Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACAA2	10449	bcgsc.ca	37	18	47320766	47320766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ACAA2	NM_006111	exon5	c.A461G	p.D154G	.	.	46	4	45	0	.	91
ACVR1	90	broad.mit.edu	37	2	158637052	158637052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ACVR1	NM_001105	exon4	c.G128A	p.G43D	.	.	60	3	125	0	.	980
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	24802167	24802167	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ADCY4	NM_001198592	exon3	c.A187G	p.T63A	.	.	63	12	174	0	.	93
AGO2	27161	bcgsc.ca	37	8	141566088	141566088	+	Silent	SNP	T	T	C	rs150046525		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	NM_012154	exon10	c.A1176G	p.P392P	.	.	49	4	92	0	T|1.000;C|0.000	.
ALG13	79868	bcgsc.ca	37	X	110961089	110961089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ALG13	NM_001099922	exon9	c.T1021C	p.S341P	.	.	70	4	83	0	.	130
ANK2	287	bcgsc.ca	37	4	114284582	114284582	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ANK2	NM_001148	exon40	c.A10845G	p.A3615A	.	.	55	4	74	0	.	583
ANKRD30B	374860	ucsc.edu;bcgsc.ca	37	18	14752857	14752857	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ANKRD30B	NM_001145029	exon3	c.A356G	p.E119G	.	.	43	5	58	0	.	24
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21249790	21249790	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	APOB	NM_000384	exon15	c.T2114C	p.F705S	.	.	140	22	239	0	.	175
ARCN1	372	bcgsc.ca	37	11	118455308	118455308	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ARCN1	NM_001655	exon5	c.A767G	p.K256R	.	.	67	4	101	0	.	90
ARHGAP18	93663	bcgsc.ca	37	6	129927106	129927106	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ARHGAP18	NM_033515	exon11	c.1283-2A>G	.	.	.	73	5	90	0	.	230
ARL5B	221079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18964121	18964121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ARL5B	NM_178815	exon6	c.G516A	p.M172I	.	.	109	22	172	0	.	228
ATRN	8455	bcgsc.ca	37	20	3571886	3571886	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ATRN	NM_139321	exon19	c.A3255G	p.T1085T	.	.	123	7	171	0	.	154
ATXN3L	92552	bcgsc.ca	37	X	13337435	13337435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ATXN3L	NM_001135995	exon1	c.A619G	p.T207A	.	.	81	4	114	0	.	542
BPNT1	10380	ucsc.edu	37	1	220231263	220231263	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	BPNT1	.	.	.	.	.	.	53	2	94	1	.	91
C12orf4	57102	bcgsc.ca	37	12	4626267	4626267	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C12orf4	NM_020374	exon9	c.T1122C	p.Y374Y	.	.	77	4	106	0	.	226
C15orf55	256646	bcgsc.ca	37	15	34647281	34647281	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C15orf55	NM_175741	exon6	c.A1338G	p.R446R	.	.	103	4	152	0	.	206
C1orf227	149643	ucsc.edu	37	1	213003605	213003605	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C1orf227	NM_001024601	exon4	c.278-2A>G	.	.	.	35	4	18	0	.	514
C1orf86	199990	ucsc.edu	37	1	2124355	2124355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C1orf86	NM_001256946	exon4	c.A530G	p.N177S	.	.	38	4	80	0	.	90
C3orf17	25871	bcgsc.ca	37	3	112724843	112724843	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C3orf17	NM_015412	exon9	c.A1244G	p.K415R	.	.	45	4	67	0	.	90
C6orf170	221322	bcgsc.ca	37	6	121563477	121563477	+	Missense_Mutation	SNP	C	C	A	rs77089134		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C6orf170	NM_152730	exon18	c.G2027T	p.W676L	.	.	48	11	73	3	.	92
C9orf43	257169	bcgsc.ca	37	9	116191195	116191195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	C9orf43	NM_152786	exon13	c.C1123T	p.P375S	.	.	87	4	131	0	.	90
CABLES1	91768	bcgsc.ca	37	18	20768826	20768826	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CABLES1	NM_001100619	exon2	c.T870C	p.S290S	.	.	92	5	147	0	.	522
CACNG8	59283	hgsc.bcm.edu	37	19	54483251	54483251	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CACNG8	NM_031895	exon3	c.C498T	p.F166F	.	.	59	4	93	0	.	90
CD2AP	23607	ucsc.edu;bcgsc.ca	37	6	47576858	47576858	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CD2AP	NM_012120	exon16	c.1633-1G>A	.	.	.	43	4	55	0	.	92
CD86	942	bcgsc.ca	37	3	121810471	121810471	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CD86	NM_001206924	exon2	c.T38C	p.L13P	.	.	128	5	179	0	.	92
CEP192	55125	bcgsc.ca	37	18	13018548	13018548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CEP192	NM_032142	exon8	c.T859C	p.S287P	.	.	114	5	164	0	.	27
CHDC2	286464	bcgsc.ca	37	X	36103638	36103638	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	NM_173695	exon5	c.A624G	p.S208S	.	.	69	5	77	0	.	.
CNTN1	1272	bcgsc.ca	37	12	41463793	41463793	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CNTN1	NM_001843	exon24	c.T3013C	p.L1005L	.	.	68	4	119	0	.	1149
CNTN5	53942	ucsc.edu;bcgsc.ca	37	11	100170074	100170074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CNTN5	NM_001243270	exon19	c.A2566G	p.N856D	.	.	36	4	53	0	.	366
COL4A5	1287	broad.mit.edu	37	X	107823959	107823959	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	COL4A5	NM_000495	exon15	c.A882G	p.P294P	.	.	87	5	126	0	.	133
COL7A1	1294	bcgsc.ca	37	3	48619190	48619190	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	COL7A1	NM_000094	exon48	c.A4671G	p.G1557G	.	.	76	5	110	0	.	160
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207787833	207787833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CR1	NM_000651	exon40	c.A6660C	p.E2220D	.	.	143	27	201	0	.	93
CSE1L	1434	bcgsc.ca	37	20	47683771	47683771	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CSE1L	NM_001256135	exon6	c.A521G	p.K174R	.	.	94	5	123	0	.	290
CUBN	8029	bcgsc.ca	37	10	16982217	16982217	+	Missense_Mutation	SNP	A	A	G	rs145305920		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CUBN	NM_001081	exon37	c.T5362C	p.S1788P	.	.	58	4	70	0	A|1.000;G|0.000	166
CUL1	8454	bcgsc.ca	37	7	148456653	148456653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CUL1	NM_003592	exon6	c.T548C	p.V183A	.	.	85	4	93	0	.	226
CX3CR1	1524	broad.mit.edu	37	3	39307060	39307060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CX3CR1	NM_001171174	exon2	c.T1037C	p.V346A	.	.	116	5	215	1	.	658
CYP17A1	1586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	104597036	104597036	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	CYP17A1	NM_000102	exon1	c.C83A	p.P28H	.	.	58	15	107	1	.	90
DDX41	51428	bcgsc.ca	37	5	176940381	176940381	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DDX41	NM_016222	exon11	c.T1203C	p.A401A	.	.	89	5	192	1	.	226
DEPDC5	9681	bcgsc.ca	37	22	32188796	32188796	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DEPDC5	NM_001242897	exon12	c.T760C	p.F254L	.	.	40	4	74	0	.	519
DHX40	79665	bcgsc.ca	37	17	57654653	57654653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DHX40	NM_024612	exon8	c.C1000T	p.P334S	.	.	48	4	64	0	.	226
DIO2	1734	bcgsc.ca	37	14	80669204	80669204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DIO2	.	.	.	.	.	.	74	4	109	0	.	22
DIS3	22894	bcgsc.ca	37	13	73347939	73347939	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DIS3	NM_014953	exon8	c.A1122G	p.T374T	.	.	60	4	105	0	.	90
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84972221	84972221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DNAH6	NM_001370	exon63	c.A10360G	p.I3454V	.	.	79	22	122	0	.	69
DNAI2	64446	bcgsc.ca	37	17	72287243	72287243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DNAI2	NM_001172810	exon6	c.T695C	p.L232P	.	.	70	4	117	0	.	92
DOCK8	81704	bcgsc.ca	37	9	429734	429734	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DOCK8	NM_203447	exon36	c.A4506G	p.E1502E	.	.	69	4	122	0	.	517
DPY19L4	286148	bcgsc.ca	37	8	95795899	95795899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	DPY19L4	NM_181787	exon17	c.A1717G	p.R573G	.	.	77	4	115	0	.	92
EGFLAM	133584	bcgsc.ca	37	5	38427166	38427166	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	EGFLAM	NM_001205301	exon14	c.T1866C	p.T622T	.	.	53	4	126	1	.	187
EIF2AK1	27102	bcgsc.ca	37	7	6068567	6068567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	EIF2AK1	NM_014413	exon12	c.A1429G	p.T477A	.	.	54	4	83	0	.	408
ELL3	80237	bcgsc.ca	37	15	44067787	44067787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ELL3	NM_025165	exon5	c.G505A	p.A169T	.	.	90	4	180	0	.	91
ESCO1	114799	ucsc.edu;bcgsc.ca	37	18	19147982	19147982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ESCO1	NM_052911	exon5	c.T1604C	p.L535P	.	.	35	4	76	0	.	90
FAM115A	9747	broad.mit.edu	37	7	143573603	143573603	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FAM115A	NM_001206938	exon2	c.A99G	p.G33G	.	.	199	5	327	0	.	68
FAM153C	653316	broad.mit.edu	37	5	177466401	177466401	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	.	.	.	.	.	.	662	6	1109	1	.	.
FAM155B	27112	bcgsc.ca	37	X	68749540	68749540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FAM155B	NM_015686	exon3	c.A1160G	p.H387R	.	.	55	4	112	0	.	131
FAM21C	253725	broad.mit.edu	37	10	46272818	46272818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FAM21C	NM_015262	exon22	c.A2240G	p.E747G	.	.	553	6	795	0	.	91
FAT3	120114	bcgsc.ca	37	11	92087325	92087325	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FAT3	NM_001008781	exon1	c.T2047C	p.C683R	.	.	63	4	101	0	.	73
FBN3	84467	broad.mit.edu;bcgsc.ca	37	19	8201395	8201395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FBN3	NM_032447	exon10	c.A1222G	p.T408A	.	.	121	8	212	0	.	100
FHOD1	29109	bcgsc.ca	37	16	67264103	67264103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FHOD1	NM_013241	exon20	c.A3080G	p.E1027G	.	.	79	22	110	4	.	221
FRMPD2	143162	broad.mit.edu	37	10	49414916	49414916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FRMPD2	NM_001018071	exon14	c.A1672G	p.R558G	.	.	140	5	187	1	.	153
FZD6	8323	bcgsc.ca	37	8	104342133	104342133	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	FZD6	NM_003506	exon6	c.A1792G	p.R598G	.	.	78	4	123	0	.	658
GEN1	348654	bcgsc.ca	37	2	17961307	17961307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GEN1	NM_182625	exon13	c.T1327C	p.S443P	.	.	43	4	42	0	.	359
GINS2	51659	bcgsc.ca	37	16	85721097	85721097	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GINS2	NM_016095	exon2	c.T174C	p.C58C	.	.	57	4	105	0	.	90
GPR116	221395	bcgsc.ca	37	6	46826444	46826444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GPR116	NM_015234	exon17	c.A3196G	p.T1066A	.	.	106	5	179	0	.	91
GRIN3B	116444	ucsc.edu;bcgsc.ca	37	19	1004833	1004833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GRIN3B	NM_138690	exon3	c.T1333C	p.C445R	.	.	32	4	76	0	.	90
GUF1	60558	bcgsc.ca	37	4	44697705	44697705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GUF1	NM_021927	exon15	c.A1789G	p.I597V	.	.	66	4	116	0	.	91
GYS2	2998	bcgsc.ca	37	12	21699331	21699331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	GYS2	NM_021957	exon12	c.G1496A	p.G499D	.	.	45	4	70	0	.	523
HEATR6	63897	bcgsc.ca	37	17	58126948	58126948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	HEATR6	NM_022070	exon16	c.T2540C	p.L847P	.	.	44	4	64	0	.	227
HRASLS2	54979	bcgsc.ca	37	11	63327637	63327637	+	Missense_Mutation	SNP	A	A	G	rs201739970		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	HRASLS2	NM_017878	exon2	c.T38C	p.L13P	.	.	79	5	117	0	A|0.999;G|0.000	90
HTR2A	3356	broad.mit.edu;bcgsc.ca	37	13	47409197	47409197	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	HTR2A	NM_000621	exon4	c.T1191C	p.C397C	.	.	202	6	274	1	.	519
IL31RA	133396	broad.mit.edu;bcgsc.ca	37	5	55202086	55202086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	IL31RA	NM_001242637	exon9	c.T1222C	p.S408P	.	.	131	5	164	1	.	91
IMPG2	50939	bcgsc.ca	37	3	100964750	100964750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	IMPG2	NM_016247	exon12	c.A1439G	p.E480G	.	.	79	5	99	0	.	93
INTS10	55174	bcgsc.ca	37	8	19709183	19709183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	INTS10	NM_018142	exon17	c.T2000C	p.I667T	.	.	81	4	174	0	.	91
ITPR2	3709	ucsc.edu;bcgsc.ca	37	12	26808682	26808682	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ITPR2	NM_002223	exon20	c.T2548C	p.F850L	.	.	45	4	31	0	.	542
ITPRIPL1	150771	broad.mit.edu	37	2	96993600	96993600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ITPRIPL1	NM_178495	exon1	c.C1255T	p.R419C	.	.	110	5	154	0	.	69
JAK2	3717	bcgsc.ca	37	9	5055733	5055733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	JAK2	NM_004972	exon8	c.A1001G	p.E334G	.	.	46	4	65	0	.	75307
KCNN3	3782	bcgsc.ca	37	1	154685984	154685984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	KCNN3	NM_001204087	exon8	c.A1900G	p.R634G	.	.	64	4	121	1	.	91
KDM5D	8284	bcgsc.ca	37	Y	21872338	21872338	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	KDM5D	NM_001146705	exon20	c.C2600T	p.T867I	.	.	94	4	142	1	.	560
KDM6B	23135	ucsc.edu;bcgsc.ca	37	17	7752833	7752833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	KDM6B	NM_001080424	exon11	c.A3227G	p.E1076G	.	.	68	6	81	0	.	205
KIF14	9928	bcgsc.ca	37	1	200567524	200567524	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	KIF14	NM_014875	exon14	c.A2390G	p.D797G	.	.	73	4	104	0	.	140
LAMB4	22798	bcgsc.ca	37	7	107763574	107763574	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	LAMB4	NM_007356	exon3	c.34+2T>C	.	.	.	71	4	98	0	.	140
LEPR	3953	bcgsc.ca	37	1	66036352	66036352	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	LEPR	NM_001003680	exon4	c.T237C	p.F79F	.	.	120	5	111	0	.	91
LINGO4	339398	bcgsc.ca	37	1	151773591	151773591	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	LINGO4	NM_001004432	exon2	c.A1590G	p.R530R	.	.	101	5	170	0	.	90
MAGT1	84061	bcgsc.ca	37	X	77096751	77096751	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MAGT1	NM_032121	exon8	c.A989G	p.K330R	.	.	86	5	159	0	.	63
MCM2	4171	bcgsc.ca	37	3	127336905	127336905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MCM2	NM_004526	exon12	c.A1994G	p.D665G	.	.	62	4	96	1	.	230
MCTP2	55784	bcgsc.ca	37	15	95001420	95001420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MCTP2	NM_018349	exon19	c.T2305C	p.S769P	.	.	82	4	114	0	.	93
MED4	29079	bcgsc.ca	37	13	48655863	48655863	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MED4	NM_014166	exon5	c.T426C	p.A142A	.	.	30	3	37	0	.	187
MKLN1	4289	bcgsc.ca	37	7	131099471	131099471	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MKLN1	NM_001145354	exon9	c.778+2T>C	.	.	.	68	4	109	0	.	135
MME	4311	bcgsc.ca	37	3	154860087	154860087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MME	NM_007287	exon12	c.A1156G	p.T386A	.	.	74	4	110	0	.	516
MYH3	4621	bcgsc.ca	37	17	10539142	10539142	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	MYH3	NM_002470	exon29	c.A3885G	p.K1295K	.	.	100	4	154	0	.	95
NCEH1	57552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172365871	172365871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NCEH1	NM_020792	exon2	c.C268T	p.H90Y	.	.	81	16	149	0	.	90
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13123	13123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	ENST00000361567	exon1	c.T787C	p.F263L	.	.	28	21	17	0	.	.
NDUFV3	4731	bcgsc.ca	37	21	44317076	44317076	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NDUFV3	NM_001001503	exon2	c.T88C	p.S30P	.	.	88	4	121	0	.	92
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	152466364	152466364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NEB	NM_001271208	exon81	c.G12289C	p.D4097H	.	.	111	9	132	0	.	145
NFXL1	152518	bcgsc.ca	37	4	47881119	47881119	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NFXL1	NM_152995	exon16	c.A1932G	p.K644K	.	.	88	4	103	0	.	524
NLRP10	338322	bcgsc.ca	37	11	7982321	7982321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NLRP10	NM_176821	exon2	c.A838G	p.R280G	.	.	70	4	109	0	.	209
NOL9	79707	bcgsc.ca	37	1	6605194	6605194	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NOL9	NM_024654	exon4	c.T791C	p.V264A	.	.	99	5	137	0	.	515
NPAT	4863	bcgsc.ca	37	11	108057268	108057268	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NPAT	NM_002519	exon8	c.T667C	p.S223P	.	.	80	4	99	0	.	117
NR2C2	7182	bcgsc.ca	37	3	15070106	15070106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NR2C2	NM_003298	exon9	c.A869G	p.Q290R	.	.	59	4	77	0	.	226
NRXN3	9369	bcgsc.ca	37	14	80158514	80158514	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NRXN3	NM_001105250	exon4	c.602-2A>G	.	.	.	51	4	39	0	.	587
NUB1	51667	bcgsc.ca	37	7	151064032	151064032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NUB1	NM_016118	exon9	c.T880C	p.C294R	.	.	70	4	139	0	.	226
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134053778	134053778	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	NUP214	NM_005085	exon24	c.A3400G	p.T1134A	.	.	53	18	88	0	.	1131
OR1E2	8388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3336389	3336389	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	OR1E2	NM_003554	exon1	c.T747A	p.T249T	.	.	119	23	178	0	.	131
OR5M8	219484	bcgsc.ca	37	11	56258123	56258123	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	OR5M8	NM_001005282	exon1	c.T724C	p.S242P	.	.	55	5	50	0	.	68
OTOL1	131149	bcgsc.ca	37	3	161214739	161214739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	NM_001080440	exon1	c.T144C	p.S48S	.	.	69	4	122	1	.	.
PADI6	353238	bcgsc.ca	37	1	17699682	17699682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PADI6	NM_207421	exon2	c.C248T	p.A83V	.	.	58	4	103	0	.	113
PCDHGA1	56114	bcgsc.ca	37	5	140710300	140710300	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PCDHGA1	NM_018912	exon1	c.T49C	p.C17R	.	.	98	5	153	0	.	137
PCSK2	5126	broad.mit.edu	37	20	17410151	17410151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PCSK2	NM_002594	exon7	c.A692G	p.Y231C	.	.	63	4	100	1	.	157
PHTF2	57157	bcgsc.ca	37	7	77569396	77569396	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PHTF2	NM_001127357	exon12	c.T1415C	p.V472A	.	.	124	5	155	0	.	23
PKD1	5310	ucsc.edu;bcgsc.ca	37	16	2162836	2162836	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PKD1	NM_000296	exon13	c.A3114G	p.A1038A	.	.	23	4	45	0	.	91
PLCB2	5330	bcgsc.ca	37	15	40584587	40584587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PLCB2	NM_004573	exon22	c.T2384C	p.L795P	.	.	58	4	104	0	.	275
PPAP2B	8613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	56989987	56989987	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PPAP2B	NM_003713	exon3	c.C537T	p.Y179Y	.	.	118	23	232	0	.	91
PPP1R1C	151242	bcgsc.ca	37	2	182852560	182852560	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PPP1R1C	NM_001261424	exon2	c.T97C	p.S33P	.	.	60	4	104	0	.	204
PRSS21	10942	bcgsc.ca	37	16	2871562	2871562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PRSS21	NM_006799	exon6	c.T901C	p.F301L	.	.	35	4	52	1	.	92
PRSS36	146547	bcgsc.ca	37	16	31150464	31150464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PRSS36	NM_173502	exon15	c.A2563G	p.S855G	.	.	136	5	224	0	.	91
PTGR2	145482	bcgsc.ca	37	14	74346761	74346761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	PTGR2	NM_152444	exon7	c.A733G	p.N245D	.	.	72	4	142	0	.	90
PTPRQ	374462	broad.mit.edu	37	12	80998871	80998871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	NM_001145026	exon24	c.T4127C	p.V1376A	.	.	54	3	73	0	.	.
QRICH2	84074	bcgsc.ca	37	17	74289162	74289162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	QRICH2	NM_032134	exon4	c.G1148A	p.G383D	.	.	74	4	166	0	.	94
RGPD3	653489	broad.mit.edu	37	2	107049631	107049631	+	Silent	SNP	C	C	T	rs2912696		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RGPD3	NM_001144013	exon16	c.G2316A	p.A772A	.	.	292	4	369	0	.	23
RNASE8	122665	broad.mit.edu	37	14	21526192	21526192	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RNASE8	NM_138331	exon1	c.T141C	p.P47P	.	.	121	5	233	1	.	90
RPA1	6117	bcgsc.ca	37	17	1733407	1733407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RPA1	NM_002945	exon1	c.A20G	p.E7G	.	.	61	6	157	2	.	651
RPGRIP1L	23322	bcgsc.ca	37	16	53686756	53686756	+	Missense_Mutation	SNP	T	T	C	rs121918198	alternate_allele	TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RPGRIP1L	NM_001127897	exon15	c.A1843G	p.T615A	.	.	120	6	177	0	.	91
RPS6KA3	6197	bcgsc.ca	37	X	20227475	20227475	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RPS6KA3	NM_004586	exon3	c.A174G	p.E58E	.	.	48	4	66	0	.	1504
RYR3	6263	bcgsc.ca	37	15	34078171	34078171	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	RYR3	NM_001243996	exon66	c.A9577G	p.K3193E	.	.	52	4	99	1	.	520
SBNO1	55206	bcgsc.ca	37	12	123789178	123789178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SBNO1	NM_001167856	exon28	c.A3719G	p.K1240R	.	.	91	4	122	0	.	292
SCN11A	11280	bcgsc.ca	37	3	38889099	38889099	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SCN11A	NM_014139	exon26	c.T4462C	p.F1488L	.	.	36	4	58	0	.	99
SDHAP2	727956	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs77981248		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	.	.	.	.	.	.	71	4	171	1	A|0.500;G|0.500	.
SETD1B	23067	bcgsc.ca	37	12	122260763	122260763	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SETD1B	NM_015048	exon12	c.T4149C	p.P1383P	.	.	83	5	241	0	.	86
SIDT1	54847	bcgsc.ca	37	3	113325907	113325907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SIDT1	NM_017699	exon15	c.A1424G	p.N475S	.	.	65	4	112	1	.	95
SIRPG	55423	bcgsc.ca	37	20	1630044	1630044	+	Silent	SNP	A	A	C	rs202125965	byfrequency	TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SIRPG	NM_001039508	exon2	c.T84G	p.G28G	.	.	36	13	53	2	A|0.994;C|0.006	23
SLC22A12	116085	bcgsc.ca	37	11	64360351	64360351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLC22A12	NM_144585	exon2	c.A503G	p.D168G	.	.	67	5	100	0	.	91
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64367214	64367214	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLC22A12	NM_144585	exon7	c.C1137T	p.F379F	.	.	120	27	304	0	.	91
SLC7A13	157724	bcgsc.ca	37	8	87230038	87230038	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLC7A13	NM_138817	exon3	c.T840C	p.A280A	.	.	50	4	65	0	.	90
SLC9A2	6549	bcgsc.ca	37	2	103321130	103321130	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLC9A2	NM_003048	exon10	c.A1973G	p.H658R	.	.	60	5	108	0	.	157
SLCO1A2	6579	bcgsc.ca	37	12	21453437	21453437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLCO1A2	NM_134431	exon9	c.G755A	p.C252Y	.	.	58	4	84	0	.	157
SLIT3	6586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	168189663	168189663	+	Silent	SNP	G	G	A	rs187066924		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SLIT3	NM_001271946	exon15	c.C1491T	p.S497S	.	.	56	10	120	1	G|0.999;A|0.000	95
SMOC1	64093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70490056	70490056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SMOC1	NM_001034852	exon11	c.G1183A	p.A395T	.	.	100	19	195	0	.	92
SPAG17	200162	bcgsc.ca	37	1	118535263	118535263	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SPAG17	NM_206996	exon36	c.T5187C	p.T1729T	.	.	62	5	65	0	.	158
SPAG9	9043	bcgsc.ca	37	17	49062305	49062305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SPAG9	NM_001130528	exon24	c.G3067A	p.A1023T	.	.	46	4	80	0	.	659
SPTBN2	6712	bcgsc.ca	37	11	66461810	66461810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SPTBN2	NM_006946	exon21	c.A4303G	p.R1435G	.	.	72	4	124	1	.	155
ST7	7982	bcgsc.ca	37	7	116849930	116849930	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ST7	NM_021908	exon13	c.T1344C	p.H448H	.	.	67	4	104	0	.	515
STIM2	57620	bcgsc.ca	37	4	27024392	27024392	+	Missense_Mutation	SNP	A	A	G	rs199899002		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	STIM2	NM_001169118	exon13	c.A2039G	p.N680S	.	.	158	5	176	0	A|0.999;G|0.001	91
STRBP	55342	ucsc.edu	37	9	125921415	125921415	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	STRBP	NM_018387	exon9	c.A795G	p.R265R	.	.	45	4	81	0	.	154
SYNE2	23224	bcgsc.ca	37	14	64568756	64568756	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	SYNE2	NM_182914	exon64	c.T12488C	p.V4163A	.	.	68	4	101	0	.	164
TEX11	56159	bcgsc.ca	37	X	69849467	69849467	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	TEX11	NM_001003811	exon19	c.T1647C	p.A549A	.	.	106	4	138	0	.	178
TMEM45A	55076	bcgsc.ca	37	3	100275616	100275616	+	Missense_Mutation	SNP	A	A	G	rs200561146		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	TMEM45A	NM_018004	exon3	c.A203G	p.E68G	.	.	138	34	198	12	.	93
TNRC18	84629	bcgsc.ca	37	7	5430166	5430166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	TNRC18	NM_001080495	exon4	c.T437C	p.L146P	.	.	104	5	210	1	.	46
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45833800	45833800	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	TRPM2	NM_003307	exon20	c.A2989T	p.S997C	.	.	83	16	163	0	.	92
UGP2	7360	mdanderson.org	37	2	64069324	64069324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	UGP2	NM_006759	exon1	c.C5G	p.S2W	.	.	15	3	33	0	.	90
UHRF1BP1	54887	bcgsc.ca	37	6	34824568	34824568	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	UHRF1BP1	NM_017754	exon11	c.T1293C	p.D431D	.	.	97	4	135	0	.	93
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57640050	57640050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	USP29	NM_020903	exon4	c.T7A	p.S3T	.	.	75	17	173	0	.	661
UTS2	10911	bcgsc.ca	37	1	7906821	7906821	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	UTS2	.	.	.	.	.	.	62	5	86	0	.	90
VPS13C	54832	bcgsc.ca	37	15	62217740	62217740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	VPS13C	NM_020821	exon53	c.A6524G	p.Q2175R	.	.	77	4	81	0	.	92
WDR87	83889	bcgsc.ca	37	19	38377335	38377335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	.	NM_031951	exon6	c.A6859G	p.K2287E	.	.	57	4	78	0	.	.
ZNF418	147686	bcgsc.ca	37	19	58438751	58438751	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ZNF418	NM_133460	exon4	c.T798C	p.S266S	.	.	69	4	86	0	.	90
ZNF479	90827	bcgsc.ca	37	7	57187565	57187565	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ZNF479	NM_033273	exon5	c.A1557G	p.K519K	.	.	171	5	181	1	.	72
ZNHIT6	54680	bcgsc.ca	37	1	86172015	86172015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ZNHIT6	NM_017953	exon3	c.A746G	p.K249R	.	.	89	4	162	0	.	153
ZW10	9183	broad.mit.edu	37	11	113629311	113629311	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CI-01A-11D-A20W-10	TCGA-G3-A3CI-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03de17c7-1318-460c-966a-477083e6fbc1	4a2e4e6a-8fef-4c74-968b-c0e269634c4f	.	ZW10	NM_004724	exon6	c.T698C	p.V233A	.	.	112	4	181	0	.	228
