FBXO3	26273	bcgsc.ca	37	11	33790498	33790498	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXO3	NM_012175	exon3	c.T257C	p.V86A	.	.	109	5	82	0	.	227
FBXO33	254170	bcgsc.ca	37	14	39871012	39871012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXO33	NM_203301	exon3	c.T764C	p.L255P	.	.	53	5	46	0	.	658
FBXW11	23291	bcgsc.ca	37	5	171295802	171295802	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXW11	NM_012300	exon13	c.1468-2A>G	.	.	.	82	4	52	0	.	272
FBXW11	23291	bcgsc.ca	37	5	171337631	171337631	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXW11	NM_012300	exon3	c.T318A	p.H106Q	.	.	98	5	51	0	.	272
FBXW5	54461	ucsc.edu;bcgsc.ca	37	9	139837928	139837928	+	Missense_Mutation	SNP	C	C	T	rs141420875		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FBXW5	NM_018998	exon3	c.G224A	p.R75Q	.	.	48	4	60	1	C|1.000;T|0.000	226
FCAMR	83953	broad.mit.edu;bcgsc.ca	37	1	207134362	207134362	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCAMR	NM_001170631	exon6	c.A859G	p.T287A	.	.	143	8	101	0	.	91
FCRL3	115352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	157667132	157667132	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FCRL3	NM_052939	exon6	c.G642A	p.Q214Q	.	.	91	8	65	0	.	156
FDFT1	2222	bcgsc.ca	37	8	11696024	11696024	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FDFT1	NM_004462	exon8	c.T1160C	p.L387P	.	.	99	5	92	0	.	90
FDXACB1	91893	bcgsc.ca	37	11	111746164	111746164	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FDXACB1	NM_138378	exon5	c.A1357G	p.K453E	.	.	75	5	59	0	.	22
FEM1A	55527	bcgsc.ca	37	19	4793617	4793617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FEM1A	NM_018708	exon1	c.C1751A	p.P584Q	.	.	41	4	55	0	.	90
FGD3	89846	ucsc.edu	37	9	95792267	95792267	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FGD3	NM_001083536	exon15	c.C1669A	p.L557M	.	.	41	4	25	0	.	228
FGF14	2259	bcgsc.ca	37	13	102379082	102379082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FGF14	NM_175929	exon4	c.A502G	p.R168G	.	.	211	6	160	0	.	586
FGG	2266	bcgsc.ca	37	4	155533046	155533046	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FGG	NM_000509	exon4	c.G312T	p.M104I	.	.	75	4	41	0	.	90
FHL2	2274	bcgsc.ca	37	2	105977781	105977781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FHL2	NM_001039492	exon7	c.A799G	p.R267G	.	.	52	4	49	1	.	91
FICD	11153	bcgsc.ca	37	12	108913186	108913186	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FICD	NM_007076	exon3	c.G1311T	p.S437S	.	.	56	5	40	0	.	68
FIGN	55137	bcgsc.ca	37	2	164467107	164467107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FIGN	NM_018086	exon3	c.G1235A	p.G412E	.	.	53	4	38	0	.	156
FLG	2312	bcgsc.ca	37	1	152282209	152282209	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FLG	NM_002016	exon3	c.A5153G	p.Q1718R	.	.	127	6	89	0	.	106
FLJ44635	0	bcgsc.ca	37	X	71379959	71379959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FLJ44635	NM_207422	exon2	c.A280G	p.N94D	.	.	138	5	124	0	.	108
FMNL2	114793	bcgsc.ca	37	2	153471399	153471399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FMNL2	NM_052905	exon12	c.T1097C	p.V366A	.	.	158	7	122	0	.	516
FN1	2335	bcgsc.ca	37	2	216230336	216230336	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FN1	NM_212482	exon43	c.G7036T	p.G2346C	.	.	86	5	65	0	.	584
FN1	2335	bcgsc.ca	37	2	216246977	216246977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FN1	NM_212482	exon32	c.C5122T	p.P1708S	.	.	64	4	50	0	.	584
FNDC1	84624	ucsc.edu	37	6	159654340	159654340	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FNDC1	NM_032532	exon11	c.A2796G	p.T932T	.	.	54	4	50	0	.	138
FOXP1	27086	bcgsc.ca	37	3	71102880	71102880	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FOXP1	NM_001244815	exon3	c.C333T	p.P111P	.	.	126	6	81	0	.	415
FPGT	8790	bcgsc.ca	37	1	74670478	74670478	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FPGT	NM_003838	exon4	c.T747C	p.C249C	.	.	44	5	56	0	.	91
FRY	10129	bcgsc.ca	37	13	32818319	32818319	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FRY	NM_023037	exon47	c.A6828G	p.Q2276Q	.	.	80	4	61	0	.	142
FSCB	84075	bcgsc.ca	37	14	44974428	44974428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FSCB	NM_032135	exon1	c.A1763G	p.E588G	.	.	52	4	34	0	.	587
FTSJD1	55783	bcgsc.ca	37	16	71319137	71319137	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FTSJD1	NM_018348	exon3	c.T687C	p.V229V	.	.	51	4	91	0	.	91
FUT11	170384	bcgsc.ca	37	10	75533251	75533251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FUT11	NM_173540	exon2	c.G1012T	p.D338Y	.	.	69	4	64	0	.	90
FXR1	8087	bcgsc.ca	37	3	180675611	180675611	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FXR1	NM_001013438	exon10	c.A885G	p.K295K	.	.	391	9	249	0	.	153
FXYD5	53827	bcgsc.ca	37	19	35649275	35649275	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FXYD5	NM_014164	exon4	c.C171A	p.T57T	.	.	105	5	97	0	.	90
FZD10	11211	bcgsc.ca	37	12	130647857	130647857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FZD10	NM_007197	exon1	c.T370C	p.F124L	.	.	88	5	124	1	.	658
FZD8	8325	ucsc.edu	37	10	35929139	35929139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	FZD8	NM_031866	exon1	c.G1219T	p.G407C	.	.	34	4	40	0	.	612
G3BP2	9908	bcgsc.ca	37	4	76571557	76571557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	G3BP2	NM_012297	exon11	c.G1141A	p.D381N	.	.	110	5	125	0	.	153
GALNT15	117248	bcgsc.ca	37	3	16264174	16264174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_054110	exon9	c.T1682A	p.L561Q	.	.	81	4	76	0	.	.
GAPVD1	26130	bcgsc.ca	37	9	128122880	128122880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GAPVD1	NM_015635	exon26	c.G4199T	p.R1400L	.	.	200	6	196	0	.	93
GARNL3	84253	bcgsc.ca	37	9	130083059	130083059	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GARNL3	NM_032293	exon6	c.567+2T>C	.	.	.	61	4	29	0	.	516
GATA3	2625	bcgsc.ca	37	10	8111524	8111524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GATA3	NM_001002295	exon5	c.T1013C	p.V338A	.	.	80	6	56	0	.	1004
GATA6	2627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19780725	19780725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GATA6	NM_005257	exon7	c.C1727T	p.S576L	.	.	45	12	41	0	.	514
GCM2	9247	bcgsc.ca	37	6	10875119	10875119	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GCM2	NM_004752	exon5	c.C630A	p.P210P	.	.	85	4	38	0	.	92
GDE1	51573	ucsc.edu;bcgsc.ca	37	16	19533181	19533181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GDE1	NM_016641	exon1	c.G106A	p.G36S	.	.	32	4	39	0	.	70
GEMIN4	50628	bcgsc.ca	37	17	650671	650671	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GEMIN4	NM_015721	exon2	c.G612A	p.R204R	.	.	15	3	32	0	.	206
GFPT1	2673	ucsc.edu;bcgsc.ca	37	2	69581700	69581700	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GFPT1	NM_001244710	exon8	c.G606A	p.R202R	.	.	44	4	33	0	.	91
GH2	2689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61957832	61957832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GH2	NM_002059	exon5	c.C503A	p.S168Y	.	.	241	48	216	0	.	93
GHSR	2693	bcgsc.ca	37	3	172163248	172163248	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GHSR	NM_198407	exon2	c.G804T	p.V268V	.	.	89	5	78	0	.	501
GKN2	200504	bcgsc.ca	37	2	69177279	69177279	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GKN2	NM_182536	exon3	c.C183A	p.T61T	.	.	158	8	108	0	.	90
GLCE	26035	bcgsc.ca	37	15	69548156	69548156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GLCE	NM_015554	exon3	c.T11C	p.L4S	.	.	166	6	85	0	.	92
GLMN	11146	bcgsc.ca	37	1	92762965	92762965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GLMN	NM_053274	exon3	c.A161G	p.N54S	.	.	140	5	116	0	.	227
GLUD2	2747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	120182439	120182439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GLUD2	NM_012084	exon1	c.G901A	p.D301N	.	.	379	96	298	0	.	131
GMCL1P1	64396	bcgsc.ca	37	5	177613571	177613571	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	161	5	116	0	.	.
GMPS	8833	bcgsc.ca	37	3	155637103	155637103	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GMPS	NM_003875	exon10	c.T1294C	p.L432L	.	.	132	6	54	0	.	229
GPATCH8	23131	bcgsc.ca	37	17	42476158	42476158	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPATCH8	NM_001002909	exon8	c.A3287G	p.K1096R	.	.	80	4	74	0	.	94
GPD1	2819	bcgsc.ca	37	12	50501412	50501412	+	Silent	SNP	G	G	T	rs201027631	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPD1	NM_005276	exon6	c.G675T	p.A225A	.	.	122	5	103	0	G|0.999;A|0.001	90
GPI	2821	ucsc.edu;bcgsc.ca	37	19	34857692	34857692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPI	NM_001184722	exon4	c.A335G	p.K112R	.	.	39	4	31	0	.	228
GPR128	84873	bcgsc.ca	37	3	100413831	100413831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR128	NM_032787	exon16	c.A2380G	p.K794E	.	.	53	4	35	0	.	94
GPR150	285601	bcgsc.ca	37	5	94957199	94957199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR150	NM_199243	exon1	c.G1220T	p.R407L	.	.	21	4	25	0	.	90
GPR161	23432	broad.mit.edu;bcgsc.ca	37	1	168054960	168054960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR161	NM_001267609	exon7	c.G1459T	p.A487S	.	.	128	9	49	0	.	90
GPR174	84636	bcgsc.ca	37	X	78426655	78426655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR174	NM_032553	exon1	c.A151G	p.T51A	.	.	136	5	94	0	.	130
GPR63	81491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97247241	97247241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPR63	NM_030784	exon2	c.C367A	p.L123I	.	.	55	13	45	0	.	92
GPRASP1	9737	bcgsc.ca	37	X	101909254	101909254	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GPRASP1	NM_001099411	exon3	c.A413G	p.D138G	.	.	142	5	118	1	.	131
GRAMD2	196996	bcgsc.ca	37	15	72455807	72455807	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRAMD2	NM_001012642	exon10	c.A756G	p.R252R	.	.	89	5	64	0	.	90
GRB7	2886	ucsc.edu;bcgsc.ca	37	17	37902252	37902252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRB7	NM_001242442	exon13	c.G1426T	p.G476C	.	.	38	4	44	0	.	848
GREB1L	80000	bcgsc.ca	37	18	19098178	19098178	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001142966	exon31	c.C5455A	p.L1819I	.	.	113	5	96	0	.	.
GRIK2	2898	bcgsc.ca	37	6	102516311	102516311	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRIK2	NM_021956	exon16	c.T2652C	p.I884I	.	.	95	6	84	0	.	157
GRIP2	80852	bcgsc.ca	37	3	14561938	14561938	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRIP2	.	.	.	.	.	.	127	5	149	0	.	69
GRM7	2917	bcgsc.ca	37	3	7620558	7620558	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRM7	NM_000844	exon8	c.T1965C	p.C655C	.	.	105	5	102	0	.	526
GRXCR2	643226	bcgsc.ca	37	5	145246273	145246273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GRXCR2	NM_001080516	exon2	c.T355C	p.F119L	.	.	138	5	88	0	.	22
GSPT1	2935	bcgsc.ca	37	16	11969772	11969772	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GSPT1	NM_002094	exon14	c.G1707T	p.L569F	.	.	163	5	163	1	.	206
GTF2F2	2963	bcgsc.ca	37	13	45710912	45710912	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	GTF2F2	NM_004128	exon2	c.A111G	p.R37R	.	.	97	6	81	0	.	90
GUCY1B2	2974	broad.mit.edu;ucsc.edu;mdanderson.org	37	13	51591120	51591120	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	92	13	104	2	.	.
HADHA	3030	bcgsc.ca	37	2	26459839	26459839	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HADHA	NM_000182	exon4	c.A198G	p.K66K	.	.	65	4	57	0	.	91
HAUS3	79441	bcgsc.ca	37	4	2240704	2240704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HAUS3	NM_024511	exon3	c.A976G	p.K326E	.	.	131	5	96	0	.	138
HDAC10	83933	bcgsc.ca	37	22	50688101	50688101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HDAC10	NM_032019	exon6	c.G526T	p.G176C	.	.	52	4	36	1	.	226
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50687294	50687294	+	Missense_Mutation	SNP	G	G	A	rs199648733		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HDAC10	NM_032019	exon9	c.C782T	p.S261L	.	.	36	4	33	0	G|0.999;A|0.000	226
HECTD4	283450	bcgsc.ca	37	12	112708121	112708121	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001109662	exon12	c.A1653G	p.A551A	.	.	93	5	89	0	.	.
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62199797	62199797	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001037335	exon6	c.C1644T	p.T548T	.	.	51	4	49	0	.	.
HEPHL1	341208	bcgsc.ca	37	11	93844112	93844112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HEPHL1	NM_001098672	exon18	c.G3089A	p.G1030E	.	.	63	4	50	0	.	71
HID1	283987	bcgsc.ca	37	17	72955999	72955999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_030630	exon8	c.C985A	p.L329M	.	.	59	4	53	0	.	.
HIPK1	204851	bcgsc.ca	37	1	114511062	114511062	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HIPK1	NM_152696	exon13	c.2565-2A>G	.	.	.	114	5	152	0	.	361
HMCN1	83872	bcgsc.ca	37	1	186143745	186143745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HMCN1	NM_031935	exon103	c.G15914T	p.R5305L	.	.	130	5	86	0	.	113
HMGCS1	3157	bcgsc.ca	37	5	43294193	43294193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HMGCS1	NM_001098272	exon8	c.T1148C	p.L383P	.	.	109	7	88	0	.	90
HNRNPA1	3178	bcgsc.ca	37	12	54676260	54676260	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HNRNPA1	NM_002136	exon5	c.C573T	p.S191S	.	.	69	4	55	0	.	93
HNRNPH1	3187	bcgsc.ca	37	5	179044857	179044857	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HNRNPH1	NM_001257293	exon8	c.A864G	p.G288G	.	.	93	7	88	0	.	22
HNRNPU	3192	bcgsc.ca	37	1	245020159	245020159	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HNRNPU	NM_004501	exon10	c.1558-1G>T	.	.	.	167	6	130	0	.	22
HOOK2	29911	bcgsc.ca	37	19	12883436	12883436	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HOOK2	NM_001100176	exon6	c.C447T	p.A149A	.	.	51	4	41	0	.	92
HOOK3	84376	bcgsc.ca	37	8	42829261	42829261	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HOOK3	NM_032410	exon13	c.A1245G	p.T415T	.	.	123	5	112	0	.	154
HPS5	11234	bcgsc.ca	37	11	18327868	18327868	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HPS5	NM_181507	exon7	c.A638G	p.K213R	.	.	94	5	76	0	.	133
HSD17B12	51144	bcgsc.ca	37	11	43876762	43876762	+	Silent	SNP	A	A	G	rs142415588	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HSD17B12	NM_016142	exon11	c.A903G	p.T301T	.	.	91	6	72	0	A|1.000;C|0.000	90
HSDL1	83693	bcgsc.ca	37	16	84164894	84164894	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HSDL1	NM_031463	exon3	c.C33T	p.Y11Y	.	.	61	4	89	0	.	90
HSP90AB4P	664618	ucsc.edu	37	15	58983318	58983318	+	RNA	SNP	G	G	C	rs7179724	byfrequency	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	21	5	11	0	G|0.758;C|0.242	.
HSPG2	3339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22173039	22173039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HSPG2	NM_005529	exon63	c.G8218A	p.E2740K	.	.	70	8	88	0	.	141
HTR3A	3359	bcgsc.ca	37	11	113852031	113852031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HTR3A	NM_000869	exon4	c.A389G	p.E130G	.	.	51	4	57	0	.	90
HYDIN	54768	ucsc.edu;bcgsc.ca	37	16	70884538	70884538	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	HYDIN	NM_001270974	exon74	c.T12464C	p.F4155S	.	.	41	4	43	0	.	92
IARS	3376	bcgsc.ca	37	9	95050515	95050515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IARS	NM_013417	exon3	c.G169A	p.G57R	.	.	152	5	103	0	.	92
IDO2	169355	bcgsc.ca	37	8	39873025	39873025	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IDO2	NM_194294	exon11	c.T1167C	p.A389A	.	.	76	5	56	0	.	24
IDS	3423	bcgsc.ca	37	X	148582507	148582507	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IDS	NM_006123	exon4	c.T480C	p.P160P	.	.	94	4	86	0	.	130
IFFO2	126917	ucsc.edu	37	1	19237904	19237904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001136265	exon7	c.T1291G	p.Y431D	.	.	40	4	55	1	.	.
IFRD2	7866	bcgsc.ca	37	3	50326730	50326730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IFRD2	NM_006764	exon8	c.G1033T	p.G345C	.	.	122	8	120	0	.	212
IFT172	26160	bcgsc.ca	37	2	27700124	27700124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IFT172	NM_015662	exon13	c.G1285T	p.G429C	.	.	89	5	85	0	.	154
IGDCC4	57722	ucsc.edu	37	15	65678952	65678952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IGDCC4	NM_020962	exon17	c.T2888C	p.V963A	.	.	48	5	22	1	.	93
IGSF9	57549	bcgsc.ca	37	1	159899157	159899157	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IGSF9	NM_001135050	exon18	c.G2353T	p.G785W	.	.	166	8	105	1	.	156
IL19	29949	bcgsc.ca	37	1	207010091	207010091	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IL19	NM_153758	exon2	c.T198C	p.C66C	.	.	91	5	78	0	.	91
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27460454	27460454	+	Silent	SNP	G	G	T	rs56002407	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IL21R	NM_181079	exon10	c.G1533T	p.T511T	.	.	22	11	48	0	G|0.999;A|0.001	660
INADL	10207	bcgsc.ca	37	1	62582302	62582302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	INADL	NM_176877	exon36	c.G4754T	p.G1585V	.	.	53	5	38	0	.	94
INPP5F	22876	bcgsc.ca	37	10	121563787	121563787	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	INPP5F	NM_014937	exon10	c.T1219C	p.S407P	.	.	59	4	54	0	.	229
INSR	3643	bcgsc.ca	37	19	7119583	7119583	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	INSR	NM_000208	exon21	c.T3671C	p.V1224A	.	.	49	4	55	0	.	1381
INTS10	55174	bcgsc.ca	37	8	19680927	19680927	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	INTS10	NM_018142	exon6	c.T639C	p.S213S	.	.	77	4	74	0	.	91
INTS2	57508	bcgsc.ca	37	17	60003765	60003765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	INTS2	NM_020748	exon2	c.T265C	p.S89P	.	.	72	4	59	0	.	206
IP6K2	51447	bcgsc.ca	37	3	48727073	48727073	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IP6K2	NM_016291	exon5	c.A678G	p.R226R	.	.	129	6	132	0	.	265
IPO11	51194	bcgsc.ca	37	5	61833068	61833068	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IPO11	NM_001134779	exon24	c.T2322C	p.C774C	.	.	175	6	117	0	.	227
IPO5	3843	bcgsc.ca	37	13	98658401	98658401	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IPO5	NM_002271	exon17	c.C1569A	p.T523T	.	.	83	4	39	0	.	228
IPP	3652	bcgsc.ca	37	1	46193466	46193466	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IPP	NM_001145349	exon5	c.A885G	p.G295G	.	.	37	4	31	0	.	91
IRAK1BP1	134728	bcgsc.ca	37	6	79607851	79607851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IRAK1BP1	NM_001010844	exon4	c.C583A	p.Q195K	.	.	67	4	71	0	.	90
IRF4	3662	bcgsc.ca	37	6	401736	401736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IRF4	NM_002460	exon7	c.A1058G	p.D353G	.	.	101	6	61	0	.	659
IRGQ	126298	ucsc.edu;bcgsc.ca	37	19	44097315	44097315	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	IRGQ	NM_001007561	exon3	c.G735A	p.L245L	.	.	24	4	51	0	.	92
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52233253	52233253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	ITGA1,NS,carcinoma,+1	ITGA1	NM_181501	exon24	c.C2987T	p.P996L	.	.	197	73	143	0	.	228
ITGA2	3673	bcgsc.ca	37	5	52347280	52347280	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ITGA2	NM_002203	exon7	c.T670C	p.F224L	.	.	118	8	107	0	.	226
ITPR3	3710	bcgsc.ca	37	6	33626808	33626808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ITPR3	NM_002224	exon6	c.G539T	p.G180V	.	.	55	4	49	0	.	1085
JAKMIP2	9832	bcgsc.ca	37	5	147029931	147029931	+	Silent	SNP	T	T	C	rs138577792	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	JAKMIP2	NM_001270941	exon4	c.A807G	p.A269A	.	.	109	6	84	0	T|1.000;G|0.000	154
JMJD1C	221037	bcgsc.ca	37	10	64960301	64960301	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	JMJD1C	NM_032776	exon11	c.T5211C	p.I1737I	.	.	194	6	113	0	.	275
KATNA1	11104	ucsc.edu;bcgsc.ca	37	6	149922743	149922743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KATNA1	NM_007044	exon7	c.T875C	p.L292P	.	.	37	4	56	0	.	91
KBTBD2	25948	bcgsc.ca	37	7	32910269	32910269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KBTBD2	NM_015483	exon4	c.A560G	p.N187S	.	.	56	4	49	0	.	90
KCNF1	3754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	11053487	11053487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNF1	NM_002236	exon1	c.C935T	p.T312I	.	.	68	19	60	0	.	91
KCNK3	3777	bcgsc.ca	37	2	26915836	26915836	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNK3	NM_002246	exon1	c.G93T	p.S31S	.	.	21	4	21	0	.	91
KCNK5	8645	bcgsc.ca	37	6	39159255	39159255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNK5	NM_003740	exon5	c.T911C	p.L304P	.	.	86	4	77	0	.	227
KCNT2	343450	bcgsc.ca	37	1	196398714	196398714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KCNT2	NM_198503	exon9	c.C812A	p.P271H	.	.	184	6	113	0	.	159
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6793123	6793123	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDM4C	NM_001146696	exon2	c.T201C	p.G67G	.	.	74	27	37	0	.	228
KDM5A	5927	bcgsc.ca	37	12	493235	493235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDM5A	NM_001042603	exon3	c.G328A	p.V110I	.	.	97	5	59	0	.	227
KDSR	2531	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	61018193	61018193	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KDSR	NM_002035	exon6	c.A537C	p.G179G	.	.	54	8	57	0	.	227
KHDRBS1	10657	bcgsc.ca	37	1	32502545	32502545	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KHDRBS1	NM_006559	exon5	c.T806A	p.L269Q	.	.	83	4	100	0	.	227
KIAA1109	84162	bcgsc.ca	37	4	123159374	123159374	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1109	NM_015312	exon26	c.A3702G	p.E1234E	.	.	91	4	76	0	.	80
KIAA1109	84162	bcgsc.ca	37	4	123166197	123166197	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1109	NM_015312	exon30	c.T4939C	p.C1647R	.	.	72	5	57	0	.	80
KIAA1239	57495	bcgsc.ca	37	4	37440702	37440702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001144990	exon6	c.G986A	p.G329D	.	.	85	5	48	0	.	.
KIAA1324L	222223	bcgsc.ca	37	7	86567478	86567478	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1324L	NM_001142749	exon8	c.T1053C	p.Y351Y	.	.	65	4	42	0	.	97
KIAA1407	57577	broad.mit.edu	37	3	113750589	113750589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1407	NM_020817	exon7	c.T856C	p.S286P	.	.	314	7	158	0	.	92
KIAA1430	57587	bcgsc.ca	37	4	186112185	186112185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1430	NM_020827	exon2	c.G166A	p.G56R	.	.	283	7	281	0	.	68
KIAA1432	57589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5742973	5742973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1432	NM_001206557	exon9	c.T1006G	p.F336V	.	.	328	115	253	0	.	90
KIAA1468	57614	bcgsc.ca	37	18	59888730	59888730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1468	NM_020854	exon5	c.G858T	p.Q286H	.	.	287	8	135	0	.	158
KIAA1468	57614	broad.mit.edu;bcgsc.ca	37	18	59942653	59942653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1468	NM_020854	exon22	c.G2914A	p.G972S	.	.	124	14	114	0	.	158
KIAA1598	57698	bcgsc.ca	37	10	118671306	118671306	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIAA1598	NM_001127211	exon14	c.A1354G	p.I452V	.	.	150	5	151	0	.	90
KIF11	3832	bcgsc.ca	37	10	94381141	94381141	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIF11	NM_004523	exon10	c.1129-1G>T	.	.	.	47	4	31	0	.	227
KIF13A	63971	bcgsc.ca	37	6	17794571	17794571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KIF13A	NM_001105567	exon25	c.T3131C	p.L1044P	.	.	86	5	50	0	.	137
KLF10	7071	bcgsc.ca	37	8	103663951	103663951	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KLF10	NM_005655	exon3	c.C609A	p.A203A	.	.	54	4	62	0	.	226
KLHL24	54800	bcgsc.ca	37	3	183369018	183369018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KLHL24	NM_017644	exon3	c.C874A	p.H292N	.	.	81	4	57	0	.	91
KLHL34	257240	ucsc.edu;bcgsc.ca	37	X	21675562	21675562	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KLHL34	NM_153270	exon1	c.G345A	p.L115L	.	.	40	4	41	0	.	131
KNTC1	9735	bcgsc.ca	37	12	123087224	123087224	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KNTC1	NM_014708	exon46	c.C4762A	p.Q1588K	.	.	94	5	101	1	.	543
KRR1	11103	bcgsc.ca	37	12	75893688	75893688	+	Missense_Mutation	SNP	C	C	A	rs77063640	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRR1	NM_007043	exon10	c.G1047T	p.K349N	.	.	134	5	66	0	C|0.997;T|0.003	92
KRT16P2	400578	ucsc.edu	37	17	16735090	16735090	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	56	6	80	0	.	.
KRT42P	284116	ucsc.edu	37	17	39786742	39786742	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	48	4	60	0	.	.
KRT78	196374	ucsc.edu	37	12	53233006	53233006	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRT78	NM_173352	exon9	c.A1454C	p.D485A	.	.	50	6	25	1	.	188
KRT81	3887	bcgsc.ca	37	12	52681411	52681411	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRT81	NM_002281	exon6	c.T995C	p.L332P	.	.	118	6	138	0	.	90
KRTAP13-3	337960	bcgsc.ca	37	21	31797814	31797814	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRTAP13-3	NM_181622	exon1	c.C417A	p.S139S	.	.	59	5	54	0	.	92
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	116	40	120	1	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	91	16	102	0	C|0.500;T|0.500	91
LACC1	144811	bcgsc.ca	37	13	44455656	44455656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001128303	exon2	c.A535G	p.T179A	.	.	47	4	45	0	.	.
LAMA1	284217	bcgsc.ca	37	18	6959387	6959387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LAMA1	NM_005559	exon54	c.C7731A	p.T2577T	.	.	73	4	75	0	.	149
LAMA5	3911	ucsc.edu	37	20	60891966	60891966	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LAMA5	NM_005560	exon56	c.C7625A	p.A2542D	.	.	9	2	21	0	.	93
LAMA5	3911	ucsc.edu	37	20	60904884	60904884	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LAMA5	NM_005560	exon32	c.C4068T	p.H1356H	.	.	50	4	73	0	.	93
LCAT	3931	bcgsc.ca	37	16	67977051	67977051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LCAT	NM_000229	exon2	c.G219A	p.M73I	.	.	47	4	48	0	.	44
LEPROT	54741	bcgsc.ca	37	1	65895588	65895588	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LEPROT	NM_001198681	exon4	c.C163A	p.P55T	.	.	147	5	180	0	.	90
LETMD1	25875	ucsc.edu;bcgsc.ca	37	12	51449625	51449625	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LETMD1	NM_001243689	exon5	c.T520C	p.F174L	.	.	52	5	54	0	.	90
LHX9	56956	bcgsc.ca	37	1	197889273	197889273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LHX9	NM_020204	exon2	c.G346T	p.G116C	.	.	81	4	61	0	.	91
LILRA5	353514	bcgsc.ca	37	19	54823871	54823871	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LILRA5	NM_181879	exon2	c.T24C	p.S8S	.	.	29	4	34	0	.	91
LIMCH1	22998	bcgsc.ca	37	4	41689890	41689890	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIMCH1	NM_014988	exon24	c.T2970C	p.P990P	.	.	107	6	81	0	.	26
LIMK2	3985	bcgsc.ca	37	22	31654312	31654312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIMK2	NM_005569	exon3	c.A152T	p.Y51F	.	.	120	5	94	0	.	548
LIPI	149998	ucsc.edu;bcgsc.ca	37	21	15579152	15579152	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIPI	NM_198996	exon1	c.T93C	p.V31V	.	.	33	6	21	0	.	70
LIPK	643414	bcgsc.ca	37	10	90484386	90484386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LIPK	NM_001080518	exon1	c.C86A	p.P29H	.	.	161	6	85	0	.	24
LOC100131320	0	ucsc.edu	37	2	130725851	130725851	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	39	5	14	0	.	.
LOC729911	0	bcgsc.ca	37	15	79529234	79529234	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	136	6	64	0	.	.
LOXHD1	125336	bcgsc.ca	37	18	44057694	44057694	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_144612	exon40	c.G6377T	p.R2126L	.	.	65	4	50	0	.	.
LRFN1	57622	ucsc.edu;bcgsc.ca	37	19	39804874	39804874	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN1	NM_020862	exon1	c.T1103C	p.F368S	.	.	21	4	34	0	.	70
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356583	42356583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRFN5	NM_152447	exon3	c.G755A	p.R252K	.	.	84	9	65	0	.	97
LRP1B	53353	bcgsc.ca	37	2	141643894	141643894	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRP1B	NM_018557	exon24	c.A3777G	p.E1259E	.	.	135	5	95	0	.	311
LRP6	4040	bcgsc.ca	37	12	12318118	12318118	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRP6	NM_002336	exon8	c.C1657A	p.R553S	.	.	138	6	104	0	.	661
LRRC45	201255	ucsc.edu	37	17	79982154	79982154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRRC45	NM_144999	exon2	c.G221T	p.G74V	.	.	13	4	16	0	.	91
LRRC6	23639	ucsc.edu;bcgsc.ca	37	8	133673830	133673830	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRRC6	NM_012472	exon2	c.T54C	p.C18C	.	.	47	5	29	0	.	92
LRRTM3	347731	bcgsc.ca	37	10	68686737	68686737	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LRRTM3	NM_178011	exon2	c.T63C	p.T21T	.	.	68	4	62	0	.	93
LSG1	55341	ucsc.edu;bcgsc.ca	37	3	194380824	194380824	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LSG1	NM_018385	exon6	c.T560C	p.L187P	.	.	54	5	49	0	.	90
LY6H	4062	broad.mit.edu	37	8	144239671	144239671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY6H	NM_001135655	exon4	c.C482A	p.P161H	.	.	22	3	37	0	.	90
LY75	4065	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737645	160737645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.G1353T	p.E451D	.	.	120	50	83	1	.	90
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160737646	160737646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY75	NM_002349	exon8	c.A1352T	p.E451V	.	.	119	49	83	0	.	90
LY9	4063	bcgsc.ca	37	1	160766069	160766069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LY9	NM_001261457	exon1	c.T92C	p.V31A	.	.	272	7	151	0	.	91
LYAR	55646	bcgsc.ca	37	4	4275381	4275381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LYAR	NM_017816	exon8	c.A848G	p.K283R	.	.	83	4	94	0	.	90
LZTR1	8216	ucsc.edu	37	22	21350052	21350052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	LZTR1	NM_006767	exon17	c.G1960T	p.D654Y	.	.	30	4	48	0	.	280
MACF1	23499	bcgsc.ca	37	1	39824478	39824478	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MACF1	NM_012090	exon42	c.A5867T	p.E1956V	.	.	67	4	45	0	.	165
MAD1L1	8379	ucsc.edu;bcgsc.ca	37	7	2041757	2041757	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAD1L1	NM_003550	exon15	c.1360-1G>A	.	.	.	37	4	29	0	.	1083
MAGEB3	4114	bcgsc.ca	37	X	30254822	30254822	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAGEB3	NM_002365	exon5	c.C781A	p.R261R	.	.	177	6	184	0	.	130
MAGED2	10916	bcgsc.ca	37	X	54835783	54835783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAGED2	NM_201222	exon2	c.A19G	p.S7G	.	.	119	7	102	0	.	195
MAGI1	9223	ucsc.edu	37	3	65607746	65607746	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAGI1	NM_001033057	exon2	c.G331T	p.D111Y	.	.	38	4	27	0	.	661
MAN1A1	4121	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119511012	119511012	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A1	NM_005907	exon10	c.G1363A	p.G455R	.	.	49	13	76	1	.	517
MAN1A2	10905	bcgsc.ca	37	1	117945019	117945019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A2	NM_006699	exon2	c.C514A	p.P172T	.	.	266	8	320	0	.	90
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118035855	118035855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN1A2	NM_006699	exon9	c.G1255T	p.A419S	.	.	74	24	91	0	.	90
MAN2B1	4125	bcgsc.ca	37	19	12757482	12757482	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAN2B1	NM_000528	exon24	c.A2988G	p.E996E	.	.	138	6	147	0	.	94
MAP1A	4130	bcgsc.ca	37	15	43816782	43816782	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAP1A	NM_002373	exon4	c.A3111G	p.P1037P	.	.	38	5	31	0	.	141
MAP3K6	9064	bcgsc.ca	37	1	27687837	27687837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAP3K6	NM_004672	exon12	c.G1736T	p.S579I	.	.	26	4	44	0	.	1523
MAP4K1	11184	ucsc.edu	37	19	39108474	39108474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAP4K1	NM_007181	exon1	c.A62G	p.Q21R	.	.	44	4	59	0	.	980
MAS1	4142	bcgsc.ca	37	6	160328716	160328716	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MAS1	NM_002377	exon1	c.C729T	p.P243P	.	.	88	5	77	0	.	524
MB21D2	151963	bcgsc.ca	37	3	192517248	192517248	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MB21D2	NM_178496	exon2	c.A403G	p.T135A	.	.	70	4	65	0	.	70
MC5R	4161	bcgsc.ca	37	18	13825959	13825959	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MC5R	NM_005913	exon1	c.A195G	p.K65K	.	.	57	5	61	0	.	526
MCF2L2	23101	bcgsc.ca	37	3	183017820	183017820	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MCF2L2	NM_015078	exon11	c.C1278A	p.S426S	.	.	130	6	98	0	.	293
MCMDC2	157777	bcgsc.ca	37	8	67809044	67809044	+	Silent	SNP	G	G	T	rs200374733	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_173518	exon12	c.G1476T	p.V492V	.	.	113	5	71	0	G|0.999;A|0.001	.
MCOLN1	57192	bcgsc.ca	37	19	7594019	7594019	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MCOLN1	NM_020533	exon10	c.C1167T	p.L389L	.	.	34	4	54	0	.	153
MED17	9440	bcgsc.ca	37	11	93523905	93523905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MED17	NM_004268	exon3	c.A583G	p.K195E	.	.	79	4	47	0	.	187
MED6	10001	bcgsc.ca	37	14	71060077	71060077	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MED6	NM_005466	exon4	c.A293T	p.Y98F	.	.	56	5	32	0	.	90
MERTK	10461	bcgsc.ca	37	2	112760679	112760679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MERTK	NM_006343	exon12	c.G1701T	p.L567F	.	.	177	6	82	0	.	1463
METAP1	23173	bcgsc.ca	37	4	99966340	99966340	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_015143	exon8	c.T666C	p.T222T	.	.	55	4	76	0	.	.
MFN1	55669	bcgsc.ca	37	3	179093036	179093036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MFN1	NM_033540	exon10	c.C1004T	p.T335I	.	.	136	5	107	0	.	155
MGAM	8972	bcgsc.ca	37	7	141755404	141755404	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MGAM	NM_004668	exon28	c.C3361A	p.R1121S	.	.	125	6	81	1	.	70
MIB1	57534	bcgsc.ca	37	18	19345826	19345826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MIB1	NM_020774	exon2	c.T323C	p.L108S	.	.	65	4	60	0	.	526
MICAL3	57553	ucsc.edu	37	22	18324699	18324699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MICAL3	NM_015241	exon20	c.G2690A	p.R897H	.	.	31	4	24	0	.	68
MIER3	166968	bcgsc.ca	37	5	56233496	56233496	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MIER3	NM_152622	exon5	c.T345C	p.G115G	.	.	103	5	65	0	.	90
MIPEP	4285	bcgsc.ca	37	13	24463324	24463324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MIPEP	NM_005932	exon1	c.G136T	p.A46S	.	.	37	4	37	0	.	90
MIR425	494337	ucsc.edu;mdanderson.org	37	3	49057609	49057609	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	39	9	38	0	.	.
MIS18BP1	55320	bcgsc.ca	37	14	45693890	45693890	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MIS18BP1	NM_018353	exon11	c.T1900C	p.S634P	.	.	146	5	104	0	.	90
MKS1	54903	bcgsc.ca	37	17	56288024	56288024	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MKS1	NM_017777	exon11	c.T1020C	p.T340T	.	.	79	4	48	0	.	91
MLL3	58508	bcgsc.ca	37	7	151835881	151835881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MLL3	NM_170606	exon58	c.G14643T	p.E4881D	.	.	155	6	127	0	.	1398
MLLT10P1	140678	bcgsc.ca	37	20	29637999	29637999	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	50	7	39	0	.	.
MLXIP	22877	ucsc.edu;bcgsc.ca	37	12	122622025	122622025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MLXIP	NM_014938	exon12	c.G2042T	p.C681F	.	.	42	4	40	0	.	92
MMP1	4312	bcgsc.ca	37	11	102668133	102668133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MMP1	NM_002421	exon2	c.G204T	p.Q68H	.	.	154	6	100	0	.	229
MORC3	23515	broad.mit.edu;bcgsc.ca	37	21	37741557	37741557	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MORC3	NM_015358	exon15	c.C1891A	p.R631R	.	.	157	7	132	1	.	92
MOSPD2	158747	bcgsc.ca	37	X	14933866	14933866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MOSPD2	NM_152581	exon12	c.T1166C	p.I389T	.	.	214	7	181	0	.	130
MPP4	58538	bcgsc.ca	37	2	202557715	202557715	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MPP4	NM_033066	exon3	c.G117A	p.L39L	.	.	52	4	60	0	.	22
MPP6	51678	bcgsc.ca	37	7	24681485	24681485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MPP6	NM_016447	exon4	c.C268A	p.Q90K	.	.	82	4	68	0	.	90
MRE11A	4361	bcgsc.ca	37	11	94170372	94170372	+	Silent	SNP	G	G	T	rs137852759	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRE11A	NM_005591	exon17	c.C1897A	p.R633R	.	.	197	9	100	0	.	722
MRPL20	55052	bcgsc.ca	37	1	1342318	1342318	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPL20	NM_017971	exon2	c.C169A	p.R57R	.	.	48	4	58	0	.	22
MRPL2	51069	bcgsc.ca	37	6	43023644	43023644	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPL2	NM_015950	exon5	c.C622A	p.R208R	.	.	51	4	35	0	.	90
MRPS16	51021	ucsc.edu	37	10	75008965	75008965	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPS16	.	.	.	.	.	.	103	1	73	1	.	90
MRPS22	56945	bcgsc.ca	37	3	139067044	139067044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPS22	NM_020191	exon3	c.A382G	p.M128V	.	.	54	4	51	0	.	93
MRPS31	10240	bcgsc.ca	37	13	41303545	41303545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPS31	NM_005830	exon7	c.A1151G	p.K384R	.	.	216	7	93	0	.	226
MRPS7	51081	bcgsc.ca	37	17	73258760	73258760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MRPS7	NM_015971	exon2	c.C266A	p.P89Q	.	.	95	5	41	0	.	90
MS4A7	58475	bcgsc.ca	37	11	60157018	60157018	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MS4A7	NM_021201	exon5	c.T495C	p.Y165Y	.	.	83	5	52	0	.	91
MSH6	2956	bcgsc.ca	37	2	48027935	48027935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MSH6	NM_000179	exon4	c.A2813G	p.D938G	.	.	68	5	62	1	.	3014
MSH6	2956	bcgsc.ca	37	2	48032144	48032144	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MSH6	NM_000179	exon6	c.T3534C	p.G1178G	.	.	182	7	134	0	.	3014
MSN	4478	bcgsc.ca	37	X	64947750	64947750	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MSN	NM_002444	exon3	c.C171A	p.T57T	.	.	204	7	169	0	.	1086
MTM1	4534	bcgsc.ca	37	X	149828870	149828870	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTM1	NM_000252	exon13	c.A1380G	p.E460E	.	.	121	5	95	0	.	228
MTMR12	54545	bcgsc.ca	37	5	32270950	32270950	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTMR12	NM_001040446	exon5	c.G462A	p.R154R	.	.	255	7	130	1	.	227
MTMR7	9108	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	17198903	17198903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTMR7	NM_004686	exon6	c.A701G	p.D234G	.	.	34	12	42	0	.	91
MTOR	2475	bcgsc.ca	37	1	11272431	11272431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTOR	NM_004958	exon23	c.C3499A	p.P1167T	.	.	43	4	77	0	.	1439
MTTP	4547	bcgsc.ca	37	4	100518347	100518347	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MTTP	NM_000253	exon9	c.C1033A	p.L345I	.	.	14	3	21	0	.	93
MUC5B	727897	broad.mit.edu	37	11	1263912	1263912	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_002458	exon31	c.C5802T	p.P1934P	.	.	267	5	288	1	.	.
MXRA5	25878	bcgsc.ca	37	X	3240683	3240683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MXRA5	NM_015419	exon5	c.T3043C	p.S1015P	.	.	211	6	185	0	.	136
MYH15	22989	bcgsc.ca	37	3	108195337	108195337	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	MYH15	NM_014981	exon13	c.G1200T	p.M400I	.	.	159	5	117	0	.	73
NAF1	92345	bcgsc.ca	37	4	164069523	164069523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NAF1	NM_138386	exon3	c.G604T	p.G202W	.	.	154	5	132	0	.	70
NAPA	8775	bcgsc.ca	37	19	48006742	48006742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NAPA	NM_003827	exon2	c.A116G	p.E39G	.	.	182	6	178	0	.	90
NAT10	55226	bcgsc.ca	37	11	34167730	34167730	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NAT10	NM_024662	exon29	c.G3069A	p.R1023R	.	.	131	6	90	0	.	92
NBAS	51594	bcgsc.ca	37	2	15694185	15694185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NBAS	NM_015909	exon4	c.G287T	p.S96I	.	.	85	5	43	0	.	94
NCAM1	4684	broad.mit.edu;bcgsc.ca	37	11	113130930	113130930	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCAM1	NM_001242607	exon18	c.G2094T	p.K698N	.	.	92	7	74	0	.	23
NCF2	4688	bcgsc.ca	37	1	183543757	183543757	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCF2	NM_001127651	exon6	c.367-1G>T	.	.	.	138	6	62	0	.	93
NCLN	56926	bcgsc.ca	37	19	3186068	3186068	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCLN	NM_020170	exon1	c.A40G	p.K14E	.	.	70	6	73	0	.	90
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	124821719	124821753	+	Frame_Shift_Del	DEL	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	AGGTGGACCTGGGGGAGGAGAGAAGGCGGTCAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NCOR2	NM_006312	exon40	c.5688_5695del	p.1896_1899del	.	.	134	16	303	0	.	229
ND5	0	bcgsc.ca	37	MT	14074	14074	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	ENST00000361567	exon1	c.C1738A	p.Q580K	.	.	223	6	180	1	.	.
NEDD4L	23327	bcgsc.ca	37	18	55996245	55996245	+	Silent	SNP	G	G	T	rs200935222	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEDD4L	NM_015277	exon10	c.G699T	p.S233S	.	.	90	4	88	0	G|0.999;A|0.001	658
NEK11	79858	broad.mit.edu;bcgsc.ca	37	3	130828741	130828741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEK11	NM_024800	exon5	c.T431C	p.L144P	.	.	252	19	163	0	.	848
NEU4	129807	ucsc.edu	37	2	242757918	242757918	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEU4	NM_001167599	exon4	c.C1038A	p.P346P	.	.	42	4	52	0	.	44
NEUROG2	63973	bcgsc.ca	37	4	113436309	113436309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NEUROG2	NM_024019	exon2	c.G323A	p.R108H	.	.	66	4	123	0	.	92
NF2	4771	bcgsc.ca	37	22	30077503	30077503	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NF2	NM_000268	exon15	c.A1650G	p.K550K	.	.	78	4	66	0	.	4696
NFAT5	10725	bcgsc.ca	37	16	69689567	69689567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NFAT5	NM_001113178	exon6	c.G1061T	p.G354V	.	.	66	4	111	0	.	90
NFE2L3	9603	bcgsc.ca	37	7	26223359	26223359	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NFE2L3	NM_004289	exon3	c.A789G	p.E263E	.	.	68	4	68	0	.	94
NFIB	4781	bcgsc.ca	37	9	14306986	14306986	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NFIB	NM_001190738	exon3	c.640+2T>C	.	.	.	58	4	53	0	.	226
NFKB1	4790	bcgsc.ca	37	4	103527768	103527768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NFKB1	NM_003998	exon17	c.C1868A	p.A623D	.	.	89	5	109	0	.	912
NFKB2	4791	bcgsc.ca	37	10	104157418	104157418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NFKB2	NM_002502	exon8	c.A637G	p.I213V	.	.	57	5	78	0	.	522
NLRP3	114548	bcgsc.ca	37	1	247588473	247588473	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NLRP3	NM_183395	exon3	c.T1728C	p.V576V	.	.	146	6	88	0	.	674
NLRP8	126205	bcgsc.ca	37	19	56466825	56466825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NLRP8	NM_176811	exon3	c.G1401T	p.W467C	.	.	74	4	44	0	.	361
NOLC1	9221	bcgsc.ca	37	10	103920709	103920709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOLC1	NM_004741	exon10	c.A1600G	p.K534E	.	.	45	4	65	0	.	91
NOS1	4842	ucsc.edu	37	12	117768702	117768702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOS1	NM_000620	exon2	c.T173C	p.I58T	.	.	40	4	34	0	.	154
NOS2	4843	bcgsc.ca	37	17	26115915	26115915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOS2	NM_000625	exon4	c.T238C	p.S80P	.	.	76	5	80	0	.	156
NOTCH2	4853	ucsc.edu	37	1	120458195	120458195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOTCH2	NM_024408	exon34	c.C7150A	p.P2384T	.	.	33	4	40	0	.	1441
NOTCH2	4853	ucsc.edu;bcgsc.ca	37	1	120512321	120512321	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NOTCH2	NM_001200001	exon6	c.T921C	p.N307N	.	.	63	6	95	0	.	1441
NPAP1	23742	bcgsc.ca	37	15	24923927	24923927	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_018958	exon1	c.T2913C	p.A971A	.	.	63	4	60	0	.	.
NPEPL1	79716	bcgsc.ca	37	20	57266831	57266831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001204872	exon2	c.A11G	p.H4R	.	.	85	6	70	0	.	.
NPLOC4	55666	bcgsc.ca	37	17	79571690	79571690	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NPLOC4	NM_017921	exon8	c.T718C	p.F240L	.	.	150	5	131	0	.	24
NPLOC4	55666	bcgsc.ca	37	17	79589239	79589239	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NPLOC4	NM_017921	exon3	c.A162G	p.G54G	.	.	76	7	64	0	.	24
NR1H3	10062	bcgsc.ca	37	11	47289547	47289547	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NR1H3	NM_001251934	exon8	c.T1090C	p.L364L	.	.	71	4	54	0	.	228
NR3C1	2908	bcgsc.ca	37	5	142779583	142779583	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NR3C1	NM_001018074	exon2	c.C822A	p.P274P	.	.	106	6	98	0	.	92
NRBP1	29959	bcgsc.ca	37	2	27657404	27657404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NRBP1	NM_013392	exon5	c.A502G	p.N168D	.	.	145	6	92	0	.	334
NRDE2	55051	bcgsc.ca	37	14	90770535	90770535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_017970	exon5	c.C749A	p.P250H	.	.	69	5	44	0	.	.
NSD1	64324	bcgsc.ca	37	5	176694572	176694572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NSD1	NM_022455	exon15	c.T5156C	p.L1719P	.	.	108	5	91	0	.	188
NSMCE2	286053	bcgsc.ca	37	8	126114663	126114663	+	Missense_Mutation	SNP	C	C	A	rs76206666		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NSMCE2	NM_173685	exon3	c.C91A	p.Q31K	.	.	261	25	271	3	.	153
NTN4	59277	bcgsc.ca	37	12	96059654	96059654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NTN4	NM_021229	exon9	c.G1682T	p.R561L	.	.	119	5	74	0	.	92
NTN4	59277	bcgsc.ca	37	12	96107077	96107077	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NTN4	NM_021229	exon4	c.A904G	p.S302G	.	.	56	5	50	0	.	92
NTNG1	22854	bcgsc.ca	37	1	107950310	107950310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NTNG1	NM_014917	exon5	c.C1067A	p.P356H	.	.	228	7	191	0	.	140
NUDC	10726	bcgsc.ca	37	1	27272142	27272142	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NUDC	NM_006600	exon8	c.T909C	p.T303T	.	.	61	4	93	1	.	91
NUFIP2	57532	bcgsc.ca	37	17	27613075	27613075	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NUFIP2	NM_020772	exon2	c.G1937A	p.G646D	.	.	156	6	97	0	.	138
NUP153	9972	bcgsc.ca	37	6	17675173	17675173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NUP153	NM_005124	exon5	c.C815A	p.A272D	.	.	112	5	72	0	.	637
NUP210L	91181	bcgsc.ca	37	1	154067583	154067583	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NUP210L	NM_001159484	exon15	c.A2015G	p.E672G	.	.	153	6	70	0	.	77
NXF1	10482	ucsc.edu;bcgsc.ca	37	11	62571039	62571039	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NXF1	NM_006362	exon3	c.C221A	p.P74H	.	.	42	4	37	0	.	228
NXF2	56001	broad.mit.edu	37	X	101623734	101623734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	NXF2	NM_022053	exon8	c.A628G	p.K210E	.	.	980	14	902	2	.	46
OBSCN	84033	ucsc.edu;bcgsc.ca	37	1	228525715	228525715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OBSCN	NM_001271223	exon78	c.G19742T	p.R6581L	.	.	53	5	32	0	.	403
OMD	4958	bcgsc.ca	37	9	95178922	95178922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OMD	NM_005014	exon2	c.C919A	p.L307I	.	.	143	7	94	0	.	206
OMG	4974	bcgsc.ca	37	17	29622743	29622743	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OMG	NM_002544	exon2	c.T607C	p.F203L	.	.	207	6	162	1	.	493
OPCML	4978	bcgsc.ca	37	11	132290181	132290181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OPCML	NM_002545	exon7	c.G944T	p.G315V	.	.	55	4	46	0	.	93
OR10H3	26532	bcgsc.ca	37	19	15852339	15852339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR10H3	NM_013938	exon1	c.T137C	p.I46T	.	.	143	5	186	1	.	68
OR1D4	653166	bcgsc.ca	37	17	3144727	3144727	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR1D4	.	.	.	.	.	.	112	6	209	2	.	22
OR1K1	392392	ucsc.edu	37	9	125562946	125562946	+	Missense_Mutation	SNP	A	A	C	rs201926961	byfrequency	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR1K1	NM_080859	exon1	c.A545C	p.H182P	.	.	91	18	88	16	A|0.983;C|0.017	69
OR1S1	219959	bcgsc.ca	37	11	57983054	57983054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR1S1	NM_001004458	exon1	c.C838A	p.P280T	.	.	114	5	80	0	.	113
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247751732	247751732	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR2G2	NM_001001915	exon1	c.C71T	p.P24L	.	.	372	89	285	0	.	68
OR4D1	26689	bcgsc.ca	37	17	56232785	56232785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR4D1	NM_012374	exon1	c.A271G	p.T91A	.	.	63	4	73	0	.	91
OR4N2	390429	bcgsc.ca	37	14	20296287	20296287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR4N2	NM_001004723	exon1	c.G680T	p.G227V	.	.	217	7	160	0	.	71
OR4P4	81300	bcgsc.ca	37	11	55406394	55406394	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR4P4	NM_001004124	exon1	c.T561C	p.C187C	.	.	119	5	134	1	.	68
OR51G1	79324	bcgsc.ca	37	11	4944741	4944741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR51G1	NM_001005237	exon1	c.T829C	p.F277L	.	.	95	5	94	1	.	70
OR51Q1	390061	bcgsc.ca	37	11	5443775	5443775	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR51Q1	NM_001004757	exon1	c.T345C	p.S115S	.	.	143	5	125	0	.	69
OR52A5	390054	bcgsc.ca	37	11	5153848	5153848	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR52A5	NM_001005160	exon1	c.T25C	p.F9L	.	.	64	5	41	0	.	71
OR5B12	390191	bcgsc.ca	37	11	58207457	58207457	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR5B12	NM_001004733	exon1	c.C168A	p.P56P	.	.	64	5	74	0	.	68
OR5B21	219968	bcgsc.ca	37	11	58275213	58275213	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR5B21	NM_001005218	exon1	c.A366G	p.A122A	.	.	71	4	57	0	.	71
OR5I1	10798	bcgsc.ca	37	11	55703797	55703797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR5I1	NM_006637	exon1	c.T80C	p.I27T	.	.	83	4	81	0	.	69
OR8D1	283159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124180637	124180637	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR8D1	NM_001002917	exon1	c.C26A	p.A9E	.	.	31	7	29	0	.	71
OR9G4	283189	bcgsc.ca	37	11	56511230	56511230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OR9G4	NM_001005284	exon1	c.A58G	p.N20D	.	.	52	4	32	0	.	71
ORC2	4999	bcgsc.ca	37	2	201822233	201822233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ORC2	NM_006190	exon4	c.G129T	p.L43F	.	.	94	6	69	0	.	209
ORC3	23595	bcgsc.ca	37	6	88315680	88315680	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ORC3	NM_181837	exon5	c.A368G	p.E123G	.	.	172	6	171	0	.	206
OSGEPL1	64172	ucsc.edu;bcgsc.ca	37	2	190618641	190618641	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022353	exon6	c.963+1G>T	.	.	.	42	5	36	0	.	.
OSGIN2	734	bcgsc.ca	37	8	90921931	90921931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	OSGIN2	NM_001126111	exon2	c.T181C	p.F61L	.	.	84	5	47	0	.	68
PAFAH2	5051	ucsc.edu;bcgsc.ca	37	1	26317250	26317250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAFAH2	NM_000437	exon2	c.T58C	p.C20R	.	.	32	4	32	0	.	70
PAMR1	25891	bcgsc.ca	37	11	35496185	35496185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAMR1	NM_001001991	exon4	c.C487A	p.Q163K	.	.	65	4	36	0	.	70
PAN2	9924	bcgsc.ca	37	12	56722304	56722304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAN2	NM_014871	exon3	c.A404G	p.N135S	.	.	97	4	72	0	.	702
PAPPA2	60676	bcgsc.ca	37	1	176740108	176740108	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAPPA2	NM_020318	exon17	c.A4507G	p.S1503G	.	.	153	6	101	0	.	548
PAQR6	79957	bcgsc.ca	37	1	156215346	156215346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PAQR6	NM_001272106	exon3	c.C92A	p.P31Q	.	.	203	8	139	0	.	68
PARD3B	117583	bcgsc.ca	37	2	206305106	206305106	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PARD3B	NM_152526	exon19	c.A2568G	p.K856K	.	.	66	4	67	0	.	140
PATE2	399967	bcgsc.ca	37	11	125648631	125648631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PATE2	NM_212555	exon1	c.T38C	p.L13P	.	.	111	5	69	1	.	90
PBRM1	55193	bcgsc.ca	37	3	52623261	52623261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PBRM1	NM_018313	exon19	c.G2790T	p.K930N	.	.	69	4	37	0	.	575
PCCA	5095	bcgsc.ca	37	13	100955220	100955220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCCA	NM_001178004	exon14	c.T1252C	p.S418P	.	.	198	6	105	0	.	227
PCDH12	51294	ucsc.edu;bcgsc.ca	37	5	141335557	141335557	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH12	NM_016580	exon1	c.C1860T	p.T620T	.	.	43	4	36	0	.	93
PCDH17	27253	bcgsc.ca	37	13	58208722	58208722	+	Missense_Mutation	SNP	T	T	C	rs76396998	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH17	NM_001040429	exon1	c.T2042C	p.I681T	.	.	32	4	54	1	T|0.500;G|0.500	97
PCDH8	5100	ucsc.edu;bcgsc.ca	37	13	53422154	53422154	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDH8	NM_032949	exon1	c.A418G	p.I140V	.	.	43	4	58	0	.	153
PCDHA6	56142	bcgsc.ca	37	5	140209612	140209612	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDHA6	NM_018909	exon1	c.C1936A	p.R646R	.	.	62	4	70	0	.	92
PCDHGC5	56097	bcgsc.ca	37	5	140869624	140869624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCDHGC5	NM_018929	exon1	c.A817G	p.T273A	.	.	73	4	69	0	.	25
PCGF2	7703	ucsc.edu	37	17	36891844	36891844	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCGF2	NM_007144	exon11	c.C667A	p.L223I	.	.	48	4	36	0	.	658
PCM1	5108	bcgsc.ca	37	8	17815227	17815227	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCM1	NM_006197	exon13	c.A1983G	p.R661R	.	.	72	4	53	0	.	742
PCM1	5108	bcgsc.ca	37	8	17827208	17827208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCM1	NM_006197	exon22	c.T3535C	p.F1179L	.	.	88	5	109	0	.	742
PCMTD2	55251	bcgsc.ca	37	20	62899254	62899254	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCMTD2	NM_018257	exon5	c.A597G	p.T199T	.	.	133	6	119	0	.	22
PCNXL4	64430	bcgsc.ca	37	14	60591577	60591577	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_022495	exon8	c.T1986C	p.Y662Y	.	.	51	4	54	0	.	.
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101929687	101929687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PCSK6	.	.	.	.	.	.	59	11	41	0	.	46
PDCD11	22984	bcgsc.ca	37	10	105178240	105178240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDCD11	NM_014976	exon15	c.A1955G	p.E652G	.	.	109	5	157	1	.	275
PDCD2L	84306	bcgsc.ca	37	19	34900105	34900105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDCD2L	NM_032346	exon4	c.G376T	p.G126C	.	.	120	6	88	0	.	91
PDE10A	10846	bcgsc.ca	37	6	165792723	165792723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDE10A	NM_001130690	exon18	c.T1945A	p.Y649N	.	.	122	6	128	2	.	519
PDE12	201626	bcgsc.ca	37	3	57542854	57542854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDE12	NM_177966	exon1	c.T748C	p.C250R	.	.	53	4	68	0	.	22
PDE3A	5139	bcgsc.ca	37	12	20803498	20803498	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDE3A	NM_000921	exon14	c.G2889A	p.Q963Q	.	.	89	5	50	0	.	94
PDGFB	5155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	39621841	39621841	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDGFB	NM_002608	exon6	c.C613T	p.Q205X	.	.	81	13	69	0	.	1270
PDP1	54704	bcgsc.ca	37	8	94935526	94935526	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDP1	NM_001161780	exon3	c.G1314T	p.L438L	.	.	240	6	210	0	.	229
PDS5A	23244	ucsc.edu	37	4	39850569	39850569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001100399	exon28	c.G3241A	p.V1081M	.	.	33	4	25	0	.	.
PDYN	5173	ucsc.edu;bcgsc.ca	37	20	1963617	1963617	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PDYN	NM_001190898	exon3	c.A114G	p.K38K	.	.	38	4	30	0	.	92
PEAK1	0	bcgsc.ca	37	15	77425356	77425356	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_024776	exon7	c.T4068C	p.Y1356Y	.	.	148	5	97	0	.	.
PER3	8863	bcgsc.ca	37	1	7880666	7880666	+	Silent	SNP	C	C	T	rs201073002		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PER3	NM_016831	exon15	c.C1899T	p.S633S	.	.	47	4	86	0	C|0.999;T|0.001	93
PFAS	5198	ucsc.edu	37	17	8169587	8169587	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PFAS	NM_012393	exon22	c.G2737T	p.G913X	.	.	46	4	69	0	.	94
PFKP	5214	bcgsc.ca	37	10	3176697	3176697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PFKP	NM_002627	exon20	c.A2045G	p.D682G	.	.	57	4	39	0	.	253
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28268801	28268801	+	Missense_Mutation	SNP	G	G	C	rs143874020		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PGBD1	NM_001184743	exon7	c.G1170C	p.W390C	.	.	60	24	44	0	G|1.000;C|0.000	94
PGM3	5238	bcgsc.ca	37	6	83898333	83898333	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PGM3	NM_001199917	exon4	c.G473T	p.R158M	.	.	67	6	43	0	.	90
PHF17	79960	bcgsc.ca	37	4	129782917	129782917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PHF17	NM_199320	exon9	c.T1040C	p.L347P	.	.	65	4	92	0	.	90
PHF23	79142	bcgsc.ca	37	17	7139361	7139361	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PHF23	NM_024297	exon4	c.T885C	p.P295P	.	.	23	3	37	0	.	90
PHLDB2	90102	bcgsc.ca	37	3	111603764	111603764	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PHLDB2	NM_001134437	exon3	c.T921C	p.N307N	.	.	112	6	93	0	.	96
PHLPP2	23035	bcgsc.ca	37	16	71689312	71689312	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PHLPP2	NM_015020	exon16	c.G2416T	p.D806Y	.	.	50	4	55	0	.	91
PHOX2B	8929	bcgsc.ca	37	4	41747876	41747876	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PHOX2B	NM_003924	exon3	c.T893C	p.L298P	.	.	21	4	31	0	.	1970
PIFO	128344	bcgsc.ca	37	1	111889598	111889598	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_181643	exon2	c.C86A	p.P29Q	.	.	66	5	92	0	.	.
PIK3AP1	118788	bcgsc.ca	37	10	98376419	98376419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PIK3AP1	NM_152309	exon13	c.A1991G	p.K664R	.	.	168	6	231	0	.	519
PIK3R4	30849	bcgsc.ca	37	3	130442275	130442275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PIK3R4	NM_014602	exon7	c.A1964G	p.E655G	.	.	71	5	45	0	.	1471
PIK3R4	30849	bcgsc.ca	37	3	130463938	130463938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PIK3R4	NM_014602	exon2	c.G125T	p.R42L	.	.	68	5	49	0	.	1471
PILRB	29990	bcgsc.ca	37	7	99956323	99956323	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PILRB	NM_178238	exon2	c.A75G	p.T25T	.	.	91	5	94	0	.	90
PIP5K1B	8395	bcgsc.ca	37	9	71532553	71532553	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PIP5K1B	NM_003558	exon9	c.C861A	p.T287T	.	.	124	7	87	0	.	240
PITRM1	10531	ucsc.edu;bcgsc.ca	37	10	3186531	3186531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PITRM1	NM_001242307	exon22	c.G2488T	p.D830Y	.	.	34	4	34	0	.	91
PKHD1L1	93035	broad.mit.edu;bcgsc.ca	37	8	110495217	110495217	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PKHD1L1	NM_177531	exon57	c.G9459A	p.G3153G	.	.	282	13	219	0	.	145
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110468518	110468518	+	Missense_Mutation	SNP	G	G	A	rs190452270		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PKHD1L1	NM_177531	exon46	c.G6902A	p.R2301H	.	.	88	11	66	0	G|0.999;A|0.001	145
PLA2G15	23659	bcgsc.ca	37	16	68283272	68283272	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLA2G15	NM_012320	exon2	c.C207A	p.T69T	.	.	53	4	60	0	.	91
PLB1	151056	bcgsc.ca	37	2	28772921	28772921	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLB1	NM_001170585	exon16	c.C1086A	p.T362T	.	.	84	5	70	0	.	141
PLCB3	5331	ucsc.edu;bcgsc.ca	37	11	64031579	64031579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLCB3	NM_000932	exon22	c.A2647G	p.S883G	.	.	50	5	37	0	.	228
PLCE1	51196	bcgsc.ca	37	10	96066371	96066371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLCE1	NM_016341	exon26	c.G5810A	p.R1937H	.	.	71	4	58	0	.	229
PLD2	5338	ucsc.edu;bcgsc.ca	37	17	4714131	4714131	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLD2	NM_001243108	exon10	c.G895T	p.A299S	.	.	39	4	47	0	.	291
PLEKHH2	130271	bcgsc.ca	37	2	43973041	43973041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLEKHH2	NM_172069	exon24	c.A3592G	p.K1198E	.	.	53	4	27	0	.	92
PLEKHM1P	440456	broad.mit.edu;ucsc.edu	37	17	62820976	62820976	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	30	7	44	0	.	.
PLXNA2	5362	ucsc.edu	37	1	208390086	208390086	+	Silent	SNP	G	G	C	rs1664227	byfrequency	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLXNA2	NM_025179	exon2	c.C1182G	p.T394T	.	.	21	8	14	0	G|0.664;C|0.336	92
PLXNB3	5365	bcgsc.ca	37	X	153033194	153033194	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLXNB3	NM_001163257	exon4	c.C981T	p.A327A	.	.	25	4	22	0	.	130
PLXNC1	10154	ucsc.edu;bcgsc.ca	37	12	94613937	94613937	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PLXNC1	NM_005761	exon6	c.A1700G	p.K567R	.	.	42	4	45	0	.	92
PNPLA2	57104	bcgsc.ca	37	11	823539	823539	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PNPLA2	NM_020376	exon6	c.A709G	p.M237V	.	.	75	4	53	0	.	90
PNPLA3	80339	bcgsc.ca	37	22	44330485	44330485	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PNPLA3	NM_025225	exon5	c.697-1G>T	.	.	.	234	7	161	0	.	90
POC1A	25886	bcgsc.ca	37	3	52159175	52159175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POC1A	NM_015426	exon8	c.T836C	p.F279S	.	.	65	4	67	0	.	90
POLA1	5422	bcgsc.ca	37	X	24757507	24757507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POLA1	NM_016937	exon20	c.G2038T	p.G680C	.	.	128	5	114	0	.	229
POLG2	11232	bcgsc.ca	37	17	62474083	62474083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POLG2	NM_007215	exon8	c.T1315C	p.F439L	.	.	188	6	105	0	.	227
POLR1A	25885	bcgsc.ca	37	2	86310224	86310224	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POLR1A	NM_015425	exon7	c.T798C	p.S266S	.	.	127	5	76	0	.	93
POLR3G	10622	bcgsc.ca	37	5	89781489	89781489	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POLR3G	NM_006467	exon2	c.C105T	p.P35P	.	.	178	6	130	0	.	90
PON3	5446	bcgsc.ca	37	7	94996766	94996766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PON3	NM_000940	exon5	c.C402A	p.P134P	.	.	99	6	32	0	.	91
POP1	10940	bcgsc.ca	37	8	99148882	99148882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	POP1	NM_001145860	exon8	c.C1184A	p.P395Q	.	.	71	5	61	0	.	154
PPAPDC1A	196051	bcgsc.ca	37	10	122280600	122280600	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPAPDC1A	NM_001030059	exon5	c.T438C	p.H146H	.	.	58	4	82	0	.	135
PPAT	5471	broad.mit.edu;bcgsc.ca	37	4	57273817	57273817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPAT	NM_002703	exon2	c.A194G	p.K65R	.	.	71	6	58	0	.	90
PPFIA1	8500	bcgsc.ca	37	11	70171673	70171673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPFIA1	NM_177423	exon5	c.A599G	p.H200R	.	.	128	6	87	0	.	228
PPP1R13L	10848	bcgsc.ca	37	19	45888856	45888856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP1R13L	NM_001142502	exon11	c.C2212A	p.R738S	.	.	65	4	90	0	.	91
PPP1R26	9858	bcgsc.ca	37	9	138379901	138379901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_014811	exon4	c.A3545G	p.E1182G	.	.	58	4	54	0	.	.
PPP1R7	5510	bcgsc.ca	37	2	242097924	242097924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP1R7	NM_002712	exon4	c.T263C	p.I88T	.	.	136	5	105	0	.	660
PPP2R1B	5519	bcgsc.ca	37	11	111618722	111618722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP2R1B	NM_002716	exon11	c.A1355G	p.D452G	.	.	71	5	49	0	.	658
PPP2R3A	5523	ucsc.edu;bcgsc.ca	37	3	135745924	135745924	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP2R3A	NM_002718	exon3	c.T2246C	p.M749T	.	.	30	4	28	0	.	662
PPP6R3	55291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68338555	68338555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PPP6R3	NM_001164162	exon12	c.A1326C	p.E442D	.	.	87	19	61	0	.	91
PQLC1	80148	bcgsc.ca	37	18	77664099	77664099	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PQLC1	NM_025078	exon6	c.C693A	p.S231S	.	.	80	4	103	0	.	154
PRB2	653247	bcgsc.ca	37	12	11546439	11546439	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRB2	NM_006248	exon3	c.C573T	p.P191P	.	.	242	21	263	4	.	22
PRDM14	63978	bcgsc.ca	37	8	70964333	70964333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRDM14	NM_024504	exon8	c.G1695A	p.M565I	.	.	60	6	58	0	.	93
PRDM2	7799	ucsc.edu;bcgsc.ca	37	1	14113012	14113012	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRDM2	NM_015866	exon9	c.A5039G	p.N1680S	.	.	42	4	47	0	.	116
PRIM2	5558	bcgsc.ca	37	6	57398184	57398184	+	RNA	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRIM2	.	.	.	.	.	.	366	13	222	1	.	227
PRKAA1	5562	bcgsc.ca	37	5	40765123	40765123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRKAA1	NM_206907	exon8	c.G1084A	p.E362K	.	.	91	6	90	1	.	792
PRKAG2	51422	bcgsc.ca	37	7	151292516	151292516	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRKAG2	NM_016203	exon6	c.T779C	p.V260A	.	.	61	5	43	0	.	658
PRKDC	5591	bcgsc.ca	37	8	48766776	48766776	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRKDC	NM_001081640	exon52	c.6761-1G>T	.	.	.	88	5	67	0	.	1515
PRKDC	5591	bcgsc.ca	37	8	48855901	48855901	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRKDC	.	.	.	.	.	.	73	4	47	0	.	1515
PRMT7	54496	ucsc.edu;bcgsc.ca	37	16	68373424	68373424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRMT7	NM_019023	exon8	c.C704A	p.P235Q	.	.	19	4	29	0	.	90
PROZ	8858	bcgsc.ca	37	13	113826337	113826337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PROZ	NM_001256134	exon9	c.A1187G	p.Q396R	.	.	58	4	56	0	.	90
PRPF19	27339	bcgsc.ca	37	11	60666045	60666045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRPF19	NM_014502	exon13	c.A1108G	p.M370V	.	.	71	4	66	0	.	91
PRSS55	203074	bcgsc.ca	37	8	10396103	10396103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRSS55	NM_198464	exon5	c.T859C	p.S287P	.	.	67	4	134	1	.	91
PRUNE2	158471	broad.mit.edu;bcgsc.ca	37	9	79325022	79325022	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRUNE2	NM_015225	exon8	c.C2168A	p.P723H	.	.	121	10	115	0	.	157
PRX	57716	bcgsc.ca	37	19	40902751	40902751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PRX	NM_181882	exon7	c.A1508G	p.K503R	.	.	50	4	71	0	.	92
PSG8	440533	ucsc.edu;bcgsc.ca	37	19	43262154	43262154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSG8	NM_001130167	exon3	c.C709A	p.P237T	.	.	37	5	42	0	.	90
PSMD7	5713	bcgsc.ca	37	16	74334997	74334997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSMD7	NM_002811	exon3	c.C214T	p.H72Y	.	.	135	5	126	0	.	522
PSME2	5721	ucsc.edu	37	14	24614667	24614667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSME2	NM_002818	exon4	c.C152T	p.S51F	.	.	21	1	21	0	.	90
PSME2	5721	ucsc.edu;bcgsc.ca	37	14	24615416	24615416	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PSME2	NM_002818	exon3	c.81+1G>T	.	.	.	42	4	54	0	.	90
PTEN	5728	bcgsc.ca	37	10	89711878	89711878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	PTEN,lymph_node,lymphoid_neoplasm,0	PTEN	NM_000314	exon6	c.G496A	p.V166I	.	.	61	4	45	0	.	17735
PTPN22	26191	bcgsc.ca	37	1	114380530	114380530	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPN22	NM_015967	exon13	c.A1492G	p.N498D	.	.	62	4	74	0	.	227
PTPN22	26191	bcgsc.ca	37	1	114380801	114380801	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPN22	NM_015967	exon13	c.G1221A	p.E407E	.	.	93	5	87	0	.	227
PTPRC	5788	bcgsc.ca	37	1	198718636	198718636	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPRC	NM_002838	exon28	c.T3030C	p.D1010D	.	.	124	5	71	0	.	295
PTPRD	5789	bcgsc.ca	37	9	8389299	8389299	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPRD	NM_002839	exon37	c.G4319T	p.W1440L	.	.	90	4	69	0	.	912
PTPRD	5789	bcgsc.ca	37	9	8436662	8436662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPRD	NM_002839	exon35	c.T4016C	p.I1339T	.	.	66	4	47	0	.	912
PTPRN	5798	bcgsc.ca	37	2	220167031	220167031	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PTPRN	NM_002846	exon6	c.A822G	p.Q274Q	.	.	68	5	82	0	.	229
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81004359	81004359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001145026	exon25	c.G4357C	p.E1453Q	.	.	85	16	57	0	.	.
PUM2	23369	bcgsc.ca	37	2	20460229	20460229	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	PUM2	NM_015317	exon15	c.2226-2A>G	.	.	.	63	4	63	0	.	91
QPCTL	54814	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46202122	46202122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	QPCTL	NM_017659	exon5	c.C850T	p.R284C	.	.	33	8	40	0	.	91
R3HCC1L	27291	bcgsc.ca	37	10	99969165	99969165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001256620	exon4	c.A1294G	p.N432D	.	.	51	4	58	0	.	.
RAB11FIP1	80223	bcgsc.ca	37	8	37730465	37730465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RAB11FIP1	NM_001002814	exon4	c.G1855T	p.D619Y	.	.	74	4	56	0	.	92
RAB39A	54734	bcgsc.ca	37	11	107832985	107832985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_017516	exon2	c.A541G	p.K181E	.	.	73	4	54	0	.	.
RAD51	5888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40993273	40993273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RAD51	NM_001164270	exon3	c.A99G	p.I33M	.	.	51	6	62	0	.	563
RANBP2	5903	bcgsc.ca	37	2	109382542	109382542	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RANBP2	NM_006267	exon20	c.T5547C	p.A1849A	.	.	154	5	133	0	.	675
RAPGEF6	51735	bcgsc.ca	37	5	130843776	130843776	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RAPGEF6	NM_001164387	exon9	c.A930G	p.E310E	.	.	257	8	170	1	.	661
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953728	48953728	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RB1	NM_000321	exon14	c.1333-2A>G	.	.	.	143	48	109	0	.	3784
RBAK	57786	ucsc.edu	37	7	5104280	5104280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RBAK	NM_001204456	exon6	c.A1193G	p.E398G	.	.	48	6	24	1	.	653
RBM48	84060	bcgsc.ca	37	7	92166211	92166211	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_032120	exon5	c.T1064A	p.V355E	.	.	213	9	130	2	.	.
RBMXL1	494115	bcgsc.ca	37	1	89448780	89448780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001162536	exon3	c.C730A	p.R244S	.	.	106	6	155	0	.	.
RC3H2	54542	bcgsc.ca	37	9	125613622	125613622	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RC3H2	NM_001100588	exon19	c.G3211A	p.G1071R	.	.	133	5	87	0	.	523
RCSD1	92241	bcgsc.ca	37	1	167666478	167666478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RCSD1	NM_052862	exon6	c.T617C	p.V206A	.	.	137	7	93	1	.	517
RELN	5649	bcgsc.ca	37	7	103389944	103389944	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RELN	NM_173054	exon6	c.A585T	p.I195I	.	.	75	4	45	0	.	574
REPS1	85021	bcgsc.ca	37	6	139234035	139234035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	REPS1	NM_031922	exon16	c.A1835T	p.H612L	.	.	71	4	59	0	.	522
RFC1	5981	bcgsc.ca	37	4	39304719	39304719	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RFC1	NM_001204747	exon16	c.A2166T	p.V722V	.	.	50	4	39	0	.	230
RFX4	5992	bcgsc.ca	37	12	107103159	107103159	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RFX4	NM_001206691	exon9	c.A912G	p.K304K	.	.	73	4	52	0	.	91
RGS11	8786	ucsc.edu;bcgsc.ca	37	16	321559	321559	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RGS11	NM_183337	exon10	c.G667T	p.A223S	.	.	39	4	47	0	.	227
RGSL1	353299	bcgsc.ca	37	1	182443395	182443395	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RGSL1	NM_001137669	exon6	c.T1149C	p.P383P	.	.	91	4	54	0	.	226
RHOBTB2	23221	bcgsc.ca	37	8	22864250	22864250	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RHOBTB2	NM_001160036	exon7	c.A558G	p.K186K	.	.	44	4	81	0	.	416
RHPN1	114822	ucsc.edu;bcgsc.ca	37	8	144459602	144459602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RHPN1	NM_052924	exon4	c.C358A	p.L120M	.	.	45	4	33	0	.	67
RNF181	51255	bcgsc.ca	37	2	85823668	85823668	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RNF181	NM_016494	exon2	c.A113G	p.E38G	.	.	51	4	47	0	.	68
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	104315030	104315030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RNF20	NM_019592	exon13	c.A1896T	p.E632D	.	.	222	56	180	0	.	231
RNF214	257160	bcgsc.ca	37	11	117117568	117117568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RNF214	NM_207343	exon6	c.A863G	p.E288G	.	.	96	5	73	0	.	90
RNR2	6053	broad.mit.edu	37	MT	2407	2407	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	196	167	175	0	.	.
ROBO4	54538	bcgsc.ca	37	11	124761200	124761200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ROBO4	NM_019055	exon12	c.A1943G	p.K648R	.	.	23	3	41	0	.	92
RP1-177G6.2	0	bcgsc.ca	37	X	139795881	139795881	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	116	6	108	0	.	.
RPGRIP1	57096	bcgsc.ca	37	14	21798477	21798477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPGRIP1	NM_020366	exon19	c.C3169A	p.H1057N	.	.	67	6	49	0	.	140
RPGRIP1	57096	bcgsc.ca	37	14	21813317	21813317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPGRIP1	NM_020366	exon22	c.T3578C	p.L1193P	.	.	93	5	80	0	.	140
RPGRIP1L	23322	bcgsc.ca	37	16	53690436	53690436	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPGRIP1L	NM_001127897	exon14	c.A1647G	p.E549E	.	.	112	5	102	0	.	91
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75110602	75110602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPS3	NM_001256802	exon1	c.A11G	p.Q4R	.	.	113	31	110	0	.	90
RPS6KB1	6198	bcgsc.ca	37	17	57987942	57987942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RPS6KB1	NM_001272043	exon2	c.T161C	p.M54T	.	.	117	5	73	0	.	1041
RRP1	8568	bcgsc.ca	37	21	45215077	45215077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RRP1	NM_003683	exon5	c.G368T	p.R123L	.	.	64	6	58	0	.	90
RSAD2	91543	ucsc.edu;bcgsc.ca	37	2	7033836	7033836	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RSAD2	NM_080657	exon5	c.921+2T>C	.	.	.	63	6	39	0	.	90
RXFP1	59350	bcgsc.ca	37	4	159520560	159520560	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	RXFP1	NM_001253727	exon4	c.G450T	p.S150S	.	.	85	5	66	0	.	91
SAMD9	54809	bcgsc.ca	37	7	92732654	92732654	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SAMD9	NM_001193307	exon2	c.T2757C	p.S919S	.	.	153	8	121	0	.	140
SBNO2	22904	bcgsc.ca	37	19	1111542	1111542	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_014963	exon24	c.C2772A	p.P924P	.	.	75	6	97	0	.	.
SCAMP1	9522	broad.mit.edu	37	5	77717695	77717695	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	952	13	735	2	.	.
SCARA3	51435	ucsc.edu;bcgsc.ca	37	8	27516828	27516828	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCARA3	NM_182826	exon5	c.G1141C	p.V381L	.	.	31	4	54	0	.	228
SCD	6319	ucsc.edu	37	10	102114382	102114382	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCD	NM_005063	exon4	c.C640T	p.Q214X	.	.	46	4	73	0	.	90
SCGN	10590	bcgsc.ca	37	6	25661785	25661785	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCGN	NM_006998	exon3	c.G159T	p.T53T	.	.	91	5	60	0	.	93
SCN3B	55800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123513234	123513234	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCN3B	NM_018400	exon3	c.T365A	p.V122E	.	.	71	18	54	0	.	156
SCRIB	23513	ucsc.edu	37	8	144896172	144896172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SCRIB	NM_015356	exon2	c.C276A	p.N92K	.	.	49	4	40	0	.	228
SDF2L1	23753	bcgsc.ca	37	22	21998374	21998374	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SDF2L1	NM_022044	exon3	c.C576A	p.P192P	.	.	63	6	68	0	.	90
SDHA	6389	bcgsc.ca	37	5	228411	228411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SDHA	NM_004168	exon6	c.C733A	p.H245N	.	.	97	5	83	0	.	226
SEC16A	9919	bcgsc.ca	37	9	139358002	139358002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_014866	exon11	c.G4560A	p.M1520I	.	.	95	4	79	0	.	.
SEC23A	10484	ucsc.edu;bcgsc.ca	37	14	39555106	39555106	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEC23A	NM_006364	exon7	c.T688C	p.L230L	.	.	38	4	35	0	.	95
SEC31A	22872	bcgsc.ca	37	4	83788366	83788366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEC31A	NM_001077206	exon9	c.G986A	p.S329N	.	.	69	5	86	0	.	268
SELL	6402	broad.mit.edu;bcgsc.ca	37	1	169672458	169672458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SELL	NM_000655	exon6	c.G929T	p.G310V	.	.	225	14	105	0	.	90
SEMA4D	10507	bcgsc.ca	37	9	91994328	91994328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEMA4D	NM_006378	exon18	c.A1880G	p.E627G	.	.	29	4	32	0	.	92
SEMA6B	10501	bcgsc.ca	37	19	4552575	4552575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEMA6B	NM_032108	exon10	c.C848T	p.T283M	.	.	75	4	91	0	.	91
SENP6	26054	bcgsc.ca	37	6	76419290	76419290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SENP6	NM_015571	exon20	c.G2764T	p.A922S	.	.	73	4	48	0	.	660
SEPT10	151011	bcgsc.ca	37	2	110321954	110321954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEPT10	NM_144710	exon8	c.C1017A	p.N339K	.	.	98	9	77	1	.	68
SEPT11	55752	bcgsc.ca	37	4	77871072	77871072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEPT11	NM_018243	exon1	c.G16T	p.G6W	.	.	22	4	46	0	.	68
SERPINF1	5176	ucsc.edu;bcgsc.ca	37	17	1675351	1675351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SERPINF1	NM_002615	exon5	c.G625T	p.G209C	.	.	33	4	25	0	.	227
SEZ6L2	26470	bcgsc.ca	37	16	29899099	29899099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SEZ6L2	NM_001243332	exon7	c.G1079T	p.R360L	.	.	35	5	39	0	.	92
SFRP4	6424	broad.mit.edu;bcgsc.ca	37	7	37955917	37955917	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SFRP4	NM_003014	exon1	c.T223C	p.F75L	.	.	76	6	82	0	.	658
SFXN1	94081	bcgsc.ca	37	5	174953715	174953715	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SFXN1	NM_022754	exon11	c.T947C	p.V316A	.	.	93	5	81	0	.	91
SHC4	399694	bcgsc.ca	37	15	49118214	49118214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SHC4	NM_203349	exon12	c.C1847A	p.P616Q	.	.	170	6	124	0	.	95
SHISA5	51246	bcgsc.ca	37	3	48511228	48511228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SHISA5	NM_016479	exon4	c.T329C	p.L110S	.	.	130	6	101	0	.	68
SHROOM3	57619	bcgsc.ca	37	4	77660887	77660887	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SHROOM3	NM_020859	exon5	c.A1561G	p.N521D	.	.	23	3	47	0	.	93
SIGLEC1	6614	bcgsc.ca	37	20	3677869	3677869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SIGLEC1	NM_023068	exon9	c.G2243T	p.G748V	.	.	73	4	76	0	.	167
SIGLEC8	27181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51957481	51957481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SIGLEC8	NM_014442	exon6	c.G1237T	p.A413S	.	.	40	16	45	0	.	94
SKA3	221150	hgsc.bcm.edu	37	13	21742126	21742126	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SKA3	NM_001166017	exon5	c.743+1G>T	.	.	.	91	8	65	0	.	90
SKIV2L2	23517	bcgsc.ca	37	5	54637594	54637594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SKIV2L2	NM_015360	exon7	c.A776G	p.D259G	.	.	140	6	64	0	.	92
SLC18A1	6570	ucsc.edu;bcgsc.ca	37	8	20036702	20036702	+	Missense_Mutation	SNP	C	C	A	rs17215808	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC18A1	NM_001142324	exon4	c.G418T	p.G140W	.	.	36	4	65	0	C|0.998;T|0.002	92
SLC22A6	9356	ucsc.edu	37	11	62747031	62747031	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC22A6	NM_153276	exon8	c.G1290T	p.G430G	.	.	44	5	45	0	.	90
SLC28A2	9153	bcgsc.ca	37	15	45564869	45564869	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC28A2	NM_004212	exon17	c.1748-2A>T	.	.	.	50	4	51	0	.	94
SLC35E3	55508	bcgsc.ca	37	12	69153013	69153013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC35E3	NM_018656	exon4	c.C749A	p.P250H	.	.	208	6	120	0	.	514
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58706093	58706093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC38A7	NM_018231	exon9	c.C938A	p.S313Y	.	.	52	26	80	0	.	69
SLC39A5	283375	ucsc.edu	37	12	56629409	56629409	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC39A5	NM_173596	exon8	c.A870G	p.S290S	.	.	83	1	73	0	.	92
SLC41A2	84102	bcgsc.ca	37	12	105199028	105199028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC41A2	NM_032148	exon10	c.C1624A	p.L542I	.	.	85	4	63	0	.	92
SLC41A3	54946	broad.mit.edu;bcgsc.ca	37	3	125786988	125786988	+	Silent	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC41A3	NM_001008486	exon2	c.C75G	p.P25P	.	.	49	5	30	0	.	90
SLC4A1AP	22950	bcgsc.ca	37	2	27916618	27916618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC4A1AP	NM_018158	exon13	c.G2338A	p.E780K	.	.	147	5	97	0	.	90
SLC6A16	28968	bcgsc.ca	37	19	49813656	49813656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC6A16	NM_014037	exon3	c.A527G	p.K176R	.	.	56	4	65	0	.	94
SLC7A6	9057	bcgsc.ca	37	16	68321709	68321709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLC7A6	NM_003983	exon4	c.T584C	p.F195S	.	.	67	4	89	0	.	90
SLC9A7P1	121456	bcgsc.ca	37	12	98849850	98849850	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	141	5	93	0	.	.
SLCO5A1	81796	bcgsc.ca	37	8	70594501	70594501	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLCO5A1	NM_030958	exon7	c.A1700G	p.E567G	.	.	130	7	102	0	.	94
SLFN14	342618	bcgsc.ca	37	17	33880048	33880048	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SLFN14	NM_001129820	exon3	c.T1605C	p.L535L	.	.	43	4	43	0	.	1
SMARCA1	6594	bcgsc.ca	37	X	128632049	128632049	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SMARCA1	NM_003069	exon12	c.1278-1G>T	.	.	.	241	6	133	0	.	230
SMARCAD1	56916	bcgsc.ca	37	4	95185954	95185954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SMARCAD1	NM_001128429	exon10	c.A1378G	p.N460D	.	.	122	5	166	0	.	229
SMC1B	27127	bcgsc.ca	37	22	45802342	45802342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SMC1B	NM_148674	exon4	c.A614G	p.E205G	.	.	276	8	143	0	.	229
SMC3	9126	bcgsc.ca	37	10	112338452	112338452	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SMC3	NM_005445	exon7	c.T417A	p.V139V	.	.	71	5	49	0	.	92
SMC4	10051	broad.mit.edu	37	3	160150817	160150817	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SMC4	NM_005496	exon22	c.T3534C	p.V1178V	.	.	86	5	57	1	.	291
SNCAIP	9627	bcgsc.ca	37	5	121786501	121786501	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNCAIP	NM_005460	exon10	c.A1959G	p.K653K	.	.	67	4	68	0	.	92
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121767681	121767681	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNCAIP	NM_005460	exon6	c.C1200T	p.C400C	.	.	151	37	108	0	.	92
SNRPB	6628	ucsc.edu;bcgsc.ca	37	20	2443362	2443362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNRPB	NM_003091	exon6	c.C605A	p.P202Q	.	.	41	4	40	0	.	227
SNTG1	54212	broad.mit.edu	37	8	51503450	51503450	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNTG1	NM_018967	exon13	c.C822A	p.I274I	.	.	684	11	404	1	.	95
SNX19	399979	bcgsc.ca	37	11	130784327	130784327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SNX19	NM_014758	exon1	c.T1508C	p.L503P	.	.	67	5	65	1	.	229
SOS1	6654	bcgsc.ca	37	2	39234263	39234263	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SOS1	NM_005633	exon16	c.T2582C	p.V861A	.	.	110	7	78	1	.	851
SOX10	6663	ucsc.edu	37	22	38370122	38370122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SOX10	NM_006941	exon4	c.C781A	p.R261S	.	.	40	4	27	0	.	650
SPAG17	200162	bcgsc.ca	37	1	118554988	118554988	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPAG17	NM_206996	exon30	c.C4295A	p.T1432K	.	.	69	4	58	0	.	158
SPATA16	83893	bcgsc.ca	37	3	172643146	172643146	+	Silent	SNP	C	C	A	rs200413261	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPATA16	NM_031955	exon7	c.G1218T	p.P406P	.	.	148	5	93	0	C|1.000;T|0.000	94
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48629417	48629417	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPATA20	NM_022827	exon14	c.G1833A	p.A611A	.	.	121	20	108	0	.	90
SPATA6	54558	bcgsc.ca	37	1	48878784	48878784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPATA6	NM_019073	exon4	c.C278A	p.P93Q	.	.	118	5	78	0	.	91
SPEF2	79925	bcgsc.ca	37	5	35646909	35646909	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPEF2	NM_024867	exon5	c.A726G	p.E242E	.	.	169	5	92	0	.	26
SPO11	23626	bcgsc.ca	37	20	55910923	55910923	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPO11	NM_012444	exon8	c.A704G	p.D235G	.	.	190	6	148	1	.	221
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	72	19	45	0	A|0.000;C|0.697;T|0.303	45
SPTBN1	6711	bcgsc.ca	37	2	54855273	54855273	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPTBN1	NM_003128	exon13	c.G1684T	p.G562C	.	.	94	5	93	0	.	140
SPTBN5	51332	bcgsc.ca	37	15	42167727	42167727	+	Missense_Mutation	SNP	G	G	T	rs200217235	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SPTBN5	NM_016642	exon22	c.C4111A	p.R1371S	.	.	61	4	51	0	.	91
SRCAP	10847	ucsc.edu;bcgsc.ca	37	16	30750595	30750595	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SRCAP	NM_006662	exon34	c.A9234G	p.G3078G	.	.	45	5	52	1	.	94
SREK1	140890	ucsc.edu;bcgsc.ca	37	5	65440291	65440291	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SREK1	NM_001270493	exon1	c.G87T	p.A29A	.	.	32	5	31	0	.	91
SSPO	23145	bcgsc.ca	37	7	149500793	149500793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_198455	exon55	c.A8111G	p.E2704G	.	.	85	5	82	1	.	.
SSTR2	6752	ucsc.edu	37	17	71166144	71166144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SSTR2	NM_001050	exon2	c.T686C	p.L229P	.	.	38	4	21	0	.	522
STARD13	90627	bcgsc.ca	37	13	33703321	33703321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STARD13	NM_178006	exon5	c.A1493G	p.E498G	.	.	83	4	64	0	.	94
STEAP2	261729	broad.mit.edu	37	7	89856377	89856377	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STEAP2	NM_001244946	exon4	c.A585G	p.L195L	.	.	192	5	154	0	.	92
STIM1	6786	bcgsc.ca	37	11	4045170	4045170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STIM1	NM_003156	exon3	c.A338G	p.K113R	.	.	51	4	29	0	.	91
STK32A	202374	bcgsc.ca	37	5	146658861	146658861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STK32A	NM_145001	exon4	c.A160G	p.M54V	.	.	69	4	39	0	.	521
STK35	140901	ucsc.edu	37	20	2083975	2083975	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STK35	NM_080836	exon2	c.C856A	p.Q286K	.	.	51	4	44	0	.	334
STRN	6801	bcgsc.ca	37	2	37078222	37078222	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	STRN	NM_003162	exon16	c.A2007G	p.R669R	.	.	165	6	124	1	.	91
SUGP2	10147	bcgsc.ca	37	19	19129947	19129947	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SUGP2	NM_014884	exon4	c.A1821G	p.R607R	.	.	59	5	39	0	.	91
SUGP2	10147	bcgsc.ca	37	19	19135479	19135479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SUGP2	NM_014884	exon3	c.C1678A	p.P560T	.	.	57	5	48	0	.	91
SUGT1P1	441394	bcgsc.ca	37	9	33503776	33503776	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	70	5	36	0	.	.
SYCE1L	100130958	ucsc.edu;bcgsc.ca	37	16	77242387	77242387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001129979	exon4	c.G207T	p.L69L	.	.	47	4	56	0	.	.
SYCP1	6847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115401205	115401205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SYCP1	NM_003176	exon6	c.A329G	p.Y110C	.	.	204	88	204	0	.	91
SYNE4	163183	bcgsc.ca	37	19	36499149	36499149	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001039876	exon2	c.C249T	p.Y83Y	.	.	24	4	26	0	.	.
SYNPO	11346	bcgsc.ca	37	5	150027973	150027973	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SYNPO	NM_001166209	exon3	c.C868A	p.Q290K	.	.	73	4	72	0	.	153
SYTL2	54843	bcgsc.ca	37	11	85436109	85436109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	SYTL2	NM_206927	exon1	c.A1391G	p.K464R	.	.	88	5	65	0	.	137
TAAR6	319100	bcgsc.ca	37	6	132892471	132892471	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TAAR6	NM_175067	exon1	c.C1011T	p.T337T	.	.	83	4	78	0	.	93
TAB3	257397	bcgsc.ca	37	X	30849591	30849591	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TAB3	NM_152787	exon11	c.C2092A	p.P698T	.	.	250	9	246	0	.	131
TACC1	6867	ucsc.edu	37	8	38677806	38677806	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TACC1	NM_006283	exon3	c.A1044G	p.T348T	.	.	42	4	45	0	.	187
TACR1	6869	bcgsc.ca	37	2	75280844	75280844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TACR1	NM_001058	exon3	c.C623T	p.P208L	.	.	61	4	58	0	.	523
TANC1	85461	bcgsc.ca	37	2	160086186	160086186	+	Missense_Mutation	SNP	T	T	C	rs76459206	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TANC1	NM_033394	exon27	c.T4249C	p.C1417R	.	.	59	5	54	2	.	92
TAX1BP1	8887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27831697	27831697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TAX1BP1	NM_006024	exon9	c.G1111A	p.V371I	.	.	130	10	88	0	.	153
TBC1D10A	83874	bcgsc.ca	37	22	30689654	30689654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBC1D10A	NM_001204240	exon8	c.T1057C	p.F353L	.	.	59	4	63	0	.	91
TBC1D23	55773	bcgsc.ca	37	3	100016785	100016785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBC1D23	NM_001199198	exon9	c.G895T	p.G299C	.	.	129	7	118	0	.	92
TBC1D3P1-DHX40P1	653645	broad.mit.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	243	12	171	1	.	.
TBC1D3P1-DHX40P1	653645	bcgsc.ca	37	17	58066644	58066644	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	.	.	.	.	.	.	225	7	157	0	.	.
TBC1D5	9779	ucsc.edu	37	3	17333433	17333433	+	Missense_Mutation	SNP	T	T	C	rs139338298	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBC1D5	NM_014744	exon15	c.A1199G	p.D400G	.	.	40	4	39	0	T|0.999;A|0.000	91
TBC1D9	23158	bcgsc.ca	37	4	141560532	141560532	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBC1D9	NM_015130	exon14	c.G2388A	p.Q796Q	.	.	66	4	82	0	.	23
TBCD	6904	bcgsc.ca	37	17	80897247	80897247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBCD	NM_005993	exon37	c.G3374T	p.R1125L	.	.	26	3	30	0	.	22
TBK1	29110	bcgsc.ca	37	12	64879765	64879765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TBK1	NM_013254	exon11	c.G1308T	p.Q436H	.	.	87	4	69	0	.	1459
TCEB3	6924	bcgsc.ca	37	1	24076379	24076379	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TCEB3	NM_003198	exon3	c.T258C	p.H86H	.	.	78	4	109	0	.	91
TCERG1	10915	bcgsc.ca	37	5	145834753	145834753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TCERG1	NM_006706	exon2	c.C194T	p.P65L	.	.	69	5	54	0	.	92
TDP1	55775	bcgsc.ca	37	14	90429693	90429693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TDP1	NM_018319	exon3	c.A235G	p.S79G	.	.	49	4	56	0	.	92
TDRD3	81550	bcgsc.ca	37	13	61057922	61057922	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TDRD3	NM_001146070	exon6	c.A509T	p.H170L	.	.	88	5	125	0	.	516
TEX12	56158	bcgsc.ca	37	11	112041380	112041380	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TEX12	NM_031275	exon4	c.C210A	p.T70T	.	.	130	5	68	0	.	90
TFAP2E	339488	bcgsc.ca	37	1	36060155	36060155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TFAP2E	NM_178548	exon7	c.A1207T	p.T403S	.	.	64	4	81	0	.	90
TFCP2	7024	bcgsc.ca	37	12	51493494	51493494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TFCP2	NM_001173452	exon12	c.A1220G	p.Q407R	.	.	157	5	127	1	.	91
TFEC	22797	bcgsc.ca	37	7	115580717	115580717	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TFEC	NM_012252	exon8	c.A932G	p.D311G	.	.	182	7	99	0	.	153
TG	7038	bcgsc.ca	37	8	133923689	133923689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TG	NM_003235	exon19	c.T4070C	p.L1357P	.	.	154	6	194	0	.	145
TGS1	96764	bcgsc.ca	37	8	56702781	56702781	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TGS1	NM_024831	exon5	c.A1203G	p.R401R	.	.	59	4	40	0	.	227
THADA	63892	bcgsc.ca	37	2	43798968	43798968	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THADA	NM_001083953	exon13	c.A1942G	p.S648G	.	.	66	4	50	0	.	228
THBS1	7057	ucsc.edu;bcgsc.ca	37	15	39876571	39876571	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THBS1	NM_003246	exon6	c.A974T	p.Y325F	.	.	42	4	57	0	.	653
THNSL2	55258	bcgsc.ca	37	2	88474835	88474835	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THNSL2	NM_018271	exon3	c.C486A	p.I162I	.	.	132	6	89	0	.	91
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	11485864	11485864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THSD7A	NM_015204	exon13	c.C2888A	p.A963E	.	.	142	54	110	0	.	71
THSD7A	221981	ucsc.edu	37	7	11500302	11500302	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	THSD7A	NM_015204	exon11	c.G2592T	p.G864G	.	.	24	4	11	0	.	71
TIGD4	201798	bcgsc.ca	37	4	153691229	153691229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TIGD4	NM_145720	exon2	c.T928C	p.C310R	.	.	92	5	101	1	.	91
TINAG	27283	bcgsc.ca	37	6	54185408	54185408	+	Missense_Mutation	SNP	G	G	T	rs151025936	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TINAG	NM_014464	exon2	c.G387T	p.E129D	.	.	86	5	62	0	G|1.000;A|0.000	93
TJP1	7082	bcgsc.ca	37	15	30018669	30018669	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TJP1	NM_175610	exon18	c.A2326G	p.N776D	.	.	128	6	84	0	.	95
TLE2	7089	bcgsc.ca	37	19	3005768	3005768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001144761	exon17	c.A1741G	p.S581G	.	.	68	5	106	0	.	.
TLN1	7094	bcgsc.ca	37	9	35717188	35717188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLN1	NM_006289	exon19	c.A2413G	p.I805V	.	.	56	4	46	0	.	609
TLN2	83660	bcgsc.ca	37	15	63097878	63097878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLN2	NM_015059	exon48	c.C6557T	p.A2186V	.	.	68	5	39	0	.	573
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937428	12937428	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLR8	NM_138636	exon2	c.C269G	p.T90S	.	.	144	49	112	0	.	629
TLR9	54106	bcgsc.ca	37	3	52257954	52257954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TLR9	NM_017442	exon2	c.A378G	p.E126E	.	.	112	5	125	1	.	587
TM9SF3	56889	ucsc.edu	37	10	98307700	98307700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TM9SF3	NM_020123	exon8	c.T1006C	p.S336P	.	.	34	4	22	0	.	90
TMED7-TICAM2	100302736	bcgsc.ca	37	5	114956363	114956363	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001164468	exon2	c.T207C	p.G69G	.	.	90	4	71	0	.	.
TMEM106A	113277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41368750	41368750	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_145041	exon7	c.A605C	p.E202A	.	.	151	19	104	0	.	.
TMEM260	0	ucsc.edu	37	14	57099842	57099842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_017799	exon13	c.G1677T	p.W559C	.	.	43	4	25	0	.	.
TMEM52	339456	bcgsc.ca	37	1	1849471	1849471	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM52	NM_178545	exon5	c.T480C	p.A160A	.	.	126	5	208	0	.	68
TMEM54	113452	bcgsc.ca	37	1	33361333	33361333	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM54	NM_033504	exon4	c.G282T	p.V94V	.	.	10	3	19	0	.	227
TMEM55B	90809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20926842	20926842	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM55B	NM_001100814	exon7	c.C731T	p.A244V	.	.	43	16	44	0	.	90
TMEM63B	55362	ucsc.edu	37	6	44108792	44108792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMEM63B	NM_018426	exon10	c.A739G	p.I247V	.	.	33	4	44	0	.	92
TMPRSS11F	389208	bcgsc.ca	37	4	68938091	68938091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMPRSS11F	NM_207407	exon5	c.A464G	p.K155R	.	.	60	4	38	0	.	91
TMPRSS15	5651	bcgsc.ca	37	21	19698753	19698753	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TMPRSS15	NM_002772	exon16	c.T1917C	p.I639I	.	.	77	4	56	0	.	160
TNFRSF6B	8771	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62329759	62329759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNFRSF6B	NM_003823	exon3	c.G746A	p.G249D	.	.	32	12	41	2	.	651
TNKS1BP1	85456	bcgsc.ca	37	11	57076534	57076534	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNKS1BP1	NM_033396	exon6	c.G3651T	p.P1217P	.	.	52	4	63	0	.	91
TNKS2	80351	bcgsc.ca	37	10	93608306	93608306	+	Missense_Mutation	SNP	A	A	G	rs145821862		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNKS2	NM_025235	exon19	c.A2525G	p.D842G	.	.	122	7	87	0	A|0.999;G|0.000	541
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93609319	93609319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNKS2	NM_025235	exon20	c.G2662A	p.E888K	.	.	147	47	122	0	.	541
TNXB	7148	bcgsc.ca	37	6	32010294	32010294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TNXB	NM_019105	exon40	c.G12142T	p.G4048C	.	.	140	6	139	0	.	90
TPPP3	51673	bcgsc.ca	37	16	67424864	67424864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TPPP3	NM_016140	exon3	c.A151G	p.T51A	.	.	42	4	57	0	.	90
TRA2A	29896	bcgsc.ca	37	7	23556052	23556052	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRA2A	NM_013293	exon3	c.C266A	p.P89Q	.	.	168	6	132	0	.	91
TRIM38	10475	bcgsc.ca	37	6	25973470	25973470	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRIM38	NM_006355	exon7	c.C831T	p.S277S	.	.	84	4	53	0	.	226
TRIM41	90933	bcgsc.ca	37	5	180651812	180651812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRIM41	NM_201627	exon1	c.G813T	p.K271N	.	.	67	4	53	0	.	226
TRIM59	286827	bcgsc.ca	37	3	160156203	160156203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRIM59	NM_173084	exon3	c.G769A	p.V257I	.	.	75	4	91	0	.	658
TRIM68	55128	bcgsc.ca	37	11	4621951	4621951	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRIM68	NM_018073	exon7	c.C1013A	p.P338H	.	.	198	7	207	0	.	91
TRPC4AP	26133	bcgsc.ca	37	20	33632468	33632468	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPC4AP	NM_199368	exon7	c.C705T	p.S235S	.	.	86	4	65	0	.	91
TRPC5	7224	bcgsc.ca	37	X	111078254	111078254	+	Silent	SNP	G	G	T	rs80221920	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPC5	NM_012471	exon7	c.C1791A	p.T597T	.	.	115	8	86	0	G|0.995;A|0.005	130
TRPM7	54822	ucsc.edu;bcgsc.ca	37	15	50978728	50978728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPM7	NM_017672	exon1	c.G3T	p.M1I	.	.	47	4	53	0	.	392
TRPV2	51393	ucsc.edu	37	17	16325966	16325966	+	Nonsense_Mutation	SNP	G	G	T	rs200299298	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPV2	NM_016113	exon4	c.G388T	p.G130X	.	.	22	4	43	1	G|0.999;A|0.001	91
TRPV2	51393	ucsc.edu;bcgsc.ca	37	17	16335314	16335314	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TRPV2	NM_016113	exon12	c.C1689A	p.P563P	.	.	36	4	64	0	.	91
TSHR	7253	ucsc.edu;bcgsc.ca	37	14	81609800	81609800	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TSHR	NM_000369	exon10	c.C1398T	p.Y466Y	.	.	39	4	50	0	.	1650
TTC39C	125488	bcgsc.ca	37	18	21649225	21649225	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTC39C	NM_001135993	exon4	c.A450G	p.Q150Q	.	.	69	6	84	0	.	91
TTC3P1	286495	bcgsc.ca	37	X	74961520	74961520	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTC3P1	.	.	.	.	.	.	173	7	139	1	.	63
TTN	7273	bcgsc.ca	37	2	179406084	179406084	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon350	c.G97720A	p.V32574I	.	.	131	5	112	0	.	636
TTN	7273	bcgsc.ca	37	2	179427000	179427000	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon326	c.A83859G	p.P27953P	.	.	67	4	59	0	.	636
TTN	7273	bcgsc.ca	37	2	179477082	179477082	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon266	c.C50170A	p.R16724R	.	.	136	6	147	0	.	636
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179419651	179419651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTN	NM_001267550	exon331	c.A88535G	p.E29512G	.	.	85	5	64	0	.	636
TTYH2	94015	bcgsc.ca	37	17	72246125	72246125	+	Silent	SNP	G	G	T	rs150861871	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TTYH2	NM_032646	exon9	c.G981T	p.A327A	.	.	121	7	116	0	G|0.999;A|0.001	138
TUBE1	51175	bcgsc.ca	37	6	112402301	112402301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TUBE1	NM_016262	exon5	c.A320G	p.N107S	.	.	69	4	37	0	.	91
TYK2	7297	ucsc.edu;bcgsc.ca	37	19	10476467	10476467	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	TYK2	NM_003331	exon7	c.A737G	p.Q246R	.	.	51	4	55	1	.	1009
UBE2J1	51465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90047985	90047985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2J1	NM_016021	exon5	c.G367A	p.G123R	.	.	202	11	113	0	.	226
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93804590	93804590	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBE2N	NM_003348	exon3	c.G338C	p.S113T	.	.	201	24	147	0	.	659
UBN2	254048	bcgsc.ca	37	7	138968435	138968435	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBN2	NM_173569	exon15	c.G2784T	p.K928N	.	.	47	4	41	0	.	70
UBR4	23352	bcgsc.ca	37	1	19482843	19482843	+	Silent	SNP	C	C	A	rs146543333	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBR4	NM_020765	exon42	c.G5994T	p.T1998T	.	.	83	5	72	0	C|0.999;T|0.000	612
UBR4	23352	bcgsc.ca	37	1	19514020	19514020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UBR4	NM_020765	exon12	c.G1409T	p.G470V	.	.	88	6	63	0	.	612
ULK4	54986	bcgsc.ca	37	3	41759324	41759324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ULK4	NM_017886	exon23	c.G2351A	p.R784K	.	.	94	5	63	0	.	297
UNC13B	10497	hgsc.bcm.edu	37	9	35403876	35403926	+	In_Frame_Del	DEL	GCTGTGCCTGCTGGTGCCCCTTGGGCCGGAAGATCCATATGGATGAGACAG	GCTGTGCCTGCTGGTGCCCCTTGGGCCGGAAGATCCATATGGATGAGACAG	-	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	GCTGTGCCTGCTGGTGCCCCTTGGGCCGGAAGATCCATATGGATGAGACAG	GCTGTGCCTGCTGGTGCCCCTTGGGCCGGAAGATCCATATGGATGAGACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UNC13B	NM_006377	exon39	c.4622_4672del	p.1541_1558del	.	.	53	0	76	0	.	157
UNC80	285175	bcgsc.ca	37	2	210690730	210690730	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UNC80	NM_182587	exon14	c.C2431A	p.R811R	.	.	86	4	59	0	.	90
UNC80	285175	bcgsc.ca	37	2	210800471	210800471	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UNC80	NM_032504	exon39	c.A6014G	p.E2005G	.	.	171	6	116	0	.	90
UQCRC2	7385	bcgsc.ca	37	16	21973828	21973828	+	Missense_Mutation	SNP	G	G	T	rs143434256	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UQCRC2	NM_003366	exon5	c.G380T	p.R127L	.	.	93	5	106	0	G|1.000;A|0.000	153
URB1	9875	bcgsc.ca	37	21	33740797	33740797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_014825	exon9	c.T1112C	p.L371P	.	.	82	5	78	0	.	.
USH2A	7399	bcgsc.ca	37	1	216251496	216251496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USH2A	NM_206933	exon27	c.C5507A	p.P1836Q	.	.	94	5	54	0	.	115
USO1	8615	ucsc.edu;bcgsc.ca	37	4	76703966	76703966	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USO1	.	.	.	.	.	.	43	4	32	0	.	25
USP25	29761	bcgsc.ca	37	21	17214859	17214859	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP25	NM_013396	exon18	c.G2337T	p.S779S	.	.	106	7	72	0	.	663
USP26	83844	bcgsc.ca	37	X	132160123	132160123	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP26	NM_031907	exon1	c.C2126A	p.A709D	.	.	128	6	91	0	.	661
USP31	57478	bcgsc.ca	37	16	23098480	23098480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP31	NM_020718	exon9	c.A1555G	p.S519G	.	.	128	5	165	0	.	663
USP34	9736	bcgsc.ca	37	2	61577766	61577766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP34	NM_014709	exon11	c.C1314A	p.P438P	.	.	195	9	132	0	.	579
USP4	7375	bcgsc.ca	37	3	49338023	49338023	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP4	NM_003363	exon11	c.A1389G	p.E463E	.	.	154	6	163	0	.	660
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49365180	49365180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP4	NM_199443	exon3	c.C299G	p.A100G	.	.	167	19	135	0	.	660
USP47	55031	bcgsc.ca	37	11	11906127	11906127	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP47	NM_017944	exon2	c.G153T	p.L51L	.	.	124	6	72	0	.	660
USP53	54532	bcgsc.ca	37	4	120192569	120192569	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP53	NM_019050	exon15	c.T1554C	p.H518H	.	.	100	5	133	0	.	660
USP54	159195	bcgsc.ca	37	10	75276705	75276705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP54	NM_152586	exon18	c.G3479T	p.R1160M	.	.	134	6	101	0	.	721
USP8	9101	ucsc.edu;bcgsc.ca	37	15	50785055	50785055	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	USP8	NM_001128610	exon15	c.G2392C	p.A798P	.	.	107	10	84	3	.	658
UTP14A	10813	bcgsc.ca	37	X	129063486	129063486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UTP14A	NM_006649	exon15	c.C2218T	p.R740W	.	.	162	6	111	1	.	132
UTP15	84135	bcgsc.ca	37	5	72875759	72875759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	UTP15	NM_032175	exon13	c.T1397C	p.L466P	.	.	86	4	50	0	.	90
VARS2	57176	bcgsc.ca	37	6	30890693	30890693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VARS2	NM_001167734	exon23	c.G2215T	p.G739W	.	.	113	5	80	0	.	26
VAX1	11023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118896079	118896079	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VAX1	NM_199131	exon2	c.G333C	p.Q111H	.	.	46	31	48	0	.	92
VBP1	7411	bcgsc.ca	37	X	154467103	154467103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VBP1	NM_003372	exon6	c.T574C	p.S192P	.	.	214	9	149	1	.	226
VCP	7415	bcgsc.ca	37	9	35062053	35062053	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VCP	NM_007126	exon9	c.T1028C	p.V343A	.	.	156	5	124	0	.	228
VPS13D	55187	bcgsc.ca	37	1	12335932	12335932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VPS13D	NM_015378	exon19	c.T2287C	p.F763L	.	.	60	5	55	0	.	95
VPS16	64601	bcgsc.ca	37	20	2843995	2843995	+	Missense_Mutation	SNP	C	C	A	rs202019988	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VPS16	NM_022575	exon15	c.C1427A	p.P476H	.	.	72	4	48	0	C|0.999;T|0.001	94
VPS16	64601	ucsc.edu	37	20	2842475	2842475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VPS16	NM_022575	exon10	c.C924A	p.Y308X	.	.	40	4	49	0	.	94
VSIG10	54621	mdanderson.org	37	12	118506348	118506348	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_019086	exon8	c.G1401A	p.E467E	.	.	147	20	116	0	.	.
VTI1A	143187	bcgsc.ca	37	10	114428700	114428700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	VTI1A	NM_145206	exon7	c.G503T	p.R168L	.	.	70	5	96	0	.	91
VWA8	23078	ucsc.edu;bcgsc.ca	37	13	42486237	42486237	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_015058	exon3	c.G309A	p.G103G	.	.	42	4	41	0	.	.
WARS	7453	bcgsc.ca	37	14	100813156	100813156	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WARS	NM_004184	exon7	c.G753T	p.V251V	.	.	70	5	63	0	.	153
WBP11	51729	bcgsc.ca	37	12	14943517	14943517	+	Silent	SNP	C	C	T	rs7971396	byfrequency	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WBP11	NM_016312	exon10	c.G1182A	p.P394P	.	.	81	5	62	0	C|0.987;T|0.013	92
WDFY4	57705	bcgsc.ca	37	10	49951176	49951176	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDFY4	NM_020945	exon12	c.T2042C	p.V681A	.	.	65	4	46	0	.	22
WDR11	55717	bcgsc.ca	37	10	122630804	122630804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR11	NM_018117	exon10	c.T1417C	p.C473R	.	.	89	5	81	0	.	226
WDR36	134430	bcgsc.ca	37	5	110461418	110461418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR36	NM_139281	exon22	c.G2631T	p.L877F	.	.	123	5	81	0	.	92
WDR47	22911	bcgsc.ca	37	1	109526068	109526068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR47	NM_001142550	exon11	c.A1955G	p.H652R	.	.	93	5	103	0	.	91
WDR63	126820	bcgsc.ca	37	1	85559272	85559272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR63	NM_145172	exon9	c.A989G	p.D330G	.	.	75	6	84	0	.	95
WDR63	126820	bcgsc.ca	37	1	85589817	85589817	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR63	NM_145172	exon19	c.G1995T	p.V665V	.	.	97	6	129	0	.	95
WDR90	197335	ucsc.edu	37	16	703774	703774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR90	NM_145294	exon13	c.G1408T	p.G470W	.	.	47	4	98	0	.	92
WDR96	80217	bcgsc.ca	37	10	105944840	105944840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WDR96	NM_025145	exon16	c.C2075T	p.S692L	.	.	68	4	56	0	.	95
WFDC8	90199	bcgsc.ca	37	20	44184399	44184399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WFDC8	NM_181510	exon4	c.A386G	p.E129G	.	.	89	4	95	0	.	90
WNK4	65266	ucsc.edu	37	17	40940700	40940700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	WNK4	NM_032387	exon11	c.T2042C	p.V681A	.	.	45	5	31	0	.	336
XPC	7508	ucsc.edu	37	3	14199513	14199513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	XPC	NM_004628	exon9	c.G1870T	p.E624X	.	.	32	4	21	0	.	662
XPNPEP2	7512	broad.mit.edu;bcgsc.ca	37	X	128893154	128893154	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	XPNPEP2	NM_003399	exon15	c.1368-2A>G	.	.	.	65	5	65	0	.	130
XPO1	7514	bcgsc.ca	37	2	61719829	61719829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	XPO1	NM_003400	exon14	c.T1439C	p.L480P	.	.	107	5	50	0	.	229
YIF1B	90522	bcgsc.ca	37	19	38800273	38800273	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	YIF1B	NM_001039672	exon2	c.G69T	p.R23R	.	.	17	4	20	0	.	68
YTHDC2	64848	bcgsc.ca	37	5	112871467	112871467	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	YTHDC2	NM_022828	exon7	c.A1074G	p.R358R	.	.	161	6	95	0	.	92
ZBTB47	92999	bcgsc.ca	37	3	42703096	42703096	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_145166	exon3	c.C1593T	p.T531T	.	.	27	4	30	0	.	.
ZC2HC1B	153918	broad.mit.edu	37	6	144207845	144207845	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001013623	exon4	c.G236A	p.W79X	.	.	133	7	111	0	.	.
ZC3H11A	9877	bcgsc.ca	37	1	203820195	203820195	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZC3H11A	NM_014827	exon19	c.C2117A	p.P706Q	.	.	146	6	73	0	.	515
ZC3HAV1	56829	bcgsc.ca	37	7	138738218	138738218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZC3HAV1	NM_020119	exon12	c.C2428A	p.H810N	.	.	108	6	75	0	.	91
ZCCHC9	84240	bcgsc.ca	37	5	80604521	80604521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZCCHC9	NM_001131036	exon3	c.C526T	p.P176S	.	.	149	5	127	0	.	91
ZCRB1	85437	bcgsc.ca	37	12	42711149	42711149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZCRB1	NM_033114	exon5	c.A326G	p.E109G	.	.	61	5	38	0	.	91
ZCWPW1	55063	bcgsc.ca	37	7	100016745	100016745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZCWPW1	NM_001258008	exon5	c.A350G	p.Q117R	.	.	103	5	82	0	.	90
ZDBF2	57683	bcgsc.ca	37	2	207174244	207174244	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZDBF2	NM_020923	exon5	c.A4992G	p.K1664K	.	.	95	4	62	0	.	3
ZFAT	57623	bcgsc.ca	37	8	135524788	135524788	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZFAT	NM_020863	exon14	c.C3291A	p.A1097A	.	.	77	6	74	0	.	90
ZFC3H1	196441	bcgsc.ca	37	12	72030409	72030409	+	Missense_Mutation	SNP	G	G	T	rs201900950	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZFC3H1	NM_144982	exon9	c.C1961A	p.P654H	.	.	106	6	61	0	G|0.999;A|0.001	138
ZFR2	23217	bcgsc.ca	37	19	3823291	3823291	+	Missense_Mutation	SNP	C	C	T	rs185400185	by1000genomes	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZFR2	NM_015174	exon8	c.G1324A	p.A442T	.	.	26	4	24	0	C|0.999;T|0.000	70
ZFR2	23217	ucsc.edu	37	19	3831818	3831818	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZFR2	NM_015174	exon4	c.C438A	p.P146P	.	.	45	4	64	2	.	70
ZFYVE16	9765	bcgsc.ca	37	5	79773099	79773099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZFYVE16	NM_001105251	exon19	c.A4523G	p.D1508G	.	.	56	4	36	0	.	90
ZIC3	7547	ucsc.edu;bcgsc.ca	37	X	136649386	136649386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZIC3	NM_003413	exon1	c.T536C	p.V179A	.	.	43	6	86	0	.	195
ZKSCAN7	55888	bcgsc.ca	37	3	44611718	44611718	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_018651	exon6	c.A1116G	p.E372E	.	.	78	4	42	0	.	.
ZMAT1	84460	bcgsc.ca	37	X	101138935	101138935	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZMAT1	NM_001011657	exon7	c.C1464A	p.T488T	.	.	165	6	121	0	.	131
ZMPSTE24	10269	bcgsc.ca	37	1	40737574	40737574	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZMPSTE24	NM_005857	exon6	c.C636A	p.V212V	.	.	124	5	99	0	.	226
ZNF117	51351	bcgsc.ca	37	7	64438794	64438794	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF117	NM_015852	exon4	c.A1155T	p.G385G	.	.	78	4	75	0	.	91
ZNF131	7690	bcgsc.ca	37	5	43175025	43175025	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF131	NM_003432	exon8	c.A1560G	p.E520E	.	.	152	7	112	0	.	90
ZNF132	7691	ucsc.edu;bcgsc.ca	37	19	58945522	58945522	+	Missense_Mutation	SNP	G	G	T	rs200662557	alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF132	NM_003433	exon3	c.C1289A	p.P430Q	.	.	48	4	45	0	G|0.999;A|0.000	92
ZNF221	7638	bcgsc.ca	37	19	44470190	44470190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF221	NM_013359	exon6	c.T536C	p.F179S	.	.	71	4	62	0	.	91
ZNF224	7767	bcgsc.ca	37	19	44612126	44612126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF224	NM_013398	exon6	c.T1813C	p.F605L	.	.	68	4	61	0	.	92
ZNF281	23528	bcgsc.ca	37	1	200377573	200377573	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF281	NM_012482	exon2	c.G1261T	p.G421C	.	.	363	10	211	0	.	154
ZNF287	57336	bcgsc.ca	37	17	16470656	16470656	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF287	NM_020653	exon2	c.T390C	p.I130I	.	.	51	4	73	0	.	90
ZNF292	23036	bcgsc.ca	37	6	87970667	87970667	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF292	NM_015021	exon8	c.G7320A	p.E2440E	.	.	82	4	62	0	.	72
ZNF300	91975	bcgsc.ca	37	5	150275866	150275866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF300	NM_001172831	exon7	c.T983C	p.L328P	.	.	62	4	43	0	.	92
ZNF337	26152	bcgsc.ca	37	20	25656418	25656418	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF337	NM_015655	exon5	c.C1506A	p.S502S	.	.	60	4	60	0	.	90
ZNF407	55628	bcgsc.ca	37	18	72345560	72345560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF407	NM_001146190	exon1	c.T2585C	p.I862T	.	.	71	6	64	0	.	92
ZNF41	7592	bcgsc.ca	37	X	47307360	47307360	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF41	NM_007130	exon5	c.A1809G	p.G603G	.	.	106	5	97	0	.	133
ZNF451	26036	bcgsc.ca	37	6	56963941	56963941	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF451	NM_001257273	exon3	c.186+2T>A	.	.	.	181	7	118	1	.	93
ZNF507	22847	bcgsc.ca	37	19	32844258	32844258	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF507	NM_001136156	exon3	c.G522T	p.V174V	.	.	49	4	59	0	.	230
ZNF521	25925	bcgsc.ca	37	18	22805757	22805757	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF521	NM_015461	exon4	c.C2125A	p.L709I	.	.	90	4	54	0	.	275
ZNF534	147658	bcgsc.ca	37	19	52942490	52942490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF534	NM_001143939	exon4	c.C1816A	p.L606I	.	.	91	4	63	0	.	68
ZNF536	9745	ucsc.edu;bcgsc.ca	37	19	31039499	31039499	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF536	NM_014717	exon4	c.G2973T	p.S991S	.	.	37	4	38	0	.	144
ZNF570	148268	bcgsc.ca	37	19	37967278	37967278	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF570	NM_144694	exon4	c.G198A	p.L66L	.	.	69	4	62	0	.	91
ZNF620	253639	broad.mit.edu;bcgsc.ca	37	3	40557547	40557547	+	Silent	SNP	C	C	A	rs148212912	byfrequency;alternate_allele	TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF620	NM_175888	exon5	c.C462A	p.T154T	.	.	82	5	60	0	C|1.000;T|0.000	91
ZNF621	285268	bcgsc.ca	37	3	40574138	40574138	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF621	NM_001098414	exon5	c.T877C	p.C293R	.	.	53	4	45	0	.	91
ZNF630	57232	bcgsc.ca	37	X	47919174	47919174	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF630	NM_001037735	exon5	c.T657C	p.C219C	.	.	142	5	121	0	.	131
ZNF638	27332	bcgsc.ca	37	2	71623296	71623296	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF638	NM_014497	exon11	c.T2403C	p.S801S	.	.	82	4	49	0	.	94
ZNF660	285349	ucsc.edu;bcgsc.ca	37	3	44636365	44636365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF660	NM_173658	exon3	c.T680C	p.F227S	.	.	41	4	28	0	.	90
ZNF761	388561	bcgsc.ca	37	19	53959245	53959245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF761	NM_001008401	exon7	c.A1484G	p.K495R	.	.	46	4	46	0	.	91
ZNF776	284309	ucsc.edu	37	19	58264916	58264916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF776	NM_173632	exon3	c.A418G	p.K140E	.	.	41	4	53	0	.	91
ZNF814	730051	mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	184	63	109	2	.	.
ZNF845	91664	bcgsc.ca	37	19	53854187	53854187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_138374	exon4	c.T259C	p.F87L	.	.	154	5	96	0	.	.
ZNF90	7643	bcgsc.ca	37	19	20216123	20216123	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF90	NM_007138	exon3	c.C224A	p.P75Q	.	.	61	4	47	0	.	48
ZNF91	7644	bcgsc.ca	37	19	23542369	23542369	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNF91	NM_003430	exon4	c.A3412G	p.K1138E	.	.	48	5	48	0	.	90
ZNHIT3	9326	ucsc.edu;bcgsc.ca	37	17	34848721	34848721	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZNHIT3	NM_004773	exon3	c.C183T	p.T61T	.	.	54	5	52	0	.	90
ZSCAN20	7579	bcgsc.ca	37	1	33960380	33960380	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZSCAN20	NM_145238	exon8	c.T2436C	p.H812H	.	.	86	4	91	0	.	93
ZSCAN5A	79149	ucsc.edu	37	19	56735085	56735085	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	ZSCAN5A	NM_024303	exon3	c.C503A	p.S168X	.	.	44	4	25	0	.	155
ZYG11A	440590	bcgsc.ca	37	1	53323088	53323088	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Y-01A-11D-A16V-10	TCGA-G3-A25Y-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6b50391f-d890-4ca0-b942-beab0f8bf1c9	9cfc4adf-3fd0-4f1f-b9e1-5f7a6e1469df	.	.	NM_001004339	exon3	c.C675A	p.T225T	.	.	70	4	87	0	.	.
