Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA1	19	bcgsc.ca	37	9	107568576	107568576	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA1	NM_005502	exon31	c.C4410A	p.I1470I	.	.	55	4	52	0	.	1016
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215843664	215843664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA12	NM_173076	exon32	c.G4841A	p.G1614E	.	.	128	22	75	0	.	99
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48443391	48443391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA13	NM_152701	exon39	c.G11985T	p.R3995S	.	.	50	14	48	0	.	521
ABCA7	10347	ucsc.edu;bcgsc.ca	37	19	1058628	1058628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCA7	NM_019112	exon38	c.T5161C	p.F1721L	.	.	41	5	60	0	.	98
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	87214868	87214868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCB1	NM_000927	exon5	c.246delA	p.A82fs	.	.	40	11	46	0	.	582
ABCC2	1244	bcgsc.ca	37	10	101611356	101611356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCC2	NM_000392	exon32	c.G4606T	p.G1536C	.	.	85	6	72	0	.	91
ABCC9	10060	ucsc.edu;bcgsc.ca	37	12	21991070	21991070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCC9	NM_005691	exon28	c.C3508A	p.P1170T	.	.	38	4	48	0	.	96
ABCG4	64137	bcgsc.ca	37	11	119027131	119027131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ABCG4	NM_022169	exon7	c.C779A	p.P260H	.	.	75	4	123	0	.	92
ACACB	32	bcgsc.ca	37	12	109687888	109687888	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ACACB	NM_001093	exon40	c.A5769G	p.E1923E	.	.	59	4	60	0	.	98
ACER3	55331	bcgsc.ca	37	11	76670044	76670044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ACER3	NM_018367	exon3	c.G236T	p.C79F	.	.	78	4	63	0	.	90
ACSF3	197322	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	89167289	89167289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ACSF3	NM_174917	exon3	c.C200T	p.T67M	.	.	13	6	45	0	.	68
ADAM17	6868	bcgsc.ca	37	2	9683385	9683385	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAM17	NM_003183	exon2	c.G127T	p.D43Y	.	.	55	4	37	0	.	659
ADAMTS18	170692	ucsc.edu;bcgsc.ca	37	16	77329000	77329000	+	Silent	SNP	T	T	C	rs142130362		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAMTS18	NM_199355	exon19	c.A2826G	p.T942T	.	.	29	4	38	0	T|1.000;C|0.000	1036
ADAMTS6	11174	bcgsc.ca	37	5	64748682	64748682	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAMTS6	NM_197941	exon5	c.C695A	p.P232Q	.	.	284	8	209	0	.	226
ADAMTS9	56999	broad.mit.edu	37	3	64587702	64587702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADAMTS9	NM_182920	exon26	c.A3935G	p.E1312G	.	.	57	5	49	0	.	230
ADCY10	55811	bcgsc.ca	37	1	167793985	167793985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADCY10	NM_018417	exon27	c.C3859A	p.L1287M	.	.	116	6	48	0	.	493
ADGB	79747	ucsc.edu;bcgsc.ca	37	6	147006934	147006934	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_024694	exon10	c.T1281C	p.F427F	.	.	64	6	27	0	.	.
ADNP	23394	bcgsc.ca	37	20	49510734	49510734	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ADNP	NM_015339	exon5	c.C517A	p.R173R	.	.	229	7	177	0	.	92
AGBL1	123624	ucsc.edu;bcgsc.ca	37	15	86838529	86838529	+	Missense_Mutation	SNP	T	T	C	rs190282686	by1000genomes	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_152336	exon16	c.T2126C	p.V709A	.	.	37	4	30	1	T|0.999;C|0.000	.
AGO2	27161	bcgsc.ca	37	8	141570509	141570509	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_012154	exon5	c.C619A	p.R207R	.	.	75	5	46	0	.	.
AHNAK	79026	bcgsc.ca	37	11	62300037	62300037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AHNAK	NM_001620	exon5	c.G1852A	p.E618K	.	.	58	4	93	0	.	109
AKR1B10	57016	bcgsc.ca	37	7	134217801	134217801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AKR1B10	NM_020299	exon4	c.G397T	p.G133C	.	.	89	5	85	0	.	132
ALB	213	bcgsc.ca	37	4	74280851	74280851	+	Silent	SNP	C	C	A	rs201407867	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ALB	NM_000477	exon9	c.C1158A	p.A386A	.	.	75	4	62	0	C|0.999;T|0.000	96
ALMS1	7840	bcgsc.ca	37	2	73718263	73718263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ALMS1	NM_015120	exon10	c.G9174T	p.L3058F	.	.	113	5	81	0	.	142
AMZ2	51321	bcgsc.ca	37	17	66253100	66253100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AMZ2	NM_001033572	exon8	c.T1073C	p.L358P	.	.	115	6	68	0	.	22
ANK3	288	bcgsc.ca	37	10	61835436	61835436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ANK3	NM_020987	exon37	c.T5203C	p.C1735R	.	.	46	4	54	0	.	107
ANKS6	203286	bcgsc.ca	37	9	101530509	101530509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ANKS6	NM_173551	exon11	c.T1996C	p.S666P	.	.	67	4	73	0	.	92
ANO9	338440	bcgsc.ca	37	11	428735	428735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ANO9	NM_001012302	exon12	c.T1007C	p.L336P	.	.	86	6	132	1	.	227
AP3B2	8120	ucsc.edu;bcgsc.ca	37	15	83331891	83331891	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	AP3B2	NM_004644	exon21	c.C2535A	p.T845T	.	.	31	4	48	0	.	94
AP5M1	55745	bcgsc.ca	37	14	57752945	57752945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_018229	exon7	c.A1298G	p.H433R	.	.	80	4	40	0	.	.
APOB	338	bcgsc.ca	37	2	21225769	21225769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	APOB	NM_000384	exon29	c.G12525T	p.L4175F	.	.	84	6	54	0	.	175
ARAP3	64411	bcgsc.ca	37	5	141053301	141053301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARAP3	NM_022481	exon5	c.T773C	p.L258P	.	.	74	5	99	0	.	291
ARFGEF2	10564	bcgsc.ca	37	20	47648639	47648639	+	Missense_Mutation	SNP	G	G	T	rs201225495	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARFGEF2	NM_006420	exon38	c.G5117T	p.R1706L	.	.	96	4	51	0	G|1.000;A|0.000	358
ARHGAP12	94134	bcgsc.ca	37	10	32128234	32128234	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARHGAP12	NM_018287	exon9	c.A1385G	p.K462R	.	.	77	4	63	0	.	227
ARHGAP33	115703	bcgsc.ca	37	19	36278880	36278880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARHGAP33	NM_052948	exon21	c.A2930C	p.Y977S	.	.	142	37	229	12	.	229
ARHGEF10	9639	bcgsc.ca	37	8	1853752	1853752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARHGEF10	NM_014629	exon17	c.A1837G	p.S613G	.	.	65	4	64	0	.	272
ARHGEF7	8874	bcgsc.ca	37	13	111811409	111811409	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARHGEF7	NM_001113511	exon3	c.G288T	p.L96L	.	.	122	7	104	1	.	232
ARID5B	84159	bcgsc.ca	37	10	63852667	63852667	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARID5B	NM_032199	exon10	c.C3445A	p.P1149T	.	.	52	4	48	0	.	94
ARVCF	421	ucsc.edu;bcgsc.ca	37	22	19967280	19967280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ARVCF	NM_001670	exon6	c.G1382A	p.R461H	.	.	44	5	46	0	.	91
ASB12	142689	bcgsc.ca	37	X	63445157	63445157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ASB12	NM_130388	exon2	c.T374C	p.L125P	.	.	70	4	51	0	.	228
ASB2	51676	bcgsc.ca	37	14	94423134	94423134	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ASB2	NM_001202429	exon3	c.T289C	p.L97L	.	.	56	4	66	0	.	228
ASCC3	10973	bcgsc.ca	37	6	101099463	101099463	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ASCC3	NM_006828	exon19	c.C3048A	p.S1016S	.	.	249	7	156	0	.	96
ASIC3	9311	ucsc.edu;mdanderson.org	37	7	150746506	150746506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_020322	exon1	c.G534A	p.T178T	.	.	17	8	14	0	.	.
ATAD2	29028	bcgsc.ca	37	8	124358484	124358484	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATAD2	NM_014109	exon18	c.C2374A	p.R792R	.	.	65	5	34	0	.	92
ATF7IP	55729	bcgsc.ca	37	12	14613703	14613703	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATF7IP	NM_018179	exon9	c.T2433C	p.S811S	.	.	47	4	51	0	.	252
ATM	472	bcgsc.ca	37	11	108126996	108126996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATM	NM_000051	exon14	c.G2179T	p.G727C	.	.	61	4	55	0	.	3419
ATP11B	23200	bcgsc.ca	37	3	182583271	182583271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP11B	NM_014616	exon13	c.G1228T	p.G410C	.	.	112	5	86	0	.	93
ATP13A3	79572	bcgsc.ca	37	3	194174466	194174466	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP13A3	NM_024524	exon9	c.C807A	p.T269T	.	.	198	8	128	0	.	69
ATP1A3	478	broad.mit.edu;mdanderson.org	37	19	42489335	42489335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1A3	NM_001256214	exon8	c.C767T	p.T256M	.	.	23	8	26	1	.	92
ATP1B4	23439	ucsc.edu;bcgsc.ca	37	X	119509404	119509404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP1B4	NM_001142447	exon5	c.T740C	p.I247T	.	.	41	4	30	0	.	131
ATP2A3	489	bcgsc.ca	37	17	3848397	3848397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP2A3	NM_174956	exon9	c.G1141A	p.E381K	.	.	16	4	21	0	.	156
ATP6V1C2	245973	bcgsc.ca	37	2	10912680	10912680	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP6V1C2	NM_001039362	exon8	c.A582T	p.S194S	.	.	83	4	96	0	.	91
ATP6V1E1	529	bcgsc.ca	37	22	18082837	18082837	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP6V1E1	NM_001696	exon6	c.C391A	p.R131R	.	.	244	7	205	0	.	577
ATP7A	538	bcgsc.ca	37	X	77264753	77264753	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP7A	NM_000052	exon7	c.C1862T	p.T621I	.	.	75	4	66	0	.	130
ATP7A	538	bcgsc.ca	37	X	77296101	77296101	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP7A	NM_000052	exon19	c.G3671T	p.G1224V	.	.	51	4	47	0	.	130
ATP8A1	10396	bcgsc.ca	37	4	42457325	42457325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATP8A1	NM_006095	exon29	c.T2806C	p.F936L	.	.	128	6	103	0	.	92
ATRX	546	bcgsc.ca	37	X	76939042	76939042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ATRX	NM_000489	exon9	c.A1706G	p.D569G	.	.	201	6	113	0	.	248
BAG4	9530	bcgsc.ca	37	8	38050256	38050256	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BAG4	NM_004874	exon2	c.G321T	p.A107A	.	.	119	5	65	0	.	228
BAZ2B	29994	bcgsc.ca	37	2	160287386	160287386	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BAZ2B	NM_013450	exon10	c.A2182G	p.S728G	.	.	122	6	66	1	.	94
BBS7	55212	bcgsc.ca	37	4	122754391	122754391	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BBS7	NM_018190	exon15	c.C1671A	p.T557T	.	.	58	4	76	0	.	91
BDKRB2	624	bcgsc.ca	37	14	96707297	96707297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BDKRB2	NM_000623	exon3	c.G632A	p.C211Y	.	.	76	4	63	0	.	662
BHLHE40	8553	bcgsc.ca	37	3	5022070	5022070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BHLHE40	NM_003670	exon3	c.C235A	p.L79I	.	.	46	4	68	0	.	91
BIN2	51411	bcgsc.ca	37	12	51685711	51685711	+	Silent	SNP	G	G	T	rs201888825	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BIN2	NM_016293	exon10	c.C1179A	p.T393T	.	.	166	7	182	0	G|0.999;A|0.000	91
BIVM-ERCC5	0	bcgsc.ca	37	13	103515198	103515198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001204425	exon16	c.A3061G	p.T1021A	.	.	74	4	62	0	.	.
BMP2K	55589	bcgsc.ca	37	4	79768396	79768396	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BMP2K	NM_017593	exon6	c.A723G	p.K241K	.	.	96	5	93	0	.	383
BMS1	9790	bcgsc.ca	37	10	43318713	43318713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BMS1	NM_014753	exon20	c.G3280T	p.D1094Y	.	.	97	6	91	1	.	93
BRAP	8315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112093435	112093435	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRAP	NM_006768	exon10	c.C1246G	p.L416V	.	.	105	38	78	0	.	710
BRCA2	675	bcgsc.ca	37	13	32911483	32911483	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRCA2	NM_000059	exon11	c.A2991G	p.L997L	.	.	125	5	70	0	.	3153
BRWD1	54014	bcgsc.ca	37	21	40590434	40590434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRWD1	NM_018963	exon30	c.C3535A	p.L1179I	.	.	74	4	38	0	.	94
BRWD3	254065	bcgsc.ca	37	X	79990687	79990687	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BRWD3	NM_153252	exon10	c.G924T	p.P308P	.	.	152	7	97	0	.	134
BTBD10	84280	bcgsc.ca	37	11	13435146	13435146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	BTBD10	NM_032320	exon6	c.G739A	p.E247K	.	.	71	4	42	0	.	90
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57512438	57512438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001145101	exon3	c.C1307A	p.S436Y	.	.	52	26	71	0	.	.
C11orf30	56946	bcgsc.ca	37	11	76207293	76207293	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C11orf30	NM_020193	exon9	c.C1143A	p.T381T	.	.	75	5	45	0	.	232
C11orf70	85016	bcgsc.ca	37	11	101953906	101953906	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C11orf70	NM_032930	exon7	c.T780C	p.C260C	.	.	80	4	70	0	.	91
C15orf41	84529	bcgsc.ca	37	15	37002097	37002097	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C15orf41	NM_001130010	exon10	c.C651T	p.A217A	.	.	64	4	53	0	.	46
C20orf111	51526	bcgsc.ca	37	20	42835580	42835580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C20orf111	NM_016470	exon2	c.G18T	p.K6N	.	.	154	5	118	0	.	90
C2orf49	79074	bcgsc.ca	37	2	105961787	105961787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C2orf49	NM_024093	exon4	c.C658A	p.P220T	.	.	218	7	146	0	.	90
C3orf67	200844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	58855185	58855185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C3orf67	NM_198463	exon9	c.G509A	p.R170Q	.	.	154	46	100	0	.	68
C5orf42	65250	bcgsc.ca	37	5	37169560	37169560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C5orf42	NM_023073	exon34	c.C6566A	p.P2189Q	.	.	97	4	56	0	.	94
C6orf120	387263	ucsc.edu	37	6	170102672	170102672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C6orf120	NM_001029863	exon1	c.G117T	p.W39C	.	.	46	4	44	0	.	90
C6orf170	221322	broad.mit.edu	37	6	121638682	121638682	+	Missense_Mutation	SNP	G	G	T	rs75540618	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	C6orf170,brain,glioma,0	C6orf170	NM_152730	exon3	c.C454A	p.R152S	.	.	651	7	473	2	G|0.954;A|0.046	92
C9	735	bcgsc.ca	37	5	39306884	39306884	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	C9	NM_001737	exon9	c.C1251A	p.T417T	.	.	117	5	65	0	.	90
CACNA1E	777	bcgsc.ca	37	1	181620575	181620575	+	Silent	SNP	C	C	A	rs201080304	byfrequency	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CACNA1E	NM_001205293	exon7	c.C1053A	p.S351S	.	.	211	7	128	0	A|0.001;C|0.995;T|0.004	95
CACNA1S	779	bcgsc.ca	37	1	201058399	201058399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CACNA1S	NM_000069	exon6	c.A887G	p.D296G	.	.	119	8	87	0	.	94
CACNA2D3	55799	bcgsc.ca	37	3	55052278	55052278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CACNA2D3	NM_018398	exon35	c.C2921A	p.P974Q	.	.	77	4	41	0	.	138
CADPS	8618	broad.mit.edu;bcgsc.ca	37	3	62578422	62578422	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CADPS	NM_003716	exon7	c.T1327G	p.W443G	.	.	13	5	24	0	.	281
CAPSL	133690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35910562	35910562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CAPSL	NM_144647	exon3	c.T221A	p.V74D	.	.	115	36	94	0	.	91
CARS	833	ucsc.edu	37	11	3047929	3047929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CARS	NM_001014437	exon10	c.A1130G	p.Q377R	.	.	47	4	48	0	.	664
CASC5	57082	bcgsc.ca	37	15	40901050	40901050	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASC5	NM_144508	exon5	c.C141A	p.S47S	.	.	50	5	32	0	.	660
CASK	8573	bcgsc.ca	37	X	41394192	41394192	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASK	NM_003688	exon23	c.A2175G	p.E725E	.	.	111	5	65	0	.	616
CASR	846	bcgsc.ca	37	3	121976051	121976051	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASR	NM_001178065	exon3	c.C309A	p.T103T	.	.	58	4	48	0	.	97
CASR	846	ucsc.edu;bcgsc.ca	37	3	122003982	122003982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CASR	NM_001178065	exon7	c.A3211G	p.S1071G	.	.	44	4	34	0	.	97
CATSPERB	79820	bcgsc.ca	37	14	92047340	92047340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CATSPERB	NM_024764	exon27	c.G3244T	p.G1082C	.	.	114	5	110	1	.	138
CBFA2T3	863	bcgsc.ca	37	16	88958765	88958765	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CBFA2T3	NM_005187	exon4	c.G508T	p.G170W	.	.	46	4	96	0	.	722
CBL	867	bcgsc.ca	37	11	119148505	119148505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CBL	NM_005188	exon7	c.T1046C	p.L349P	.	.	139	5	105	0	.	4020
CBLB	868	bcgsc.ca	37	3	105412384	105412384	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CBLB	NM_170662	exon13	c.C2008A	p.R670R	.	.	146	7	113	0	.	849
CCDC130	81576	ucsc.edu	37	19	13869983	13869983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC130	NM_030818	exon8	c.G470T	p.S157I	.	.	40	4	28	0	.	90
CCDC164	92749	bcgsc.ca	37	2	26654845	26654845	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC164	NM_145038	exon7	c.A859G	p.I287V	.	.	104	6	101	0	.	92
CCDC170	80129	bcgsc.ca	37	6	151917673	151917673	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_025059	exon9	c.C1671A	p.T557T	.	.	89	6	73	0	.	.
CCDC176	80127	bcgsc.ca	37	14	74516723	74516723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_025057	exon8	c.A1111G	p.K371E	.	.	221	8	179	0	.	.
CCDC6	8030	ucsc.edu;bcgsc.ca	37	10	61554242	61554242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC6	NM_005436	exon8	c.C1219A	p.H407N	.	.	41	4	35	0	.	686
CCDC69	26112	bcgsc.ca	37	5	150563911	150563911	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC69	NM_015621	exon8	c.T707C	p.L236P	.	.	72	4	90	0	.	92
CCDC82	79780	bcgsc.ca	37	11	96106552	96106552	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCDC82	NM_024725	exon6	c.G1071T	p.L357L	.	.	185	6	128	0	.	91
CCR4	1233	bcgsc.ca	37	3	32995340	32995340	+	Silent	SNP	G	G	T	rs143876966	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CCR4	NM_005508	exon2	c.G426T	p.A142A	.	.	189	7	174	0	G|1.000;A|0.000	658
CD2AP	23607	bcgsc.ca	37	6	47576948	47576948	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CD2AP	NM_012120	exon16	c.A1722G	p.E574E	.	.	102	5	70	0	.	92
CD44	960	bcgsc.ca	37	11	35211584	35211584	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CD44	NM_001001391	exon5	c.C639A	p.T213T	.	.	98	5	65	0	.	227
CDH8	1006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	61859057	61859057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDH8	NM_001796	exon5	c.A694G	p.M232V	.	.	79	25	45	0	.	161
CDK15	65061	bcgsc.ca	37	2	202687626	202687626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDK15	NM_001261435	exon5	c.G543T	p.M181I	.	.	81	4	50	0	.	664
CDK17	5128	bcgsc.ca	37	12	96674594	96674594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDK17	NM_001170464	exon16	c.C1526A	p.P509Q	.	.	54	4	44	0	.	550
CDKL2	8999	bcgsc.ca	37	4	76523329	76523329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDKL2	NM_003948	exon8	c.C952A	p.Q318K	.	.	224	7	209	0	.	454
CDYL	9425	bcgsc.ca	37	6	4943897	4943897	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CDYL	NM_004824	exon5	c.A1239G	p.E413E	.	.	81	5	61	0	.	90
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180064893	180064893	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CEP350	NM_014810	exon35	c.T8747C	p.V2916A	.	.	140	31	73	0	.	26
CEP70	80321	bcgsc.ca	37	3	138256034	138256034	+	Silent	SNP	G	G	T	rs147011001	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CEP70	NM_024491	exon7	c.C621A	p.T207T	.	.	113	6	60	0	G|0.998;A|0.002	69
CFH	3075	bcgsc.ca	37	1	196658595	196658595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CFH	NM_001014975	exon8	c.A1010G	p.H337R	.	.	142	5	69	0	.	566
CHD1	1105	bcgsc.ca	37	5	98208182	98208182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD1	NM_001270	exon26	c.C3649A	p.H1217N	.	.	228	8	143	0	.	274
CHD4	1108	bcgsc.ca	37	12	6691862	6691862	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD4	NM_001273	exon29	c.G4289T	p.R1430L	.	.	60	4	102	0	.	228
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	6196807	6196807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD5	NM_015557	exon16	c.T2555A	p.L852H	.	.	53	17	80	0	.	719
CHD8	57680	bcgsc.ca	37	14	21894358	21894358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CHD8	NM_001170629	exon4	c.T1645C	p.S549P	.	.	107	4	85	0	.	277
CINP	51550	bcgsc.ca	37	14	102816316	102816316	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CINP	NM_001177611	exon4	c.C421A	p.H141N	.	.	115	5	74	0	.	178
CIRH1A	84916	bcgsc.ca	37	16	69201019	69201019	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CIRH1A	NM_032830	exon16	c.T1875C	p.P625P	.	.	97	7	92	0	.	90
CIRH1A	84916	bcgsc.ca	37	16	69201087	69201087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CIRH1A	NM_032830	exon16	c.A1943G	p.K648R	.	.	57	5	60	0	.	90
CLASP1	23332	bcgsc.ca	37	2	122363374	122363374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CLASP1	NM_001207051	exon2	c.A98G	p.D33G	.	.	136	5	113	0	.	91
CLEC2B	9976	bcgsc.ca	37	12	10005961	10005961	+	Missense_Mutation	SNP	C	C	A	rs14999		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CLEC2B	NM_005127	exon5	c.G388T	p.G130C	.	.	81	5	68	0	C|1.000;|0.000	90
CLEC4E	26253	bcgsc.ca	37	12	8689861	8689861	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CLEC4E	NM_014358	exon4	c.T222C	p.G74G	.	.	74	4	59	0	.	90
CLTCL1	8218	bcgsc.ca	37	22	19209101	19209101	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CLTCL1	NM_001835	exon17	c.G2595T	p.Q865H	.	.	66	4	64	0	.	230
CNKSR2	22866	bcgsc.ca	37	X	21667013	21667013	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CNKSR2	NM_014927	exon21	c.C2757T	p.A919A	.	.	78	4	46	0	.	625
CNTLN	54875	bcgsc.ca	37	9	17235790	17235790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CNTLN	NM_017738	exon4	c.G669T	p.K223N	.	.	106	5	70	0	.	91
CNTRL	11064	bcgsc.ca	37	9	123880641	123880641	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CNTRL	NM_007018	exon10	c.A1473G	p.K491K	.	.	174	6	127	0	.	661
COG2	22796	bcgsc.ca	37	1	230822734	230822734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COG2	NM_007357	exon13	c.G1434T	p.L478F	.	.	91	4	63	0	.	90
COL19A1	1310	bcgsc.ca	37	6	70646734	70646734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COL19A1	NM_001858	exon8	c.A805G	p.S269G	.	.	98	5	60	0	.	156
COL24A1	255631	broad.mit.edu	37	1	86313425	86313425	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COL24A1	NM_152890	exon39	c.G3385T	p.E1129X	.	.	126	9	74	0	.	94
COL4A6	1288	bcgsc.ca	37	X	107406261	107406261	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COL4A6	NM_001847	exon41	c.T4080C	p.S1360S	.	.	71	4	85	0	.	199
COLQ	8292	bcgsc.ca	37	3	15563131	15563131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COLQ	NM_080539	exon1	c.T2C	p.M1T	.	.	53	4	54	0	.	90
COMMD3	23412	bcgsc.ca	37	10	22606864	22606864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	COMMD3	NM_012071	exon2	c.C191A	p.A64E	.	.	134	5	151	0	.	115
COMMD3-BMI1	0	bcgsc.ca	37	10	22618314	22618314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001204062	exon14	c.C1253T	p.P418L	.	.	71	4	77	0	.	.
CPA2	1358	bcgsc.ca	37	7	129915057	129915057	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPA2	NM_001869	exon6	c.A555G	p.T185T	.	.	117	5	108	1	.	91
CPEB4	80315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	173382915	173382915	+	Silent	SNP	G	G	T	rs199562365	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPEB4	NM_030627	exon10	c.G1965T	p.V655V	.	.	39	6	27	0	G|0.999;A|0.001	90
CPSF3	51692	bcgsc.ca	37	2	9574012	9574012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPSF3	NM_016207	exon6	c.G532T	p.G178C	.	.	350	10	199	0	.	153
CPT1A	1374	ucsc.edu;bcgsc.ca	37	11	68525193	68525193	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CPT1A	NM_001876	exon19	c.T2241C	p.S747S	.	.	42	4	30	0	.	149
CRYZL1	9946	bcgsc.ca	37	21	34974645	34974645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CRYZL1	NM_145858	exon8	c.G472T	p.G158C	.	.	87	7	82	0	.	90
CSF2RB	1439	ucsc.edu	37	22	37333535	37333535	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CSF2RB	NM_000395	exon14	c.C1685A	p.P562H	.	.	26	4	18	0	.	93
CSMD3	114788	bcgsc.ca	37	8	114031320	114031320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CSMD3	NM_052900	exon6	c.C1006A	p.R336S	.	.	329	10	180	0	.	1132
CSNK1G3	1456	bcgsc.ca	37	5	122940462	122940462	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CSNK1G3	NM_001044723	exon11	c.C1227A	p.T409T	.	.	220	9	138	0	.	358
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41275047	41275047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTNNB1	NM_001098209	exon9	c.C1213T	p.L405F	.	.	63	18	56	0	.	24361
CTSH	1512	bcgsc.ca	37	15	79227333	79227333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTSH	NM_004390	exon5	c.C392A	p.P131H	.	.	45	4	62	0	.	577
CTTNBP2	83992	ucsc.edu	37	7	117359630	117359630	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CTTNBP2	NM_033427	exon21	c.A4572G	p.S1524S	.	.	47	5	24	0	.	94
CUBN	8029	bcgsc.ca	37	10	16870860	16870860	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CUBN	NM_001081	exon66	c.A10708G	p.T3570A	.	.	78	5	66	0	.	166
CUL9	23113	ucsc.edu;bcgsc.ca	37	6	43172823	43172823	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CUL9	NM_015089	exon23	c.G4602T	p.L1534F	.	.	25	5	37	0	.	529
CWC25	54883	bcgsc.ca	37	17	36966010	36966010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_017748	exon6	c.A635G	p.K212R	.	.	99	5	72	0	.	.
CXCR2P1	3580	ucsc.edu	37	2	218924548	218924548	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	20	5	20	0	.	.
CYP20A1	57404	bcgsc.ca	37	2	204161547	204161547	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CYP20A1	NM_177538	exon13	c.G1305T	p.V435V	.	.	165	6	100	0	.	90
CYP4V2	285440	bcgsc.ca	37	4	187130034	187130034	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	CYP4V2	NM_207352	exon9	c.C1106A	p.P369H	.	.	71	4	144	0	.	90
CYTB	0	broad.mit.edu	37	MT	14918	14918	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361789	exon1	c.G172A	p.D58N	.	.	500	10	221	0	.	.
DACT1	51339	bcgsc.ca	37	14	59112051	59112051	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DACT1	NM_016651	exon4	c.C710A	p.S237Y	.	.	51	4	95	0	.	291
DBR1	51163	bcgsc.ca	37	3	137885968	137885968	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DBR1	NM_016216	exon5	c.T669C	p.F223F	.	.	74	5	82	0	.	90
DCAF5	8816	bcgsc.ca	37	14	69542062	69542062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DCAF5	NM_003861	exon7	c.G946T	p.G316C	.	.	160	8	150	0	.	91
DCAF8L1	139425	bcgsc.ca	37	X	27998357	27998357	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DCAF8L1	NM_001017930	exon1	c.G1095A	p.R365R	.	.	65	4	70	0	.	112
DCHS2	54798	bcgsc.ca	37	4	155241770	155241770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DCHS2	NM_017639	exon14	c.T3416C	p.V1139A	.	.	60	5	55	0	.	94
DCLK1	9201	bcgsc.ca	37	13	36382414	36382414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DCLK1	NM_004734	exon14	c.G1810T	p.G604W	.	.	92	5	58	0	.	826
DCUN1D4	23142	bcgsc.ca	37	4	52752732	52752732	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DCUN1D4	NM_015115	exon6	c.344-2A>G	.	.	.	156	6	84	0	.	92
DDX12P	440081	bcgsc.ca	37	12	9590662	9590662	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	76	1	210	1	.	.
DDX20	11218	bcgsc.ca	37	1	112303649	112303649	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX20	NM_007204	exon6	c.G864T	p.L288F	.	.	82	4	85	0	.	227
DDX21	9188	bcgsc.ca	37	10	70738679	70738679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX21	NM_004728	exon13	c.G1984T	p.G662C	.	.	231	10	152	1	.	228
DDX42	11325	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61890756	61890756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DDX42	NM_203499	exon15	c.G1844T	p.R615L	.	.	85	23	87	0	.	230
DEFB129	140881	bcgsc.ca	37	20	207970	207970	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DEFB129	NM_080831	exon1	c.A41G	p.Q14R	.	.	65	4	39	0	.	91
DENND4B	9909	mdanderson.org	37	1	153907297	153907297	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DENND4B	NM_014856	exon18	c.G2712A	p.Q904Q	.	.	52	12	53	0	.	69
DEPDC1B	55789	bcgsc.ca	37	5	59901525	59901525	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DEPDC1B	NM_001145208	exon8	c.C1057A	p.R353R	.	.	59	5	44	0	.	91
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	169938117	169938117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DHRS9	NM_005771	exon5	c.T26A	p.L9Q	.	.	50	11	31	0	.	90
DIDO1	11083	bcgsc.ca	37	20	61542308	61542308	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DIDO1	NM_080797	exon3	c.C657A	p.P219P	.	.	61	4	82	0	.	96
DIDO1	11083	ucsc.edu	37	20	61524171	61524171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DIDO1	NM_080797	exon13	c.A3245G	p.Y1082C	.	.	35	4	36	0	.	96
DIO1	1733	bcgsc.ca	37	1	54370338	54370338	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DIO1	NM_000792	exon2	c.338-1G>T	.	.	.	222	6	247	0	.	90
DNAH2	146754	bcgsc.ca	37	17	7664250	7664250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH2	NM_020877	exon17	c.G2978T	p.R993L	.	.	78	6	132	0	.	102
DNAH3	55567	bcgsc.ca	37	16	21048099	21048099	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH3	NM_017539	exon35	c.G5022A	p.L1674L	.	.	173	6	130	0	.	167
DNAH6	1768	bcgsc.ca	37	2	84896417	84896417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH6	NM_001370	exon38	c.C6089A	p.P2030H	.	.	145	6	106	0	.	69
DNAH8	1769	bcgsc.ca	37	6	38723786	38723786	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH8	NM_001206927	exon10	c.C1446A	p.A482A	.	.	57	4	54	0	.	615
DNAH8	1769	bcgsc.ca	37	6	38874177	38874177	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH8	NM_001206927	exon63	c.A9342G	p.S3114S	.	.	86	5	51	0	.	615
DNAH9	1770	bcgsc.ca	37	17	11572819	11572819	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAH9	NM_001372	exon17	c.C3061A	p.R1021R	.	.	72	4	73	0	.	168
DNAJC14	85406	ucsc.edu	37	12	56221891	56221891	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAJC14	NM_032364	exon2	c.A552G	p.S184S	.	.	34	4	54	1	.	229
DNAJC15	29103	bcgsc.ca	37	13	43659938	43659938	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAJC15	NM_013238	exon5	c.C346A	p.H116N	.	.	146	6	109	0	.	650
DNAJC25	548645	bcgsc.ca	37	9	114412109	114412109	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNAJC25	NM_001015882	exon3	c.C866A	p.S289Y	.	.	139	5	119	0	.	22
DNAL1	83544	bcgsc.ca	37	14	74156121	74156121	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_031427	exon7	c.G435T	p.L145L	.	.	142	7	113	0	.	.
DNTT	1791	ucsc.edu;bcgsc.ca	37	10	98064323	98064323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DNTT	NM_001017520	exon1	c.G69T	p.M23I	.	.	31	4	27	0	.	228
DOCK11	139818	bcgsc.ca	37	X	117815070	117815070	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DOCK11	NM_144658	exon50	c.A5721G	p.E1907E	.	.	92	4	85	0	.	93
DOCK7	85440	bcgsc.ca	37	1	63099172	63099172	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DOCK7	NM_001271999	exon10	c.C1113A	p.T371T	.	.	92	5	58	0	.	92
DOPEY1	23033	bcgsc.ca	37	6	83838706	83838706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DOPEY1	NM_015018	exon16	c.A1820G	p.Q607R	.	.	77	4	62	0	.	155
DOPEY1	23033	bcgsc.ca	37	6	83846933	83846933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DOPEY1	NM_015018	exon21	c.A3172G	p.K1058E	.	.	104	5	79	0	.	155
DOT1L	84444	bcgsc.ca	37	19	2216305	2216305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DOT1L	NM_032482	exon20	c.G1949T	p.S650I	.	.	57	5	78	0	.	132
DPP6	1804	bcgsc.ca	37	7	154659755	154659755	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DPP6	NM_130797	exon18	c.C1765A	p.R589R	.	.	50	4	54	0	.	652
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134018356	134018356	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	DPYSL4	NM_006426	exon14	c.T1641C	p.D547D	.	.	68	29	86	0	.	514
EDC4	23644	ucsc.edu	37	16	67915689	67915689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EDC4	NM_014329	exon22	c.T2945C	p.L982P	.	.	47	4	66	1	.	92
EFCAB6	64800	bcgsc.ca	37	22	44028085	44028085	+	Missense_Mutation	SNP	G	G	T	rs35376417	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EFCAB6	NM_022785	exon19	c.C2132A	p.P711Q	.	.	176	6	156	0	G|0.997;A|0.003	97
EFEMP2	30008	ucsc.edu	37	11	65637649	65637649	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EFEMP2	NM_016938	exon6	c.T550C	p.F184L	.	.	41	4	73	0	.	91
EHMT1	79813	ucsc.edu;bcgsc.ca	37	9	140693366	140693366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EHMT1	NM_024757	exon17	c.G2607T	p.Q869H	.	.	23	4	25	0	.	154
EIF2AK2	5610	bcgsc.ca	37	2	37334471	37334471	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EIF2AK2	NM_001135651	exon17	c.G1601T	p.R534M	.	.	231	6	162	0	.	794
EIF2AK2	5610	bcgsc.ca	37	2	37349761	37349761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EIF2AK2	NM_001135651	exon12	c.A955G	p.N319D	.	.	140	5	100	0	.	794
EIF2AK4	440275	bcgsc.ca	37	15	40289257	40289257	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EIF2AK4	NM_001013703	exon19	c.A2859G	p.Q953Q	.	.	147	5	157	0	.	757
EIF3B	8662	bcgsc.ca	37	7	2402371	2402371	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EIF3B	NM_001037283	exon3	c.C784A	p.R262R	.	.	76	5	67	0	.	68
ENGASE	64772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77077980	77077980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ENGASE	NM_001042573	exon7	c.G873T	p.R291S	.	.	116	37	99	1	.	91
EPB41L3	23136	ucsc.edu;bcgsc.ca	37	18	5397364	5397364	+	Missense_Mutation	SNP	G	G	T	rs140230336	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPB41L3	NM_012307	exon18	c.C2534A	p.P845Q	.	.	50	4	44	0	G|0.998;A|0.002	95
EPHA3	2042	ucsc.edu;bcgsc.ca	37	3	89391167	89391167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA3	NM_005233	exon5	c.C1233A	p.A411A	.	.	53	5	42	0	.	1500
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	97202883	97202883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHA6	NM_001080448	exon10	c.T2180C	p.I727T	.	.	93	39	85	0	.	1561
EPHB1	2047	bcgsc.ca	37	3	134670261	134670261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EPHB1	NM_004441	exon3	c.T172C	p.Y58H	.	.	60	5	47	0	.	1492
EPM2AIP1	9852	bcgsc.ca	37	3	37033538	37033538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_014805	exon1	c.G1031T	p.R344I	.	.	88	4	71	0	.	.
ERCC6	2074	bcgsc.ca	37	10	50741005	50741005	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ERCC6	NM_000124	exon2	c.A6G	p.Q2Q	.	.	44	4	40	0	.	1153
ERGIC2	51290	ucsc.edu;bcgsc.ca	37	12	29509352	29509352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ERGIC2	NM_016570	exon8	c.A535G	p.N179D	.	.	43	4	37	0	.	91
ESPNP	284729	broad.mit.edu	37	1	17033681	17033681	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	38	6	54	0	.	.
ESRP1	54845	ucsc.edu;bcgsc.ca	37	8	95654259	95654259	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ESRP1	NM_001122827	exon2	c.A208G	p.I70V	.	.	42	4	38	0	.	94
ESRP2	80004	bcgsc.ca	37	16	68265892	68265892	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ESRP2	NM_024939	exon10	c.A1112G	p.E371G	.	.	59	5	51	0	.	91
EYA3	2140	bcgsc.ca	37	1	28301035	28301035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	EYA3	NM_001990	exon18	c.T1664C	p.I555T	.	.	70	4	65	0	.	93
FAF1	11124	ucsc.edu	37	1	51121139	51121139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAF1	NM_007051	exon8	c.G719T	p.W240L	.	.	40	4	45	0	.	652
FAM149B1	317662	bcgsc.ca	37	10	74999097	74999097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_173348	exon13	c.G1630T	p.A544S	.	.	42	4	32	0	.	.
FAM161A	84140	broad.mit.edu;bcgsc.ca	37	2	62067466	62067466	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM161A	NM_032180	exon3	c.A673G	p.R225G	.	.	331	8	210	0	.	136
FAM162B	221303	bcgsc.ca	37	6	117083230	117083230	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM162B	NM_001085480	exon3	c.C300A	p.T100T	.	.	153	6	114	0	.	22
FAM186A	121006	bcgsc.ca	37	12	50724356	50724356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM186A	NM_001145475	exon7	c.G7034T	p.R2345L	.	.	40	4	46	0	.	68
FAM186A	121006	bcgsc.ca	37	12	50756943	50756943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM186A	NM_001145475	exon2	c.T397C	p.W133R	.	.	67	4	62	0	.	68
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	2698242	2698242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM193A	NM_001256667	exon17	c.G2622T	p.L874F	.	.	190	54	163	0	.	93
FAM35A	54537	broad.mit.edu	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAM35A	NM_019054	exon3	c.C719A	p.T240K	.	.	125	4	121	3	.	94
FAP	2191	bcgsc.ca	37	2	163059440	163059440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FAP	NM_004460	exon14	c.C1165A	p.Q389K	.	.	159	5	93	0	.	93
FBN1	2200	bcgsc.ca	37	15	48766500	48766500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FBN1	NM_000138	exon34	c.C4162A	p.R1388S	.	.	52	4	52	0	.	92
FBXO11	80204	bcgsc.ca	37	2	48066612	48066612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FBXO11	NM_001190274	exon3	c.T388C	p.F130L	.	.	194	6	114	1	.	659
FBXW2	26190	bcgsc.ca	37	9	123535063	123535063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FBXW2	NM_012164	exon6	c.T875C	p.I292T	.	.	67	4	43	0	.	227
FCGR1A	2209	bcgsc.ca;mdanderson.org	37	1	149761838	149761838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FCGR1A	NM_000566	exon5	c.C788A	p.A263D	.	.	203	91	165	2	.	23
FCRL6	343413	bcgsc.ca	37	1	159784055	159784055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FCRL6	NM_001004310	exon8	c.G1120A	p.V374M	.	.	94	4	70	0	.	93
FGA	2243	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155505870	155505870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FGA	NM_000508	exon6	c.G2007T	p.L669F	.	.	56	7	54	0	.	93
FGD4	121512	bcgsc.ca	37	12	32786557	32786557	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FGD4	NM_139241	exon15	c.A1836G	p.K612K	.	.	76	4	64	0	.	229
FGL1	2267	bcgsc.ca	37	8	17743026	17743026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FGL1	NM_201553	exon3	c.C38A	p.A13D	.	.	42	6	29	0	.	90
FNBP1L	54874	bcgsc.ca	37	1	93998590	93998590	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FNBP1L	NM_001164473	exon8	c.A751G	p.M251V	.	.	138	5	92	0	.	227
FOXN2	3344	ucsc.edu	37	2	48573872	48573872	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FOXN2	NM_002158	exon3	c.G519T	p.V173V	.	.	28	4	12	0	.	226
FOXO3	2309	ucsc.edu	37	6	108882978	108882978	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FOXO3	NM_001455	exon1	c.T567C	p.R189R	.	.	70	5	86	1	.	1295
FOXP4	116113	bcgsc.ca	37	6	41558038	41558038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FOXP4	NM_001012426	exon12	c.A1387G	p.N463D	.	.	49	4	60	0	.	289
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	RNA	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FRG1B	.	.	.	.	.	.	1727	85	1219	29	.	22
FRMD4B	23150	bcgsc.ca	37	3	69267504	69267504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FRMD4B	NM_015123	exon10	c.C758A	p.P253Q	.	.	145	6	109	0	.	72
FRMD7	90167	bcgsc.ca	37	X	131212441	131212441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	FRMD7	NM_194277	exon12	c.C1604A	p.P535Q	.	.	72	4	40	0	.	228
GAB3	139716	bcgsc.ca	37	X	153924260	153924260	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GAB3	NM_001081573	exon8	c.G1462A	p.G488S	.	.	55	5	46	0	.	227
GABRG2	2566	bcgsc.ca	37	5	161528256	161528256	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GABRG2	NM_198904	exon5	c.T564C	p.A188A	.	.	84	4	54	1	.	95
GALNT14	79623	bcgsc.ca	37	2	31181298	31181298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GALNT14	NM_001253826	exon5	c.G446T	p.R149L	.	.	80	4	71	0	.	93
GALNT18	374378	ucsc.edu;bcgsc.ca	37	11	11348656	11348656	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_198516	exon9	c.A1489G	p.I497V	.	.	36	4	36	0	.	.
GBP2	2634	bcgsc.ca	37	1	89578352	89578352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GBP2	NM_004120	exon8	c.A1165G	p.R389G	.	.	87	5	73	0	.	91
GDPD1	284161	bcgsc.ca	37	17	57322876	57322876	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GDPD1	NM_001165994	exon3	c.G287T	p.G96V	.	.	140	6	56	0	.	90
GFRAL	389400	bcgsc.ca	37	6	55196592	55196592	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GFRAL	NM_207410	exon2	c.T102C	p.D34D	.	.	66	5	36	0	.	154
GGA2	23062	bcgsc.ca	37	16	23498035	23498035	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GGA2	NM_015044	exon7	c.A656G	p.K219R	.	.	139	6	114	0	.	91
GH2	2689	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	61957781	61957781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GH2	NM_002059	exon5	c.A554C	p.N185T	.	.	334	34	307	1	.	93
GIT2	9815	bcgsc.ca	37	12	110405122	110405122	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GIT2	NM_001135213	exon9	c.G767T	p.R256L	.	.	115	6	75	0	.	226
GLI3	2737	bcgsc.ca	37	7	42018287	42018287	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GLI3	NM_000168	exon11	c.T1558C	p.C520R	.	.	95	4	87	0	.	1149
GLIPR1L1	256710	bcgsc.ca	37	12	75741429	75741429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GLIPR1L1	NM_152779	exon3	c.G448T	p.G150C	.	.	85	5	82	0	.	90
GLS	2744	bcgsc.ca	37	2	191789279	191789279	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GLS	NM_014905	exon11	c.A1208G	p.E403G	.	.	164	5	95	0	.	92
GLUL	2752	bcgsc.ca	37	1	182354690	182354690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GLUL	NM_001033056	exon6	c.G605T	p.W202L	.	.	166	7	107	0	.	90
GPATCH4	54865	hgsc.bcm.edu	37	1	156565049	156565049	+	Missense_Mutation	SNP	A	A	C	rs77528517	byfrequency	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPATCH4	NM_015590	exon8	c.T1084G	p.F362V	.	.	333	7	246	0	A|0.333;C|0.333;G|0.333	91
GPC3	2719	bcgsc.ca	37	X	132826523	132826523	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPC3	NM_001164619	exon5	c.1005-1G>T	.	.	.	63	4	43	0	.	847
GPHN	10243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67382766	67382766	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPHN	NM_001024218	exon6	c.G436C	p.G146R	.	.	73	20	70	1	.	228
GPNMB	10457	bcgsc.ca	37	7	23313786	23313786	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPNMB	NM_001005340	exon11	c.G1662T	p.P554P	.	.	107	5	71	0	.	580
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41555141	41555141	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GPR34	NM_001097579	exon3	c.A255G	p.K85K	.	.	105	50	49	0	.	131
GRIN2A	2903	bcgsc.ca	37	16	9857629	9857629	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GRIN2A	NM_000833	exon14	c.G3772T	p.G1258C	.	.	62	4	71	0	.	349
GRM3	2913	bcgsc.ca	37	7	86469056	86469056	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GRM3	NM_000840	exon4	c.C2226A	p.T742T	.	.	88	5	59	0	.	528
GUCA1B	2979	bcgsc.ca	37	6	42153435	42153435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GUCA1B	NM_002098	exon3	c.T458C	p.V153A	.	.	52	4	52	0	.	92
GUCY1A2	2977	bcgsc.ca	37	11	106810206	106810206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GUCY1A2	NM_000855	exon4	c.G1186T	p.G396C	.	.	54	4	30	0	.	589
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45948313	45948313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GYLTL1B	NM_152312	exon10	c.C1216T	p.R406W	.	.	34	16	32	0	.	92
GYS2	2998	bcgsc.ca	37	12	21711243	21711243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	GYS2	NM_021957	exon11	c.A1313G	p.Q438R	.	.	78	4	100	0	.	523
HAUS2	55142	bcgsc.ca	37	15	42856007	42856007	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HAUS2	NM_018097	exon5	c.T450C	p.L150L	.	.	121	6	116	0	.	90
HBS1L	10767	bcgsc.ca	37	6	135358352	135358352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HBS1L	NM_001145207	exon5	c.C1243A	p.L415M	.	.	68	5	53	0	.	92
HDAC10	83933	ucsc.edu;bcgsc.ca	37	22	50686155	50686155	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HDAC10	NM_032019	exon14	c.T1388C	p.L463P	.	.	31	4	50	0	.	226
HEATR3	55027	bcgsc.ca	37	16	50102775	50102775	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HEATR3	NM_182922	exon3	c.A396G	p.K132K	.	.	299	9	235	1	.	92
HEATR6	63897	bcgsc.ca	37	17	58128279	58128279	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HEATR6	NM_022070	exon15	c.A2349G	p.S783S	.	.	86	5	63	0	.	227
HECTD4	283450	bcgsc.ca	37	12	112620945	112620945	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001109662	exon62	c.C10503A	p.T3501T	.	.	118	7	86	0	.	.
HECW2	57520	bcgsc.ca	37	2	197086994	197086994	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HECW2	NM_020760	exon24	c.A4087G	p.N1363D	.	.	132	5	66	0	.	668
HELZ2	85441	ucsc.edu;bcgsc.ca	37	20	62196247	62196247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001037335	exon9	c.C3928A	p.P1310T	.	.	42	4	69	0	.	.
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	28465614	28465614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HERC2	NM_004667	exon37	c.C5829A	p.D1943E	.	.	23	9	18	0	.	234
HHIPL2	79802	bcgsc.ca	37	1	222721145	222721145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HHIPL2	NM_024746	exon1	c.G242T	p.R81L	.	.	83	5	57	0	.	69
HHLA2	11148	bcgsc.ca	37	3	108095371	108095371	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HHLA2	NM_007072	exon9	c.T1191C	p.C397C	.	.	55	4	51	0	.	1
HIST1H3B	8358	ucsc.edu;bcgsc.ca	37	6	26032260	26032260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HIST1H3B	NM_003537	exon1	c.A29G	p.K10R	.	.	26	4	33	0	.	92
HLA-A	3105	broad.mit.edu	37	6	29910376	29910376	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HLA-A	NM_001242758	exon1	c.G46C	p.A16P	.	.	54	10	71	1	.	92
HMCN1	83872	bcgsc.ca	37	1	186057856	186057856	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HMCN1	NM_031935	exon63	c.A9696G	p.K3232K	.	.	124	6	49	0	.	113
HMGN1	3150	bcgsc.ca	37	21	40717180	40717180	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HMGN1	NM_004965	exon5	c.A147G	p.K49K	.	.	77	5	65	0	.	658
HNRNPR	10236	bcgsc.ca	37	1	23645191	23645191	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HNRNPR	NM_001102399	exon8	c.509-1G>T	.	.	.	46	4	39	0	.	24
HOOK1	51361	broad.mit.edu;bcgsc.ca	37	1	60330894	60330894	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HOOK1	NM_015888	exon18	c.T1721C	p.L574P	.	.	220	7	116	0	.	154
HPS5	11234	bcgsc.ca	37	11	18308174	18308174	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HPS5	NM_181507	exon19	c.C2801A	p.P934Q	.	.	71	5	70	0	.	133
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33296847	33296847	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HUNK	NM_014586	exon2	c.G329A	p.R110Q	.	.	67	18	38	0	.	334
HUWE1	10075	bcgsc.ca	37	X	53586410	53586410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	HUWE1	NM_031407	exon57	c.T7820C	p.L2607P	.	.	50	4	73	0	.	280
IBTK	25998	bcgsc.ca	37	6	82904228	82904228	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IBTK	NM_015525	exon23	c.C3306T	p.T1102T	.	.	232	7	146	0	.	92
IFNAR2	3455	broad.mit.edu	37	21	34619125	34619125	+	Silent	SNP	C	C	A	rs146101901	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IFNAR2	NM_207585	exon5	c.C324A	p.T108T	.	.	97	5	90	0	C|1.000;T|0.000	90
IFT74	80173	broad.mit.edu	37	9	27009121	27009121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IFT74	NM_001099222	exon9	c.C691A	p.L231I	.	.	318	12	310	0	.	515
IFT80	57560	bcgsc.ca	37	3	160075322	160075322	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IFT80	NM_020800	exon7	c.G594T	p.S198S	.	.	306	11	202	0	.	522
IFT81	28981	bcgsc.ca	37	12	110628823	110628823	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IFT81	NM_014055	exon13	c.A1437G	p.K479K	.	.	65	4	28	0	.	91
IFT88	8100	bcgsc.ca	37	13	21264863	21264863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IFT88	NM_175605	exon27	c.T2289A	p.S763R	.	.	73	4	107	1	.	91
IGSF6	10261	bcgsc.ca	37	16	21658583	21658583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IGSF6	NM_005849	exon2	c.C298A	p.Q100K	.	.	81	4	97	0	.	68
IKBKE	9641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	206649567	206649567	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IKBKE	NM_001193322	exon6	c.C402T	p.R134R	.	.	64	38	58	0	.	1061
IL1RAPL2	26280	bcgsc.ca	37	X	104984652	104984652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IL1RAPL2	NM_017416	exon8	c.G1016T	p.R339L	.	.	107	5	88	0	.	194
IL21R	50615	ucsc.edu	37	16	27445743	27445743	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IL21R	NM_181079	exon4	c.T191C	p.L64P	.	.	32	5	44	0	.	660
IL3	3562	bcgsc.ca	37	5	131398369	131398369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IL3	NM_000588	exon5	c.C344T	p.P115L	.	.	75	4	75	0	.	92
IL7R	3575	bcgsc.ca	37	5	35876225	35876225	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IL7R	NM_002185	exon8	c.G1017A	p.R339R	.	.	50	4	38	0	.	157
INPP4B	8821	bcgsc.ca	37	4	143350346	143350346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	INPP4B	NM_003866	exon6	c.C116A	p.P39Q	.	.	180	6	158	0	.	228
INPP5A	3632	bcgsc.ca	37	10	134503894	134503894	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	INPP5A	NM_005539	exon5	c.307-2A>G	.	.	.	64	5	61	0	.	229
INTS10	55174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	19682357	19682358	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	INTS10	NM_018142	exon8	c.880_881insA	p.Y294_M295delinsX	.	.	64	27	57	0	.	91
IQCA1	79781	bcgsc.ca	37	2	237308130	237308130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IQCA1	NM_001270585	exon9	c.A1157G	p.E386G	.	.	156	8	111	0	.	23
IQUB	154865	ucsc.edu;bcgsc.ca	37	7	123101527	123101527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IQUB	NM_178827	exon11	c.C1891A	p.L631I	.	.	36	4	68	0	.	156
IRAK1BP1	134728	bcgsc.ca	37	6	79607676	79607676	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	IRAK1BP1	NM_001010844	exon3	c.G512T	p.R171L	.	.	89	5	41	0	.	90
ISLR	3671	ucsc.edu;bcgsc.ca	37	15	74468332	74468332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISLR	NM_201526	exon2	c.C1133A	p.P378Q	.	.	40	4	43	0	.	155
ISYNA1	51477	ucsc.edu;bcgsc.ca	37	19	18545774	18545774	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ISYNA1	NM_016368	exon11	c.C1626A	p.T542T	.	.	71	8	116	0	.	92
ITFG1	81533	bcgsc.ca	37	16	47192837	47192837	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ITFG1	NM_030790	exon17	c.G1726T	p.G576C	.	.	208	6	133	0	.	91
ITGAE	3682	ucsc.edu	37	17	3655165	3655165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ITGAE	NM_002208	exon15	c.G1672T	p.G558C	.	.	41	4	62	0	.	161
ITLN1	55600	bcgsc.ca	37	1	160853285	160853285	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ITLN1	NM_017625	exon3	c.C90A	p.T30T	.	.	118	7	118	0	.	96
JKAMP	51528	bcgsc.ca	37	14	59961874	59961874	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	JKAMP	NM_016475	exon4	c.G390T	p.T130T	.	.	184	7	180	0	.	67
KAL1	3730	bcgsc.ca	37	X	8507788	8507788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KAL1	NM_000216	exon10	c.A1366G	p.N456D	.	.	140	5	131	0	.	134
KALRN	8997	bcgsc.ca	37	3	124053174	124053174	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KALRN	NM_003947	exon9	c.C1473T	p.S491S	.	.	80	6	97	0	.	738
KANSL2	54934	bcgsc.ca	37	12	49065666	49065666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_017822	exon5	c.G625T	p.D209Y	.	.	74	5	56	0	.	.
KCNAB1	7881	bcgsc.ca	37	3	156175278	156175278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KCNAB1	NM_172160	exon4	c.G394T	p.G132C	.	.	120	5	92	0	.	94
KCNH3	23416	ucsc.edu	37	12	49938085	49938085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KCNH3	NM_012284	exon7	c.T1109C	p.L370P	.	.	36	4	41	0	.	90
KCNH5	27133	bcgsc.ca	37	14	63417024	63417024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KCNH5	NM_172375	exon7	c.C1196A	p.P399Q	.	.	49	4	88	0	.	98
KCNJ3	3760	bcgsc.ca	37	2	155711813	155711813	+	Silent	SNP	T	T	C	rs80085601	byfrequency	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KCNJ3	NM_002239	exon3	c.T1494C	p.D498D	.	.	119	5	72	0	T|0.998;C|0.002	92
KCTD6	200845	bcgsc.ca	37	3	58487048	58487048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KCTD6	NM_001128214	exon3	c.C403A	p.P135T	.	.	123	6	78	0	.	91
KDELC1	79070	bcgsc.ca	37	13	103441420	103441420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KDELC1	NM_024089	exon7	c.A1235G	p.K412R	.	.	114	6	85	0	.	91
KDM1A	23028	bcgsc.ca	37	1	23395160	23395160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KDM1A	NM_001009999	exon11	c.G1308T	p.L436F	.	.	108	6	66	0	.	206
KDM3B	51780	bcgsc.ca	37	5	137717257	137717257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KDM3B	NM_016604	exon6	c.A758G	p.D253G	.	.	57	4	57	0	.	542
KIAA0226	9711	bcgsc.ca	37	3	197431446	197431446	+	Missense_Mutation	SNP	C	C	A	rs115638090	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA0226	NM_014687	exon4	c.G430T	p.G144W	.	.	96	6	99	0	C|0.999;T|0.001	22
KIAA0368	23392	bcgsc.ca	37	9	114132847	114132847	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA0368	NM_001080398	exon46	c.T5376C	p.V1792V	.	.	111	5	72	0	.	68
KIAA0586	9786	bcgsc.ca	37	14	58955569	58955569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA0586	NM_001244189	exon26	c.G3917A	p.C1306Y	.	.	68	4	62	0	.	23
KIAA0930	23313	ucsc.edu;bcgsc.ca	37	22	45593691	45593691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA0930	NM_015264	exon9	c.C1169A	p.P390Q	.	.	51	5	71	0	.	90
KIAA1109	84162	bcgsc.ca	37	4	123108652	123108652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA1109	NM_015312	exon6	c.G612T	p.K204N	.	.	112	5	116	0	.	80
KIAA1279	26128	bcgsc.ca	37	10	70775721	70775721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA1279	NM_015634	exon7	c.A1415G	p.Q472R	.	.	74	4	78	0	.	91
KIAA1429	25962	bcgsc.ca	37	8	95538905	95538905	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA1429	NM_015496	exon8	c.G1567T	p.G523C	.	.	87	4	52	0	.	92
KIAA1549L	25758	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33682506	33682506	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_012194	exon19	c.G5214A	p.Q1738Q	.	.	37	11	33	0	.	.
KIAA1731	85459	bcgsc.ca	37	11	93431259	93431259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIAA1731	NM_033395	exon15	c.C3181A	p.Q1061K	.	.	73	4	52	0	.	22
KIF13A	63971	bcgsc.ca	37	6	17852250	17852250	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIF13A	NM_001105567	exon7	c.G518T	p.R173L	.	.	123	5	77	1	.	137
KIF13A	63971	bcgsc.ca	37	6	17855818	17855818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIF13A	NM_001105567	exon6	c.A344G	p.H115R	.	.	58	4	55	0	.	137
KIF23	9493	bcgsc.ca	37	15	69732782	69732782	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KIF23	NM_138555	exon17	c.C2023A	p.R675R	.	.	85	4	74	0	.	227
KLF10	7071	broad.mit.edu	37	8	103664544	103664544	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLF10	NM_005655	exon2	c.G118T	p.E40X	.	.	162	7	102	0	.	226
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51530742	51530742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLK11	NM_144947	exon1	c.A32G	p.K11R	.	.	31	14	34	0	.	650
KLKB1	3818	bcgsc.ca	37	4	187159437	187159437	+	Silent	SNP	C	C	A	rs139178458	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLKB1	NM_000892	exon6	c.C516A	p.P172P	.	.	61	4	101	0	C|1.000;T|0.000	227
KLKB1	3818	ucsc.edu;bcgsc.ca	37	4	187175845	187175845	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KLKB1	NM_000892	exon12	c.C1417A	p.Q473K	.	.	43	4	78	0	.	227
KLRC4-KLRK1	0	bcgsc.ca	37	12	10525782	10525782	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001199805	exon13	c.G582T	p.S194S	.	.	81	4	122	0	.	.
KRCC1	51315	bcgsc.ca	37	2	88327465	88327465	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRCC1	NM_016618	exon4	c.C618A	p.T206T	.	.	571	14	290	0	.	69
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46117591	46117591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP10-12	NM_198699	exon1	c.C475T	p.P159S	.	.	107	37	163	0	.	90
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	101	22	110	1	T|0.717;C|0.283	91
KRTAP5-7	440050	hgsc.bcm.edu	37	11	71238415	71238415	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	KRTAP5-7	NM_001012503	exon1	c.C69A	p.G23G	.	.	137	12	179	0	.	68
LAMA3	3909	bcgsc.ca	37	18	21416967	21416967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LAMA3	NM_001127717	exon25	c.A3007G	p.I1003V	.	.	71	4	80	0	.	100
LAMC2	3918	bcgsc.ca	37	1	183177146	183177146	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LAMC2	NM_005562	exon2	c.T210C	p.N70N	.	.	79	4	38	0	.	93
LCMT2	9836	bcgsc.ca	37	15	43620692	43620692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LCMT2	NM_014793	exon1	c.T1996C	p.F666L	.	.	65	4	62	0	.	90
LEMD3	23592	bcgsc.ca	37	12	65634799	65634799	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LEMD3	NM_014319	exon9	c.G2237T	p.R746L	.	.	90	5	62	0	.	516
LIM2	3982	bcgsc.ca	37	19	51885708	51885708	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LIM2	NM_030657	exon3	c.C415A	p.R139R	.	.	60	4	66	0	.	90
LIMCH1	22998	bcgsc.ca	37	4	41668624	41668624	+	Missense_Mutation	SNP	C	C	T	rs138567175		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LIMCH1	NM_014988	exon16	c.C2183T	p.P728L	.	.	109	5	81	0	C|1.000;T|0.000	26
LMO4	8543	ucsc.edu;bcgsc.ca	37	1	87805235	87805235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LMO4	NM_006769	exon3	c.G253T	p.G85C	.	.	57	5	51	0	.	226
LNX1	84708	bcgsc.ca	37	4	54424043	54424043	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LNX1	NM_032622	exon1	c.A90G	p.E30E	.	.	55	4	49	0	.	229
LOC440434	0	broad.mit.edu	37	17	36365147	36365147	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	1784	19	1110	1	.	.
LOC641746	0	bcgsc.ca	37	7	64043423	64043423	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	86	6	73	0	.	.
LOC643387	0	broad.mit.edu;ucsc.edu	37	2	239142231	239142231	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	97	47	87	0	.	.
LONRF2	164832	bcgsc.ca	37	2	100919506	100919506	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LONRF2	NM_198461	exon4	c.799-1G>T	.	.	.	75	4	41	0	.	154
LPIN1	23175	bcgsc.ca	37	2	11919652	11919652	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LPIN1	NM_001261428	exon8	c.G985T	p.G329C	.	.	118	5	96	0	.	156
LPIN3	64900	ucsc.edu;bcgsc.ca	37	20	39985684	39985684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LPIN3	NM_022896	exon15	c.G1808A	p.R603H	.	.	25	5	28	0	.	93
LRIT3	345193	ucsc.edu;bcgsc.ca	37	4	110791566	110791566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRIT3	NM_198506	exon4	c.T1661C	p.V554A	.	.	46	4	53	0	.	90
LRP6	4040	ucsc.edu;bcgsc.ca	37	12	12332824	12332824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRP6	NM_002336	exon7	c.C1465A	p.L489I	.	.	44	4	52	0	.	661
LRRC16A	55604	broad.mit.edu;bcgsc.ca	37	6	25492251	25492251	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC16A	NM_001173977	exon15	c.C1219A	p.R407R	.	.	186	10	133	0	.	137
LRRC16B	90668	ucsc.edu	37	14	24524954	24524954	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC16B	NM_138360	exon10	c.G726A	p.S242S	.	.	47	4	81	0	.	139
LRRC40	55631	bcgsc.ca	37	1	70641654	70641654	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC40	NM_017768	exon7	c.A816G	p.V272V	.	.	151	5	87	0	.	91
LRRC6	23639	bcgsc.ca	37	8	133622473	133622473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LRRC6	NM_012472	exon10	c.C1079A	p.P360H	.	.	71	4	42	0	.	92
LTK	4058	ucsc.edu	37	15	41798158	41798158	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LTK	NM_002344	exon12	c.A1587G	p.V529V	.	.	41	4	53	1	.	1377
LUC7L	55692	bcgsc.ca	37	16	249175	249175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LUC7L	NM_201412	exon6	c.G573T	p.E191D	.	.	47	4	37	0	.	90
LUZP1	7798	bcgsc.ca	37	1	23420033	23420033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LUZP1	NM_033631	exon4	c.G722T	p.R241L	.	.	228	6	189	0	.	90
LZIC	84328	bcgsc.ca	37	1	9994857	9994857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	LZIC	NM_032368	exon4	c.A299G	p.K100R	.	.	61	4	64	0	.	90
MAD2L1BP	9587	ucsc.edu;bcgsc.ca	37	6	43608100	43608100	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MAD2L1BP	NM_001003690	exon4	c.C751A	p.R251S	.	.	43	4	38	0	.	90
MADD	8567	bcgsc.ca	37	11	47303200	47303200	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MADD	NM_130474	exon8	c.C1365A	p.P455P	.	.	69	4	59	0	.	682
MAL2	114569	bcgsc.ca	37	8	120255674	120255674	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_052886	exon5	c.G477T	p.T159T	.	.	181	6	113	0	.	.
MANBAL	63905	bcgsc.ca	37	20	35929816	35929816	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MANBAL	NM_001003897	exon2	c.G150T	p.A50A	.	.	60	4	56	0	.	90
MANEA	79694	bcgsc.ca	37	6	96044651	96044651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MANEA	NM_024641	exon3	c.G583T	p.D195Y	.	.	81	4	68	0	.	155
MAP3K2	10746	bcgsc.ca	37	2	128093455	128093455	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MAP3K2	NM_006609	exon4	c.C255A	p.T85T	.	.	92	4	56	0	.	1403
MCF2	4168	bcgsc.ca	37	X	138729056	138729056	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MCF2	NM_001171876	exon3	c.G32T	p.R11L	.	.	134	7	78	0	.	227
MCHR1	2847	bcgsc.ca	37	22	41077128	41077128	+	Silent	SNP	G	G	T	rs142058318	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MCHR1	NM_005297	exon2	c.G465T	p.S155S	.	.	83	4	81	0	G|1.000;A|0.000	90
MDN1	23195	bcgsc.ca	37	6	90424370	90424370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MDN1	NM_014611	exon46	c.C6961A	p.P2321T	.	.	61	4	39	0	.	100
MED12	9968	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	70338632	70338632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED12	NM_005120	exon1	c.G28C	p.E10Q	.	.	72	54	90	1	.	272
MED23	9439	ucsc.edu;bcgsc.ca	37	6	131917145	131917145	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MED23	NM_015979	exon23	c.G2955T	p.P985P	.	.	36	5	37	0	.	24
MEGF11	84465	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66209210	66209210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MEGF11	NM_032445	exon17	c.C2171T	p.A724V	.	.	81	29	44	0	.	69
METAP2	10988	bcgsc.ca	37	12	95879677	95879677	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	METAP2	NM_006838	exon4	c.C348A	p.P116P	.	.	53	4	50	0	.	90
METTL17	64745	bcgsc.ca	37	14	21462759	21462759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	METTL17	NM_022734	exon8	c.C755A	p.P252H	.	.	83	6	67	0	.	94
METTL20	254013	bcgsc.ca	37	12	31815039	31815039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	METTL20	NM_173802	exon2	c.T152C	p.L51P	.	.	53	4	69	0	.	90
MFAP3L	9848	bcgsc.ca	37	4	170913445	170913445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MFAP3L	NM_021647	exon3	c.A314G	p.H105R	.	.	75	4	105	0	.	91
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39883537	39883537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MGAT3	NM_002409	exon2	c.C185A	p.P62H	.	.	47	18	60	0	.	90
MIA2	117153	bcgsc.ca	37	14	39716329	39716329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MIA2	NM_054024	exon4	c.C551A	p.P184H	.	.	110	6	72	0	.	154
MIA3	375056	bcgsc.ca	37	1	222825631	222825631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MIA3	NM_198551	exon13	c.G4043T	p.R1348L	.	.	285	7	158	0	.	98
MIOS	54468	bcgsc.ca	37	7	7612229	7612229	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MIOS	NM_019005	exon4	c.A123G	p.G41G	.	.	85	4	80	0	.	90
MKX	283078	bcgsc.ca	37	10	28023503	28023503	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MKX	NM_001242702	exon5	c.C720A	p.T240T	.	.	172	6	145	0	.	91
MMP28	79148	bcgsc.ca	37	17	34105931	34105931	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MMP28	NM_001032278	exon3	c.C340A	p.R114R	.	.	100	6	68	0	.	91
MPDZ	8777	ucsc.edu	37	9	13188826	13188826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MPDZ	NM_003829	exon17	c.C2321A	p.A774E	.	.	50	4	35	0	.	231
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66204833	66204833	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MRPL11	NM_170739	exon3	c.301delG	p.A101fs	.	.	42	12	75	0	.	90
MS4A14	84689	bcgsc.ca	37	11	60183848	60183848	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MS4A14	NM_001261828	exon6	c.A1506G	p.K502K	.	.	57	4	44	0	.	90
MS4A2	2206	bcgsc.ca	37	11	59861451	59861451	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MS4A2	NM_000139	exon6	c.G552T	p.M184I	.	.	86	5	92	0	.	91
MSANTD3-TMEFF1	100526694	bcgsc.ca	37	9	103271353	103271353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001198812	exon3	c.A595G	p.R199G	.	.	78	5	76	0	.	.
MSRB1	51734	ucsc.edu;bcgsc.ca	37	16	1991321	1991321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	26	4	30	0	.	.
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9028261	9028261	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MUC16	NM_024690	exon11	c.C36531T	p.G12177G	.	.	66	15	73	1	.	566
MUC5B	727897	ucsc.edu	37	11	1251781	1251781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_002458	exon12	c.A1421G	p.N474S	.	.	39	4	55	0	.	.
MVP	9961	bcgsc.ca	37	16	29845071	29845071	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MVP	NM_017458	exon4	c.G339T	p.Q113H	.	.	70	4	68	0	.	93
MYCBP2	23077	bcgsc.ca	37	13	77669633	77669633	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYCBP2	NM_015057	exon58	c.C10059A	p.S3353S	.	.	79	4	63	0	.	236
MYCBP2	23077	bcgsc.ca	37	13	77725065	77725065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYCBP2	NM_015057	exon47	c.C6935A	p.P2312H	.	.	72	4	51	0	.	236
MYH15	22989	bcgsc.ca	37	3	108118109	108118109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYH15	NM_014981	exon35	c.A4802G	p.K1601R	.	.	114	5	71	0	.	73
MYO10	4651	ucsc.edu;bcgsc.ca	37	5	16783575	16783575	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO10	NM_012334	exon5	c.T471C	p.G157G	.	.	72	6	67	0	.	3
MYO16	23026	bcgsc.ca	37	13	109562497	109562497	+	Silent	SNP	C	C	A	rs140988256	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO16	NM_001198950	exon16	c.C1924A	p.R642R	.	.	106	6	58	0	C|1.000;T|0.000	142
MYO18B	84700	ucsc.edu	37	22	26351184	26351184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO18B	NM_032608	exon39	c.G6010T	p.G2004W	.	.	39	4	35	0	.	142
MYO1A	4640	bcgsc.ca	37	12	57442017	57442017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO1A	NM_005379	exon2	c.C91A	p.R31S	.	.	55	4	53	0	.	231
MYO9B	4650	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	17317927	17317927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	MYO9B	NM_001130065	exon35	c.C5498T	p.A1833V	.	.	59	16	74	0	.	67
N4BP2L1	90634	bcgsc.ca	37	13	32978397	32978397	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	N4BP2L1,NS,carcinoma,0	N4BP2L1	NM_001079691	exon4	c.C408A	p.T136T	.	.	116	6	82	0	.	91
NAA16	79612	bcgsc.ca	37	13	41929333	41929333	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAA16	NM_001110798	exon10	c.T1068C	p.C356C	.	.	60	4	53	0	.	90
NALCN	259232	bcgsc.ca	37	13	101747987	101747987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NALCN	NM_052867	exon28	c.G3207T	p.K1069N	.	.	48	4	38	0	.	167
NAPB	63908	bcgsc.ca	37	20	23370609	23370609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAPB	NM_022080	exon7	c.C535A	p.Q179K	.	.	157	8	103	0	.	91
NAT14	57106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	55997777	55997777	+	Silent	SNP	C	C	T	rs201053971		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAT14	NM_020378	exon3	c.C75T	p.A25A	.	.	21	11	15	0	C|0.999;T|0.000	91
NAV3	89795	bcgsc.ca	37	12	78225359	78225359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NAV3	NM_014903	exon1	c.A118G	p.R40G	.	.	98	4	82	0	.	279
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35756573	35756573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NBEA	NM_015678	exon29	c.G4739A	p.R1580H	.	.	184	62	76	0	.	144
NCF2	4688	bcgsc.ca	37	1	183556091	183556091	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NCF2	NM_001127651	exon3	c.C196A	p.R66R	.	.	79	5	73	0	.	93
NCOA1	8648	bcgsc.ca	37	2	24985567	24985567	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NCOA1	NM_147223	exon20	c.C4077A	p.P1359P	.	.	108	5	75	0	.	228
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	4112	4112	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361390	exon1	c.T806C	p.L269P	.	.	474	41	200	0	.	.
ND4	0	broad.mit.edu;bcgsc.ca	37	MT	11196	11196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361381	exon1	c.G437A	p.G146D	.	.	617	16	248	0	.	.
ND6	0	broad.mit.edu;bcgsc.ca	37	MT	14423	14423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	ENST00000361681	exon1	c.C251T	p.S84L	.	.	710	223	277	0	.	.
NDUFS8	4728	bcgsc.ca	37	11	67800612	67800612	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NDUFS8	NM_002496	exon5	c.A234G	p.E78E	.	.	53	6	59	0	.	91
NEGR1	257194	bcgsc.ca	37	1	72400794	72400794	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NEGR1	NM_173808	exon2	c.C377A	p.P126H	.	.	59	5	71	1	.	92
NEK10	152110	bcgsc.ca	37	3	27326103	27326103	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NEK10	NM_199347	exon23	c.A2004G	p.K668K	.	.	71	5	41	0	.	695
NFAT5	10725	bcgsc.ca	37	16	69703963	69703963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NFAT5	NM_001113178	exon8	c.G1453T	p.G485C	.	.	149	6	111	0	.	90
NFAT5	10725	bcgsc.ca	37	16	69726552	69726552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NFAT5	NM_138713	exon13	c.G2824A	p.G942R	.	.	59	4	58	0	.	90
NIPA2	81614	bcgsc.ca	37	15	23006690	23006690	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NIPA2	NM_001184889	exon10	c.A614G	p.E205G	.	.	46	4	49	0	.	91
NIPAL3	57185	bcgsc.ca	37	1	24786997	24786997	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NIPAL3	NM_020448	exon10	c.G889T	p.G297W	.	.	138	6	120	0	.	90
NKAPL	222698	bcgsc.ca	37	6	28228221	28228221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NKAPL	NM_001007531	exon1	c.A1072G	p.N358D	.	.	64	4	51	0	.	70
NMBR	4829	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	142409410	142409410	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NMBR	NM_002511	exon1	c.T386G	p.V129G	.	.	23	7	20	0	.	946
NOP14-AS1	317648	ucsc.edu	37	4	2940485	2940485	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	102	1	80	0	.	.
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917336	26917336	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NOVA1	NM_002515	exon5	c.T1353A	p.T451T	.	.	263	96	232	0	.	229
NOXRED1	122945	bcgsc.ca	37	14	77873913	77873913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001113475	exon3	c.T425C	p.L142P	.	.	77	5	47	0	.	.
NPC1L1	29881	ucsc.edu;bcgsc.ca	37	7	44575878	44575878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NPC1L1	NM_001101648	exon4	c.T1831C	p.F611L	.	.	40	4	51	0	.	94
NR0B1	190	bcgsc.ca	37	X	30322812	30322812	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NR0B1	NM_000475	exon2	c.C1297A	p.L433I	.	.	55	4	40	0	.	227
NR2C2	7182	bcgsc.ca	37	3	15080734	15080734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NR2C2	NM_003298	exon14	c.G1673T	p.R558L	.	.	87	4	70	0	.	226
NRAP	4892	ucsc.edu;bcgsc.ca	37	10	115385895	115385895	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NRAP	NM_001261463	exon21	c.C2155A	p.R719R	.	.	42	4	39	0	.	522
NRDE2	55051	bcgsc.ca	37	14	90770689	90770689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_017970	exon5	c.C595A	p.P199T	.	.	51	4	55	0	.	.
NUP133	55746	bcgsc.ca	37	1	229611438	229611438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NUP133	NM_018230	exon14	c.C1798A	p.Q600K	.	.	112	6	71	0	.	271
NUP188	23511	bcgsc.ca	37	9	131747293	131747293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NUP188	NM_015354	exon20	c.G2076T	p.K692N	.	.	249	7	245	1	.	207
NXPE4	54827	bcgsc.ca	37	11	114450928	114450928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001077639	exon5	c.G1025T	p.R342I	.	.	135	6	110	0	.	.
NYNRIN	57523	bcgsc.ca	37	14	24878571	24878571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	NYNRIN	NM_025081	exon4	c.T1571C	p.V524A	.	.	39	4	52	0	.	3
OBSCN	84033	bcgsc.ca	37	1	228494260	228494260	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OBSCN	NM_001271223	exon55	c.G14718T	p.Q4906H	.	.	59	4	50	0	.	403
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	128722192	128722192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OCRL	NM_000276	exon21	c.C2293T	p.L765F	.	.	35	28	27	0	.	206
OCRL	4952	ucsc.edu	37	X	128691341	128691341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OCRL	NM_000276	exon5	c.A278G	p.E93G	.	.	41	4	26	0	.	206
OFD1	8481	bcgsc.ca	37	X	13769462	13769462	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OFD1	NM_003611	exon10	c.C1030A	p.R344R	.	.	160	7	105	0	.	108
OLAH	55301	bcgsc.ca	37	10	15107646	15107646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OLAH	NM_018324	exon7	c.C625A	p.L209I	.	.	162	7	120	0	.	68
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	48347263	48347263	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR4C3	NM_001004702	exon1	c.G771A	p.G257G	.	.	206	21	183	0	.	69
OR4M1	441670	broad.mit.edu	37	14	20249105	20249105	+	Silent	SNP	G	G	T	rs146001200	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR4M1	NM_001005500	exon1	c.G624T	p.V208V	.	.	1146	13	819	2	G|0.990;C|0.010	68
OR5B17	219965	ucsc.edu	37	11	58126007	58126007	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR5B17	NM_001005489	exon1	c.A536G	p.K179R	.	.	41	4	40	0	.	71
OR5I1	10798	bcgsc.ca;mdanderson.org	37	11	55703216	55703216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR5I1	NM_006637	exon1	c.T661C	p.F221L	.	.	52	26	48	2	.	69
OR5K3	403277	bcgsc.ca	37	3	98109765	98109765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OR5K3	NM_001005516	exon1	c.T256C	p.F86L	.	.	149	6	132	0	.	68
OSBP	5007	bcgsc.ca	37	11	59345622	59345622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBP	NM_002556	exon12	c.C2060A	p.P687Q	.	.	48	6	69	0	.	267
OSBP	5007	bcgsc.ca	37	11	59377999	59377999	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBP	NM_002556	exon2	c.C426A	p.T142T	.	.	95	6	106	1	.	267
OSBPL1A	114876	bcgsc.ca	37	18	21747371	21747371	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBPL1A	NM_080597	exon25	c.G2457T	p.P819P	.	.	96	6	80	0	.	94
OSBPL2	9885	ucsc.edu;bcgsc.ca	37	20	60847187	60847187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OSBPL2	NM_144498	exon5	c.T265C	p.S89P	.	.	42	5	33	0	.	69
OTOGL	283310	bcgsc.ca	37	12	80714317	80714317	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_173591	exon33	c.A3891G	p.R1297R	.	.	89	6	64	0	.	.
OTX1	5013	ucsc.edu;bcgsc.ca	37	2	63281316	63281316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OTX1	NM_014562	exon4	c.C232T	p.P78S	.	.	33	4	51	0	.	70
OXGR1	27199	bcgsc.ca	37	13	97639447	97639447	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	OXGR1	NM_080818	exon4	c.G567T	p.S189S	.	.	53	4	75	0	.	70
PALB2	79728	bcgsc.ca	37	16	23635330	23635330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PALB2	NM_024675	exon8	c.G2834T	p.R945M	.	.	104	4	94	0	.	1351
PARP12	64761	bcgsc.ca	37	7	139728413	139728413	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PARP12	NM_022750	exon9	c.G1497T	p.Q499H	.	.	54	5	47	0	.	525
PATE1	160065	bcgsc.ca	37	11	125618597	125618597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PATE1	NM_138294	exon5	c.G350T	p.R117M	.	.	122	5	63	0	.	90
PBX2	5089	bcgsc.ca	37	6	32156517	32156517	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PBX2	NM_002586	exon2	c.A278G	p.E93G	.	.	94	7	113	0	.	91
PCDH15	65217	bcgsc.ca	37	10	55973742	55973742	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCDH15	NM_001142763	exon11	c.A1067G	p.E356G	.	.	66	6	59	0	.	193
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140563257	140563257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCDHB16	NM_020957	exon1	c.T1123A	p.S375T	.	.	59	26	77	0	.	92
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	17208109	17208109	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PCSK2	NM_002594	exon1	c.C159T	p.H53H	.	.	86	33	80	0	.	157
PDE6C	5146	bcgsc.ca	37	10	95380456	95380456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDE6C	NM_006204	exon2	c.C548T	p.P183L	.	.	63	5	53	0	.	94
PDE8B	8622	ucsc.edu	37	5	76646969	76646969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDE8B	NM_001029852	exon9	c.G1097A	p.G366D	.	.	45	4	36	0	.	90
PDGFRL	5157	bcgsc.ca	37	8	17478709	17478709	+	Missense_Mutation	SNP	C	C	T	rs190976134		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDGFRL	NM_006207	exon4	c.C503T	p.T168I	.	.	64	4	43	0	C|0.999;T|0.000	115
PDLIM3	27295	bcgsc.ca	37	4	186435983	186435983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDLIM3	NM_001114107	exon4	c.A392G	p.N131S	.	.	70	4	101	0	.	92
PDXDC1	23042	broad.mit.edu	37	16	15122808	15122808	+	Silent	SNP	C	C	T	rs141247176		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDXDC1	NM_015027	exon15	c.C1278T	p.D426D	.	.	29	4	32	0	C|1.000;T|0.000	91
PDZRN4	29951	ucsc.edu	37	12	41966681	41966681	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PDZRN4	NM_001164595	exon10	c.G2100A	p.W700X	.	.	28	4	25	0	.	296
PGAP2	27315	bcgsc.ca	37	11	3832638	3832638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGAP2	NM_001256236	exon3	c.C320T	p.T107M	.	.	62	4	55	0	.	90
PGBD1	84547	bcgsc.ca	37	6	28268710	28268710	+	Missense_Mutation	SNP	C	C	A	rs150861226	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGBD1	NM_001184743	exon7	c.C1079A	p.S360Y	.	.	76	4	65	0	C|1.000;T|0.000	94
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28269056	28269056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PGBD1	NM_001184743	exon7	c.G1425T	p.R475S	.	.	129	54	94	0	.	94
PGM5P2	595135	broad.mit.edu	37	9	69082128	69082128	+	RNA	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	102	7	68	0	.	.
PHF16	9767	ucsc.edu	37	X	46913859	46913859	+	Silent	SNP	G	G	T	rs140782937	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PHF16	NM_001077445	exon9	c.G1272T	p.T424T	.	.	48	5	25	0	G|1.000;A|0.000	130
PHF3	23469	bcgsc.ca	37	6	64394980	64394980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PHF3	NM_015153	exon3	c.G1357T	p.A453S	.	.	97	4	70	0	.	229
PHLPP2	23035	bcgsc.ca	37	16	71713329	71713329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PHLPP2	NM_015020	exon6	c.T1000C	p.F334L	.	.	67	4	69	0	.	91
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	204438107	204438107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PIK3C2B	NM_002646	exon3	c.C824T	p.A275V	.	.	67	22	51	0	.	1310
PIP5K1B	8395	bcgsc.ca	37	9	71509515	71509515	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PIP5K1B	NM_003558	exon8	c.A732G	p.T244T	.	.	98	5	87	0	.	240
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38528998	38528998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLA2G6	NM_003560	exon7	c.G917A	p.R306Q	.	.	39	17	57	0	.	91
PLCE1	51196	bcgsc.ca	37	10	96012210	96012210	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLCE1	NM_016341	exon9	c.C3234A	p.T1078T	.	.	63	5	49	0	.	229
PLEK	5341	bcgsc.ca	37	2	68609739	68609739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEK	NM_002664	exon4	c.A446G	p.K149R	.	.	71	4	73	0	.	91
PLEKHA5	54477	bcgsc.ca	37	12	19418734	19418734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHA5	NM_001143821	exon8	c.A661G	p.I221V	.	.	103	4	134	1	.	227
PLEKHG3	26030	ucsc.edu;bcgsc.ca	37	14	65208684	65208684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHG3	NM_015549	exon14	c.A2281G	p.I761V	.	.	27	4	35	0	.	91
PLEKHG5	57449	bcgsc.ca	37	1	6528282	6528282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHG5	NM_001265592	exon21	c.C2851A	p.H951N	.	.	125	6	224	0	.	652
PLEKHM2	23207	ucsc.edu	37	1	16059111	16059111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLEKHM2	NM_015164	exon19	c.T2810C	p.F937S	.	.	46	6	51	0	.	23
PLOD2	5352	bcgsc.ca	37	3	145790433	145790433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLOD2	NM_182943	exon17	c.G1763T	p.W588L	.	.	95	4	67	0	.	92
PLS3	5358	bcgsc.ca	37	X	114871231	114871231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PLS3	NM_005032	exon8	c.A832G	p.N278D	.	.	49	5	31	0	.	193
POC5	134359	bcgsc.ca	37	5	75001597	75001597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POC5	NM_001099271	exon4	c.T239C	p.V80A	.	.	61	5	32	0	.	45
POF1B	79983	bcgsc.ca	37	X	84561267	84561267	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POF1B	NM_024921	exon12	c.T1237C	p.S413P	.	.	106	6	66	0	.	130
POGZ	23126	broad.mit.edu	37	1	151378719	151378719	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POGZ	NM_015100	exon19	c.C2792A	p.P931Q	.	.	226	6	187	0	.	93
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57860856	57860856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR2B	NM_000938	exon5	c.A400G	p.K134E	.	.	46	29	54	0	.	92
POLR2C	5432	bcgsc.ca	37	16	57505001	57505001	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR2C	NM_032940	exon9	c.G798T	p.E266D	.	.	62	4	46	0	.	90
POLR3K	51728	bcgsc.ca	37	16	101604	101604	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POLR3K	NM_016310	exon2	c.T153C	p.D51D	.	.	48	4	52	0	.	90
POMP	51371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	29242666	29242666	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POMP	NM_015932	exon4	c.A219G	p.L73L	.	.	75	19	68	0	.	90
POTEH	23784	broad.mit.edu	37	22	16279277	16279277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	POTEH	NM_001136213	exon4	c.G946T	p.G316C	.	.	1367	14	1010	0	.	1
PPARA	5465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46615711	46615711	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPARA	NM_001001928	exon6	c.A511C	p.I171L	.	.	43	22	25	0	.	611
PPIEL	728448	bcgsc.ca	37	1	40011437	40011437	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	72	4	61	0	.	.
PPL	5493	ucsc.edu;bcgsc.ca	37	16	4943555	4943555	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPL	NM_002705	exon13	c.C1479A	p.T493T	.	.	48	4	70	0	.	95
PPP1R13B	23368	bcgsc.ca	37	14	104220482	104220482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPP1R13B	NM_015316	exon6	c.C556A	p.Q186K	.	.	316	10	225	0	.	227
PPP6R3	55291	bcgsc.ca	37	11	68305256	68305256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PPP6R3	NM_001164162	exon3	c.C124A	p.R42S	.	.	152	6	96	0	.	91
PRH1-PRR4	0	ucsc.edu	37	12	11199672	11199672	+	RNA	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	40	4	37	0	.	.
PRKCSH	5589	bcgsc.ca	37	19	11548906	11548906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PRKCSH	NM_001001329	exon5	c.A311G	p.D104G	.	.	80	4	80	0	.	90
PRKD1	5587	bcgsc.ca	37	14	30135361	30135361	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PRKD1	NM_002742	exon3	c.T457C	p.S153P	.	.	70	4	49	0	.	1534
PRKG2	5593	bcgsc.ca	37	4	82058553	82058553	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PRKG2	NM_006259	exon12	c.G1628T	p.R543M	.	.	72	5	75	0	.	524
PRPH2	5961	bcgsc.ca	37	6	42689558	42689558	+	Missense_Mutation	SNP	C	C	A	rs61755793	bycluster;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PRPH2	NM_000322	exon1	c.G515T	p.R172L	.	.	96	6	83	0	.	94
PRRC2C	23215	bcgsc.ca	37	1	171509317	171509317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_015172	exon16	c.G2706T	p.K902N	.	.	96	5	57	0	.	.
PSMD14	10213	bcgsc.ca	37	2	162251644	162251644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PSMD14	NM_005805	exon10	c.A701G	p.Y234C	.	.	262	7	133	0	.	433
PSRC1	84722	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	109824628	109824628	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PSRC1	NM_001032291	exon4	c.G132T	p.R44R	.	.	22	8	31	0	.	90
PTER	9317	bcgsc.ca	37	10	16528516	16528516	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTER	NM_001001484	exon4	c.A598T	p.I200F	.	.	58	4	53	0	.	92
PTP4A1	7803	bcgsc.ca	37	6	64288855	64288855	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTP4A1	NM_003463	exon4	c.G251T	p.W84L	.	.	66	4	30	0	.	226
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	112145782	112145782	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPN3	NM_002829	exon23	c.2303delG	p.G768fs	.	.	55	18	60	0	.	229
PTPRC	5788	bcgsc.ca	37	1	198697515	198697515	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPRC	NM_002838	exon16	c.G1767T	p.V589V	.	.	83	4	49	0	.	295
PTPRE	5791	broad.mit.edu;bcgsc.ca	37	10	129871633	129871633	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPRE	NM_006504	exon17	c.C1497A	p.T499T	.	.	79	6	92	0	.	227
PTPRZ1	5803	bcgsc.ca	37	7	121652915	121652915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	PTPRZ1	NM_002851	exon12	c.T3815C	p.V1272A	.	.	87	4	64	0	.	699
RAB11A	8766	bcgsc.ca	37	15	66170132	66170132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAB11A	NM_004663	exon3	c.T269C	p.V90A	.	.	95	5	76	0	.	227
RAB27A	5873	bcgsc.ca	37	15	55527078	55527078	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAB27A	NM_183235	exon3	c.G55T	p.G19C	.	.	84	5	81	0	.	228
RAB34	83871	ucsc.edu	37	17	27045209	27045209	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAB34	NM_001142624	exon1	c.T77C	p.L26P	.	.	48	6	36	0	.	227
RAB41	347517	bcgsc.ca	37	X	69504475	69504475	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAB41	NM_001032726	exon8	c.C648A	p.G216G	.	.	50	5	45	0	.	229
RAC2	5880	ucsc.edu	37	22	37637639	37637639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAC2	NM_002872	exon2	c.A95G	p.Y32C	.	.	35	4	42	0	.	723
RAET1K	646024	bcgsc.ca	37	6	150322754	150322754	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	66	5	108	0	.	.
RALGAPB	57148	bcgsc.ca	37	20	37203537	37203537	+	Missense_Mutation	SNP	G	G	T	rs201071715	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RALGAPB	NM_020336	exon30	c.G4412T	p.R1471L	.	.	76	5	45	0	G|1.000;A|0.000	92
RALGPS2	55103	broad.mit.edu;bcgsc.ca	37	1	178866879	178866879	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RALGPS2	NM_152663	exon17	c.C1512A	p.T504T	.	.	197	10	118	0	.	226
RAP1GDS1	5910	bcgsc.ca	37	4	99264294	99264294	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAP1GDS1	NM_001100426	exon3	c.G120T	p.T40T	.	.	86	5	83	0	.	660
RAP1GDS1	5910	bcgsc.ca	37	4	99338601	99338601	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RAP1GDS1	NM_001100426	exon9	c.C994A	p.Q332K	.	.	83	4	89	1	.	660
RARS	5917	bcgsc.ca	37	5	167945051	167945051	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RARS	NM_002887	exon14	c.G1857T	p.E619D	.	.	72	4	57	0	.	93
RBBP5	5929	bcgsc.ca	37	1	205069381	205069381	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBBP5	NM_005057	exon7	c.G651T	p.T217T	.	.	117	6	75	0	.	226
RBBP6	5930	bcgsc.ca	37	16	24583695	24583695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBBP6	NM_006910	exon18	c.T5308C	p.S1770P	.	.	98	6	72	1	.	230
RBFOX2	23543	bcgsc.ca	37	22	36157476	36157476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBFOX2	NM_001082578	exon8	c.C857A	p.P286Q	.	.	145	5	106	0	.	90
RBM20	282996	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	112572161	112572161	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001134363	exon9	c.G2006A	p.W669X	.	.	20	5	21	0	.	.
RBM22	55696	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150072842	150072842	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBM22	NM_018047	exon9	c.A939G	p.K313K	.	.	29	6	49	0	.	226
RBM6	10180	bcgsc.ca	37	3	50097172	50097172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBM6	NM_005777	exon11	c.A2221G	p.K741E	.	.	60	4	71	0	.	280
RBPMS	11030	bcgsc.ca	37	8	30332357	30332357	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RBPMS	NM_006867	exon2	c.T129C	p.L43L	.	.	87	4	60	0	.	91
RCN2	5955	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77241537	77241537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RCN2	NM_001271837	exon8	c.G982T	p.D328Y	.	.	37	9	50	0	.	90
REL	5966	broad.mit.edu	37	2	61128165	61128165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	REL	NM_002908	exon4	c.A341G	p.E114G	.	.	387	7	192	0	.	1272
RHOBTB2	23221	ucsc.edu	37	8	22861977	22861977	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RHOBTB2	NM_001160036	exon4	c.A96G	p.P32P	.	.	45	4	38	0	.	416
RICTOR	253260	bcgsc.ca	37	5	38966806	38966806	+	Silent	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RICTOR	NM_152756	exon15	c.A1236T	p.I412I	.	.	118	5	72	0	.	849
RLTPR	146206	bcgsc.ca	37	16	67686214	67686214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RLTPR	NM_001013838	exon27	c.C2789A	p.P930H	.	.	16	4	25	0	.	67
RMND5A	64795	bcgsc.ca	37	2	86979021	86979021	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RMND5A	NM_022780	exon3	c.T288C	p.N96N	.	.	72	4	49	0	.	92
RNASE1	6035	bcgsc.ca	37	14	21269852	21269852	+	Silent	SNP	G	G	T	rs145424082	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RNASE1	NM_198235	exon3	c.C376A	p.R126R	.	.	117	5	105	0	G|0.999;A|0.001	90
RNF111	54778	bcgsc.ca	37	15	59383332	59383332	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RNF111	NM_001270528	exon12	c.A2745G	p.T915T	.	.	126	6	109	0	.	92
RNF123	63891	bcgsc.ca	37	3	49758698	49758698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RNF123	NM_022064	exon39	c.A3905G	p.E1302G	.	.	91	5	87	1	.	584
RNF144B	255488	ucsc.edu	37	6	18427909	18427909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RNF144B	NM_182757	exon3	c.A263G	p.E88G	.	.	34	4	19	0	.	226
RNLS	55328	bcgsc.ca	37	10	90074224	90074224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RNLS	NM_018363	exon6	c.A875G	p.Q292R	.	.	215	9	123	1	.	91
ROBO2	6092	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77626718	77626718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ROBO2	NM_002942	exon15	c.G2281T	p.D761Y	.	.	133	47	84	1	.	328
ROCK1	6093	bcgsc.ca	37	18	18571156	18571156	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ROCK1	NM_005406	exon18	c.A2124G	p.A708A	.	.	252	7	181	0	.	1026
RORA	6095	bcgsc.ca	37	15	60792114	60792114	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RORA	NM_134260	exon11	c.C1483A	p.R495R	.	.	222	7	174	0	.	290
RP1L1	94137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10470139	10470139	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RP1L1	NM_178857	exon4	c.G1469T	p.G490V	.	.	36	11	25	0	.	139
RPGRIP1L	23322	bcgsc.ca	37	16	53720384	53720384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RPGRIP1L	NM_001127897	exon6	c.C737A	p.S246Y	.	.	81	4	49	0	.	91
RPP30	10556	bcgsc.ca	37	10	92645658	92645658	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RPP30	NM_006413	exon6	c.G432T	p.V144V	.	.	124	5	76	0	.	226
RRP12	23223	bcgsc.ca	37	10	99126540	99126540	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RRP12	NM_015179	exon27	c.G3174A	p.E1058E	.	.	34	4	45	0	.	92
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254616	55254616	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A619G	p.M207V	.	.	50	16	22	0	.	155
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55254618	55254618	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RTN4	NM_020532	exon3	c.A617C	p.N206T	.	.	49	17	21	0	.	155
RUNDC3A	10900	bcgsc.ca	37	17	42392157	42392157	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001144825	exon5	c.C513A	p.T171T	.	.	54	4	47	0	.	.
RYR3	6263	bcgsc.ca	37	15	33855045	33855045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	RYR3	NM_001243996	exon11	c.A980G	p.K327R	.	.	58	5	42	0	.	520
SAMHD1	25939	bcgsc.ca	37	20	35547878	35547878	+	Silent	SNP	A	A	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SAMHD1	NM_015474	exon7	c.T741A	p.S247S	.	.	95	4	51	0	.	90
SBF1P1	100133234	ucsc.edu	37	8	56365774	56365774	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	38	4	23	0	.	.
SBF2	81846	bcgsc.ca	37	11	10052673	10052673	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SBF2	NM_030962	exon4	c.T324C	p.G108G	.	.	86	4	45	0	.	93
SBSN	374897	bcgsc.ca	37	19	36018799	36018799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SBSN	NM_001166034	exon1	c.G385A	p.E129K	.	.	52	4	71	0	.	91
SCAF4	57466	bcgsc.ca	37	21	33073434	33073434	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SCAF4	NM_020706	exon7	c.T651C	p.P217P	.	.	78	4	77	0	.	90
SCNM1	79005	bcgsc.ca	37	1	151140643	151140643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SCNM1	NM_024041	exon6	c.T422C	p.V141A	.	.	70	5	48	0	.	94
SDK2	54549	bcgsc.ca	37	17	71344805	71344805	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SDK2	NM_001144952	exon44	c.A6098G	p.Y2033C	.	.	52	5	63	0	.	24
SEC14L1	6397	bcgsc.ca	37	17	75187394	75187394	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEC14L1	NM_001204408	exon7	c.C345A	p.T115T	.	.	81	4	49	0	.	92
SEC14L4	284904	ucsc.edu	37	22	30891299	30891299	+	Missense_Mutation	SNP	C	C	A	rs142968608	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEC14L4	NM_001161368	exon5	c.G365T	p.R122L	.	.	39	5	53	1	C|0.999;T|0.001	91
SEMA3E	9723	bcgsc.ca	37	7	83032004	83032004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEMA3E	NM_012431	exon10	c.C1087T	p.P363S	.	.	65	4	35	0	.	93
SEMA3E	9723	bcgsc.ca	37	7	83047761	83047761	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEMA3E	NM_012431	exon5	c.A495G	p.R165R	.	.	71	4	54	0	.	93
SEPT4	5414	broad.mit.edu;bcgsc.ca	37	17	56599413	56599413	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SEPT4	NM_001256782	exon7	c.C757A	p.R253R	.	.	174	9	121	0	.	68
SF3B3	23450	bcgsc.ca	37	16	70602978	70602978	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SF3B3	NM_012426	exon23	c.A3198G	p.V1066V	.	.	25	4	31	0	.	91
SFTPD	6441	bcgsc.ca	37	10	81701762	81701762	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SFTPD	NM_003019	exon5	c.A498G	p.G166G	.	.	29	4	29	0	.	91
SGTB	54557	bcgsc.ca	37	5	65000171	65000171	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SGTB	NM_019072	exon5	c.T309C	p.A103A	.	.	99	5	83	0	.	90
SHISA6	388336	bcgsc.ca	37	17	11461436	11461436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SHISA6	NM_207386	exon6	c.C1471A	p.R491S	.	.	12	3	37	1	.	67
SIM2	6493	bcgsc.ca	37	21	38072159	38072159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SIM2	NM_005069	exon1	c.A113G	p.D38G	.	.	61	4	60	0	.	90
SIN3A	25942	ucsc.edu;bcgsc.ca	37	15	75694204	75694204	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SIN3A	NM_001145358	exon10	c.T1515C	p.S505S	.	.	32	4	40	0	.	230
SLAMF1	6504	bcgsc.ca	37	1	160606991	160606991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLAMF1	NM_003037	exon2	c.G405T	p.L135F	.	.	92	5	70	0	.	154
SLC10A1	6554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70252897	70252897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC10A1	NM_003049	exon2	c.T484C	p.S162P	.	.	76	36	70	0	.	91
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48595052	48595052	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC12A1	NM_001184832	exon27	c.T3270C	p.N1090N	.	.	89	31	66	0	.	24
SLC16A4	9122	bcgsc.ca	37	1	110923644	110923644	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC16A4	NM_004696	exon5	c.A486G	p.A162A	.	.	92	4	72	0	.	93
SLC18B1	116843	bcgsc.ca	37	6	133108702	133108702	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_052831	exon5	c.A372G	p.P124P	.	.	100	5	73	0	.	.
SLC19A3	80704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228563990	228563990	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC19A3	NM_025243	exon3	c.G441T	p.T147T	.	.	43	9	31	0	.	92
SLC22A2	6582	ucsc.edu	37	6	160645782	160645782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC22A2	NM_003058	exon10	c.G1556T	p.G519V	.	.	36	4	21	0	.	154
SLC25A3	5250	broad.mit.edu	37	12	98992451	98992451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC25A3	NM_005888	exon5	c.C614A	p.P205H	.	.	78	5	80	0	.	90
SLC25A3	5250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	98991725	98991725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC25A3	NM_005888	exon4	c.C374T	p.P125L	.	.	253	90	246	3	.	90
SLC2A2	6514	bcgsc.ca	37	3	170732472	170732472	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC2A2	NM_000340	exon3	c.C157A	p.R53R	.	.	138	5	129	0	.	515
SLC30A6	55676	broad.mit.edu	37	2	32422794	32422794	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC30A6	NM_001193513	exon11	c.G684T	p.P228P	.	.	484	9	269	0	.	90
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	42065035	42065035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC30A9	NM_006345	exon11	c.C929T	p.S310L	.	.	411	17	246	0	.	91
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139947621	139947621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC35A4	NM_080670	exon3	c.C867A	p.V289V	.	.	61	23	52	0	.	90
SLC35B4	84912	bcgsc.ca	37	7	133989607	133989607	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC35B4	NM_032826	exon5	c.295-1G>T	.	.	.	57	4	41	0	.	91
SLC35G5	83650	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	11189305	11189305	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_054028	exon1	c.G690A	p.G230G	.	.	55	22	60	0	.	.
SLC38A2	54407	bcgsc.ca	37	12	46758232	46758232	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC38A2	NM_018976	exon10	c.G813A	p.L271L	.	.	88	4	63	0	.	226
SLC38A6	145389	bcgsc.ca	37	14	61451478	61451478	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC38A6	NM_153811	exon3	c.T267C	p.A89A	.	.	109	5	124	0	.	92
SLC38A6	145389	bcgsc.ca	37	14	61518555	61518555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC38A6	NM_153811	exon14	c.G1101T	p.W367C	.	.	121	6	114	0	.	92
SLC39A10	57181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196593015	196593015	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC39A10	NM_020342	exon9	c.C2279A	p.T760K	.	.	315	151	162	0	.	92
SLC39A2	29986	bcgsc.ca	37	14	21468319	21468319	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC39A2	NM_014579	exon3	c.A291G	p.S97S	.	.	84	5	54	0	.	92
SLC45A1	50651	bcgsc.ca	37	1	8385397	8385397	+	Missense_Mutation	SNP	G	G	T	rs151227323	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC45A1	NM_001080397	exon2	c.G437T	p.R146L	.	.	247	8	248	0	G|1.000;A|0.000	494
SLC45A2	51151	bcgsc.ca	37	5	33947460	33947460	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC45A2	NM_016180	exon6	c.A1176G	p.V392V	.	.	74	4	72	0	.	93
SLC4A7	9497	bcgsc.ca	37	3	27465580	27465580	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLC4A7	NM_003615	exon8	c.A1187G	p.K396R	.	.	100	5	71	0	.	94
SLC9A2	6549	bcgsc.ca	37	2	103299862	103299862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	SLC9A2,brain,glioma,0	SLC9A2	NM_003048	exon4	c.G1147A	p.V383M	.	.	125	6	102	0	.	157
SLCO1A2	6579	bcgsc.ca	37	12	21428357	21428357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLCO1A2	NM_134431	exon14	c.T1612C	p.C538R	.	.	112	6	111	0	.	157
SLIT2	9353	bcgsc.ca	37	4	20530661	20530661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLIT2	NM_004787	exon16	c.G1552T	p.D518Y	.	.	86	5	62	0	.	521
SLMO1	10650	bcgsc.ca	37	18	12427316	12427316	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SLMO1	NM_001142405	exon5	c.A459G	p.A153A	.	.	84	6	81	0	.	90
SLX4IP	128710	bcgsc.ca	37	20	10602040	10602040	+	Missense_Mutation	SNP	C	C	T	rs143257409		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001009608	exon7	c.C484T	p.R162W	.	.	118	5	108	0	C|1.000;T|0.000	.
SMARCE1	6605	bcgsc.ca	37	17	38793802	38793802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SMARCE1	NM_003079	exon5	c.C179A	p.P60Q	.	.	118	5	56	0	.	227
SMC1B	27127	bcgsc.ca	37	22	45757769	45757769	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SMC1B	NM_148674	exon17	c.A2658G	p.K886K	.	.	149	5	92	0	.	229
SMG5	23381	bcgsc.ca	37	1	156221214	156221214	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SMG5	NM_015327	exon20	c.G2808T	p.K936N	.	.	120	5	132	0	.	231
SMG8	55181	bcgsc.ca	37	17	57290308	57290308	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SMG8	NM_018149	exon3	c.C2124A	p.T708T	.	.	77	5	34	0	.	93
SND1	27044	bcgsc.ca	37	7	127344915	127344915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SND1	NM_014390	exon8	c.T863A	p.L288H	.	.	56	4	60	0	.	92
SNRNP200	23020	bcgsc.ca	37	2	96955729	96955729	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SNRNP200	NM_014014	exon21	c.G2748T	p.A916A	.	.	104	5	72	0	.	162
SNX17	9784	bcgsc.ca	37	2	27599569	27599569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SNX17	NM_014748	exon15	c.G1396A	p.G466R	.	.	54	4	76	0	.	651
SORBS2	8470	bcgsc.ca	37	4	186541272	186541272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SORBS2	NM_001270771	exon17	c.T2837C	p.L946S	.	.	62	4	91	0	.	91
SPOPL	339745	bcgsc.ca	37	2	139307853	139307853	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SPOPL	NM_001001664	exon2	c.T67C	p.C23R	.	.	66	6	60	0	.	92
SPRR3	6707	hgsc.bcm.edu	37	1	152975806	152975829	+	In_Frame_Del	DEL	CCAGGCTACACCAAGGTCCCTGAA	CCAGGCTACACCAAGGTCCCTGAA	-	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	CCAGGCTACACCAAGGTCCCTGAA	CCAGGCTACACCAAGGTCCCTGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SPRR3	NM_001097589	exon2	c.310_333del	p.104_111del	.	.	85	17	44	0	.	45
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	47	28	29	0	A|0.000;C|0.697;T|0.303	45
SQLE	6713	bcgsc.ca	37	8	126019706	126019706	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SQLE	NM_003129	exon4	c.G799T	p.D267Y	.	.	110	6	62	0	.	523
SREK1	140890	bcgsc.ca	37	5	65449381	65449381	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SREK1	NM_001270493	exon2	c.G252T	p.T84T	.	.	261	8	165	0	.	91
SRSF9	8683	bcgsc.ca	37	12	120903525	120903525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SRSF9	NM_003769	exon2	c.A254G	p.E85G	.	.	41	4	39	0	.	226
ST6GALNAC1	55808	broad.mit.edu	37	17	74625634	74625634	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ST6GALNAC1	NM_018414	exon2	c.C291A	p.T97T	.	.	722	14	579	0	.	90
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52549455	52549455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STAB1	NM_015136	exon37	c.G3881T	p.S1294I	.	.	35	16	50	0	.	139
STAG1	10274	bcgsc.ca	37	3	136096531	136096531	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STAG1	NM_005862	exon23	c.T2341C	p.S781P	.	.	83	4	48	0	.	228
STARD7	56910	bcgsc.ca	37	2	96858192	96858192	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STARD7	NM_020151	exon6	c.C758A	p.P253Q	.	.	101	5	47	0	.	68
STIL	6491	ucsc.edu;bcgsc.ca	37	1	47748108	47748108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	STIL	NM_003035	exon11	c.G1157T	p.G386V	.	.	40	6	28	0	.	659
SULT1E1	6783	bcgsc.ca	37	4	70709995	70709995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SULT1E1	NM_005420	exon7	c.T656C	p.V219A	.	.	122	6	146	2	.	91
SUN1	23353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	909049	909049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUN1	NM_001130965	exon17	c.C2044T	p.L682F	.	.	22	6	24	0	.	90
SUPT6H	6830	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27027520	27027520	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SUPT6H	NM_003170	exon35	c.G4796A	p.S1599N	.	.	30	5	41	0	.	93
SVEP1	79987	bcgsc.ca	37	9	113194763	113194763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SVEP1	NM_153366	exon31	c.G5212T	p.G1738C	.	.	94	6	86	0	.	75
SVEP1	79987	bcgsc.ca	37	9	113217886	113217886	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SVEP1	NM_153366	exon22	c.C3771T	p.C1257C	.	.	65	4	31	0	.	75
SVIL	6840	ucsc.edu	37	10	29752485	29752485	+	Silent	SNP	G	G	T	rs56022643	byfrequency;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SVIL	NM_021738	exon35	c.C6213A	p.S2071S	.	.	28	4	36	1	G|0.995;A|0.005	96
SVOPL	136306	bcgsc.ca	37	7	138356858	138356858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SVOPL	NM_001139456	exon3	c.T179C	p.V60A	.	.	51	4	41	0	.	68
SYCP2L	221711	bcgsc.ca	37	6	10930613	10930613	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SYCP2L	NM_001040274	exon19	c.A1499G	p.Y500C	.	.	157	5	89	0	.	24
SYN3	8224	bcgsc.ca	37	22	33376641	33376641	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SYN3	NM_001135774	exon3	c.C358A	p.R120R	.	.	56	4	77	0	.	92
SYNE2	23224	bcgsc.ca	37	14	64463772	64463772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SYNE2	NM_182914	exon24	c.G3048T	p.K1016N	.	.	68	5	69	0	.	164
SZT2	23334	bcgsc.ca	37	1	43907180	43907180	+	Missense_Mutation	SNP	G	G	T	rs185048193	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	SZT2	NM_015284	exon53	c.G7346T	p.R2449L	.	.	70	4	75	0	G|0.999;A|0.000	144
TAF1	6872	bcgsc.ca	37	X	70598161	70598161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TAF1	NM_004606	exon7	c.C1070T	p.P357L	.	.	218	6	158	0	.	900
TAGLN3	29114	bcgsc.ca	37	3	111718352	111718352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TAGLN3	NM_001008272	exon2	c.A83G	p.N28S	.	.	73	5	55	0	.	90
TALDO1	6888	bcgsc.ca	37	11	763428	763428	+	Silent	SNP	T	T	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TALDO1	NM_006755	exon5	c.T546G	p.G182G	.	.	84	28	80	8	.	90
TANGO6	79613	bcgsc.ca	37	16	68941347	68941347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_024562	exon10	c.G1669T	p.D557Y	.	.	65	4	61	0	.	.
TANGO6	79613	bcgsc.ca	37	16	68941413	68941413	+	Missense_Mutation	SNP	G	G	T	rs61751928	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_024562	exon10	c.G1735T	p.G579W	.	.	115	7	116	0	G|0.982;A|0.018	.
TATDN2	9797	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10290922	10290922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TATDN2	NM_014760	exon2	c.G38T	p.S13I	.	.	63	13	52	0	.	92
TBC1D1	23216	bcgsc.ca	37	4	38020007	38020007	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D1	NM_015173	exon4	c.T915C	p.P305P	.	.	166	6	128	0	.	91
TBC1D28	254272	bcgsc.ca	37	17	18539889	18539889	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D28	NM_001039397	exon10	c.C519A	p.I173I	.	.	90	6	151	0	.	91
TBC1D4	9882	ucsc.edu	37	13	75901939	75901939	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D4	NM_014832	exon9	c.G1755T	p.R585R	.	.	43	4	27	0	.	95
TBC1D8	11138	ucsc.edu;bcgsc.ca	37	2	101624722	101624722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBC1D8	NM_001102426	exon20	c.A2984G	p.Q995R	.	.	34	4	23	0	.	25
TBR1	10716	bcgsc.ca	37	2	162274277	162274277	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TBR1	NM_006593	exon2	c.C783A	p.P261P	.	.	126	5	88	0	.	91
TCF20	6942	bcgsc.ca	37	22	42609772	42609772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TCF20	NM_181492	exon1	c.C1540A	p.P514T	.	.	68	4	92	0	.	95
TCF7L2	6934	bcgsc.ca	37	10	114903743	114903743	+	Silent	SNP	C	C	A	rs200396486	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TCF7L2	NM_001146283	exon7	c.C819A	p.T273T	.	.	45	4	41	0	C|0.999;T|0.000	586
TCF7L2	6934	bcgsc.ca	37	10	114920402	114920402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TCF7L2	NM_001146274	exon13	c.G1343T	p.R448L	.	.	78	6	80	0	.	586
TCP1	6950	bcgsc.ca	37	6	160200766	160200766	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TCP1	NM_030752	exon11	c.C1347A	p.P449P	.	.	77	4	57	0	.	153
TENM1	10178	bcgsc.ca	37	X	123540247	123540247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001163278	exon26	c.A5075G	p.E1692G	.	.	63	4	39	0	.	.
TENM4	26011	bcgsc.ca	37	11	78399115	78399115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001098816	exon29	c.C5244A	p.F1748L	.	.	60	4	49	0	.	.
TENM4	26011	bcgsc.ca	37	11	78449555	78449555	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001098816	exon20	c.G2817T	p.V939V	.	.	69	4	56	0	.	.
TEP1	7011	bcgsc.ca	37	14	20847170	20847170	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TEP1	NM_007110	exon36	c.T5222C	p.L1741P	.	.	62	4	68	0	.	95
TET1	80312	ucsc.edu;bcgsc.ca	37	10	70333688	70333688	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TET1	NM_030625	exon2	c.C1593A	p.A531A	.	.	43	4	30	0	.	663
THADA	63892	bcgsc.ca	37	2	43712445	43712445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	THADA	NM_001083953	exon26	c.T3764C	p.L1255P	.	.	55	4	36	0	.	228
THSD1	55901	bcgsc.ca	37	13	52971458	52971458	+	Missense_Mutation	SNP	C	C	A	rs141269153	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	THSD1,NS,malignant_melanoma,0	THSD1	NM_018676	exon3	c.G930T	p.M310I	.	.	75	5	52	0	.	94
THSD7A	221981	broad.mit.edu	37	7	11415430	11415430	+	Silent	SNP	G	G	T	rs183786782	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	THSD7A	NM_015204	exon27	c.C4965A	p.A1655A	.	.	619	9	373	0	G|0.999;A|0.001	71
TIPRL	261726	bcgsc.ca	37	1	168165875	168165875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TIPRL	NM_152902	exon5	c.C607T	p.H203Y	.	.	174	6	75	0	.	91
TLN1	7094	bcgsc.ca	37	9	35722157	35722157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TLN1	NM_006289	exon9	c.C907A	p.R303S	.	.	64	4	56	0	.	609
TM9SF2	9375	bcgsc.ca	37	13	100172318	100172318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TM9SF2	NM_004800	exon3	c.A268G	p.K90E	.	.	84	4	76	0	.	91
TM9SF4	9777	bcgsc.ca	37	20	30729672	30729672	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TM9SF4	NM_014742	exon5	c.C502A	p.R168R	.	.	59	4	62	0	.	514
TMED5	50999	bcgsc.ca	37	1	93620364	93620364	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMED5	NM_016040	exon4	c.C553A	p.R185R	.	.	151	5	103	0	.	91
TMEM174	134288	ucsc.edu;bcgsc.ca	37	5	72469916	72469916	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMEM174	NM_153217	exon2	c.A656G	p.E219G	.	.	45	4	39	0	.	91
TMEM205	374882	bcgsc.ca	37	19	11453601	11453601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMEM205	NM_033408	exon4	c.C460A	p.R154S	.	.	80	4	100	0	.	22
TMEM260	0	bcgsc.ca	37	14	57051749	57051749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_017799	exon2	c.G191T	p.G64V	.	.	75	4	67	0	.	.
TMEM52B	120939	bcgsc.ca	37	12	10339038	10339038	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_153022	exon3	c.G97T	p.A33S	.	.	55	4	105	0	.	.
TMPRSS11A	339967	bcgsc.ca	37	4	68784873	68784873	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMPRSS11A	NM_182606	exon8	c.G779T	p.R260I	.	.	76	4	62	0	.	69
TMPRSS7	344805	bcgsc.ca	37	3	111797679	111797679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TMPRSS7	NM_001042575	exon15	c.G1937T	p.R646L	.	.	68	5	55	0	.	70
TNFAIP2	7127	ucsc.edu;bcgsc.ca	37	14	103600074	103600074	+	Missense_Mutation	SNP	G	G	A	rs201264217		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP2	NM_006291	exon10	c.G1757A	p.R586H	.	.	25	4	18	0	.	90
TNFAIP8L3	388121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51397266	51397266	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNFAIP8L3	NM_207381	exon1	c.G108A	p.R36R	.	.	126	37	111	0	.	90
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175048705	175048705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TNN	NM_022093	exon3	c.G646A	p.V216M	.	.	54	26	55	0	.	138
TOP2A	7153	bcgsc.ca	37	17	38557197	38557197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOP2A	NM_001067	exon21	c.G2569T	p.G857C	.	.	91	5	62	0	.	655
TOP3A	7156	ucsc.edu	37	17	18183848	18183848	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOP3A	NM_004618	exon18	c.2144+2T>C	.	.	.	43	4	89	0	.	228
TOR2A	27433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130494466	130494466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TOR2A	NM_001134430	exon4	c.C685T	p.R229C	.	.	47	19	78	0	.	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	TP53,head_neck,carcinoma,0	TP53	NM_000546	exon6	c.A578G	p.H193R	.	.	61	35	79	0	.	70225
TRAF4	9618	bcgsc.ca	37	17	27075104	27075104	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRAF4	NM_004295	exon4	c.C370A	p.R124S	.	.	80	6	67	0	.	660
TRAF6	7189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36516546	36516546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRAF6	NM_004620	exon5	c.A658G	p.T220A	.	.	354	123	197	0	.	660
TRIM36	55521	bcgsc.ca	37	5	114472823	114472823	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRIM36	NM_018700	exon8	c.1122-2A>G	.	.	.	85	4	57	0	.	725
TRIM42	287015	bcgsc.ca	37	3	140406706	140406706	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRIM42	NM_152616	exon3	c.C1182A	p.I394I	.	.	137	5	102	0	.	227
TRPM3	80036	ucsc.edu;bcgsc.ca	37	9	73254017	73254017	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM3	NM_001007471	exon11	c.C1540A	p.R514S	.	.	42	5	53	0	.	521
TRPM5	29850	ucsc.edu;bcgsc.ca	37	11	2426267	2426267	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM5	NM_014555	exon24	c.A3398G	p.Q1133R	.	.	44	4	46	0	.	137
TRPM7	54822	ucsc.edu	37	15	50878674	50878674	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TRPM7	NM_017672	exon28	c.T4401C	p.T1467T	.	.	41	4	22	0	.	392
TSEN2	80746	bcgsc.ca	37	3	12560593	12560593	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TSEN2	NM_001145392	exon8	c.C996T	p.F332F	.	.	58	4	51	0	.	90
TTC21B	79809	bcgsc.ca	37	2	166773784	166773784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTC21B	NM_024753	exon14	c.C1882A	p.R628S	.	.	452	10	248	0	.	94
TTC37	9652	bcgsc.ca	37	5	94863783	94863783	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTC37	NM_014639	exon13	c.A1068G	p.K356K	.	.	121	5	82	0	.	94
TTC5	91875	bcgsc.ca	37	14	20764602	20764602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTC5	NM_138376	exon6	c.A643G	p.K215E	.	.	95	5	84	0	.	91
TTC8	123016	bcgsc.ca	37	14	89310183	89310183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTC8	NM_144596	exon7	c.G613T	p.D205Y	.	.	171	6	94	0	.	90
TTF1	7270	bcgsc.ca	37	9	135271895	135271895	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTF1	NM_007344	exon5	c.G1781T	p.R594M	.	.	101	5	77	0	.	94
TTN	7273	bcgsc.ca	37	2	179445293	179445293	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTN	NM_001267550	exon317	c.C66813A	p.L22271L	.	.	182	7	115	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179648462	179648462	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TTN	NM_001267550	exon17	c.A2826G	p.P942P	.	.	161	76	96	0	.	636
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	209	19	236	29	G|0.998;A|0.002	90
TYW5	129450	bcgsc.ca	37	2	200800762	200800762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	TYW5	NM_001039693	exon7	c.T583C	p.S195P	.	.	211	7	121	0	.	90
UBA7	7318	bcgsc.ca	37	3	49847072	49847072	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBA7	NM_003335	exon16	c.A1991G	p.Q664R	.	.	68	4	62	0	.	228
UBAP2L	9898	hgsc.bcm.edu;bcgsc.ca	37	1	154221748	154221748	+	Missense_Mutation	SNP	G	G	T	rs200980910	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBAP2L	NM_001127320	exon12	c.G1048T	p.G350C	.	.	231	13	170	0	G|0.999;A|0.000	91
UBE3C	9690	ucsc.edu;bcgsc.ca	37	7	157046656	157046656	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBE3C	NM_014671	exon20	c.A2703G	p.E901E	.	.	40	4	36	0	.	704
UBR3	130507	bcgsc.ca	37	2	170789478	170789478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UBR3	NM_172070	exon19	c.C2623A	p.R875S	.	.	129	6	73	0	.	68
UGGT2	55757	bcgsc.ca	37	13	96642269	96642269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UGGT2	NM_020121	exon8	c.A889G	p.S297G	.	.	88	6	49	1	.	92
UGT2A1	10941	bcgsc.ca	37	4	70460203	70460203	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UGT2A1	NM_001252274	exon6	c.T1794C	p.N598N	.	.	46	4	70	0	.	92
ULK3	25989	bcgsc.ca	37	15	75130532	75130532	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ULK3	NM_001099436	exon13	c.G1248A	p.A416A	.	.	67	5	104	0	.	290
UNC79	57578	ucsc.edu	37	14	94008823	94008823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_020818	exon14	c.C1005A	p.C335X	.	.	47	4	27	0	.	.
UNC80	285175	bcgsc.ca	37	2	210794642	210794642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UNC80	NM_032504	exon36	c.C5656A	p.P1886T	.	.	69	4	44	0	.	90
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17530990	17530990	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USH1C	NM_153676	exon18	c.T1926C	p.N642N	.	.	91	21	96	0	.	91
USH2A	7399	bcgsc.ca	37	1	215848295	215848295	+	Missense_Mutation	SNP	C	C	A	rs140202956	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USH2A	NM_206933	exon63	c.G12958T	p.D4320Y	.	.	117	5	60	0	C|0.999;G|0.001	115
USP40	55230	bcgsc.ca	37	2	234436101	234436101	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USP40	NM_018218	exon12	c.C1710A	p.T570T	.	.	97	5	50	0	.	455
USP46	64854	bcgsc.ca	37	4	53492248	53492248	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USP46	NM_022832	exon4	c.C498A	p.T166T	.	.	211	6	257	1	.	637
USP6NL	9712	ucsc.edu;bcgsc.ca	37	10	11543112	11543112	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USP6NL	NM_001080491	exon6	c.G423T	p.R141S	.	.	47	4	46	0	.	628
USPL1	10208	bcgsc.ca	37	13	31233382	31233382	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	USPL1	NM_005800	exon9	c.G3168T	p.P1056P	.	.	137	6	106	0	.	524
UTP20	27340	bcgsc.ca	37	12	101674945	101674945	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UTP20	NM_014503	exon2	c.C97A	p.R33R	.	.	143	7	108	0	.	155
UTRN	7402	bcgsc.ca	37	6	144869897	144869897	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	UTRN	NM_007124	exon46	c.C6717A	p.A2239A	.	.	94	4	84	0	.	95
VAV1	7409	bcgsc.ca	37	19	6833955	6833955	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	VAV1	NM_005428	exon19	c.A1768G	p.N590D	.	.	63	5	55	0	.	1276
VPS28	51160	bcgsc.ca	37	8	145651128	145651128	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	VPS28	NM_016208	exon5	c.G132T	p.A44A	.	.	100	4	98	0	.	90
VPS72	6944	bcgsc.ca	37	1	151149489	151149489	+	Silent	SNP	C	C	A	rs202226618	alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	VPS72	NM_001271087	exon6	c.G759T	p.S253S	.	.	277	9	206	0	C|0.999;T|0.001	154
VSIG10	54621	broad.mit.edu	37	12	118506237	118506237	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_019086	exon8	c.C1512A	p.T504T	.	.	332	9	247	0	.	.
WDFY3	23001	bcgsc.ca	37	4	85617232	85617232	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDFY3	NM_014991	exon58	c.T8792C	p.F2931S	.	.	67	4	68	0	.	93
WDPCP	51057	bcgsc.ca	37	2	63605532	63605532	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDPCP	NM_015910	exon12	c.T1737C	p.H579H	.	.	80	5	50	0	.	91
WDR17	116966	bcgsc.ca	37	4	177061049	177061049	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR17	NM_170710	exon11	c.A1438G	p.T480A	.	.	80	6	90	0	.	95
WDR35	57539	bcgsc.ca	37	2	20174371	20174371	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR35	NM_020779	exon7	c.G594T	p.L198F	.	.	282	8	131	1	.	91
WDR62	284403	bcgsc.ca	37	19	36583664	36583664	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR62	NM_173636	exon19	c.C2284A	p.R762R	.	.	93	6	96	1	.	90
WDR62	284403	bcgsc.ca	37	19	36585060	36585060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR62	NM_173636	exon20	c.G2461A	p.D821N	.	.	92	5	92	1	.	90
WDR81	124997	bcgsc.ca	37	17	1633701	1633701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR81	NM_001163809	exon2	c.T3695C	p.L1232P	.	.	26	4	70	0	.	91
WDR96	80217	bcgsc.ca	37	10	105942136	105942136	+	Silent	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WDR96	NM_025145	exon17	c.T2277C	p.D759D	.	.	166	6	147	0	.	95
WNK1	65125	bcgsc.ca	37	12	863386	863386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WNK1	NM_001184985	exon1	c.C655A	p.R219S	.	.	62	4	94	1	.	916
WNK3	65267	bcgsc.ca	37	X	54280418	54280418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WNK3	NM_001002838	exon13	c.G2341A	p.A781T	.	.	62	4	33	0	.	441
WT1	7490	bcgsc.ca	37	11	32438053	32438053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WT1	NM_024424	exon5	c.G984T	p.W328C	.	.	73	4	60	0	.	6891
WWP2	11060	bcgsc.ca	37	16	69820937	69820937	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WWP2	NM_001270454	exon2	c.G24T	p.R8R	.	.	86	6	77	0	.	658
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69965734	69965734	+	Silent	SNP	C	C	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WWP2	NM_001270454	exon16	c.C1623T	p.R541R	.	.	23	13	32	0	.	658
WWP2	11060	ucsc.edu	37	16	69875976	69875976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	WWP2	NM_001270454	exon6	c.G528T	p.E176D	.	.	38	4	24	0	.	658
XKR9	389668	bcgsc.ca	37	8	71593511	71593511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	XKR9	NM_001011720	exon3	c.A218G	p.E73G	.	.	265	7	155	0	.	92
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	745776	745776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	YES1	NM_005433	exon6	c.A656G	p.N219S	.	.	152	62	103	0	.	547
ZAK	0	broad.mit.edu;bcgsc.ca	37	2	173955772	173955772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZAK	NM_133646	exon2	c.G13T	p.G5C	.	.	216	11	118	0	.	522
ZBTB18	10472	bcgsc.ca	37	1	244218538	244218538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_205768	exon2	c.G1462T	p.G488W	.	.	85	4	72	0	.	.
ZC3H13	23091	bcgsc.ca	37	13	46544532	46544532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZC3H13	NM_015070	exon13	c.C2537A	p.P846Q	.	.	66	5	58	0	.	92
ZC3H6	376940	bcgsc.ca	37	2	113090009	113090009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZC3H6	NM_198581	exon12	c.A3514G	p.K1172E	.	.	53	4	29	0	.	93
ZC3H7A	29066	bcgsc.ca	37	16	11861366	11861366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZC3H7A	NM_014153	exon13	c.G1429T	p.G477C	.	.	265	7	193	0	.	94
ZER1	10444	bcgsc.ca	37	9	131503070	131503070	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZER1	NM_006336	exon12	c.C1834A	p.Q612K	.	.	88	5	80	0	.	91
ZFHX4	79776	ucsc.edu;bcgsc.ca	37	8	77766028	77766028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZFHX4	NM_024721	exon10	c.A6871G	p.T2291A	.	.	41	4	39	0	.	98
ZFP28	140612	bcgsc.ca	37	19	57066153	57066153	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZFP28	NM_020828	exon8	c.C1999A	p.H667N	.	.	65	4	47	1	.	91
ZFYVE16	9765	broad.mit.edu	37	5	79747476	79747476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZFYVE16	NM_001105251	exon11	c.G3555T	p.W1185C	.	.	147	8	75	0	.	90
ZHX2	22882	bcgsc.ca	37	8	123963949	123963949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZHX2	NM_014943	exon3	c.G199T	p.G67W	.	.	58	4	41	0	.	227
ZKSCAN8	7745	bcgsc.ca	37	6	28116544	28116544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_006298	exon2	c.A359G	p.E120G	.	.	60	4	39	0	.	.
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133733009	133733009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF10	NM_015394	exon5	c.A1177G	p.I393V	.	.	66	25	64	0	.	154
ZNF180	7733	bcgsc.ca	37	19	44981698	44981698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF180	NM_013256	exon5	c.A1000G	p.T334A	.	.	81	6	46	0	.	92
ZNF189	7743	bcgsc.ca	37	9	104171863	104171863	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF189	NM_003452	exon3	c.G1813T	p.G605C	.	.	53	4	46	0	.	229
ZNF211	10520	ucsc.edu	37	19	58152971	58152971	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF211	NM_001265597	exon5	c.G1312T	p.E438X	.	.	42	4	39	0	.	92
ZNF233	353355	bcgsc.ca	37	19	44771107	44771107	+	Silent	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF233	NM_001207005	exon4	c.G231A	p.G77G	.	.	146	7	104	0	.	92
ZNF248	57209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38121994	38121994	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF248	NM_001267606	exon4	c.G289C	p.D97H	.	.	76	26	40	0	.	91
ZNF260	339324	bcgsc.ca	37	19	37005141	37005141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF260	NM_001166038	exon3	c.T1000C	p.C334R	.	.	56	4	55	0	.	90
ZNF268	10795	broad.mit.edu;bcgsc.ca	37	12	133768159	133768159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF268	NM_152943	exon4	c.A319G	p.R107G	.	.	147	8	119	0	.	23
ZNF271	10778	bcgsc.ca	37	18	32888193	32888193	+	RNA	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF271	.	.	.	.	.	.	135	6	83	0	.	90
ZNF280C	55609	bcgsc.ca	37	X	129349187	129349187	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF280C	NM_017666	exon15	c.C1959A	p.A653A	.	.	136	7	80	0	.	132
ZNF280D	54816	broad.mit.edu	37	15	56935177	56935177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF280D	NM_017661	exon20	c.C2232A	p.P744P	.	.	465	9	343	0	.	46
ZNF318	24149	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43323547	43323547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF318	NM_014345	exon4	c.C1525T	p.R509C	.	.	104	40	64	1	.	157
ZNF559	84527	bcgsc.ca	37	19	9449880	9449880	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF559	NM_001202408	exon4	c.C237A	p.T79T	.	.	212	7	146	0	.	91
ZNF570	148268	bcgsc.ca	37	19	37966795	37966795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF570	NM_144694	exon3	c.T46C	p.F16L	.	.	129	5	113	0	.	91
ZNF606	80095	bcgsc.ca	37	19	58490659	58490659	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF606	NM_025027	exon7	c.A1389G	p.K463K	.	.	91	5	70	0	.	92
ZNF626	199777	bcgsc.ca	37	19	20828519	20828519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF626	NM_001076675	exon3	c.A197G	p.K66R	.	.	202	6	188	0	.	515
ZNF702P	79986	broad.mit.edu;bcgsc.ca	37	19	53473156	53473156	+	RNA	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	236	12	199	0	.	.
ZNF77	58492	bcgsc.ca	37	19	2936687	2936687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF77	NM_021217	exon3	c.T146C	p.V49A	.	.	52	4	46	0	.	91
ZNF841	284371	bcgsc.ca	37	19	52579298	52579298	+	Silent	SNP	G	G	T	rs144690937	by1000genomes;alternate_allele	TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	NM_001136499	exon6	c.C270A	p.T90T	.	.	86	5	63	0	G|0.999;A|0.001	.
ZNF862	643641	bcgsc.ca	37	7	149544991	149544991	+	Silent	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF862	NM_001099220	exon4	c.C409A	p.R137R	.	.	62	5	54	0	.	69
ZNF91	7644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23545393	23545393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNF91	NM_003430	exon4	c.G388T	p.D130Y	.	.	130	37	104	0	.	90
ZNHIT6	54680	bcgsc.ca	37	1	86172177	86172177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZNHIT6	NM_017953	exon2	c.G670T	p.G224C	.	.	88	5	61	0	.	153
ZRANB3	84083	bcgsc.ca	37	2	135966492	135966492	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZRANB3	NM_032143	exon18	c.G2552T	p.G851V	.	.	120	6	65	0	.	658
ZW10	9183	bcgsc.ca	37	11	113628406	113628406	+	Silent	SNP	T	T	C	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	ZW10	NM_004724	exon7	c.A903G	p.E301E	.	.	67	4	40	0	.	228
CTD-2160D9.1	0	bcgsc.ca	37	5	99285107	99285108	+	RNA	DNP	CC	CC	AA	novel		TCGA-G3-A25Z-01A-11D-A16V-10	TCGA-G3-A25Z-10A-01D-A16V-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	3fd6af37-1d08-48ee-ab7f-162bb2005b98	543bf78c-8771-4841-84c6-cee5677bb250	.	.	.	.	.	.	.	.	.	.	.	.	.	
