Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADSSL1	122622	ucsc.edu;bcgsc.ca	37	14	105196358	105196358	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ADSSL1	NM_199165	exon1	c.T129C	p.S43S	.	.	48	5	48	1	.	515
AKR1C2	1646	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	5043738	5043738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	AKR1C2	NM_001354	exon4	c.G220A	p.V74M	.	.	241	15	214	1	.	514
ALPK2	115701	broad.mit.edu	37	18	56204545	56204545	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ALPK2	NM_052947	exon5	c.A2874G	p.E958E	.	.	110	4	132	0	.	765
ANKRD19P	138649	ucsc.edu	37	9	95599535	95599535	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	36	4	34	0	.	.
ANKRD36BP2	645784	broad.mit.edu	37	2	89102230	89102230	+	RNA	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	67	3	48	0	.	.
ANKRD55	79722	broad.mit.edu	37	5	55422800	55422800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ANKRD55	NM_024669	exon8	c.A746G	p.E249G	.	.	128	4	106	0	.	91
ANO4	121601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101333093	101333093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ANO4	NM_178826	exon3	c.T56A	p.V19E	.	.	171	37	165	0	.	96
ARHGEF17	9828	broad.mit.edu	37	11	73020510	73020510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ARHGEF17	NM_014786	exon1	c.G827T	p.G276V	.	.	9	2	26	0	.	227
ASH1L	55870	broad.mit.edu	37	1	155408199	155408199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ASH1L	NM_018489	exon5	c.G5747T	p.R1916I	.	.	97	5	90	0	.	234
ATG7	10533	bcgsc.ca	37	3	11468362	11468362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ATG7	NM_006395	exon18	c.G2041A	p.G681S	.	.	78	4	77	0	.	90
ATP8B2	57198	bcgsc.ca	37	1	154302878	154302878	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ATP8B2	NM_020452	exon3	c.A137G	p.E46G	.	.	70	5	60	0	.	92
BCL2	596	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	60795937	60795937	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BCL2	NM_000633	exon3	c.G641A	p.W214X	.	.	96	36	76	0	.	1271
BRD7	29117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	50357553	50357553	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	BRD7	NM_013263	exon12	c.T1388A	p.L463X	.	.	103	55	107	0	.	90
C14orf80	283643	broad.mit.edu	37	14	105963767	105963767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C14orf80	NM_001134875	exon6	c.T758C	p.F253S	.	.	23	3	37	0	.	90
C16orf90	646174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3543984	3543984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001080524	exon3	c.C404T	p.S135F	.	.	21	8	22	0	.	.
C1orf87	127795	bcgsc.ca	37	1	60503688	60503688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C1orf87	NM_152377	exon6	c.A839G	p.E280G	.	.	80	5	75	0	.	154
C3orf17	25871	broad.mit.edu	37	3	112730109	112730109	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C3orf17	NM_015412	exon6	c.G696A	p.Q232Q	.	.	84	3	73	1	.	90
C4orf21	55345	broad.mit.edu	37	4	113510963	113510963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C4orf21	NM_018392	exon11	c.A3044G	p.D1015G	.	.	135	5	140	0	.	90
C6orf10	10665	broad.mit.edu	37	6	32261510	32261510	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C6orf10	.	.	.	.	.	.	355	6	297	0	.	91
C9orf153	389766	broad.mit.edu	37	9	88844502	88844502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	C9orf153	NM_001276368	exon3	c.A17G	p.D6G	.	.	44	3	80	1	.	90
CACNG1	786	broad.mit.edu	37	17	65052201	65052201	+	Silent	SNP	G	G	A	rs201378629		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CACNG1	NM_000727	exon4	c.G483A	p.S161S	.	.	82	5	62	0	G|0.999;A|0.001	90
CCDC30	728621	broad.mit.edu	37	1	43076739	43076739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CCDC30	NM_001080850	exon10	c.A1474G	p.K492E	.	.	69	3	74	0	.	90
CCDC68	80323	broad.mit.edu;bcgsc.ca	37	18	52605304	52605304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CCDC68	NM_025214	exon5	c.T229C	p.S77P	.	.	171	5	143	0	.	91
CD163L1	283316	broad.mit.edu	37	12	7526062	7526062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CD163L1	NM_174941	exon14	c.C3584T	p.A1195V	.	.	152	4	125	0	.	100
CENPC1	1060	ucsc.edu	37	4	68374720	68374720	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CENPC1	NM_001812	exon10	c.G1716A	p.R572R	.	.	179	2	176	0	.	205
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88478474	88478474	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CEP290	NM_025114	exon35	c.T4593G	p.S1531S	.	.	178	62	151	0	.	96
CHST14	113189	broad.mit.edu	37	15	40764244	40764244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CHST14	NM_130468	exon1	c.C832T	p.H278Y	.	.	73	4	67	0	.	90
CLEC4D	338339	broad.mit.edu	37	12	8671683	8671683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CLEC4D	NM_080387	exon4	c.C311T	p.T104M	.	.	93	4	82	0	.	90
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130354582	130354582	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	COL6A6	NM_001102608	exon27	c.C5068A	p.L1690M	.	.	58	25	53	0	.	76
CRIM1	51232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	36739445	36739445	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CRIM1	NM_016441	exon10	c.G1688A	p.R563H	.	.	144	7	129	0	.	118
CROCCP2	84809	broad.mit.edu	37	1	16946282	16946282	+	RNA	SNP	C	C	T	rs11260835		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	37	4	41	1	C|0.750;T|0.250	.
CSRP1	1465	bcgsc.ca	37	1	201454455	201454455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CSRP1	NM_001193572	exon5	c.A461G	p.E154G	.	.	58	4	53	0	.	91
CWC27	10283	broad.mit.edu	37	5	64082396	64082396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	CWC27	NM_005869	exon6	c.A541G	p.R181G	.	.	265	6	210	1	.	90
DDX49	54555	bcgsc.ca	37	19	19038632	19038632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DDX49	NM_019070	exon11	c.A1160G	p.Q387R	.	.	54	5	70	0	.	227
DEPDC1B	55789	bcgsc.ca	37	5	59899276	59899276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DEPDC1B	NM_001145208	exon9	c.T1184C	p.V395A	.	.	74	4	64	0	.	91
DHRSX	207063	broad.mit.edu	37	X	2184833	2184833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_145177	exon5	c.T544C	p.S182P	.	.	384	6	344	2	.	.
DICER1	23405	broad.mit.edu	37	14	95557384	95557384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DICER1	NM_030621	exon27	c.A5590G	p.T1864A	.	.	189	4	155	0	.	961
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	3	52383278	52383278	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNAH1	NM_015512	exon14	c.A2368G	p.K790E	.	.	97	5	95	0	.	67
DNAH14	127602	broad.mit.edu	37	1	225273387	225273387	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNAH14	NM_001373	exon21	c.T3469C	p.S1157P	.	.	276	4	259	0	.	23
DNAH5	1767	broad.mit.edu	37	5	13891090	13891090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNAH5	NM_001369	exon17	c.A2572G	p.T858A	.	.	242	5	220	2	.	182
DNHD1	144132	broad.mit.edu	37	11	6530137	6530137	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	DNHD1	NM_173589	exon4	c.C948T	p.P316P	.	.	131	4	99	0	.	24
EMC1	23065	bcgsc.ca	37	1	19568881	19568881	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001271427	exon5	c.T467C	p.L156P	.	.	70	4	58	0	.	.
EML1	2009	bcgsc.ca	37	14	100361037	100361037	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EML1	NM_001008707	exon7	c.T676C	p.S226P	.	.	66	4	59	0	.	138
EMP3	2014	broad.mit.edu	37	19	48830161	48830161	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EMP3	NM_001425	exon2	c.C60T	p.F20F	.	.	117	3	105	0	.	514
ENPP2	5168	broad.mit.edu;bcgsc.ca	37	8	120575206	120575206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ENPP2	NM_006209	exon25	c.T2468C	p.I823T	.	.	112	4	73	1	.	292
EXOC3	11336	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	462403	462403	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EXOC3	NM_007277	exon9	c.A1634G	p.E545G	.	.	89	11	90	0	.	90
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65612308	65612308	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	EYS	NM_001142800	exon17	c.C2727T	p.V909V	.	.	109	43	103	0	.	660
FAHD2A	51011	broad.mit.edu	37	2	96076698	96076698	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FAHD2A	NM_016044	exon5	c.A609G	p.K203K	.	.	202	6	192	0	.	91
FAM111A	63901	broad.mit.edu	37	11	58920197	58920197	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FAM111A	NM_001142520	exon5	c.T1056C	p.R352R	.	.	148	5	126	0	.	93
FAM177A1	283635	broad.mit.edu	37	14	35550275	35550275	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FAM177A1	NM_173607	exon5	c.A552G	p.K184K	.	.	182	5	195	2	.	226
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145580146	145580146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FBXL6	NM_012162	exon7	c.C1039G	p.R347G	.	.	75	25	70	0	.	658
FLNB	2317	broad.mit.edu;bcgsc.ca	37	3	58084513	58084513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FLNB	NM_001457	exon8	c.A1223G	p.D408G	.	.	209	8	193	0	.	593
FMR1	2332	broad.mit.edu	37	X	147009846	147009846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FMR1	NM_002024	exon4	c.T205C	p.S69P	.	.	138	4	112	2	.	133
FMR1	2332	broad.mit.edu;bcgsc.ca	37	X	147018119	147018119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	FMR1	NM_002024	exon10	c.T977C	p.V326A	.	.	142	6	109	0	.	133
FPGT-TNNI3K	100526835	bcgsc.ca	37	1	75005975	75005975	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001112808	exon26	c.A2712G	p.Q904Q	.	.	93	4	76	0	.	.
GAB1	2549	broad.mit.edu;bcgsc.ca	37	4	144359739	144359739	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GAB1	NM_207123	exon4	c.A1181G	p.N394S	.	.	83	4	71	0	.	1146
GPR98	84059	broad.mit.edu	37	5	89986857	89986857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GPR98	NM_032119	exon31	c.A6950G	p.E2317G	.	.	121	6	89	0	.	103
GRIN1	2902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	9	140057102	140057102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GRIN1	NM_001185091	exon15	c.A1987G	p.I663V	.	.	25	11	19	0	.	187
GRIN2B	2904	broad.mit.edu	37	12	13716339	13716339	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GRIN2B	NM_000834	exon13	c.C3833T	p.T1278I	.	.	186	5	170	0	.	231
GSDMC	56169	broad.mit.edu	37	8	130762763	130762763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	GSDMC	NM_031415	exon11	c.C997T	p.L333F	.	.	109	4	73	1	.	93
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37306331	37306331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HEATR5B	NM_019024	exon3	c.G270T	p.Q90H	.	.	155	51	139	0	.	142
HERC1	8925	broad.mit.edu	37	15	63955323	63955323	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HERC1	NM_003922	exon44	c.T8761C	p.L2921L	.	.	171	5	174	0	.	666
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12121666	12121666	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HIVEP1	NM_002114	exon4	c.G1638A	p.L546L	.	.	65	21	62	0	.	139
HS2ST1	9653	bcgsc.ca	37	1	87538686	87538686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	HS2ST1	NM_012262	exon2	c.A194G	p.D65G	.	.	154	5	150	1	.	90
IFI35	3430	bcgsc.ca	37	17	41165854	41165854	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	IFI35	NM_005533	exon6	c.T630C	p.P210P	.	.	60	5	54	0	.	91
IL1B	3553	bcgsc.ca	37	2	113588968	113588968	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	IL1B	NM_000576	exon6	c.A498G	p.E166E	.	.	73	4	64	0	.	522
JUNB	3726	bcgsc.ca	37	19	12903379	12903379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	JUNB	NM_002229	exon1	c.A794G	p.D265G	.	.	2	2	23	0	.	846
KIAA1462	57608	broad.mit.edu	37	10	30318048	30318048	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIAA1462	NM_020848	exon3	c.G1029A	p.P343P	.	.	81	3	92	0	.	72
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368567	18368567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIAA1683	NM_001145304	exon4	c.G3527A	p.R1176H	.	.	11	4	40	0	.	92
KIAA1841	84542	bcgsc.ca	37	2	61324880	61324880	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIAA1841	NM_032506	exon12	c.A1258G	p.T420A	.	.	156	5	143	0	.	90
KIF6	221458	bcgsc.ca	37	6	39330221	39330221	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KIF6	NM_145027	exon17	c.A1935G	p.E645E	.	.	92	4	107	0	.	713
KPNA7	402569	ucsc.edu;bcgsc.ca	37	7	98790710	98790710	+	Missense_Mutation	SNP	A	A	G	rs188239934	by1000genomes;alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KPNA7	NM_001145715	exon5	c.T568C	p.F190L	.	.	47	4	53	0	A|0.999;C|0.001	158
KRTAP10-1	386677	broad.mit.edu	37	21	45959358	45959358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KRTAP10-1	NM_198691	exon1	c.T676C	p.C226R	.	.	59	7	55	2	.	91
KRTAP5-6	440023	bcgsc.ca	37	11	1718698	1718698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KRTAP5-6	NM_001012416	exon1	c.G223T	p.G75C	.	.	116	20	115	4	.	90
KRTAP5-6	440023	ucsc.edu	37	11	1718697	1718697	+	Silent	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KRTAP5-6	NM_001012416	exon1	c.G222C	p.G74G	.	.	116	18	115	5	.	90
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134366278	134366278	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	KY	NM_178554	exon2	c.C198T	p.H66H	.	.	62	16	76	0	.	24
LARP4	113251	bcgsc.ca	37	12	50847417	50847424	+	Frame_Shift_Del	DEL	TGGTCTCC	TGGTCTCC	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	TGGTCTCC	TGGTCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LARP4	NM_001170808	exon9	c.979_986del	p.327_329del	.	.	84	5	86	0	.	91
LCA5	167691	bcgsc.ca	37	6	80198821	80198821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LCA5	NM_001122769	exon7	c.A1211G	p.E404G	.	.	125	6	101	0	.	90
LCK	3932	broad.mit.edu	37	1	32741956	32741956	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LCK	NM_005356	exon8	c.G650A	p.C217Y	.	.	24	3	36	0	.	1378
LOC283683	0	broad.mit.edu	37	15	23108865	23108865	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	33	3	33	0	.	.
LOC388849	0	bcgsc.ca;mdanderson.org	37	22	20138246	20138246	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	81	17	110	1	.	.
LOC401010	0	ucsc.edu	37	2	132201153	132201153	+	RNA	SNP	A	A	C	rs71345557		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	81	18	61	7	C|1.000;|0.000	.
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu	37	X	78010878	78010878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LPAR4	NM_005296	exon2	c.T512C	p.I171T	.	.	88	4	75	0	.	133
LRR1	122769	bcgsc.ca	37	14	50069151	50069151	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LRR1	NM_152329	exon2	c.T247C	p.L83L	.	.	80	4	64	0	.	227
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	192439	192439	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LRRC14B	NM_001080478	exon1	c.C786T	p.D262D	.	.	69	21	76	0	.	69
LRRC40	55631	broad.mit.edu	37	1	70644630	70644630	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LRRC40	NM_017768	exon6	c.T708C	p.P236P	.	.	248	6	201	0	.	91
LRRK2	120892	bcgsc.ca	37	12	40714961	40714961	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	LRRK2,NS,carcinoma,-1	LRRK2	NM_198578	exon35	c.A5141G	p.E1714G	.	.	78	4	84	0	.	533
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235937265	235937265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYST	NM_000081	exon19	c.A5661T	p.E1887D	.	.	277	87	216	0	.	143
LYVE1	10894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10580711	10580711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	LYVE1	NM_006691	exon6	c.G916A	p.E306K	.	.	344	104	327	0	.	515
MAGI3	260425	bcgsc.ca	37	1	114223821	114223821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MAGI3	NM_152900	exon20	c.T3191C	p.V1064A	.	.	103	5	72	0	.	524
MBIP	51562	broad.mit.edu	37	14	36783756	36783756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MBIP	NM_016586	exon4	c.A533G	p.N178S	.	.	260	5	295	0	.	658
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30673414	30673414	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MDC1	NM_014641	exon10	c.C3546T	p.P1182P	.	.	265	82	240	0	.	273
MFSD8	256471	broad.mit.edu;bcgsc.ca	37	4	128842751	128842751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MFSD8	NM_152778	exon12	c.A1278G	p.I426M	.	.	122	6	149	0	.	92
MLL	4297	bcgsc.ca	37	11	118379914	118379914	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MLL	NM_001197104	exon29	c.A10899G	p.A3633A	.	.	60	4	41	0	.	1255
MMP21	118856	bcgsc.ca	37	10	127460872	127460872	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MMP21	NM_147191	exon4	c.A894G	p.G298G	.	.	108	5	98	0	.	228
MOSPD3	64598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100211234	100211234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MOSPD3	NM_001040098	exon4	c.C416T	p.A139V	.	.	66	25	54	0	.	92
MUC16	94025	broad.mit.edu	37	19	9085885	9085885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MUC16	NM_024690	exon1	c.C5930A	p.T1977K	.	.	111	4	162	1	.	566
MUC4	4585	broad.mit.edu	37	3	195509611	195509611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MUC4	NM_018406	exon2	c.T8840A	p.V2947D	.	.	203	5	186	0	.	90
MUM1	84939	bcgsc.ca	37	19	1357078	1357078	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MUM1	NM_032853	exon3	c.T131C	p.L44P	.	.	126	5	161	1	.	90
MYO16	23026	bcgsc.ca	37	13	109459089	109459089	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MYO16	NM_001198950	exon7	c.A804G	p.G268G	.	.	75	5	85	0	.	142
MYO7B	4648	bcgsc.ca	37	2	128321758	128321758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	MYO7B	NM_001080527	exon3	c.A49G	p.T17A	.	.	73	4	58	0	.	47
ND2	0	bcgsc.ca	37	MT	5471	5471	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	ENST00000361453	exon1	c.G1002A	p.T334T	.	.	143	115	118	1	.	.
NOP14-AS1	317648	ucsc.edu	37	4	2940485	2940485	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	48	1	69	1	.	.
NOS2	4843	broad.mit.edu	37	17	26107839	26107839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	NOS2	NM_000625	exon9	c.G958A	p.E320K	.	.	82	3	82	0	.	156
OR1I1	126370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15198366	15198366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR1I1	NM_001004713	exon1	c.G490A	p.A164T	.	.	69	9	88	0	.	71
OR2M5	127059	broad.mit.edu	37	1	248309312	248309312	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR2M5	NM_001004690	exon1	c.T863C	p.L288P	.	.	204	7	193	0	.	71
OR51I1	390063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5462320	5462320	+	Missense_Mutation	SNP	C	C	T	rs138548705		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR51I1	NM_001005288	exon1	c.G425A	p.R142H	.	.	92	36	83	1	C|1.000;T|0.000	69
OR5H1	26341	broad.mit.edu	37	3	97851659	97851659	+	Missense_Mutation	SNP	A	A	T	rs199787047	byfrequency	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR5H1	NM_001005338	exon1	c.A118T	p.M40L	.	.	658	5	606	1	A|0.978;T|0.022	136
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875185	247875185	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OR6F1	NM_001005286	exon1	c.G873A	p.T291T	.	.	61	19	55	0	.	68
OTUD4	54726	bcgsc.ca	37	4	146095817	146095817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	OTUD4	NM_017493	exon1	c.A44G	p.E15G	.	.	61	4	57	0	.	565
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PABPC1	NM_002568	exon7	c.C956T	p.T319I	.	.	384	5	249	1	.	68
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	176564726	176564726	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PAPPA2	NM_021936	exon3	c.C1986T	p.P662P	.	.	39	14	39	0	.	548
PDLIM5	10611	broad.mit.edu	37	4	95508211	95508211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PDLIM5	NM_001011515	exon9	c.C683T	p.A228V	.	.	270	4	236	0	.	117
PHKA1	5255	bcgsc.ca	37	X	71873345	71873345	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PHKA1	NM_001172436	exon11	c.C1077T	p.L359L	.	.	81	5	73	0	.	134
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61005153	61005174	+	Frame_Shift_Del	DEL	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GACCTGTACAGAAGAAGATGGG	GACCTGTACAGAAGAAGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PHYHIPL	NM_032439	exon5	c.933_954del	p.311_318del	.	.	90	12	130	0	.	90
PKHD1	5314	broad.mit.edu	37	6	51613416	51613416	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PKHD1	NM_170724	exon58	c.T8998C	p.L3000L	.	.	82	3	86	0	.	603
PPT2	9374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32130607	32130607	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PPT2	NM_138717	exon9	c.G807A	p.G269G	.	.	142	37	140	0	.	44
PRUNE2	158471	broad.mit.edu	37	9	79321736	79321736	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PRUNE2	NM_015225	exon8	c.A5454G	p.E1818E	.	.	128	4	141	0	.	157
PSMD2	5708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184020202	184020202	+	Missense_Mutation	SNP	G	G	A	rs11545182	alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PSMD2	NM_002808	exon6	c.G749A	p.R250H	.	.	111	31	111	0	G|1.000;|0.000	90
PTEN	5728	broad.mit.edu	37	10	89692987	89692987	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	PTEN	NM_000314	exon5	c.A471G	p.E157E	.	.	181	5	138	0	.	17735
RAD21	5885	bcgsc.ca	37	8	117870655	117870655	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	RAD21	NM_006265	exon5	c.A417G	p.R139R	.	.	102	5	54	0	.	227
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48954378	48954378	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	RB1,NS,carcinoma,0	RB1	NM_000321	exon16	c.1498+1G>-	.	.	.	107	55	117	0	.	3784
RHOC	389	bcgsc.ca	37	1	113244327	113244327	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	RHOC	NM_001042679	exon6	c.T417C	p.V139V	.	.	76	4	83	0	.	848
RNU6-71	100873774	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56469970	56469970	+	RNA	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	.	.	.	164	12	178	0	.	.
ROCK1	6093	bcgsc.ca	37	18	18629763	18629763	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ROCK1	NM_005406	exon3	c.G254A	p.G85D	.	.	144	6	119	0	.	1026
RYR1	6261	bcgsc.ca	37	19	38949926	38949926	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	RYR1	NM_001042723	exon19	c.T2308C	p.F770L	.	.	131	5	89	0	.	100
SERPINA6	866	bcgsc.ca	37	14	94780610	94780610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SERPINA6	NM_001756	exon2	c.A376G	p.T126A	.	.	62	4	87	0	.	653
SH3D21	79729	broad.mit.edu	37	1	36786269	36786269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SH3D21	NM_001162530	exon14	c.A2005G	p.T669A	.	.	121	4	122	1	.	91
SHQ1	55164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	72890225	72890225	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SHQ1	NM_018130	exon4	c.T457A	p.L153I	.	.	153	59	132	0	.	137
SLC5A2	6524	bcgsc.ca	37	16	31500597	31500597	+	Missense_Mutation	SNP	T	T	C	rs199521654	alternate_allele	TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLC5A2	NM_003041	exon12	c.T1603C	p.F535L	.	.	53	4	61	0	T|0.999;G|0.001	91
SLC5A6	8884	broad.mit.edu;bcgsc.ca	37	2	27428301	27428301	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLC5A6	NM_021095	exon7	c.T651C	p.V217V	.	.	131	5	124	0	.	92
SLC9A2	6549	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	103317675	103317675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLC9A2	NM_003048	exon8	c.C1733T	p.T578I	.	.	180	23	147	0	.	157
SLTM	79811	bcgsc.ca	37	15	59191831	59191831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SLTM	NM_024755	exon7	c.A895G	p.M299V	.	.	151	6	159	0	.	91
SMCR8	140775	bcgsc.ca	37	17	18221402	18221402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SMCR8	NM_144775	exon1	c.T2299C	p.W767R	.	.	61	4	74	0	.	91
SMG1	23049	broad.mit.edu	37	16	18845540	18845540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SMG1	NM_015092	exon50	c.T8551C	p.Y2851H	.	.	113	4	88	0	.	1160
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1241722	1241722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SNTG2	NM_018968	exon10	c.C782G	p.T261R	.	.	37	10	30	0	.	136
SOCS6	9306	broad.mit.edu	37	18	67992181	67992181	+	Missense_Mutation	SNP	A	A	G	rs149490841		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SOCS6	NM_004232	exon2	c.A277G	p.T93A	.	.	77	4	80	0	A|1.000;G|0.000	721
SPAG8	26206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35810300	35810300	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPAG8	NM_001039592	exon6	c.G1207C	p.D403H	.	.	67	21	86	0	.	91
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84606921	84606921	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001001670	exon4	c.C1536T	p.S512S	.	.	204	42	203	1	.	.
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	228884827	228884827	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SPHKAP	NM_030623	exon7	c.A743T	p.Q248L	.	.	177	52	134	0	.	167
SRCAP	10847	broad.mit.edu	37	16	30721442	30721442	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SRCAP	NM_006662	exon8	c.T1127A	p.V376E	.	.	78	4	56	0	.	94
SRGAP2D	100996712	broad.mit.edu	37	1	121116689	121116689	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001271887	exon3	c.C246T	p.H82H	.	.	246	5	192	0	.	.
STK36	27148	broad.mit.edu	37	2	219540851	219540851	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	STK36	NM_015690	exon6	c.C534T	p.D178D	.	.	181	3	140	0	.	1004
STRBP	55342	broad.mit.edu	37	9	125898377	125898377	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	STRBP	NM_018387	exon16	c.G1716A	p.E572E	.	.	142	4	147	0	.	154
SYDE2	84144	broad.mit.edu;bcgsc.ca	37	1	85647886	85647886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	SYDE2	NM_032184	exon3	c.A2439G	p.I813M	.	.	265	9	214	0	.	70
TAF1	6872	bcgsc.ca	37	X	70617304	70617304	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TAF1	NM_004606	exon23	c.A3668G	p.D1223G	.	.	190	6	190	0	.	900
TAF1L	138474	broad.mit.edu	37	9	32633490	32633490	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TAF1L	NM_153809	exon1	c.T2088C	p.D696D	.	.	475	6	448	2	.	870
TAS2R30	259293	broad.mit.edu	37	12	11286298	11286298	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001097643	exon1	c.A546G	p.L182L	.	.	235	5	259	0	.	.
TBP	6908	bcgsc.ca	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	.	.	66	3	54	1	.	91
TCF3	6929	broad.mit.edu	37	19	1612307	1612307	+	Missense_Mutation	SNP	C	C	T	rs200433738		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TCF3	NM_001136139	exon17	c.G1712A	p.R571H	.	.	61	3	92	0	.	721
TCIRG1	10312	broad.mit.edu;mdanderson.org	37	11	67811701	67811701	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TCIRG1	NM_006019	exon9	c.C910T	p.L304L	.	.	8	2	15	0	.	227
TEFM	79736	bcgsc.ca	37	17	29227532	29227532	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_024683	exon3	c.T544C	p.W182R	.	.	142	6	128	0	.	.
TEX11	56159	bcgsc.ca	37	X	69811635	69811635	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TEX11	NM_001003811	exon26	c.A2151G	p.T717T	.	.	73	4	62	0	.	178
TIAL1	7073	hgsc.bcm.edu	37	10	121342011	121342013	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.237_239del	p.79_80del	.	.	152	0	163	0	.	91
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342007	121342008	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.242_243del	p.81_81del	.	.	152	46	163	0	.	91
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121342010	121342010	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TIAL1	NM_001033925	exon3	c.240delT	p.A80fs	.	.	153	46	163	0	.	91
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	129190073	129190073	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM132C	NM_001136103	exon9	c.C2560T	p.R854X	.	.	27	9	37	0	.	68
TMEM2	23670	broad.mit.edu	37	9	74361119	74361119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM2	NM_001135820	exon3	c.G470A	p.G157E	.	.	104	3	117	0	.	92
TMEM51	55092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15541828	15541828	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TMEM51	NM_018022	exon2	c.G245A	p.C82Y	.	.	36	11	41	0	.	90
TSPAN4	7106	bcgsc.ca	37	11	865973	865973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TSPAN4	NM_003271	exon8	c.T620C	p.I207T	.	.	66	4	81	0	.	153
TTI2	80185	broad.mit.edu	37	8	33367321	33367321	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_001265581	exon3	c.T777C	p.Y259Y	.	.	98	5	118	0	.	.
TTK	7272	broad.mit.edu;bcgsc.ca	37	6	80723000	80723000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TTK	NM_003318	exon9	c.A901G	p.T301A	.	.	180	7	158	1	.	1299
TUFT1	7286	broad.mit.edu;bcgsc.ca	37	1	151546769	151546769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	TUFT1	NM_020127	exon8	c.G618C	p.R206S	.	.	143	9	131	0	.	90
UGT1A5	54579	broad.mit.edu	37	2	234622211	234622211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	UGT1A5	NM_019078	exon1	c.T574C	p.S192P	.	.	258	5	265	1	.	3
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43529725	43529725	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	UMODL1	NM_173568	exon10	c.T1573A	p.C525S	.	.	14	8	24	0	.	93
USP38	84640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	144135683	144135683	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.T2554C	p.S852P	.	.	133	6	103	0	.	660
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	144135888	144135888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP38	NM_032557	exon9	c.G2759T	p.R920I	.	.	217	76	172	0	.	660
USP53	54532	broad.mit.edu	37	4	120189449	120189449	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	USP53	NM_019050	exon13	c.T1162C	p.S388P	.	.	264	5	287	0	.	660
VWA8	23078	bcgsc.ca	37	13	42144775	42144790	+	Frame_Shift_Del	DEL	ATGGCATGTTCTGTCC	ATGGCATGTTCTGTCC	-	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	ATGGCATGTTCTGTCC	ATGGCATGTTCTGTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_015058	exon44	c.5423_5438del	p.1808_1813del	.	.	104	5	116	0	.	.
ZCCHC8	55596	broad.mit.edu	37	12	122964807	122964807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZCCHC8	NM_017612	exon11	c.T1070C	p.V357A	.	.	160	6	131	0	.	90
ZDHHC2	51201	broad.mit.edu;bcgsc.ca	37	8	17053014	17053014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_016353	exon4	c.T254C	p.F85S	.	.	130	5	96	0	.	.
ZNF234	10780	broad.mit.edu;bcgsc.ca	37	19	44660620	44660620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	NM_006630	exon6	c.G451T	p.D151Y	.	.	214	12	224	1	.	.
ZNF638	27332	broad.mit.edu;bcgsc.ca	37	2	71582860	71582860	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZNF638	NM_014497	exon3	c.G1329A	p.Q443Q	.	.	296	9	264	0	.	94
ZNF709	163051	broad.mit.edu	37	19	12575585	12575585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZNF709	NM_152601	exon4	c.G1151A	p.R384Q	.	.	81	3	91	0	.	90
ZSWIM5	57643	broad.mit.edu;bcgsc.ca	37	1	45553672	45553672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	ZSWIM5	NM_020883	exon2	c.A833G	p.D278G	.	.	142	6	137	0	.	22
MEX3B	84206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82336764	82336765	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A3CH-01A-11D-A22F-10	TCGA-G3-A3CH-11A-11D-A22F-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f57d294a-3b16-45e5-a1ff-1eaae9229aee	cd23964a-9449-49ed-a1db-32a3dfb922bb	.	.	.	.	.	p.G149E	.	.	.	.	.	.	.	
