Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AARS	16	bcgsc.ca	37	16	70302272	70302272	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AARS	NM_001605	exon8	c.A973G	p.R325G	.	.	70	4	100	0	.	91
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu	37	17	67218780	67218780	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCA10	NM_080282	exon5	c.93delA	p.K31fs	.	.	221	17	191	0	.	93
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	17	67285378	67285378	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCA5	NM_018672	exon13	c.1842delA	p.K614fs	.	.	199	12	219	0	.	93
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu	37	7	87079305	87079305	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB4	NM_018850	exon8	c.812delG	p.G271fs	.	.	299	18	306	0	.	96
ABCB7	22	hgsc.bcm.edu;broad.mit.edu	37	X	74282215	74282215	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB7	NM_004299	exon14	c.1886delC	p.P629fs	.	.	179	13	226	0	.	131
ABCB8	11194	hgsc.bcm.edu;broad.mit.edu	37	7	150742395	150742395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCB8	NM_007188	exon16	c.2116delA	p.K706fs	.	.	163	10	134	0	.	108
ABCC3	8714	ucsc.edu;bcgsc.ca	37	17	48753410	48753410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCC3	NM_003786	exon22	c.C3026T	p.S1009F	.	.	150	61	175	1	.	93
ABCF1	23	broad.mit.edu;bcgsc.ca	37	6	30545224	30545224	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCF1	NM_001090	exon2	c.112delA	p.K38fs	.	.	107	11	145	0	.	92
ABCF2	10061	hgsc.bcm.edu;broad.mit.edu	37	7	150923507	150923507	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABCF2	NM_005692	exon2	c.38delA	p.K13fs	.	.	202	13	206	0	.	90
ABHD3	171586	hgsc.bcm.edu;broad.mit.edu	37	18	19231648	19231648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD3	NM_138340	exon9	c.1134delT	p.F378fs	.	.	140	12	230	0	.	90
ABHD5	51099	hgsc.bcm.edu;broad.mit.edu	37	3	43753215	43753215	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ABHD5	NM_016006	exon4	c.521delT	p.I174fs	.	.	152	11	212	0	.	91
ACIN1	22985	hgsc.bcm.edu	37	14	23548798	23548798	+	Missense_Mutation	SNP	C	C	A	rs74036910	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G1920T	p.R640S	.	.	246	15	292	0	C|0.985;A|0.015	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549881	23549881	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G837A	p.E279E	.	.	129	12	187	0	.	156
ACIN1	22985	hgsc.bcm.edu	37	14	23549896	23549896	+	Silent	SNP	C	C	T	rs141522105	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	.	.	122	13	143	0	C|1.000;T|0.000	156
ACO1	48	hgsc.bcm.edu;broad.mit.edu	37	9	32418340	32418340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACO1	NM_002197	exon6	c.489delT	p.A163fs	.	.	195	12	255	0	.	226
ACP1	52	hgsc.bcm.edu;broad.mit.edu	37	2	277054	277054	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACP1	NM_007099	exon5	c.368delA	p.Q123fs	.	.	173	11	283	0	.	523
ACP6	51205	bcgsc.ca	37	1	147121978	147121978	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACP6	NM_016361	exon8	c.C945A	p.A315A	.	.	276	8	175	0	.	94
ACTN3	89	hgsc.bcm.edu;broad.mit.edu	37	11	66330266	66330266	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ACTN3	NM_001258371	exon20	c.2518-1G>-	.	.	.	228	15	316	0	.	90
ADAM10	102	bcgsc.ca	37	15	58957384	58957384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM10	NM_001110	exon5	c.A497G	p.K166R	.	.	99	4	134	0	.	227
ADAM7	8756	bcgsc.ca	37	8	24304727	24304727	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM7	NM_003817	exon3	c.185delA	p.E62fs	.	.	42	4	66	0	.	230
ADAM8	101	bcgsc.ca	37	10	135086836	135086836	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM8	NM_001164489	exon6	c.495delG	p.G165fs	.	.	64	6	73	0	.	90
ADAM8	101	hgsc.bcm.edu;broad.mit.edu	37	10	135089017	135089017	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAM8	NM_001164489	exon2	c.121delC	p.R41fs	.	.	248	16	299	0	.	90
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu	37	10	72500743	72500743	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS14	NM_139155	exon12	c.1758delC	p.S586fs	.	.	162	10	266	0	.	232
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu	37	5	128864241	128864241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS19	NM_133638	exon6	c.1181delA	p.E394fs	.	.	179	11	235	0	.	295
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu	37	4	73205236	73205236	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon5	c.836delA	p.N279fs	.	.	184	11	237	0	.	651
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu	37	4	73414286	73414286	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTS3	NM_014243	exon3	c.413delG	p.R138fs	.	.	178	11	262	0	.	651
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu	37	1	150531054	150531054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADAMTSL4	NM_019032	exon15	c.2488delC	p.P830fs	.	.	223	14	202	0	.	92
ADCY9	115	hgsc.bcm.edu;broad.mit.edu	37	16	4027526	4027526	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADCY9	NM_001116	exon9	c.2785delG	p.A929fs	.	.	203	13	307	0	.	139
ADGB	79747	bcgsc.ca	37	6	146987973	146987973	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_024694	exon7	c.A774G	p.R258R	.	.	93	4	135	0	.	.
ADH7	131	hgsc.bcm.edu;broad.mit.edu	37	4	100348965	100348965	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADH7	NM_001166504	exon5	c.589delT	p.S197fs	.	.	145	10	225	0	.	227
ADK	132	hgsc.bcm.edu;broad.mit.edu	37	10	76153962	76153962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ADK	NM_001202450	exon5	c.337delG	p.G113fs	.	.	139	10	239	0	.	228
AEBP2	121536	hgsc.bcm.edu;broad.mit.edu	37	12	19615541	19615541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AEBP2	NM_001114176	exon2	c.769delA	p.K257fs	.	.	148	11	229	0	.	23
AFAP1	60312	bcgsc.ca	37	4	7817785	7817785	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AFAP1	NM_001134647	exon8	c.864delT	p.V288fs	.	.	37	4	89	0	.	90
AFF1	4299	hgsc.bcm.edu;broad.mit.edu	37	4	88053466	88053466	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AFF1	NM_001166693	exon19	c.3217delA	p.K1073fs	.	.	221	14	330	0	.	289
AGAP6	414189	broad.mit.edu;bcgsc.ca	37	10	51768495	51768495	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AGAP6	NM_001077665	exon8	c.610delA	p.K204fs	.	.	389	14	615	0	.	1
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu	37	11	47721054	47721054	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AGBL2	NM_024783	exon8	c.638delA	p.K213fs	.	.	152	10	201	0	.	92
AGTPBP1	23287	bcgsc.ca	37	9	88292456	88292456	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AGTPBP1	NM_015239	exon6	c.331delT	p.S111fs	.	.	45	5	66	0	.	158
AHI1	54806	hgsc.bcm.edu;broad.mit.edu	37	6	135768254	135768254	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon12	c.1671delA	p.K557fs	.	.	162	10	209	0	.	227
AHI1	54806	hgsc.bcm.edu;broad.mit.edu	37	6	135811800	135811800	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHI1	NM_001134832	exon4	c.96delA	p.K32fs	.	.	215	13	277	0	.	227
AHNAK	79026	bcgsc.ca	37	11	62287175	62287175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHNAK	NM_001620	exon5	c.A14714G	p.K4905R	.	.	133	5	194	0	.	109
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu	37	11	62288928	62288928	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AHNAK	NM_001620	exon5	c.12961delA	p.M4321fs	.	.	163	10	259	0	.	109
AKAP9	10142	hgsc.bcm.edu	37	7	91732039	91732039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKAP9	NM_005751	exon46	c.11229delG	p.M3743fs	.	.	173	11	144	0	.	755
AKIP1	56672	hgsc.bcm.edu;broad.mit.edu	37	11	8938845	8938845	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKIP1	NM_020642	exon5	c.420delA	p.R140fs	.	.	163	11	211	0	.	492
AKNAD1	254268	bcgsc.ca	37	1	109369920	109369920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKNAD1	NM_152763	exon11	c.C1843A	p.Q615K	.	.	61	4	70	0	.	93
AKNAD1	254268	hgsc.bcm.edu;broad.mit.edu	37	1	109395035	109395035	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AKNAD1	NM_152763	exon2	c.252delA	p.K84fs	.	.	198	13	272	0	.	93
ALB	213	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74282071	74282071	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALB	NM_000477	exon10	c.1289+1G>A	.	.	.	113	43	118	0	.	96
ALDH3B1	221	bcgsc.ca	37	11	67789293	67789293	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	243	2	386	0	.	.
ALKBH5	54890	bcgsc.ca	37	17	18110264	18110264	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALKBH5	NM_017758	exon3	c.A987G	p.A329A	.	.	63	4	103	0	.	90
ALOX15	246	hgsc.bcm.edu	37	17	4539265	4539265	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALOX15	NM_001140	exon9	c.952-2A>T	.	.	.	73	4	56	0	.	229
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu	37	15	85406007	85406007	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALPK3	NM_020778	exon10	c.4877delC	p.S1626fs	.	.	176	11	228	0	.	337
ALPP	250	bcgsc.ca	37	2	233244588	233244588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ALPP	NM_001632	exon5	c.C599G	p.A200G	.	.	399	10	538	0	.	91
AMER3	205147	hgsc.bcm.edu;broad.mit.edu	37	2	131520663	131520663	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152698	exon2	c.1018delT	p.S340fs	.	.	158	10	223	0	.	.
AMOTL2	51421	hgsc.bcm.edu	37	3	134084701	134084701	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMOTL2	NM_016201	exon5	c.1237delC	p.Q413fs	.	.	154	11	221	0	.	135
AMY2A	279	bcgsc.ca	37	1	104166527	104166527	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMY2A	NM_000699	exon8	c.1141delG	p.V381X	.	.	1000	6	1287	0	.	92
AMY2A	279	broad.mit.edu;bcgsc.ca	37	1	104166529	104166529	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMY2A	NM_000699	exon8	c.1143delA	p.V381fs	.	.	973	12	1264	0	.	92
AMY2A	279	broad.mit.edu;bcgsc.ca	37	1	104166531	104166531	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AMY2A	NM_000699	exon8	c.1145delT	p.I382fs	.	.	953	9	1232	0	.	92
ANAPC5	51433	bcgsc.ca	37	12	121758212	121758212	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANAPC5	NM_016237	exon12	c.1491delT	p.F497fs	.	.	49	5	85	0	.	290
ANKH	56172	broad.mit.edu;bcgsc.ca	37	5	14871520	14871520	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKH	NM_054027	exon1	c.37delC	p.L13X	.	.	63	7	111	0	.	91
ANKHD1	54882	bcgsc.ca	37	5	139864753	139864753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKHD1	NM_017747	exon12	c.T1918C	p.S640P	.	.	142	5	166	0	.	185
ANKRD12	23253	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	18	9257082	9257082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD12	NM_015208	exon9	c.A3817G	p.I1273V	.	.	235	85	309	1	.	92
ANKRD13B	124930	bcgsc.ca	37	17	27920669	27920669	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD13B	NM_152345	exon1	c.30delG	p.K10fs	.	.	46	6	89	0	.	90
ANKRD16	54522	broad.mit.edu;bcgsc.ca	37	10	5922269	5922269	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD16	NM_001009941	exon6	c.920delA	p.N307fs	.	.	80	9	87	0	.	90
ANKRD20A4	728747	hgsc.bcm.edu	37	9	69386012	69386012	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098805	exon3	c.449delA	p.E150fs	.	.	164	10	217	0	.	.
ANKRD26	22852	bcgsc.ca	37	10	27322293	27322293	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD26	NM_014915	exon25	c.A3668G	p.Q1223R	.	.	81	4	110	0	.	138
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu	37	10	27337888	27337888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD26	NM_014915	exon17	c.1656delA	p.K552fs	.	.	200	15	273	0	.	138
ANKRD30A	91074	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	37508232	37508232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30A	NM_052997	exon34	c.C3424A	p.H1142N	.	.	164	51	244	0	.	161
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu	37	18	14848892	14848892	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKRD30B	NM_001145029	exon34	c.3002delA	p.Q1001fs	.	.	369	24	466	0	.	24
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANKS1A	NM_015245	exon7	c.953delC	p.T318fs	.	.	135	14	146	0	.	94
ANLN	54443	hgsc.bcm.edu	37	7	36447349	36447349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANLN	NM_018685	exon5	c.A880T	p.T294S	.	.	117	9	111	0	.	517
ANO1	55107	hgsc.bcm.edu;broad.mit.edu	37	11	70033894	70033894	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO1	NM_018043	exon26	c.2745delC	p.I915fs	.	.	182	11	234	0	.	47
ANO7	50636	hgsc.bcm.edu;broad.mit.edu	37	2	242129532	242129532	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ANO7	NM_001001666	exon2	c.216delC	p.S72fs	.	.	234	14	322	0	.	92
AP3B1	8546	bcgsc.ca	37	5	77563413	77563413	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AP3B1	NM_003664	exon2	c.A135G	p.E45E	.	.	32	3	34	0	.	90
AP4B1	10717	hgsc.bcm.edu;broad.mit.edu	37	1	114442999	114442999	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AP4B1	NM_006594	exon6	c.641delG	p.G214fs	.	.	191	13	244	0	.	93
APBA2	321	bcgsc.ca	37	15	29393815	29393815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBA2	NM_005503	exon9	c.A1352G	p.D451G	.	.	130	6	182	0	.	90
APBB1	322	hgsc.bcm.edu;broad.mit.edu	37	11	6416867	6416867	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1	NM_001164	exon14	c.2030delC	p.P677fs	.	.	140	11	169	0	.	136
APBB1IP	54518	hgsc.bcm.edu;broad.mit.edu	37	10	26802473	26802473	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APBB1IP	NM_019043	exon8	c.697delT	p.F233fs	.	.	157	10	272	0	.	652
APCS	325	bcgsc.ca	37	1	159558260	159558260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APCS	NM_001639	exon2	c.A434G	p.E145G	.	.	342	11	221	0	.	154
APEH	327	hgsc.bcm.edu;broad.mit.edu	37	3	49714427	49714427	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APEH	NM_001640	exon10	c.969delC	p.I323fs	.	.	195	13	280	0	.	91
APOB	338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	21235238	21235238	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOB	NM_000384	exon26	c.A4502G	p.Y1501C	.	.	192	78	260	0	.	175
APOF	319	hgsc.bcm.edu;broad.mit.edu	37	12	56755066	56755066	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001638	exon2	c.924delG	p.G308fs	.	.	196	12	254	0	.	.
APOH	350	hgsc.bcm.edu;broad.mit.edu	37	17	64212962	64212962	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOH	NM_000042	exon6	c.728delC	p.P243fs	.	.	200	12	197	0	.	90
APOL2	23780	hgsc.bcm.edu;broad.mit.edu	37	22	36623560	36623560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	APOL2	NM_030882	exon5	c.904delG	p.A302fs	.	.	167	10	269	0	.	90
AQP7P1	375719	bcgsc.ca	37	9	67273534	67273534	+	RNA	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	596	54	905	0	.	.
AQPEP	0	broad.mit.edu;bcgsc.ca	37	5	115327925	115327925	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_173800	exon5	c.1211delA	p.E404fs	.	.	100	10	152	0	.	.
ARAF	369	hgsc.bcm.edu;broad.mit.edu	37	X	47426094	47426094	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAF	NM_001256196	exon7	c.623delC	p.A208fs	.	.	265	17	385	0	.	1557
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu	37	4	36148950	36148950	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARAP2	NM_015230	exon19	c.3231delA	p.K1077fs	.	.	228	16	255	0	.	93
ARCN1	372	hgsc.bcm.edu;broad.mit.edu	37	11	118452086	118452086	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARCN1	NM_001655	exon2	c.129delA	p.G43fs	.	.	155	10	261	0	.	90
ARCN1	372	hgsc.bcm.edu;broad.mit.edu	37	11	118454608	118454608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARCN1	NM_001655	exon4	c.532delA	p.K178fs	.	.	256	16	386	0	.	90
ARFGEF1	10565	hgsc.bcm.edu;broad.mit.edu	37	8	68130371	68130371	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARFGEF1	NM_006421	exon31	c.4341delA	p.K1447fs	.	.	182	13	195	0	.	294
ARGLU1	55082	hgsc.bcm.edu;broad.mit.edu	37	13	107219922	107219922	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARGLU1	NM_018011	exon1	c.346delA	p.I116fs	.	.	140	10	201	0	.	90
ARHGAP17	55114	hgsc.bcm.edu;broad.mit.edu	37	16	24964264	24964264	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP17	NM_001006634	exon11	c.952delC	p.H318fs	.	.	163	10	237	0	.	227
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu	37	1	161017601	161017601	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP30	NM_001025598	exon12	c.3210delC	p.P1070fs	.	.	206	13	116	0	.	25
ARHGAP32	9743	bcgsc.ca	37	11	128839431	128839431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP32	NM_001142685	exon22	c.5635delG	p.A1879fs	.	.	57	6	83	0	.	231
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu	37	8	145759584	145759584	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP39	NM_025251	exon9	c.2617delG	p.V873fs	.	.	236	15	233	0	.	90
ARHGAP44	9912	bcgsc.ca	37	17	12799826	12799826	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP44	NM_014859	exon3	c.196delT	p.S66fs	.	.	33	4	64	0	.	90
ARHGAP5	394	hgsc.bcm.edu;broad.mit.edu	37	14	32560705	32560705	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP5	NM_001173	exon2	c.830delA	p.E277fs	.	.	172	13	220	0	.	94
ARHGAP6	395	bcgsc.ca	37	X	11682869	11682869	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGAP6	NM_006125	exon1	c.80delT	p.F27fs	.	.	37	4	67	0	.	227
ARHGEF12	23365	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120310884	120310884	+	Missense_Mutation	SNP	A	A	G	rs187048571		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARHGEF12	NM_015313	exon13	c.A1046G	p.H349R	.	.	149	56	253	0	A|0.999;G|0.001	661
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27092724	27092724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1A	NM_006015	exon9	c.2745delC	p.Y915fs	.	.	147	10	209	0	.	584
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu	37	6	157405954	157405954	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID1B	NM_020732	exon6	c.2196delG	p.P732fs	.	.	146	10	203	0	.	154
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu	37	14	58796746	58796746	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARID4A	NM_002892	exon11	c.765delA	p.L255fs	.	.	169	11	195	0	.	231
ARL6IP1	23204	bcgsc.ca	37	16	18806851	18806851	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARL6IP1	NM_015161	exon4	c.343delA	p.T115fs	.	.	32	3	68	0	.	90
ARMC12	221481	bcgsc.ca	37	6	35716646	35716646	+	In_Frame_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_145028	exon6	c.1103delA	p.X368X	.	.	46	5	86	0	.	.
ARPC2	10109	bcgsc.ca	37	2	219114634	219114634	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARPC2	NM_005731	exon9	c.868delA	p.K290fs	.	.	51	5	71	0	.	91
ARSG	22901	hgsc.bcm.edu;bcgsc.ca	37	17	66391287	66391287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ARSG	NM_001267727	exon10	c.G1165T	p.V389L	.	.	282	19	289	0	.	91
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu	37	6	100960741	100960741	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon40	c.6129delA	p.K2043fs	.	.	173	11	199	0	.	96
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu	37	6	101086535	101086535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASCC3	NM_006828	exon25	c.4064delA	p.K1355fs	.	.	165	11	234	0	.	96
ASIC5	51802	hgsc.bcm.edu;broad.mit.edu	37	4	156763391	156763391	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_017419	exon6	c.977delA	p.K326fs	.	.	185	11	217	0	.	.
ASPM	259266	bcgsc.ca	37	1	197062259	197062259	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ASPM	NM_018136	exon21	c.A9217G	p.R3073G	.	.	152	5	120	0	.	615
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu	37	2	24008915	24008915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_001242338	exon21	c.2955delA	p.K985fs	.	.	182	11	204	0	.	68
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	24042637	24042637	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD2B	NM_001242338	exon17	c.2247delA	p.K749fs	.	.	86	23	120	0	.	68
ATAD3B	83858	hgsc.bcm.edu;broad.mit.edu	37	1	1431107	1431107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATAD3B	NM_031921	exon16	c.1857delG	p.M619fs	.	.	227	14	327	0	.	44
ATF4	468	hgsc.bcm.edu;broad.mit.edu	37	22	39917489	39917489	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF4	NM_001675	exon1	c.39delG	p.V13fs	.	.	181	11	215	0	.	90
ATF6	22926	hgsc.bcm.edu;broad.mit.edu	37	1	161816357	161816357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF6	NM_007348	exon10	c.1306delA	p.K436fs	.	.	181	11	144	0	.	93
ATF7IP2	80063	hgsc.bcm.edu;broad.mit.edu	37	16	10551340	10551340	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATF7IP2	NM_024997	exon7	c.1306delA	p.K436fs	.	.	188	13	213	0	.	186
ATG13	9776	hgsc.bcm.edu;broad.mit.edu	37	11	46670721	46670721	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG13	NM_001142673	exon6	c.305delA	p.E102fs	.	.	194	12	266	0	.	68
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu	37	2	234178690	234178690	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG16L1	NM_017974	exon6	c.684delA	p.A228fs	.	.	249	15	288	0	.	90
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu	37	11	64673948	64673948	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATG2A	NM_015104	exon21	c.3041delC	p.P1014fs	.	.	164	10	203	0	.	69
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	26026311	26026311	+	Missense_Mutation	SNP	C	C	T	rs146522541	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP10A	NM_024490	exon2	c.G509A	p.R170H	.	.	146	60	216	0	C|1.000;T|0.000	139
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu	37	1	17312586	17312586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP13A2	NM_001141974	exon27	c.3371delC	p.P1124fs	.	.	160	10	248	0	.	93
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu	37	19	42479905	42479905	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP1A3	NM_001256214	exon16	c.2178delC	p.P726fs	.	.	169	12	219	0	.	92
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu	37	3	130694322	130694322	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP2C1	NM_001199181	exon17	c.1662delG	p.A554fs	.	.	182	11	303	0	.	91
ATP6AP1L	92270	hgsc.bcm.edu;broad.mit.edu	37	5	81613888	81613888	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATP6AP1L	NM_001017971	exon4	c.444delT	p.A148fs	.	.	159	10	237	0	.	90
ATXN1	6310	hgsc.bcm.edu;broad.mit.edu	37	6	16327823	16327823	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN1	NM_001128164	exon7	c.719delC	p.P240fs	.	.	183	11	190	0	.	93
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu	37	12	111926535	111926535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ATXN2	NM_002973	exon15	c.2465delA	p.N822fs	.	.	165	10	174	0	.	136
AWAT1	158833	broad.mit.edu;bcgsc.ca	37	X	69460121	69460121	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AWAT1	NM_001013579	exon7	c.968delA	p.Q323fs	.	.	92	9	126	0	.	133
AZIN1	51582	ucsc.edu	37	8	103841636	103841636	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	AZIN1	NM_015878	exon12	c.A1099G	p.S367G	.	.	317	2	254	1	.	90
B3GNT4	79369	hgsc.bcm.edu;broad.mit.edu	37	12	122691000	122691000	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	B3GNT4	NM_030765	exon3	c.202delC	p.P68fs	.	.	139	10	227	0	.	91
BACH1	571	hgsc.bcm.edu;broad.mit.edu	37	21	30701858	30701858	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH1	NM_206866	exon4	c.1620delT	p.D540fs	.	.	183	12	301	0	.	92
BACH2	60468	hgsc.bcm.edu;broad.mit.edu	37	6	90660586	90660586	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BACH2	NM_021813	exon7	c.1239delG	p.G413fs	.	.	152	10	187	0	.	231
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu	37	12	56994135	56994135	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BAZ2A	NM_013449	exon24	c.4748delT	p.L1583fs	.	.	131	10	172	0	.	22
BCAP31	10134	hgsc.bcm.edu;broad.mit.edu	37	X	152967544	152967544	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCAP31	NM_001139457	exon7	c.821delA	p.N274fs	.	.	142	10	212	0	.	130
BCAS1	8537	broad.mit.edu;bcgsc.ca	37	20	52611595	52611595	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCAS1	NM_003657	exon6	c.883delG	p.V295fs	.	.	61	7	99	0	.	652
BCL2L11	10018	broad.mit.edu;bcgsc.ca	37	2	111886248	111886248	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL2L11	NM_207002	exon4	c.259delT	p.F87fs	.	.	63	7	67	0	.	1083
BCL9	607	hgsc.bcm.edu;broad.mit.edu	37	1	147091647	147091647	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9	NM_004326	exon8	c.1686delC	p.L562fs	.	.	163	10	122	0	.	707
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu	37	11	118779099	118779099	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCL9L	NM_182557	exon2	c.292delC	p.Q98fs	.	.	172	11	280	0	.	229
BCORL1	63035	bcgsc.ca	37	X	129173222	129173222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCORL1	NM_021946	exon9	c.T4583C	p.L1528P	.	.	22	3	35	0	.	294
BCR	613	bcgsc.ca	37	22	23613764	23613764	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BCR	NM_021574	exon6	c.1906delA	p.K636fs	.	.	47	6	80	0	.	1349
BGN	633	bcgsc.ca	37	X	152772292	152772292	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BGN	NM_001711	exon6	c.681delC	p.L227fs	.	.	50	5	74	0	.	193
BHLHA15	168620	hgsc.bcm.edu;broad.mit.edu	37	7	97841927	97841927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BHLHA15	NM_177455	exon1	c.306delC	p.I102fs	.	.	211	13	219	0	.	90
BIN1	274	hgsc.bcm.edu;broad.mit.edu	37	2	127821169	127821169	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BIN1	NM_139345	exon9	c.752delA	p.N251fs	.	.	156	10	200	0	.	655
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu	37	13	103508419	103508419	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001204425	exon13	c.1847delA	p.E616fs	.	.	335	21	553	0	.	.
BIVM-ERCC5	0	bcgsc.ca	37	13	103504518	103504518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001204425	exon10	c.G1501C	p.G501R	.	.	154	6	170	0	.	.
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu	37	4	79768365	79768365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BMP2K	NM_017593	exon6	c.692delC	p.A231fs	.	.	159	14	245	0	.	383
BNIP2	663	hgsc.bcm.edu;broad.mit.edu	37	15	59970126	59970126	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BNIP2	NM_004330	exon5	c.819delA	p.K273fs	.	.	205	13	259	0	.	228
BPTF	2186	hgsc.bcm.edu;broad.mit.edu	37	17	65870959	65870959	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BPTF	NM_004459	exon4	c.1687delA	p.K563fs	.	.	215	13	183	0	.	94
BRAP	8315	hgsc.bcm.edu;broad.mit.edu	37	12	112082345	112082345	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRAP	NM_006768	exon12	c.1437delA	p.K479fs	.	.	187	13	242	0	.	710
BRCA1	672	hgsc.bcm.edu;broad.mit.edu	37	17	41219686	41219686	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007300	exon17	c.5076delA	p.K1692fs	.	.	117	10	146	0	.	3415
BRCA1	672	hgsc.bcm.edu;broad.mit.edu	37	17	41251836	41251836	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA1	NM_007298	exon6	c.503delA	p.K168fs	.	.	158	11	237	0	.	3415
BRCA2	675	bcgsc.ca	37	13	32911166	32911166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRCA2	NM_000059	exon11	c.T2674C	p.F892L	.	.	148	6	160	0	.	3153
BRD7P3	23629	ucsc.edu	37	6	118823601	118823601	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	57	23	65	0	.	.
BRIX1	55299	hgsc.bcm.edu;broad.mit.edu	37	5	34925376	34925376	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRIX1	NM_018321	exon10	c.838delA	p.K280fs	.	.	143	10	181	0	.	90
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu	37	11	1477640	1477640	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BRSK2	NM_001256630	exon17	c.1869delG	p.T623fs	.	.	147	10	215	0	.	333
BST2	684	hgsc.bcm.edu;broad.mit.edu	37	19	17516225	17516225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BST2	NM_004335	exon1	c.160delC	p.R54fs	.	.	173	11	207	0	.	93
BTBD8	284697	hgsc.bcm.edu;broad.mit.edu	37	1	92568057	92568057	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTBD8	NM_183242	exon3	c.375delA	p.I125fs	.	.	150	12	181	0	.	91
BTG3	10950	hgsc.bcm.edu;broad.mit.edu	37	21	18981340	18981340	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTG3	NM_006806	exon2	c.123delA	p.K41fs	.	.	167	11	155	0	.	226
BTRC	8945	hgsc.bcm.edu;broad.mit.edu	37	10	103310472	103310472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	BTRC	NM_033637	exon14	c.1673delT	p.V558fs	.	.	211	15	275	0	.	659
C10orf120	399814	hgsc.bcm.edu;broad.mit.edu	37	10	124457833	124457833	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C10orf120	NM_001010912	exon3	c.424delA	p.I142fs	.	.	140	10	133	0	.	91
C10orf137	26098	bcgsc.ca	37	10	127409886	127409886	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C10orf137	NM_015608	exon2	c.A222G	p.K74K	.	.	150	5	225	0	.	590
C12orf39	80763	hgsc.bcm.edu	37	12	21684129	21684129	+	In_Frame_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf39	NM_030572	exon6	c.351delA	p.X117X	.	.	155	10	246	0	.	90
C12orf40	283461	bcgsc.ca	37	12	40076861	40076861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf40	NM_001031748	exon8	c.A1135G	p.R379G	.	.	46	4	56	0	.	96
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu	37	12	40041671	40041671	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C12orf40	NM_001031748	exon6	c.462delT	p.S154fs	.	.	222	15	311	0	.	96
C16orf70	80262	broad.mit.edu;bcgsc.ca	37	16	67174471	67174471	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C16orf70	NM_025187	exon10	c.853delT	p.F285fs	.	.	67	7	101	0	.	70
C16orf71	146562	hgsc.bcm.edu;broad.mit.edu	37	16	4797357	4797357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C16orf71	NM_139170	exon9	c.1294delA	p.K432fs	.	.	193	12	302	0	.	68
C16orf89	146556	bcgsc.ca	37	16	5106185	5106185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C16orf89	NM_001098514	exon5	c.G632A	p.G211E	.	.	140	5	238	0	.	92
C17orf66	256957	hgsc.bcm.edu;broad.mit.edu	37	17	34195732	34195732	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf66	NM_152781	exon1	c.15delA	p.K5fs	.	.	114	10	161	0	.	155
C17orf75	64149	hgsc.bcm.edu;broad.mit.edu	37	17	30660500	30660500	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C17orf75	NM_022344	exon9	c.911delT	p.L304X	.	.	224	16	235	0	.	23
C1orf131	128061	hgsc.bcm.edu;broad.mit.edu	37	1	231362561	231362561	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C1orf131	NM_152379	exon5	c.617delA	p.K206fs	.	.	220	16	125	0	.	91
C1orf141	400757	broad.mit.edu;bcgsc.ca	37	1	67591562	67591562	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C1orf141	NM_001276352	exon4	c.106delA	p.T36fs	.	.	76	9	100	0	.	91
C1orf228	339541	hgsc.bcm.edu;broad.mit.edu	37	1	45169781	45169781	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145636	exon6	c.660delC	p.H220fs	.	.	150	9	232	0	.	.
C1QTNF9B	387911	broad.mit.edu;bcgsc.ca	37	13	24465819	24465819	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C1QTNF9B	NM_001007537	exon3	c.611delT	p.F204fs	.	.	416	20	478	0	.	22
C2CD4C	126567	hgsc.bcm.edu	37	19	408210	408210	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C2CD4C	NM_001136263	exon2	c.152delT	p.F51fs	.	.	298	20	310	0	.	46
C2CD5	9847	hgsc.bcm.edu	37	12	22671015	22671015	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon8	c.857delC	p.P286fs	.	.	164	10	221	0	.	.
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu	37	12	22666279	22666279	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014802	exon9	c.987delG	p.G329fs	.	.	165	11	182	0	.	.
C3orf20	84077	bcgsc.ca	37	3	14755573	14755573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3orf20	NM_032137	exon8	c.T1220C	p.I407T	.	.	218	6	294	0	.	94
C3orf38	285237	hgsc.bcm.edu;broad.mit.edu	37	3	88205437	88205437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3orf38	NM_173824	exon3	c.642delC	p.S214fs	.	.	143	10	190	0	.	90
C3P1	388503	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10157808	10157808	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C3P1	.	.	.	.	.	.	218	63	371	0	.	90
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu	37	5	37153894	37153894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C5orf42	NM_023073	exon41	c.8159delA	p.N2720fs	.	.	164	10	180	0	.	94
C9orf131	138724	hgsc.bcm.edu;broad.mit.edu	37	9	35042287	35042287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf131	NM_001040410	exon1	c.36delG	p.K12fs	.	.	150	11	172	0	.	90
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu	37	9	114453859	114453859	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	C9orf84	NM_173521	exon25	c.4206delT	p.F1402fs	.	.	173	11	229	0	.	92
CA5A	763	broad.mit.edu;bcgsc.ca	37	16	87960512	87960512	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CA5A	NM_001739	exon2	c.182delG	p.G61fs	.	.	62	8	111	0	.	90
CAB39	51719	hgsc.bcm.edu;broad.mit.edu	37	2	231657931	231657931	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAB39	NM_001130849	exon4	c.283delA	p.K95fs	.	.	177	15	272	0	.	226
CACNA1F	778	bcgsc.ca	37	X	49081292	49081292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNA1F	NM_005183	exon14	c.G1841T	p.G614V	.	.	117	6	144	0	.	176
CACNB2	783	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18439889	18439889	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNB2	NM_201596	exon2	c.T198C	p.N66N	.	.	127	48	169	0	.	154
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24358078	24358078	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CACNG3	NM_006539	exon2	c.235delA	p.K79fs	.	.	112	11	174	0	.	90
CACUL1	143384	hgsc.bcm.edu;broad.mit.edu	37	10	120514243	120514243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_153810	exon1	c.32delG	p.G11fs	.	.	287	19	482	0	.	.
CALD1	800	hgsc.bcm.edu;broad.mit.edu	37	7	134618168	134618168	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALD1	NM_033138	exon5	c.648delA	p.T216fs	.	.	143	10	111	0	.	226
CALML6	163688	hgsc.bcm.edu;broad.mit.edu	37	1	1848432	1848432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CALML6	NM_138705	exon5	c.418delG	p.G140fs	.	.	126	10	148	0	.	90
CAMK2A	815	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	149629865	149629865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMK2A	NM_171825	exon11	c.C824A	p.S275Y	.	.	80	26	106	0	.	333
CAMTA1	23261	bcgsc.ca	37	1	6845617	6845617	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAMTA1	NM_015215	exon1	c.27delG	p.L9fs	.	.	33	3	82	0	.	520
CAND2	23066	bcgsc.ca	37	3	12848824	12848824	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAND2	NM_001162499	exon3	c.A232C	p.K78Q	.	.	210	7	333	0	.	72
CAND2	23066	bcgsc.ca	37	3	12856858	12856858	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAND2	NM_001162499	exon8	c.C1225G	p.P409A	.	.	309	10	431	1	.	72
CAPN12	147968	bcgsc.ca	37	19	39224414	39224414	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPN12	NM_144691	exon18	c.T1886C	p.F629S	.	.	213	6	282	0	.	91
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu	37	12	75692472	75692472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CAPS2	NM_032606	exon12	c.1096delT	p.Y366fs	.	.	173	11	235	0	.	92
CASC4	113201	hgsc.bcm.edu;broad.mit.edu	37	15	44624241	44624241	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC4	NM_138423	exon4	c.541delA	p.K181fs	.	.	189	12	183	0	.	91
CASC5	57082	hgsc.bcm.edu;broad.mit.edu	37	15	40913467	40913467	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC5	NM_170589	exon11	c.1083delT	p.N361fs	.	.	141	10	178	0	.	660
CASC5	57082	hgsc.bcm.edu;broad.mit.edu	37	15	40920324	40920324	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CASC5	NM_170589	exon12	c.5511delA	p.I1837fs	.	.	174	11	275	0	.	660
CATSPERD	257062	bcgsc.ca	37	19	5778518	5778518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152784	exon22	c.C2228T	p.T743I	.	.	329	9	490	1	.	.
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu	37	19	14024365	14024365	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1A	NM_017721	exon6	c.662delC	p.A221fs	.	.	158	10	217	0	.	90
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu	37	19	14031457	14031457	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1A	NM_017721	exon13	c.1444delC	p.P482fs	.	.	182	11	213	0	.	90
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu	37	1	52822693	52822693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CC2D1B	NM_032449	exon16	c.1876delA	p.M626fs	.	.	215	13	284	0	.	92
CCDC109B	55013	bcgsc.ca	37	4	110608709	110608709	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC109B	NM_017918	exon8	c.T972C	p.C324C	.	.	146	5	187	0	.	90
CCDC126	90693	hgsc.bcm.edu;broad.mit.edu	37	7	23650955	23650955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC126	NM_138771	exon3	c.21delA	p.R7fs	.	.	230	16	165	0	.	70
CCDC138	165055	bcgsc.ca	37	2	109489998	109489998	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC138	NM_144978	exon14	c.A1785G	p.Q595Q	.	.	72	4	115	1	.	90
CCDC138	165055	hgsc.bcm.edu;broad.mit.edu	37	2	109473308	109473308	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC138	NM_144978	exon13	c.1575delA	p.G525fs	.	.	138	11	231	0	.	90
CCDC141	285025	bcgsc.ca	37	2	179839801	179839801	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC141	NM_173648	exon4	c.A509G	p.H170R	.	.	70	4	107	0	.	78
CCDC144A	9720	bcgsc.ca	37	17	16676005	16676005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014695	exon17	c.4233delT	p.P1411fs	.	.	948	42	1260	4	.	.
CCDC144A	9720	hgsc.bcm.edu	37	17	16638176	16638176	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014695	exon12	c.2591delA	p.Q864fs	.	.	175	13	184	0	.	.
CCDC144B	284047	bcgsc.ca	37	17	18498059	18498059	+	RNA	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC144B	.	.	.	.	.	.	240	3	133	4	.	70
CCDC144B	284047	ucsc.edu;bcgsc.ca	37	17	18498058	18498058	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC144B	.	.	.	.	.	.	243	32	137	2	.	70
CCDC144C	348254	bcgsc.ca	37	17	20297499	20297499	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	167	7	217	0	.	.
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu	37	4	24824159	24824159	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC149	NM_173463	exon11	c.1002delA	p.K334fs	.	.	277	18	356	0	.	68
CCDC169	728591	hgsc.bcm.edu;broad.mit.edu	37	13	36805370	36805370	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144981	exon8	c.605delA	p.K202fs	.	.	219	14	334	0	.	.
CCDC169-SOHLH2	100526761	hgsc.bcm.edu;broad.mit.edu	37	13	36764122	36764122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198910	exon11	c.833delA	p.K278fs	.	.	171	11	218	0	.	.
CCDC174	51244	hgsc.bcm.edu;broad.mit.edu	37	3	14708332	14708332	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_016474	exon7	c.602delA	p.E201fs	.	.	156	10	230	0	.	.
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu	37	18	30846924	30846924	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001105528	exon13	c.1365delA	p.K455fs	.	.	226	17	280	0	.	.
CCDC18	343099	bcgsc.ca	37	1	93672724	93672724	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC18	NM_206886	exon9	c.T978C	p.N326N	.	.	239	6	286	1	.	138
CCDC38	120935	hgsc.bcm.edu;broad.mit.edu	37	12	96275288	96275288	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC38	NM_182496	exon11	c.965delT	p.L322X	.	.	199	13	246	0	.	91
CCDC66	285331	hgsc.bcm.edu	37	3	56650051	56650051	+	Missense_Mutation	SNP	A	A	T	rs74463118		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC66	NM_001141947	exon13	c.A1813T	p.T605S	.	.	84	1	129	0	.	135
CCDC73	493860	broad.mit.edu;bcgsc.ca	37	11	32739625	32739625	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC73	NM_001008391	exon3	c.A204G	p.E68E	.	.	45	5	63	0	.	91
CCDC79	283847	hgsc.bcm.edu;broad.mit.edu	37	16	66824575	66824575	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001136505	exon5	c.194delA	p.N65fs	.	.	238	16	286	0	.	.
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu	37	3	112357154	112357154	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC80	NM_199511	exon2	c.1599delA	p.K533fs	.	.	180	11	228	0	.	92
CCDC88A	55704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55536323	55536323	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC88A	NM_018084	exon24	c.T4147G	p.F1383V	.	.	195	83	187	0	.	94
CCDC89	220388	hgsc.bcm.edu;broad.mit.edu	37	11	85397087	85397087	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCDC89	NM_152723	exon1	c.87delA	p.K29fs	.	.	180	11	237	0	.	90
CCNK	8812	broad.mit.edu;bcgsc.ca	37	14	99976646	99976646	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001099402	exon11	c.1270delC	p.P424fs	.	.	57	7	108	0	.	.
CCNT2	905	hgsc.bcm.edu;broad.mit.edu	37	2	135712007	135712007	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCNT2	NM_058241	exon9	c.1982delT	p.V661fs	.	.	210	13	266	0	.	417
CCR5	1234	bcgsc.ca	37	3	46414409	46414409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCR5	NM_000579	exon3	c.T16C	p.S6P	.	.	84	4	107	0	.	993
CCT7	10574	hgsc.bcm.edu;broad.mit.edu	37	2	73471802	73471802	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCT7	NM_006429	exon6	c.577delA	p.K193fs	.	.	171	11	241	0	.	90
CCT8	10694	hgsc.bcm.edu;broad.mit.edu	37	21	30439316	30439316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CCT8	NM_006585	exon5	c.458delA	p.N153fs	.	.	262	16	321	0	.	90
CD109	135228	hgsc.bcm.edu	37	6	74502402	74502402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD109	NM_133493	exon23	c.T2755C	p.Y919H	.	.	99	4	106	0	.	155
CD207	50489	hgsc.bcm.edu	37	2	71062836	71062836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD207	NM_015717	exon1	c.G71A	p.R24Q	.	.	248	18	385	0	.	46
CD248	57124	bcgsc.ca	37	11	66084174	66084174	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD248	NM_020404	exon1	c.325delG	p.D109fs	.	.	55	5	114	0	.	154
CD40	958	hgsc.bcm.edu;broad.mit.edu	37	20	44747014	44747014	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD40	NM_152854	exon1	c.32delG	p.W11fs	.	.	172	11	248	0	.	659
CD83	9308	hgsc.bcm.edu;broad.mit.edu	37	6	14131848	14131848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD83	NM_004233	exon3	c.251delC	p.A84fs	.	.	145	11	210	0	.	90
CD97	976	hgsc.bcm.edu	37	19	14508727	14508727	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CD97	NM_078481	exon8	c.799delC	p.P267fs	.	.	175	12	186	0	.	570
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu	37	5	54424346	54424346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC20B	NM_001170402	exon7	c.797delA	p.N266fs	.	.	171	11	265	0	.	90
CDC27	996	hgsc.bcm.edu;broad.mit.edu	37	17	45209674	45209674	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC27	NM_001114091	exon15	c.1998delA	p.K666fs	.	.	115	10	121	0	.	291
CDC34	997	hgsc.bcm.edu;broad.mit.edu	37	19	532070	532070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC34	NM_004359	exon1	c.139delG	p.G47fs	.	.	138	10	225	0	.	226
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu	37	14	103429414	103429414	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC42BPB	NM_006035	exon20	c.2805delA	p.K935fs	.	.	176	12	244	0	.	581
CDC42EP1	11135	hgsc.bcm.edu	37	22	37964414	37964414	+	Missense_Mutation	SNP	C	C	A	rs77417880	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDC42EP1	NM_152243	exon3	c.C763A	p.P255T	.	.	109	29	182	0	C|0.933;A|0.067	90
CDH10	1008	hgsc.bcm.edu;broad.mit.edu	37	5	24509876	24509876	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDH10	NM_006727	exon7	c.1055delA	p.N352fs	.	.	119	10	149	0	.	253
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu	37	7	105658335	105658335	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDHR3	NM_152750	exon12	c.1470delC	p.L490fs	.	.	135	11	141	0	.	23
CDK12	51755	hgsc.bcm.edu;broad.mit.edu	37	17	37681026	37681026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK12	NM_016507	exon12	c.3195delT	p.T1065fs	.	.	157	10	228	0	.	1055
CDK8	1024	hgsc.bcm.edu;broad.mit.edu	37	13	26923240	26923240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDK8	NM_001260	exon3	c.236delT	p.I79fs	.	.	184	11	254	0	.	1023
CDKN2A	1029	bcgsc.ca	37	9	21970911	21970911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CDKN2A,NS,carcinoma,0	CDKN2A	NM_000077	exon2	c.447delA	p.E149fs	.	.	40	4	97	0	.	23992
CDON	50937	broad.mit.edu;bcgsc.ca	37	11	125864895	125864895	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDON	NM_016952	exon13	c.2415delT	p.F805fs	.	.	66	7	136	0	.	158
CDV3	55573	hgsc.bcm.edu;broad.mit.edu	37	3	133306780	133306780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CDV3	NM_017548	exon5	c.667delA	p.K223fs	.	.	271	17	330	0	.	90
CEACAM6	4680	bcgsc.ca	37	19	42265890	42265890	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEACAM6	NM_002483	exon4	c.C717T	p.G239G	.	.	114	7	188	0	.	91
CELP	1057	bcgsc.ca	37	9	135960226	135960226	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CELP	NR_001275	exon3	c.276-1G>-	.	.	.	167	5	243	0	.	46
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu	37	4	68374713	68374713	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CENPC1	NM_001812	exon10	c.1723delA	p.T575fs	.	.	206	13	213	0	.	205
CENPI	2491	hgsc.bcm.edu;broad.mit.edu	37	X	100375427	100375427	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CENPI	NM_006733	exon6	c.628delA	p.K210fs	.	.	252	18	255	0	.	130
CEP112	201134	bcgsc.ca	37	17	64023643	64023643	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP112	NM_001199165	exon16	c.T1632C	p.H544H	.	.	316	10	213	0	.	90
CEP128	145508	hgsc.bcm.edu;broad.mit.edu	37	14	81227952	81227952	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon16	c.2382delA	p.K794fs	.	.	176	12	238	0	.	91
CEP128	145508	hgsc.bcm.edu;broad.mit.edu	37	14	81307070	81307070	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP128	NM_152446	exon9	c.805delG	p.A269fs	.	.	180	11	213	0	.	91
CEP135	9662	hgsc.bcm.edu;broad.mit.edu	37	4	56841104	56841104	+	Frame_Shift_Del	DEL	A	A	-	rs34965077		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP135	NM_025009	exon11	c.1442delA	p.E481fs	.	.	141	10	179	0	.	94
CEP152	22995	broad.mit.edu;bcgsc.ca	37	15	49097806	49097806	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP152	NM_014985	exon2	c.41delA	p.N14fs	.	.	70	7	142	0	.	70
CEP152	22995	hgsc.bcm.edu;broad.mit.edu	37	15	49061255	49061255	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP152	NM_014985	exon14	c.1806delA	p.K602fs	.	.	149	10	145	0	.	70
CEP290	80184	broad.mit.edu;bcgsc.ca	37	12	88524079	88524079	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CEP290	NM_025114	exon9	c.635delA	p.N212fs	.	.	100	10	109	0	.	96
CERKL	375298	hgsc.bcm.edu;broad.mit.edu	37	2	182430832	182430832	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CERKL	NM_001030311	exon4	c.630delG	p.G210fs	.	.	267	17	320	0	.	228
CFDP1	10428	hgsc.bcm.edu;broad.mit.edu	37	16	75445767	75445767	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFDP1	NM_006324	exon4	c.486delA	p.K162fs	.	.	141	10	207	0	.	91
CFH	3075	hgsc.bcm.edu;broad.mit.edu	37	1	196697534	196697534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CFH	NM_000186	exon15	c.2295delA	p.L765fs	.	.	191	12	137	0	.	566
CHD1	1105	hgsc.bcm.edu;broad.mit.edu	37	5	98232103	98232103	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD1	NM_001270	exon11	c.1537delA	p.T513fs	.	.	169	11	207	0	.	274
CHD2	1106	broad.mit.edu;bcgsc.ca	37	15	93510566	93510566	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD2	NM_001271	exon17	c.2012delG	p.W671fs	.	.	58	8	93	0	.	229
CHD6	84181	hgsc.bcm.edu;broad.mit.edu	37	20	40033271	40033271	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon37	c.8110delG	p.E2704fs	.	.	156	10	194	0	.	238
CHD6	84181	hgsc.bcm.edu;broad.mit.edu	37	20	40084446	40084446	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHD6	NM_032221	exon19	c.3003delT	p.F1001fs	.	.	203	13	277	0	.	238
CHORDC1	26973	hgsc.bcm.edu;broad.mit.edu	37	11	89935591	89935591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHORDC1	NM_012124	exon11	c.981delA	p.K327fs	.	.	262	16	355	0	.	90
CHPF2	54480	hgsc.bcm.edu;broad.mit.edu	37	7	150932283	150932283	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHPF2	NM_019015	exon2	c.413delG	p.R138fs	.	.	187	12	185	0	.	91
CHPF	79586	hgsc.bcm.edu;broad.mit.edu	37	2	220405010	220405010	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHPF	NM_024536	exon4	c.1423delC	p.Q475fs	.	.	215	15	319	0	.	90
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu	37	2	175622346	175622346	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHRNA1	NM_001039523	exon5	c.367delA	p.I123fs	.	.	180	11	254	0	.	518
CHRNA9	55584	bcgsc.ca	37	4	40356423	40356423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHRNA9	NM_017581	exon5	c.T1326G	p.N442K	.	.	132	5	186	0	.	96
CHUK	1147	hgsc.bcm.edu;broad.mit.edu	37	10	101964874	101964874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CHUK	NM_001278	exon12	c.1314delA	p.K438fs	.	.	175	12	207	0	.	961
CIB3	117286	bcgsc.ca	37	19	16275656	16275656	+	Missense_Mutation	SNP	C	C	T	rs200526470		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIB3	NM_054113	exon5	c.G415A	p.G139R	.	.	229	11	240	0	.	131
CIB3	117286	hgsc.bcm.edu;broad.mit.edu	37	19	16275654	16275654	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIB3	NM_054113	exon5	c.417delG	p.G139fs	.	.	229	16	245	0	.	131
CIC	23152	hgsc.bcm.edu;broad.mit.edu	37	19	42794469	42794469	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIC	NM_015125	exon10	c.1549delC	p.P517fs	.	.	225	14	271	0	.	591
CIR1	9541	bcgsc.ca	37	2	175213497	175213497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CIR1	NM_004882	exon10	c.A1081G	p.T361A	.	.	102	4	129	0	.	153
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu	37	1	86957003	86957003	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLCA1	NM_001285	exon9	c.1413delT	p.A471fs	.	.	170	13	243	0	.	91
CLCNKA	1187	bcgsc.ca	37	1	16354394	16354394	+	Missense_Mutation	SNP	C	C	T	rs34188929	bycluster;byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLCNKA	NM_004070	exon9	c.C860T	p.A287V	.	.	858	178	1113	228	C|0.240;T|0.760	91
CLCNKB	1188	bcgsc.ca	37	1	16374534	16374534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLCNKB	NM_000085	exon5	c.A493C	p.K165Q	.	.	229	8	262	0	.	91
CLEC4A	50856	hgsc.bcm.edu;broad.mit.edu	37	12	8289428	8289428	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLEC4A	NM_016184	exon5	c.495delG	p.V165fs	.	.	176	11	275	0	.	90
CLECL1	160365	hgsc.bcm.edu	37	12	9885713	9885713	+	Missense_Mutation	SNP	A	A	T	rs200639830		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLECL1	NM_001267701	exon1	c.T148A	p.Y50N	.	.	105	11	138	0	.	90
CLIP1	6249	bcgsc.ca	37	12	122773037	122773037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLIP1	NM_001247997	exon21	c.3646delA	p.R1216fs	.	.	55	6	96	0	.	155
CLIP3	25999	hgsc.bcm.edu;broad.mit.edu	37	19	36523228	36523228	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLIP3	NM_001199570	exon1	c.32delC	p.P11fs	.	.	151	11	154	0	.	94
CLPX	10845	bcgsc.ca	37	15	65449246	65449246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLPX	NM_006660	exon9	c.A1082G	p.D361G	.	.	90	4	153	0	.	90
CLSTN2	64084	bcgsc.ca	37	3	140167537	140167537	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLSTN2	NM_022131	exon6	c.A964G	p.K322E	.	.	144	7	197	1	.	157
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu	37	12	7301639	7301639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLSTN3	NM_014718	exon13	c.1919delC	p.A640fs	.	.	141	11	163	0	.	153
CLTCL1	8218	hgsc.bcm.edu	37	22	19189005	19189005	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CLTCL1	NM_001835	exon24	c.3602-2A>G	.	.	.	98	8	144	0	.	230
CNDP2	55748	bcgsc.ca	37	18	72186182	72186182	+	Splice_Site	SNP	A	A	C	rs199640601		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNDP2	NM_018235	exon11	c.1211-2A>C	.	.	.	79	7	82	0	.	93
CNGA2	1260	bcgsc.ca	37	X	150909308	150909308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNGA2	NM_005140	exon5	c.G417T	p.W139C	.	.	112	6	115	0	.	193
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu	37	2	97427712	97427712	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNNM4	NM_020184	exon1	c.976delT	p.F326fs	.	.	198	13	217	0	.	154
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	58621151	58621151	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT1	NM_206999	exon6	c.387delT	p.F129fs	.	.	124	12	126	0	.	95
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu	37	12	70747643	70747643	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT2	NM_001199302	exon17	c.1571delG	p.R524fs	.	.	180	11	265	0	.	226
CNOT4	4850	hgsc.bcm.edu;broad.mit.edu	37	7	135106990	135106990	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT4	NM_001190850	exon3	c.287delA	p.N96fs	.	.	242	16	250	0	.	90
CNOT6L	246175	bcgsc.ca	37	4	78652675	78652675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNOT6L	NM_144571	exon9	c.A890G	p.K297R	.	.	97	4	144	0	.	67
CNP	1267	hgsc.bcm.edu;broad.mit.edu	37	17	40123969	40123969	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNP	NM_033133	exon3	c.736delC	p.P246fs	.	.	193	12	326	0	.	226
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu	37	3	74385778	74385778	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN3	NM_020872	exon11	c.1396delA	p.I466X	.	.	221	14	231	0	.	137
CNTN5	53942	broad.mit.edu;bcgsc.ca	37	11	99715828	99715828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN5	NM_001243270	exon5	c.411delA	p.R137fs	.	.	71	7	124	0	.	366
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu	37	3	1427450	1427450	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTN6	NM_014461	exon20	c.2673delC	p.S891fs	.	.	153	11	208	0	.	345
CNTNAP3B	728577	broad.mit.edu;bcgsc.ca	37	9	43815911	43815911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001201380	exon5	c.665delT	p.L222fs	.	.	1444	24	1762	0	.	.
CNTNAP3B	728577	broad.mit.edu;bcgsc.ca	37	9	43815914	43815914	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001201380	exon5	c.668delA	p.H223fs	.	.	1449	17	1780	0	.	.
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu	37	2	125261880	125261880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTNAP5	NM_130773	exon8	c.1071delT	p.T357fs	.	.	175	12	223	0	.	524
CNTRL	11064	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123935974	123935974	+	Missense_Mutation	SNP	G	G	A	rs151059757	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CNTRL	NM_007018	exon40	c.G6706A	p.A2236T	.	.	80	28	109	0	G|1.000;A|0.000	661
COG2	22796	hgsc.bcm.edu;broad.mit.edu	37	1	230800279	230800279	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG2	NM_007357	exon5	c.431delA	p.E144fs	.	.	272	18	176	0	.	90
COG6	57511	bcgsc.ca	37	13	40251685	40251685	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG6	NM_001145079	exon5	c.T509C	p.L170P	.	.	91	4	112	0	.	227
COG6	57511	hgsc.bcm.edu;broad.mit.edu	37	13	40273702	40273702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COG6	NM_001145079	exon13	c.1231delA	p.K411fs	.	.	133	12	159	0	.	227
COL11A1	1301	hgsc.bcm.edu	37	1	103364549	103364549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon55	c.4124delG	p.G1375fs	.	.	171	13	174	0	.	586
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu	37	1	103461421	103461421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A1	NM_080629	exon28	c.2375delA	p.K792fs	.	.	163	10	232	0	.	586
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu	37	6	33136315	33136315	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL11A2	NM_080680	exon54	c.3941delC	p.P1314fs	.	.	119	10	144	0	.	95
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu	37	1	32134408	32134408	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon50	c.3244delG	p.E1082fs	.	.	134	10	193	0	.	98
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu	37	1	32136240	32136240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL16A1	NM_001856	exon49	c.3158delC	p.P1053fs	.	.	193	12	187	0	.	98
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu	37	1	86196292	86196292	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon60	c.5082delA	p.K1694fs	.	.	165	10	209	0	.	94
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu	37	1	86313395	86313395	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL24A1	NM_152890	exon39	c.3415delA	p.I1139fs	.	.	178	11	211	0	.	94
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu	37	7	7480482	7480482	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon21	c.1661delG	p.G554fs	.	.	156	10	79	0	.	93
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu	37	7	7559697	7559697	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL28A1	NM_001037763	exon6	c.809delA	p.N270fs	.	.	232	15	141	0	.	93
COL2A1	1280	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	48387630	48387630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL2A1	NM_001844	exon14	c.G886A	p.D296N	.	.	170	70	253	0	.	92
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu	37	5	74675197	74675197	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL4A3BP	NM_001130105	exon18	c.2233delA	p.T745fs	.	.	181	11	215	0	.	226
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu	37	21	47401838	47401838	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A1	NM_001848	exon1	c.74delC	p.T25fs	.	.	207	13	305	0	.	91
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu	37	2	238285701	238285701	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL6A3	NM_004369	exon7	c.2784delT	p.F928fs	.	.	155	11	235	0	.	526
COL7A1	1294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48608294	48608294	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL7A1	NM_000094	exon94	c.G7272A	p.R2424R	.	.	173	74	210	0	.	160
COL9A3	1299	bcgsc.ca	37	20	61458625	61458625	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COL9A3	NM_001853	exon16	c.825delC	p.F275fs	.	.	39	4	75	0	.	514
COMMD5	28991	bcgsc.ca	37	8	146076709	146076709	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COMMD5	NM_001081004	exon2	c.G15A	p.G5G	.	.	375	19	420	0	.	91
COPB1	1315	bcgsc.ca	37	11	14510085	14510085	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPB1	NM_001144062	exon6	c.652delA	p.T218fs	.	.	58	6	95	0	.	91
COPS2	9318	hgsc.bcm.edu;broad.mit.edu	37	15	49436467	49436467	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPS2	NM_004236	exon3	c.203delG	p.G68fs	.	.	154	12	241	0	.	227
COPS4	51138	bcgsc.ca	37	4	83989633	83989633	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	COPS4	NM_016129	exon9	c.1045delA	p.N349fs	.	.	64	6	103	0	.	226
CORO2A	7464	hgsc.bcm.edu;broad.mit.edu	37	9	100890927	100890927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CORO2A	NM_003389	exon9	c.1042delA	p.S348fs	.	.	178	12	206	0	.	230
CORO7	79585	bcgsc.ca	37	16	4410485	4410485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CORO7	NM_024535	exon20	c.T1982C	p.V661A	.	.	132	7	155	0	.	90
CPOX	1371	hgsc.bcm.edu;broad.mit.edu	37	3	98312028	98312028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPOX	NM_000097	exon1	c.321delG	p.G107fs	.	.	104	10	112	0	.	90
CPQ	10404	bcgsc.ca	37	8	97847359	97847359	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_016134	exon3	c.G592T	p.G198W	.	.	276	10	279	0	.	.
CPSF2	53981	hgsc.bcm.edu;broad.mit.edu	37	14	92604666	92604666	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPSF2	NM_017437	exon7	c.636delA	p.R212fs	.	.	356	23	439	0	.	92
CPSF7	79869	bcgsc.ca	37	11	61196700	61196700	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CPSF7	NM_024811	exon2	c.A137G	p.E46G	.	.	87	4	91	0	.	90
CR1	1378	broad.mit.edu;bcgsc.ca	37	1	207697103	207697103	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CR1	NM_000573	exon5	c.635delC	p.S212fs	.	.	1383	24	1077	0	.	93
CREG2	200407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	102000039	102000039	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CREG2	NM_153836	exon2	c.567delC	p.P189fs	.	.	90	10	130	0	.	91
CROCCP2	84809	bcgsc.ca	37	1	16952994	16952994	+	RNA	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	348	8	397	0	.	.
CRYBB3	1417	hgsc.bcm.edu;broad.mit.edu	37	22	25603032	25603032	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBB3	NM_004076	exon6	c.489delA	p.L163fs	.	.	139	10	212	0	.	90
CRYBG3	131544	hgsc.bcm.edu;broad.mit.edu	37	3	97596406	97596406	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CRYBG3	NM_153605	exon4	c.6368delT	p.V2123fs	.	.	157	10	177	0	.	68
CSMD1	64478	bcgsc.ca	37	8	2815250	2815250	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CSMD1_ENST00000318252,NS,carcinoma,-1	CSMD1	NM_033225	exon63	c.9782delT	p.L3261X	.	.	60	6	191	0	.	86
CSNK1E	1454	bcgsc.ca	37	22	38690472	38690472	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CSNK1E	NM_001894	exon8	c.954delG	p.G318fs	.	.	21	4	47	0	.	1193
CSPP1	79848	broad.mit.edu;bcgsc.ca	37	8	68076631	68076631	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CSPP1	NM_024790	exon22	c.2701delA	p.K901fs	.	.	88	10	70	0	.	138
CSTF3	1479	hgsc.bcm.edu;broad.mit.edu	37	11	33121158	33121158	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CSTF3	NM_001326	exon11	c.932delA	p.K311fs	.	.	249	16	324	0	.	90
CTAG2	30848	hgsc.bcm.edu;broad.mit.edu	37	X	153880814	153880814	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CTAG2	NM_020994	exon2	c.361delG	p.A121fs	.	.	114	10	141	0	.	131
CTNNB1	1499	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	rs28931589	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CTNNB1,gallbladder,other,0	CTNNB1	NM_001098209	exon3	c.G101T	p.G34V	.	.	303	112	491	0	G|1.000;T|0.000	24361
CTSW	1521	bcgsc.ca	37	11	65649694	65649694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CTSW	NM_001335	exon4	c.T335C	p.V112A	.	.	130	5	194	0	.	90
CUX2	23316	hgsc.bcm.edu;broad.mit.edu	37	12	111785948	111785948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CUX2	NM_015267	exon22	c.4280delC	p.A1427fs	.	.	168	10	225	0	.	140
CWC15	51503	bcgsc.ca	37	11	94699509	94699509	+	RNA	SNP	A	A	T	rs75272814		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	187	19	428	1	.	.
CWC22	57703	broad.mit.edu;bcgsc.ca	37	2	180819699	180819699	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CWC22	NM_020943	exon15	c.1521delT	p.F507fs	.	.	93	9	107	0	.	90
CXCL12	6387	hgsc.bcm.edu;broad.mit.edu	37	10	44871433	44871433	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CXCL12	NM_001033886	exon4	c.314delA	p.K105fs	.	.	227	15	301	0	.	226
CXorf36	79742	bcgsc.ca	37	X	45051113	45051113	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CXorf36	NM_176819	exon2	c.G381A	p.R127R	.	.	84	4	121	0	.	130
CXorf49	100130361	hgsc.bcm.edu	37	X	70984231	70984231	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145140	exon1	c.958delG	p.G320fs	.	.	198	12	198	0	.	.
CXorf64	100130613	bcgsc.ca	37	X	125955359	125955359	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001122716	exon2	c.T738C	p.C246C	.	.	128	5	186	0	.	.
CXXC11	285093	hgsc.bcm.edu;broad.mit.edu	37	2	242814476	242814476	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_173821	exon2	c.769delG	p.G257fs	.	.	156	10	225	0	.	.
CYFIP2	26999	hgsc.bcm.edu	37	5	156721860	156721860	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.C276A	p.A92A	.	.	231	16	330	0	.	22
CYFIP2	26999	hgsc.bcm.edu;bcgsc.ca	37	5	156721861	156721861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.A277T	p.I93F	.	.	237	24	327	0	.	22
CYFIP2	26999	hgsc.bcm.edu;bcgsc.ca	37	5	156721863	156721863	+	Silent	SNP	T	T	C	rs200051515		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYFIP2	NM_001037332	exon4	c.T279C	p.I93I	.	.	236	1	324	0	.	22
CYLD	1540	hgsc.bcm.edu;broad.mit.edu	37	16	50811827	50811827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	CYLD,NS,adnexal_tumour,+1	CYLD	NM_015247	exon9	c.1113delA	p.S371fs	.	.	152	10	168	0	.	2444
CYP26B1	56603	hgsc.bcm.edu;broad.mit.edu	37	2	72359653	72359653	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP26B1	NM_019885	exon6	c.1242delC	p.P414fs	.	.	205	14	293	0	.	92
CYP2S1	29785	hgsc.bcm.edu;broad.mit.edu	37	19	41700601	41700601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP2S1	NM_030622	exon2	c.330delT	p.T110fs	.	.	229	14	332	0	.	91
CYP4B1	1580	hgsc.bcm.edu;broad.mit.edu	37	1	47284400	47284400	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4B1	NM_001099772	exon12	c.1453delC	p.P485fs	.	.	168	10	247	0	.	92
CYP4F8	11283	bcgsc.ca	37	19	15730499	15730499	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4F8	.	.	.	.	.	.	206	14	313	1	.	90
CYP4V2	285440	hgsc.bcm.edu;broad.mit.edu	37	4	187130116	187130116	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	CYP4V2	NM_207352	exon9	c.1188delT	p.P396fs	.	.	164	10	241	0	.	90
DAB2	1601	hgsc.bcm.edu;broad.mit.edu	37	5	39377168	39377168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DAB2	NM_001343	exon12	c.1721delG	p.G574fs	.	.	192	12	253	0	.	227
DACH1	1602	hgsc.bcm.edu;broad.mit.edu	37	13	72147000	72147000	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DACH1	NM_080759	exon4	c.1277delC	p.P426fs	.	.	150	10	209	0	.	135
DCAF8L2	347442	mdanderson.org	37	X	27765408	27765408	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCAF8L2	NM_001136533	exon1	c.G396A	p.E132E	.	.	24	8	39	0	.	42
DCT	1638	hgsc.bcm.edu;broad.mit.edu	37	13	95118899	95118899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCT	NM_001129889	exon3	c.609delC	p.P203fs	.	.	202	12	298	0	.	94
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu	37	12	57928844	57928844	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DCTN2	NM_001261412	exon5	c.364delA	p.I122fs	.	.	210	13	291	0	.	23
DDB2	1643	hgsc.bcm.edu;broad.mit.edu	37	11	47259439	47259439	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDB2	NM_000107	exon8	c.1075delC	p.P359fs	.	.	125	10	235	0	.	971
DDX20	11218	bcgsc.ca	37	1	112305374	112305374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX20	NM_007204	exon9	c.A1180G	p.M394V	.	.	79	4	103	0	.	227
DDX31	64794	bcgsc.ca	37	9	135537696	135537696	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX31	NM_022779	exon3	c.675delA	p.K225fs	.	.	41	4	82	0	.	226
DDX31	64794	hgsc.bcm.edu;broad.mit.edu	37	9	135537941	135537941	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX31	NM_022779	exon2	c.532delA	p.M178fs	.	.	190	14	232	0	.	226
DDX39A	10212	bcgsc.ca	37	19	14523406	14523406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX39A	NM_005804	exon3	c.293delT	p.F98fs	.	.	39	5	69	0	.	226
DDX54	79039	bcgsc.ca	37	12	113623165	113623165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DDX54	NM_024072	exon1	c.92delG	p.G31fs	.	.	41	4	85	0	.	227
DENND2C	163259	hgsc.bcm.edu;broad.mit.edu	37	1	115144134	115144134	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DENND2C	NM_001256404	exon13	c.1810delT	p.S604fs	.	.	260	16	377	0	.	229
DENND6A	201627	hgsc.bcm.edu	37	3	57620465	57620465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152678	exon13	c.1164delA	p.K388fs	.	.	206	14	238	0	.	.
DGAT2L6	347516	bcgsc.ca	37	X	69424364	69424364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DGAT2L6	NM_198512	exon6	c.T857C	p.V286A	.	.	83	4	134	0	.	131
DHRS4L2	317749	bcgsc.ca	37	14	24470643	24470643	+	Missense_Mutation	SNP	T	T	G	rs62000762	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHRS4L2	NM_198083	exon6	c.T582G	p.N194K	.	.	612	96	815	62	T|0.999;G|0.001	91
DHRS4L2	317749	broad.mit.edu;bcgsc.ca	37	14	24470690	24470690	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHRS4L2	NM_198083	exon6	c.629delT	p.L210fs	.	.	499	7	694	0	.	91
DHX29	54505	hgsc.bcm.edu;broad.mit.edu	37	5	54565369	54565369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX29	NM_019030	exon21	c.3166delA	p.I1056fs	.	.	182	11	244	0	.	229
DHX34	9704	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47880440	47880440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DHX34	NM_014681	exon13	c.T2683A	p.C895S	.	.	76	30	134	0	.	231
DIDO1	11083	bcgsc.ca	37	20	61525539	61525539	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DIDO1	NM_080797	exon12	c.T2580C	p.V860V	.	.	67	4	84	0	.	96
DIP2C	22982	bcgsc.ca	37	10	429978	429978	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	DIP2C,colon,carcinoma,-1	DIP2C	NM_014974	exon16	c.G1865T	p.G622V	.	.	99	4	154	0	.	156
DIRC2	84925	bcgsc.ca	37	3	122514376	122514376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DIRC2	NM_032839	exon1	c.A337G	p.K113E	.	.	36	4	54	0	.	90
DIXDC1	85458	ucsc.edu;bcgsc.ca	37	11	111853106	111853106	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DIXDC1	.	.	.	.	.	.	118	3	159	0	.	91
DLG2	1740	hgsc.bcm.edu;broad.mit.edu	37	11	83183770	83183770	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLG2	NM_001142699	exon23	c.2344delA	p.I782X	.	.	165	10	220	0	.	96
DLGAP2	9228	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1497492	1497492	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP2	NM_004745	exon2	c.C633T	p.P211P	.	.	61	42	103	0	.	22
DLGAP5	9787	bcgsc.ca	37	14	55619312	55619312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon16	c.A2117C	p.N706T	.	.	61	4	87	0	.	92
DLGAP5	9787	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55647496	55647496	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DLGAP5	NM_014750	exon6	c.T581C	p.V194A	.	.	126	48	172	0	.	92
DMD	1756	hgsc.bcm.edu;broad.mit.edu	37	X	31198546	31198546	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMD	NM_004006	exon69	c.10027delT	p.S3343fs	.	.	222	14	263	0	.	265
DMKN	93099	ucsc.edu;bcgsc.ca	37	19	36000834	36000834	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMKN	NM_001126058	exon7	c.G1017A	p.G339G	.	.	81	35	174	1	.	155
DMXL2	23312	bcgsc.ca	37	15	51857323	51857323	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DMXL2	NM_001174117	exon4	c.326delT	p.L109X	.	.	161	17	171	0	.	99
DNAAF1	123872	broad.mit.edu;bcgsc.ca	37	16	84209716	84209716	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAAF1	NM_178452	exon11	c.1876delA	p.K626fs	.	.	103	11	146	0	.	73
DNAH11	8701	bcgsc.ca	37	7	21856152	21856152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH11	.	.	.	.	.	.	434	13	404	1	.	146
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu	37	3	57456205	57456205	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH12	NM_178504	exon16	c.2070delT	p.F690fs	.	.	230	14	264	0	.	47
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu	37	5	13864702	13864702	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH5	NM_001369	exon28	c.4400delT	p.L1467fs	.	.	153	10	217	0	.	182
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84784866	84784866	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH6	NM_001370	exon11	c.1610delT	p.I537fs	.	.	91	9	85	0	.	69
DNAH7	56171	hgsc.bcm.edu	37	2	196681467	196681467	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH7	NM_018897	exon51	c.9646delT	p.S3216fs	.	.	351	21	422	0	.	102
DNAH8	1769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38690855	38690855	+	Silent	SNP	G	G	A	rs180723141	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAH8	NM_001206927	exon2	c.G270A	p.P90P	.	.	118	44	168	0	G|0.997;C|0.003	615
DNAJB12	54788	hgsc.bcm.edu;broad.mit.edu	37	10	74104834	74104834	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJB12	NM_017626	exon2	c.287delC	p.P96fs	.	.	156	10	167	0	.	226
DNAJC10	54431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	183582853	183582865	+	Frame_Shift_Del	DEL	TTGAAAAGGATCA	TTGAAAAGGATCA	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TTGAAAAGGATCA	TTGAAAAGGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC10	NM_001271581	exon3	c.40_52del	p.14_18del	.	.	80	0	158	0	.	273
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu	37	3	132175174	132175174	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC13	NM_015268	exon10	c.1028delG	p.W343fs	.	.	165	10	247	0	.	272
DNAJC7	7266	hgsc.bcm.edu;broad.mit.edu	37	17	40141477	40141477	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNAJC7	NM_003315	exon7	c.698delT	p.F233fs	.	.	171	11	245	0	.	227
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu	37	11	6568378	6568378	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DNHD1	NM_144666	exon21	c.6209delA	p.Q2070fs	.	.	164	12	226	0	.	24
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111368605	111368605	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK4	NM_014705	exon52	c.5626delC	p.L1876fs	.	.	141	11	104	0	.	26
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111448882	111448882	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK4	NM_014705	exon30	c.3161delA	p.N1054fs	.	.	256	16	293	0	.	26
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu	37	19	11363499	11363499	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOCK6	NM_020812	exon3	c.268delC	p.R90fs	.	.	167	11	232	0	.	93
DOK2	9046	bcgsc.ca	37	8	21768276	21768276	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOK2	NM_003974	exon4	c.526delG	p.E176fs	.	.	33	3	71	0	.	226
DOPEY1	23033	bcgsc.ca	37	6	83839069	83839069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DOPEY1	NM_015018	exon16	c.A2183G	p.D728G	.	.	122	5	168	0	.	155
DPP6	1804	hgsc.bcm.edu;broad.mit.edu	37	7	154263979	154263979	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPP6	NM_130797	exon5	c.605delT	p.L202fs	.	.	139	10	117	0	.	652
DPPA2P3	100128023	bcgsc.ca	37	3	193711499	193711499	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	114	6	158	0	.	.
DPY19L2P1	554236	bcgsc.ca	37	7	35189842	35189842	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	390	19	271	0	.	.
DPYD	1806	hgsc.bcm.edu;broad.mit.edu	37	1	98144679	98144679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DPYD	NM_000110	exon8	c.822delA	p.K274fs	.	.	141	10	138	0	.	278
DSCAML1	57453	bcgsc.ca	37	11	117392098	117392098	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSCAML1	NM_020693	exon6	c.A1140G	p.T380T	.	.	118	5	161	1	.	159
DSG3	1830	hgsc.bcm.edu;broad.mit.edu	37	18	29037066	29037066	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSG3	NM_001944	exon3	c.195delA	p.S65fs	.	.	128	11	162	0	.	98
DSP	1832	hgsc.bcm.edu;broad.mit.edu	37	6	7574928	7574928	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon17	c.2336delA	p.Q779fs	.	.	134	10	216	0	.	518
DSP	1832	hgsc.bcm.edu;broad.mit.edu	37	6	7585185	7585185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DSP	NM_004415	exon24	c.7690delA	p.K2564fs	.	.	186	13	212	0	.	518
DST	667	hgsc.bcm.edu;broad.mit.edu	37	6	56340988	56340988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DST	NM_015548	exon73	c.13954delC	p.Q4652fs	.	.	156	11	198	0	.	523
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu	37	15	45446158	45446158	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DUOX1	NM_017434	exon28	c.3534delC	p.L1178fs	.	.	152	11	182	0	.	142
DYNC1H1	1778	bcgsc.ca	37	14	102514166	102514166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC1H1	NM_001376	exon73	c.T13019C	p.I4340T	.	.	67	4	89	0	.	98
DYNC1I1	1780	hgsc.bcm.edu;broad.mit.edu	37	7	95442635	95442635	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC1I1	NM_004411	exon4	c.351delG	p.L117fs	.	.	138	10	123	0	.	94
DYNC2H1	79659	broad.mit.edu;bcgsc.ca	37	11	103173862	103173862	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC2H1	NM_001080463	exon77	c.11157delT	p.R3719fs	.	.	67	7	77	0	.	68
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu	37	11	103090657	103090657	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DYNC2H1	NM_001377	exon56	c.8846delA	p.Q2949fs	.	.	258	17	272	0	.	68
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu	37	3	137787113	137787113	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	DZIP1L	NM_173543	exon13	c.1712delC	p.P571fs	.	.	192	13	259	0	.	92
ECHDC1	55862	hgsc.bcm.edu	37	6	127652056	127652056	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECHDC1	NM_001139510	exon2	c.136delA	p.T46fs	.	.	143	10	187	0	.	90
ECHDC3	79746	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	11805436	11805436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECHDC3	NM_024693	exon5	c.C805G	p.L269V	.	.	14	8	19	0	.	90
ECT2L	345930	bcgsc.ca	37	6	139159510	139159510	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ECT2L	NM_001195037	exon4	c.A201G	p.S67S	.	.	155	5	213	0	.	22
EDARADD	128178	hgsc.bcm.edu;broad.mit.edu	37	1	236590742	236590742	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDARADD	NM_145861	exon4	c.211delA	p.K71fs	.	.	238	21	137	0	.	90
EDC4	23644	hgsc.bcm.edu;broad.mit.edu	37	16	67917535	67917535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDC4	NM_014329	exon28	c.3914delT	p.V1305fs	.	.	148	11	173	0	.	92
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu	37	1	184680896	184680896	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EDEM3	NM_025191	exon15	c.1652delA	p.N551fs	.	.	163	11	130	0	.	91
EFHA2	286097	hgsc.bcm.edu;bcgsc.ca	37	8	16939226	16939226	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFHA2	NM_181723	exon5	c.671delT	p.L224fs	.	.	111	13	171	0	.	91
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	82512000	82512000	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EFTUD1	NM_024580	exon14	c.1604delT	p.L535fs	.	.	246	19	251	0	.	91
EGF	1950	bcgsc.ca	37	4	110925702	110925702	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EGF	NM_001963	exon22	c.A3215G	p.E1072G	.	.	73	4	117	0	.	524
EGR3	1960	bcgsc.ca	37	8	22550454	22550454	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EGR3	NM_004430	exon1	c.4delA	p.T2fs	.	.	31	5	94	0	.	90
EGR3	1960	broad.mit.edu;bcgsc.ca	37	8	22548364	22548364	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EGR3	NM_004430	exon2	c.786delC	p.P262fs	.	.	79	8	220	0	.	90
EHBP1	23301	hgsc.bcm.edu;broad.mit.edu	37	2	62991489	62991489	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHBP1	NM_001142616	exon4	c.251delT	p.L84fs	.	.	165	10	265	0	.	154
EHD2	30846	bcgsc.ca	37	19	48229399	48229399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHD2	NM_014601	exon4	c.T833C	p.L278P	.	.	48	4	65	0	.	92
EHMT1	79813	bcgsc.ca	37	9	140611475	140611475	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EHMT1	NM_001145527	exon3	c.A483G	p.K161K	.	.	54	4	69	0	.	154
EIF4E3	317649	bcgsc.ca	37	3	71743087	71743087	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EIF4E3	NM_001134651	exon5	c.A411G	p.T137T	.	.	33	4	46	0	.	90
EIF4EBP1	1978	bcgsc.ca	37	8	37914726	37914726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EIF4EBP1	NM_004095	exon2	c.273delG	p.M91fs	.	.	33	5	54	0	.	846
ELF4	2000	bcgsc.ca	37	X	129203337	129203337	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ELF4	NM_001421	exon8	c.1125delC	p.P375fs	.	.	58	6	92	0	.	659
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu	37	7	37172765	37172765	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ELMO1	NM_014800	exon14	c.1161delT	p.F387fs	.	.	175	11	143	0	.	96
EMC10	284361	bcgsc.ca	37	19	50983931	50983931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_175063	exon5	c.G496T	p.G166W	.	.	73	5	93	0	.	.
EMC10	284361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50983927	50983927	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_175063	exon5	c.492delC	p.H164fs	.	.	78	10	97	0	.	.
EME1	146956	hgsc.bcm.edu	37	17	48452975	48452975	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EME1	NM_152463	exon2	c.406delA	p.K136fs	.	.	174	11	259	0	.	227
EML4	27436	bcgsc.ca	37	2	42510019	42510019	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EML4	NM_019063	exon8	c.A848G	p.K283R	.	.	128	5	173	0	.	3734
EN2	2020	bcgsc.ca	37	7	155251258	155251258	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EN2	NM_001427	exon1	c.186delC	p.H62fs	.	.	58	5	82	0	.	90
ENAM	10117	hgsc.bcm.edu;broad.mit.edu	37	4	71501578	71501578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENAM	NM_031889	exon7	c.501delC	p.F167fs	.	.	142	11	211	0	.	93
ENG	2022	hgsc.bcm.edu;broad.mit.edu	37	9	130592021	130592021	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENG	NM_001114753	exon3	c.305delA	p.N102fs	.	.	158	10	206	0	.	90
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu	37	17	77075666	77075666	+	Frame_Shift_Del	DEL	T	T	-	rs113488517		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENGASE	NM_001042573	exon4	c.512delT	p.I171fs	.	.	160	10	159	0	-|1.000;|0.000	91
ENO1	2023	hgsc.bcm.edu;broad.mit.edu	37	1	8926380	8926380	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENO1	NM_001428	exon7	c.625delG	p.D209fs	.	.	118	10	190	0	.	652
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu	37	20	25203522	25203522	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ENTPD6	NM_001247	exon12	c.1094delA	p.Q365fs	.	.	152	10	229	0	.	90
EP400NL	347918	hgsc.bcm.edu	37	12	132589038	132589038	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	33	10	33	0	.	.
EPDR1	54749	bcgsc.ca	37	7	37988590	37988590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPDR1	NM_017549	exon2	c.G418T	p.G140W	.	.	191	6	136	0	.	91
EPHA5	2044	hgsc.bcm.edu;broad.mit.edu	37	4	66467573	66467573	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA5	NM_004439	exon3	c.696delA	p.K232fs	.	.	129	10	179	0	.	1430
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu	37	1	22927800	22927800	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPHA8	NM_020526	exon16	c.2737delC	p.P913fs	.	.	226	14	275	0	.	1380
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu	37	8	144946981	144946981	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPPK1	NM_031308	exon1	c.441delG	p.G147fs	.	.	172	11	192	0	.	25
EPS8L2	64787	hgsc.bcm.edu;broad.mit.edu	37	11	721655	721655	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPS8L2	NM_022772	exon10	c.859delA	p.K287fs	.	.	249	15	315	0	.	91
EPX	8288	hgsc.bcm.edu;broad.mit.edu	37	17	56274371	56274371	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EPX	NM_000502	exon7	c.873delC	p.C291fs	.	.	191	12	179	0	.	92
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu	37	17	27182148	27182148	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERAL1	NM_005702	exon1	c.96delT	p.P32fs	.	.	177	13	219	0	.	91
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu	37	5	96139154	96139154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERAP1	NM_001198541	exon2	c.476delT	p.F159fs	.	.	174	11	227	0	.	70
ERBB2IP	55914	hgsc.bcm.edu;broad.mit.edu	37	5	65374265	65374265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERBB2IP	NM_001253699	exon26	c.4167delT	p.S1389fs	.	.	217	13	310	0	.	653
ERF	2077	hgsc.bcm.edu;broad.mit.edu	37	19	42753385	42753385	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERF	NM_006494	exon4	c.879delG	p.G293fs	.	.	165	11	189	0	.	658
ERI1	90459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	8865648	8865648	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERI1	NM_153332	exon2	c.C277G	p.L93V	.	.	50	31	77	0	.	68
ERN2	10595	hgsc.bcm.edu;broad.mit.edu	37	16	23717673	23717673	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ERN2	NM_033266	exon7	c.711delC	p.P237fs	.	.	167	12	212	0	.	322
ETV4	2118	hgsc.bcm.edu;broad.mit.edu	37	17	41605953	41605953	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ETV4	NM_001986	exon13	c.1389delC	p.P463fs	.	.	176	11	224	0	.	658
EVPL	2125	hgsc.bcm.edu;broad.mit.edu	37	17	74018287	74018287	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EVPL	NM_001988	exon6	c.628delC	p.Q210fs	.	.	164	10	130	0	.	93
EXD2	55218	bcgsc.ca	37	14	69676331	69676331	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001193361	exon2	c.144delG	p.L48fs	.	.	50	5	95	0	.	.
EXOC2	55770	hgsc.bcm.edu;broad.mit.edu	37	6	564874	564874	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOC2	NM_018303	exon14	c.1499delA	p.N500fs	.	.	262	16	377	0	.	662
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu	37	4	122723068	122723068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon2	c.153delA	p.G51fs	.	.	185	11	296	0	.	90
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu	37	4	122737569	122737569	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EXOSC9	NM_001034194	exon12	c.1253delT	p.I418fs	.	.	262	20	274	0	.	90
EYS	346007	bcgsc.ca	37	6	65016918	65016918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon30	c.T6136C	p.W2046R	.	.	64	4	80	0	.	660
EYS	346007	bcgsc.ca	37	6	66200485	66200485	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon6	c.862+2T>A	.	.	.	368	17	466	2	.	660
EYS	346007	hgsc.bcm.edu	37	6	66200486	66200486	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon6	c.862+1G>T	.	.	.	374	15	468	0	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu	37	6	65301367	65301367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142800	exon26	c.4393delG	p.A1465fs	.	.	157	10	268	0	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu	37	6	66054028	66054028	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	EYS	NM_001142801	exon10	c.1502delT	p.F501fs	.	.	172	11	218	0	.	660
F2R	2149	hgsc.bcm.edu;broad.mit.edu	37	5	76029269	76029269	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	F2R	NM_001992	exon2	c.1219delA	p.K407fs	.	.	203	13	327	0	.	93
F8	2157	bcgsc.ca	37	X	154157535	154157535	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	F8	NM_000132	exon14	c.4530delA	p.K1510fs	.	.	39	4	70	0	.	182
F8A2	474383	hgsc.bcm.edu	37	X	154687164	154687164	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001007523	exon1	c.1098delC	p.P366fs	.	.	398	29	481	0	.	.
FAAH2	158584	bcgsc.ca	37	X	57473418	57473418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAAH2	NM_174912	exon9	c.T1174C	p.W392R	.	.	155	5	196	0	.	133
FABP12	646486	hgsc.bcm.edu;broad.mit.edu	37	8	82441805	82441805	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FABP12	NM_001105281	exon2	c.114delA	p.K38fs	.	.	178	11	175	0	.	46
FAHD2A	51011	hgsc.bcm.edu;broad.mit.edu	37	2	96078466	96078466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAHD2A	NM_016044	exon7	c.836delC	p.T279fs	.	.	216	14	296	0	.	91
FAM115C	285966	broad.mit.edu;bcgsc.ca	37	7	143400355	143400355	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM115C	NM_173678	exon2	c.268delG	p.G90fs	.	.	542	24	493	0	.	68
FAM115C	285966	broad.mit.edu;bcgsc.ca	37	7	143400361	143400361	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM115C	NM_173678	exon2	c.274delC	p.P92fs	.	.	532	14	498	0	.	68
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu	37	2	203630172	203630172	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM117B	NM_173511	exon8	c.1455delA	p.P485fs	.	.	141	10	163	0	.	91
FAM118B	79607	hgsc.bcm.edu;broad.mit.edu	37	11	126120425	126120425	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM118B	NM_024556	exon5	c.364delT	p.F122fs	.	.	160	10	221	0	.	90
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu	37	6	170639584	170639584	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM120B	NM_032448	exon4	c.1963delG	p.G655fs	.	.	222	14	345	0	.	91
FAM122A	116224	hgsc.bcm.edu;broad.mit.edu	37	9	71395729	71395729	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM122A	NM_138333	exon1	c.649delT	p.F217fs	.	.	167	11	230	0	.	90
FAM122C	159091	bcgsc.ca	37	X	133988145	133988145	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM122C	NM_001170779	exon7	c.467delA	p.E156fs	.	.	55	5	99	0	.	130
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu	37	8	139151232	139151232	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM135B	NM_015912	exon18	c.3898delA	p.T1300fs	.	.	197	15	201	0	.	31
FAM160A2	84067	hgsc.bcm.edu;broad.mit.edu	37	11	6245706	6245706	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM160A2	NM_032127	exon2	c.41delG	p.G14fs	.	.	166	11	216	0	.	92
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu	37	10	15255681	15255681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM171A1	NM_001010924	exon8	c.1906delC	p.Q636fs	.	.	165	10	206	0	.	138
FAM171B	165215	bcgsc.ca	37	2	187559047	187559047	+	Silent	SNP	G	G	A	rs73979342		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM171B	NM_177454	exon1	c.G147A	p.Q49Q	.	.	97	2	143	0	G|0.500;A|0.500	141
FAM175B	23172	bcgsc.ca	37	10	126519940	126519940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM175B	NM_032182	exon8	c.A686G	p.K229R	.	.	85	4	94	0	.	186
FAM186A	121006	bcgsc.ca	37	12	50749223	50749223	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM186A	NM_001145475	exon4	c.A1392G	p.K464K	.	.	125	6	176	0	.	68
FAM194B	220081	hgsc.bcm.edu;broad.mit.edu	37	13	46154079	46154079	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM194B	NM_182542	exon7	c.950delA	p.K317fs	.	.	205	16	299	0	.	68
FAM20A	54757	hgsc.bcm.edu;broad.mit.edu	37	17	66538161	66538161	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM20A	NM_017565	exon7	c.1074delC	p.P358fs	.	.	176	11	155	0	.	90
FAM210A	125228	hgsc.bcm.edu;broad.mit.edu	37	18	13681751	13681751	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098801	exon3	c.326delA	p.K109fs	.	.	220	14	205	0	.	.
FAM21A	387680	bcgsc.ca	37	10	51859790	51859790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM21A	NM_001005751	exon17	c.1601delA	p.Q534fs	.	.	939	33	1272	2	.	69
FAM21B	55747	hgsc.bcm.edu	37	10	47929846	47929846	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM21B	NM_018232	exon19	c.1827delC	p.S609fs	.	.	36	10	24	0	.	23
FAM35A	54537	bcgsc.ca	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM35A	NM_019054	exon3	c.C719A	p.T240K	.	.	174	20	162	1	.	94
FAM35A	54537	broad.mit.edu;bcgsc.ca	37	10	88912443	88912443	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM35A	NM_019054	exon3	c.1332delT	p.C444fs	.	.	384	12	378	0	.	94
FAM45A	404636	bcgsc.ca	37	10	120896028	120896028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM45A	NM_207009	exon9	c.T943A	p.F315I	.	.	663	14	799	0	.	91
FAM47A	158724	bcgsc.ca	37	X	34149355	34149355	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM47A	NM_203408	exon1	c.1041delG	p.G347fs	.	.	50	5	69	0	.	134
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu	37	X	34961258	34961258	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM47B	NM_152631	exon1	c.310delT	p.F104fs	.	.	168	12	187	0	.	196
FAM63A	55793	hgsc.bcm.edu	37	1	150974245	150974245	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM63A	NM_001163258	exon4	c.611delC	p.P204fs	.	.	193	15	181	0	.	91
FAM69C	125704	hgsc.bcm.edu;broad.mit.edu	37	18	72113977	72113977	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM69C	NM_001044369	exon2	c.740delG	p.G247fs	.	.	133	10	226	0	.	68
FAM71A	149647	hgsc.bcm.edu;broad.mit.edu	37	1	212799568	212799568	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71A	NM_153606	exon1	c.1349delG	p.R450fs	.	.	142	12	108	0	.	94
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu	37	5	156592606	156592606	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM71B	NM_130899	exon1	c.574delG	p.D192fs	.	.	213	14	357	0	.	96
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	42	16	63	0	.	.
FAM71E2	284418	hgsc.bcm.edu	37	19	55869903	55869903	+	Missense_Mutation	SNP	T	T	G	rs28712579	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145402	exon9	c.A2333C	p.Q778P	.	.	42	19	58	0	C|1.000;|0.000	.
FAM73A	374986	broad.mit.edu;bcgsc.ca	37	1	78332059	78332059	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM73A	NM_001270384	exon14	c.1546delA	p.K516fs	.	.	66	7	100	0	.	91
FAM83B	222584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	54806060	54806060	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM83B	NM_001010872	exon5	c.2291delC	p.S764fs	.	.	77	10	128	0	.	96
FAM86C2P	645332	broad.mit.edu	37	11	67560590	67560590	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	115	12	116	1	.	.
FAM8A1	51439	hgsc.bcm.edu	37	6	17608468	17608468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM8A1	NM_016255	exon5	c.1140delT	p.S380fs	.	.	173	11	213	0	.	90
FAM98A	25940	bcgsc.ca	37	2	33810709	33810709	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAM98A	NM_015475	exon7	c.776delC	p.P259fs	.	.	49	5	78	0	.	91
FANCE	2178	hgsc.bcm.edu	37	6	35425715	35425715	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FANCE	NM_021922	exon4	c.923delC	p.A308fs	.	.	150	10	173	0	.	661
FANCG	2189	hgsc.bcm.edu;broad.mit.edu	37	9	35078176	35078176	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FANCG	NM_004629	exon4	c.472delG	p.D158fs	.	.	172	11	275	0	.	724
FAP	2191	bcgsc.ca	37	2	163072435	163072435	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAP	NM_004460	exon10	c.T839C	p.V280A	.	.	106	5	133	1	.	93
FAP	2191	bcgsc.ca	37	2	163081047	163081047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAP	NM_004460	exon5	c.289delA	p.S97fs	.	.	53	5	79	0	.	93
FARP1	10160	hgsc.bcm.edu;broad.mit.edu	37	13	99092237	99092237	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FARP1	NM_005766	exon22	c.2456delG	p.W819fs	.	.	126	10	147	0	.	290
FASTK	10922	hgsc.bcm.edu;broad.mit.edu	37	7	150775131	150775131	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTK	NM_006712	exon5	c.874delC	p.L292fs	.	.	189	12	199	0	.	359
FASTKD1	79675	hgsc.bcm.edu;broad.mit.edu	37	2	170428277	170428277	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD1	NM_024622	exon2	c.263delA	p.N88fs	.	.	227	14	272	0	.	119
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu	37	5	7867919	7867919	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FASTKD3	NM_024091	exon2	c.278delA	p.N93fs	.	.	152	10	200	0	.	156
FAT1	2195	bcgsc.ca	37	4	187516976	187516976	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon26	c.13005delA	p.K4335fs	.	.	56	6	110	0	.	34
FAT1	2195	hgsc.bcm.edu	37	4	187510197	187510197	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon27	c.13316delC	p.P4439fs	.	.	233	15	228	0	.	34
FAT1	2195	hgsc.bcm.edu;broad.mit.edu	37	4	187541324	187541324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FAT1	NM_005245	exon10	c.6416delA	p.K2139fs	.	.	169	11	177	0	.	34
FBN1	2200	hgsc.bcm.edu;broad.mit.edu	37	15	48748935	48748935	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBN1	NM_000138	exon44	c.5321delC	p.P1774fs	.	.	161	11	209	0	.	92
FBP1	2203	hgsc.bcm.edu;broad.mit.edu	37	9	97369188	97369188	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBP1	NM_000507	exon5	c.614delA	p.K205fs	.	.	218	15	328	0	.	226
FBXL4	26235	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	99328458	99328458	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXL4	NM_012160	exon7	c.C1360A	p.Q454K	.	.	77	28	78	0	.	227
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu	37	2	48066828	48066828	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO11	NM_001190274	exon2	c.313delA	p.T105fs	.	.	129	10	186	0	.	659
FBXO36	130888	hgsc.bcm.edu	37	2	230841022	230841022	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO36	NM_174899	exon2	c.162delA	p.A54fs	.	.	151	10	219	0	.	227
FBXO44	93611	hgsc.bcm.edu;broad.mit.edu	37	1	11721342	11721342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO44	NM_183413	exon5	c.655delC	p.P219fs	.	.	149	11	239	0	.	227
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu	37	6	153296240	153296240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXO5	NM_012177	exon2	c.620delA	p.K207fs	.	.	150	11	243	0	.	658
FBXW11	23291	broad.mit.edu;bcgsc.ca	37	5	171337736	171337736	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FBXW11	NM_012300	exon3	c.213delA	p.K71fs	.	.	82	8	152	0	.	272
FCGBP	8857	bcgsc.ca	37	19	40368396	40368396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FCGBP	NM_003890	exon28	c.C12952A	p.R4318S	.	.	297	9	464	0	.	98
FEM1B	10116	hgsc.bcm.edu;broad.mit.edu	37	15	68582064	68582064	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FEM1B	NM_015322	exon2	c.368delC	p.T123fs	.	.	163	11	263	0	.	90
FERD3L	222894	hgsc.bcm.edu	37	7	19184746	19184746	+	Silent	SNP	C	C	T	rs199985178		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FERD3L	NM_152898	exon1	c.G240A	p.E80E	.	.	84	2	54	0	.	153
FERD3L	222894	hgsc.bcm.edu	37	7	19184752	19184752	+	Silent	SNP	C	C	T	rs73079402		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FERD3L	NM_152898	exon1	c.G234A	p.E78E	.	.	87	12	61	0	C|1.000;T|0.000	153
FERMT1	55612	bcgsc.ca	37	20	6065732	6065732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FERMT1	NM_017671	exon12	c.A1574G	p.K525R	.	.	287	10	360	0	.	495
FGF9	2254	hgsc.bcm.edu;broad.mit.edu	37	13	22246178	22246178	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGF9	NM_002010	exon1	c.127delG	p.G43fs	.	.	178	12	231	0	.	946
FGFR1OP	11116	bcgsc.ca	37	6	167413586	167413586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGFR1OP	NM_007045	exon2	c.141delG	p.E47fs	.	.	36	3	58	0	.	683
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu	37	4	1803669	1803669	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FGFR3	NM_001163213	exon7	c.847delC	p.P283fs	.	.	149	11	234	0	.	9542
FHAD1	114827	hgsc.bcm.edu;broad.mit.edu	37	1	15684625	15684625	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHAD1	NM_052929	exon20	c.2516delA	p.Q839fs	.	.	165	10	216	0	.	69
FHL1	2273	bcgsc.ca	37	X	135288588	135288588	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHL1	NM_001159701	exon2	c.C84T	p.G28G	.	.	119	6	161	0	.	130
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu	37	18	34320658	34320658	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FHOD3	NM_025135	exon18	c.3091delA	p.K1031fs	.	.	191	12	240	0	.	139
FIBCD1	84929	hgsc.bcm.edu;broad.mit.edu	37	9	133799700	133799700	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIBCD1	NM_001145106	exon4	c.636delG	p.G212fs	.	.	131	12	185	0	.	90
FIGF	2277	bcgsc.ca	37	X	15365316	15365316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIGF	NM_004469	exon6	c.A908G	p.K303R	.	.	83	4	115	0	.	131
FILIP1L	11259	hgsc.bcm.edu;broad.mit.edu	37	3	99568351	99568351	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FILIP1L	NM_182909	exon5	c.2169delA	p.K723fs	.	.	200	12	360	0	.	45
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu	37	4	54294251	54294251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FIP1L1	NM_030917	exon13	c.1075delT	p.F359fs	.	.	194	15	279	0	.	1083
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu	37	12	2907011	2907011	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FKBP4	NM_002014	exon3	c.367delC	p.P123fs	.	.	189	13	215	0	.	226
FLG	2312	hgsc.bcm.edu;broad.mit.edu	37	1	152286885	152286885	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FLG	NM_002016	exon3	c.477delA	p.K159fs	.	.	233	15	154	0	.	106
FLJ35390	0	ucsc.edu	37	7	44078881	44078881	+	RNA	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	80	12	38	0	.	.
FLT3	2322	hgsc.bcm.edu;broad.mit.edu	37	13	28626770	28626770	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FLT3	NM_004119	exon5	c.526delA	p.M176fs	.	.	156	10	176	0	.	42117
FMNL3	91010	hgsc.bcm.edu	37	12	50100871	50100871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FMNL3	NM_175736	exon1	c.93delC	p.P31fs	.	.	229	14	325	0	.	228
FN3KRP	79672	hgsc.bcm.edu;broad.mit.edu	37	17	80674691	80674691	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FN3KRP	NM_024619	exon1	c.60delG	p.S20fs	.	.	356	22	383	0	.	115
FNDC1	84624	bcgsc.ca	37	6	159655103	159655103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FNDC1	NM_032532	exon11	c.T3559G	p.F1187V	.	.	143	8	187	6	.	138
FNDC1	84624	hgsc.bcm.edu	37	6	159660797	159660797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FNDC1	NM_032532	exon14	c.A4429G	p.T1477A	.	.	69	6	85	0	.	138
FOXA1	3169	bcgsc.ca	37	14	38061910	38061910	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FOXA1	NM_004496	exon2	c.T79C	p.S27P	.	.	75	4	98	0	.	226
FOXD4L6	653404	broad.mit.edu;bcgsc.ca	37	9	69200538	69200538	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001085476	exon1	c.1075delC	p.H359fs	.	.	1492	23	2051	0	.	.
FOXI1	2299	hgsc.bcm.edu;broad.mit.edu	37	5	169533034	169533034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FOXI1	NM_012188	exon1	c.73delC	p.P25fs	.	.	284	17	413	0	.	229
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu	37	1	74901809	74901809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001112808	exon20	c.2121delT	p.D707fs	.	.	235	16	272	0	.	.
FREM2	341640	broad.mit.edu;bcgsc.ca	37	13	39261785	39261785	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FREM2	NM_207361	exon1	c.304delG	p.G102fs	.	.	71	9	105	0	.	100
FRG1B	284802	bcgsc.ca	37	20	29624070	29624070	+	RNA	SNP	G	G	A	rs79198850		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRG1B	.	.	.	.	.	.	403	45	309	21	.	22
FRMPD2	143162	broad.mit.edu	37	10	49448531	49448531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRMPD2	NM_001018071	exon6	c.A572G	p.E191G	.	.	61	4	122	0	.	153
FRMPD4	9758	broad.mit.edu;bcgsc.ca	37	X	12734765	12734765	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRMPD4	NM_014728	exon15	c.2187delG	p.E729fs	.	.	69	7	76	0	.	263
FRY	10129	hgsc.bcm.edu;broad.mit.edu	37	13	32722055	32722055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FRY	NM_023037	exon13	c.1363delT	p.F455fs	.	.	175	12	227	0	.	142
FSD1L	83856	hgsc.bcm.edu;broad.mit.edu	37	9	108234293	108234293	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_031919	exon4	c.352delA	p.K118fs	.	.	233	15	290	0	.	.
FUT11	170384	bcgsc.ca	37	10	75532307	75532307	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FUT11	NM_173540	exon1	c.216delG	p.A72fs	.	.	52	5	89	0	.	90
FYN	2534	hgsc.bcm.edu;broad.mit.edu	37	6	112021336	112021336	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	FYN	NM_002037	exon9	c.833delG	p.G278fs	.	.	169	12	196	0	.	1000
GABRG2	2566	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	161569294	161569294	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GABRG2	NM_198903	exon8	c.G1014A	p.K338K	.	.	167	63	240	0	.	95
GAD1	2571	hgsc.bcm.edu;broad.mit.edu	37	2	171715334	171715334	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAD1	NM_000817	exon16	c.1542delT	p.C514fs	.	.	184	12	242	0	.	91
GAK	2580	broad.mit.edu;bcgsc.ca	37	4	845556	845556	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GAK	NM_005255	exon25	c.3490delG	p.V1164fs	.	.	73	9	100	0	.	568
GALK1	2584	broad.mit.edu;bcgsc.ca	37	17	73754650	73754650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALK1	NM_000154	exon6	c.824delT	p.F275fs	.	.	72	7	75	0	.	90
GALNT12	79695	hgsc.bcm.edu;broad.mit.edu	37	9	101606479	101606479	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNT12	NM_024642	exon8	c.1446delG	p.M482fs	.	.	152	10	250	0	.	92
GALNTL5	168391	hgsc.bcm.edu;broad.mit.edu	37	7	151704993	151704993	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GALNTL5	NM_145292	exon7	c.990delT	p.D330fs	.	.	157	10	175	0	.	92
GATA1	2623	hgsc.bcm.edu;broad.mit.edu	37	X	48652397	48652397	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GATA1	NM_002049	exon6	c.1068delC	p.G356fs	.	.	159	10	183	0	.	1315
GATM	2628	bcgsc.ca	37	15	45660315	45660315	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GATM	NM_001482	exon4	c.T628C	p.W210R	.	.	127	5	178	1	.	90
GATSL3	652968	bcgsc.ca	37	22	30681819	30681819	+	Splice_Site	SNP	A	A	C	rs115548734		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GATSL3	NM_001037666	exon9	c.921+2T>G	.	.	.	187	40	187	1	.	135
GCC2	9648	bcgsc.ca	37	2	109099573	109099573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCC2	NM_181453	exon12	c.A3401G	p.Q1134R	.	.	125	5	173	1	.	91
GCLM	2730	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94354636	94354636	+	Silent	SNP	C	C	T	rs79501187	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCLM	NM_002061	exon7	c.G735A	p.L245L	.	.	91	32	163	1	C|0.996;G|0.004	91
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu	37	12	120580649	120580649	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon43	c.5592delT	p.F1864fs	.	.	195	12	293	0	.	94
GCN1L1	10985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120582745	120582745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCN1L1	NM_006836	exon40	c.C5137A	p.R1713S	.	.	87	34	129	0	.	94
GCNT2	2651	hgsc.bcm.edu;broad.mit.edu	37	6	10586407	10586407	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GCNT2	NM_145655	exon1	c.185delA	p.E62fs	.	.	160	10	248	0	.	92
GDA	9615	hgsc.bcm.edu	37	9	74860174	74860174	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDA	NM_004293	exon12	c.1246delT	p.F416fs	.	.	131	13	150	0	.	230
GDF5	8200	hgsc.bcm.edu;broad.mit.edu	37	20	34022065	34022065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon2	c.1148delC	p.P383fs	.	.	158	11	194	0	.	226
GDF5	8200	hgsc.bcm.edu;broad.mit.edu	37	20	34025211	34025211	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDF5	NM_000557	exon1	c.498delC	p.P166fs	.	.	146	11	156	0	.	226
GDPD4	220032	bcgsc.ca	37	11	76990399	76990399	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GDPD4	NM_182833	exon3	c.99delT	p.F33fs	.	.	61	6	84	0	.	69
GDPGP1	390637	bcgsc.ca	37	15	90784251	90784251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001013657	exon4	c.G111C	p.M37I	.	.	127	6	169	1	.	.
GFM2	84340	hgsc.bcm.edu	37	5	74021852	74021852	+	Missense_Mutation	SNP	A	A	T	rs76339998	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GFM2	NM_032380	exon18	c.T1826A	p.F609Y	.	.	117	12	160	0	A|0.963;T|0.037	90
GGT7	2686	bcgsc.ca	37	20	33460572	33460572	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GGT7	NM_178026	exon1	c.47delA	p.Y16fs	.	.	30	3	94	0	.	91
GK5	256356	hgsc.bcm.edu;broad.mit.edu	37	3	141896386	141896386	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GK5	NM_001039547	exon12	c.1081delA	p.M361fs	.	.	194	12	272	0	.	90
GKN2	200504	hgsc.bcm.edu;broad.mit.edu	37	2	69177322	69177322	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GKN2	NM_182536	exon3	c.140delA	p.N47fs	.	.	260	19	348	0	.	90
GLDC	2731	bcgsc.ca	37	9	6536065	6536065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLDC	NM_000170	exon23	c.A2837G	p.K946R	.	.	158	5	186	1	.	92
GLI1	2735	bcgsc.ca	37	12	57864503	57864503	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLI1	NM_005269	exon12	c.1980delG	p.L660fs	.	.	50	5	87	0	.	722
GLIPR1L2	144321	hgsc.bcm.edu	37	12	75816819	75816819	+	Missense_Mutation	SNP	G	G	C	rs77365041	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLIPR1L2	NM_152436	exon4	c.G720C	p.K240N	.	.	68	5	71	0	G|0.872;C|0.128	91
GLS	2744	hgsc.bcm.edu;broad.mit.edu	37	2	191769844	191769844	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GLS	NM_014905	exon6	c.930delA	p.G310fs	.	.	151	11	226	0	.	92
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu	37	2	220364899	220364899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GMPPA	NM_205847	exon3	c.97delG	p.G33fs	.	.	155	11	245	0	.	90
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu	37	3	37366955	37366955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GOLGA4	NM_001172713	exon15	c.3644delA	p.E1215fs	.	.	236	15	293	0	.	93
GOLGA6A	342096	broad.mit.edu;bcgsc.ca	37	15	74373010	74373010	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GOLGA6A	NM_001038640	exon2	c.151delA	p.T51fs	.	.	626	32	727	0	.	44
GP1BA	2811	hgsc.bcm.edu;broad.mit.edu	37	17	4837331	4837331	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_000173	exon2	c.1432delT	p.F478fs	.	.	157	10	217	0	.	.
GPANK1	7918	hgsc.bcm.edu;broad.mit.edu	37	6	31630338	31630338	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPANK1	NM_001199238	exon4	c.776delG	p.G259fs	.	.	174	11	227	0	.	91
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu	37	1	46120968	46120968	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPBP1L1	NM_021639	exon5	c.84delA	p.K28fs	.	.	238	15	328	0	.	91
GPHB5	122876	bcgsc.ca	37	14	63784409	63784409	+	RNA	SNP	C	C	G	rs79957669		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPHB5	.	.	.	.	.	.	127	19	219	0	.	67
GPR155	151556	hgsc.bcm.edu;broad.mit.edu	37	2	175318465	175318465	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR155	NM_001033045	exon12	c.1876delA	p.N626fs	.	.	114	10	156	0	.	91
GPR162	27239	hgsc.bcm.edu;broad.mit.edu	37	12	6936291	6936291	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR162	NM_019858	exon5	c.1689delG	p.T563fs	.	.	153	10	150	0	.	92
GPR50	9248	hgsc.bcm.edu	37	X	150349560	150349560	+	Missense_Mutation	SNP	C	C	T	rs199797606		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPR50	NM_004224	exon2	c.C1505T	p.T502I	.	.	63	17	66	0	.	176
GPRASP2	114928	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101971961	101971961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRASP2	NM_138437	exon4	c.G2164A	p.G722R	.	.	167	138	215	0	.	131
GPRIN2	9721	bcgsc.ca	37	10	46998895	46998895	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPRIN2	NM_014696	exon3	c.C15A	p.R5R	.	.	236	7	368	0	.	90
GPSM2	29899	broad.mit.edu;bcgsc.ca	37	1	109440159	109440159	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GPSM2	NM_013296	exon4	c.324delG	p.L108fs	.	.	58	8	81	0	.	227
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu	37	18	19100709	19100709	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001142966	exon32	c.5533delT	p.F1845fs	.	.	172	12	228	0	.	.
GREM1	26585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	33022990	33022990	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GREM1	NM_013372	exon2	c.99delC	p.I33fs	.	.	114	11	144	0	.	514
GRIA3	2892	hgsc.bcm.edu	37	X	122336604	122336604	+	Missense_Mutation	SNP	C	C	G	rs72609489		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIA3	NM_001256743	exon3	c.C385G	p.P129A	.	.	62	7	102	0	.	134
GRIK2	2898	bcgsc.ca	37	6	102376394	102376394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIK2	NM_021956	exon13	c.T1972C	p.F658L	.	.	154	5	275	0	.	157
GRIK2	2898	broad.mit.edu;bcgsc.ca	37	6	102503292	102503292	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIK2	NM_021956	exon15	c.2399delG	p.R800fs	.	.	80	8	120	0	.	157
GRIN2B	2904	bcgsc.ca	37	12	14019044	14019044	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2B	NM_000834	exon2	c.99delC	p.P33fs	.	.	44	5	91	0	.	231
GRIN2C	2905	hgsc.bcm.edu;broad.mit.edu	37	17	72838789	72838789	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2C	NM_000835	exon13	c.3487delG	p.A1163fs	.	.	167	10	161	0	.	228
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu	37	19	48918135	48918135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GRIN2D	NM_000836	exon6	c.1427delC	p.A476fs	.	.	164	11	246	0	.	156
GSDMA	284110	hgsc.bcm.edu;broad.mit.edu	37	17	38132221	38132221	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSDMA	NM_178171	exon11	c.1066delA	p.K356fs	.	.	220	15	330	0	.	90
GSG1	83445	hgsc.bcm.edu;broad.mit.edu	37	12	13237891	13237891	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSG1	NM_001080555	exon7	c.1033delG	p.A345fs	.	.	210	13	344	0	.	90
GSK3A	2931	bcgsc.ca	37	19	42741062	42741062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon3	c.A503G	p.D168G	.	.	133	5	172	0	.	981
GSK3A	2931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	42736820	42736820	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSK3A	NM_019884	exon9	c.A1113C	p.R371R	.	.	130	59	126	0	.	981
GSTA5	221357	hgsc.bcm.edu;broad.mit.edu	37	6	52698964	52698964	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSTA5	NM_153699	exon5	c.389delA	p.N130fs	.	.	174	12	219	0	.	91
GSTO1	9446	bcgsc.ca	37	10	106022766	106022766	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GSTO1	NM_004832	exon4	c.A396G	p.R132R	.	.	80	4	94	0	.	90
GTF2H2B	653238	broad.mit.edu;bcgsc.ca	37	5	69730843	69730843	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	1314	7	1569	0	.	.
GTF2H2B	653238	broad.mit.edu;bcgsc.ca	37	5	69730846	69730846	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	1244	10	1485	0	.	.
GTF2IRD2B	389524	broad.mit.edu;bcgsc.ca	37	7	74564270	74564270	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GTF2IRD2B	NM_001003795	exon16	c.2017delG	p.V673fs	.	.	1078	9	1109	0	.	45
GTF2IRD2B	389524	broad.mit.edu;bcgsc.ca	37	7	74564272	74564272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GTF2IRD2B	NM_001003795	exon16	c.2019delG	p.V673fs	.	.	1087	13	1124	0	.	45
GTF2IRD2P1	401375	broad.mit.edu	37	7	72664009	72664009	+	RNA	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	410	21	115	1	.	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72663998	72663998	+	RNA	SNP	T	T	G	rs2539034	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	518	173	200	0	T|0.500;G|0.500	.
GTF2IRD2P1	401375	broad.mit.edu;bcgsc.ca	37	7	72664010	72664010	+	RNA	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	404	44	109	0	.	.
GTF2IRD2P1	401375	bcgsc.ca	37	7	72664015	72664015	+	RNA	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	373	63	73	2	.	.
GUCY2C	2984	hgsc.bcm.edu	37	12	14825857	14825857	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	GUCY2C	NM_004963	exon9	c.1120delG	p.D374fs	.	.	178	12	247	0	.	338
HACE1	57531	hgsc.bcm.edu;broad.mit.edu	37	6	105198277	105198277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HACE1	NM_020771	exon20	c.2282delT	p.L761fs	.	.	147	10	247	0	.	663
HAGH	3029	hgsc.bcm.edu;broad.mit.edu	37	16	1866951	1866951	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAGH	NM_005326	exon7	c.690delT	p.F230fs	.	.	165	10	188	0	.	91
HAMP	57817	hgsc.bcm.edu;broad.mit.edu	37	19	35775716	35775716	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HAMP	NM_021175	exon2	c.115delC	p.P39fs	.	.	157	14	206	0	.	90
HBS1L	10767	broad.mit.edu;bcgsc.ca	37	6	135357714	135357714	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HBS1L	NM_001145207	exon5	c.1881delA	p.K627fs	.	.	88	9	107	0	.	92
HCK	3055	hgsc.bcm.edu;broad.mit.edu	37	20	30640230	30640230	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HCK	NM_001172130	exon1	c.3delG	p.L1fs	.	.	198	13	302	0	.	948
HDLBP	3069	bcgsc.ca	37	2	242203917	242203917	+	Silent	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HDLBP	NM_001243900	exon5	c.C288G	p.P96P	.	.	182	5	175	0	.	290
HECTD2	143279	bcgsc.ca	37	10	93272061	93272061	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HECTD2	NM_182765	exon21	c.2251delC	p.P751fs	.	.	45	5	101	0	.	658
HELQ	113510	hgsc.bcm.edu;broad.mit.edu	37	4	84358058	84358058	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HELQ	NM_133636	exon9	c.2001delT	p.F667fs	.	.	163	10	234	0	.	155
HELZ2	85441	broad.mit.edu;mdanderson.org	37	20	62203679	62203679	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001037335	exon2	c.C60A	p.P20P	.	.	11	4	18	0	.	.
HERC1	8925	hgsc.bcm.edu;broad.mit.edu	37	15	63999002	63999002	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC1	NM_003922	exon25	c.4613delT	p.L1538fs	.	.	198	12	190	0	.	666
HERC2	8924	hgsc.bcm.edu;broad.mit.edu	37	15	28421641	28421641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC2	NM_004667	exon63	c.9619delG	p.V3207fs	.	.	233	15	291	0	.	234
HERC2P3	283755	broad.mit.edu	37	15	20644645	20644645	+	RNA	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC2P3	.	.	.	.	.	.	18	6	17	0	.	92
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	89601295	89601295	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC3	NM_014606	exon20	c.2248delT	p.F750fs	.	.	100	13	125	0	.	660
HERC4	26091	hgsc.bcm.edu	37	10	69785412	69785412	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G799T	p.G267X	.	.	105	44	132	0	.	659
HERC4	26091	hgsc.bcm.edu;bcgsc.ca	37	10	69785411	69785411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC4	NM_022079	exon8	c.G800T	p.G267V	.	.	107	43	133	0	.	659
HERC6	55008	bcgsc.ca	37	4	89338591	89338591	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HERC6	NM_017912	exon13	c.1573delT	p.F525fs	.	.	64	6	83	0	.	658
HEXDC	284004	bcgsc.ca	37	17	80391685	80391685	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HEXDC	NM_173620	exon5	c.T434G	p.I145S	.	.	381	10	334	1	.	92
HIATL1	84641	hgsc.bcm.edu;broad.mit.edu	37	9	97213759	97213759	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIATL1	NM_032558	exon8	c.865delA	p.K289fs	.	.	154	12	193	0	.	92
HIF3A	64344	ucsc.edu;bcgsc.ca	37	19	46832575	46832575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIF3A	NM_152795	exon12	c.G1552A	p.A518T	.	.	159	54	198	1	.	228
HINT3	135114	bcgsc.ca	37	6	126288056	126288056	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HINT3	NM_138571	exon2	c.A225G	p.K75K	.	.	70	4	97	0	.	90
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu	37	1	114515848	114515848	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIPK1	NM_198268	exon16	c.3347delC	p.A1116fs	.	.	162	11	205	0	.	361
HIRA	7290	hgsc.bcm.edu;broad.mit.edu	37	22	19346949	19346949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIRA	NM_003325	exon18	c.2144delG	p.G715fs	.	.	148	10	182	0	.	91
HIST1H1C	3006	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26056377	26056377	+	Missense_Mutation	SNP	C	C	T	rs186228942	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H1C	NM_005319	exon1	c.G280A	p.V94M	.	.	243	103	318	1	C|0.999;G|0.000	231
HIST1H4G	8369	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	26246913	26246913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST1H4G	NM_003547	exon1	c.T293C	p.L98P	.	.	117	39	138	0	.	68
HIST2H2AC	8338	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858905	149858905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIST2H2AC	NM_003517	exon1	c.A381G	p.K127K	.	.	394	78	281	0	.	92
HIVEP3	59269	bcgsc.ca	37	1	41978827	41978827	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIVEP3	NM_024503	exon8	c.G6065C	p.G2022A	.	.	211	7	228	0	.	157
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu	37	1	41978825	41978825	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HIVEP3	NM_024503	exon8	c.6067delG	p.A2023fs	.	.	196	12	222	0	.	157
HLA-A	3105	hgsc.bcm.edu;broad.mit.edu	37	6	29910372	29910372	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-A	NM_001242758	exon1	c.42delG	p.S14fs	.	.	204	16	293	0	.	92
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu	37	6	30458916	30458916	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HLA-E	NM_005516	exon4	c.613delC	p.P205fs	.	.	176	11	284	0	.	516
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu	37	1	34329847	34329847	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HMGB4	NM_145205	exon2	c.55delT	p.F19fs	.	.	161	10	266	0	.	90
HNRNPH1	3187	hgsc.bcm.edu;broad.mit.edu	37	5	179044644	179044644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPH1	NM_001257293	exon9	c.928delT	p.S310fs	.	.	206	15	283	0	.	22
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu	37	1	245027581	245027581	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HNRNPU	NM_004501	exon1	c.29delA	p.K10fs	.	.	318	19	269	0	.	22
HOOK1	51361	hgsc.bcm.edu;broad.mit.edu	37	1	60325886	60325886	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HOOK1	NM_015888	exon15	c.1418delA	p.E473fs	.	.	178	15	217	0	.	154
HP1BP3	50809	hgsc.bcm.edu;broad.mit.edu	37	1	21097452	21097452	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HP1BP3	NM_016287	exon6	c.625delA	p.R209fs	.	.	134	10	227	0	.	91
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188997	152188997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HRNR	NM_001009931	exon3	c.5108delG	p.G1703fs	.	.	540	17	473	0	.	93
HS3ST5	222537	hgsc.bcm.edu;broad.mit.edu	37	6	114378787	114378787	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HS3ST5	NM_153612	exon2	c.675delA	p.K225fs	.	.	334	21	402	0	.	92
HSD17B13	345275	bcgsc.ca	37	4	88231394	88231394	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSD17B13	NM_001136230	exon6	c.704+1G>T	.	.	.	205	11	315	1	.	90
HSD17B13	345275	hgsc.bcm.edu;bcgsc.ca	37	4	88231395	88231395	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSD17B13	NM_178135	exon6	c.A812G	p.K271R	.	.	207	11	316	0	.	90
HSP90AA1	3320	hgsc.bcm.edu;broad.mit.edu	37	14	102550137	102550137	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSP90AA1	NM_001017963	exon8	c.1697delA	p.N566fs	.	.	209	13	266	0	.	949
HSPB3	8988	hgsc.bcm.edu;broad.mit.edu	37	5	53751734	53751734	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HSPB3	NM_006308	exon1	c.115delG	p.G39fs	.	.	149	11	204	0	.	226
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu	37	X	135593107	135593107	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HTATSF1	NM_001163280	exon10	c.1203delT	p.H401fs	.	.	114	10	194	0	.	132
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu	37	16	70843883	70843883	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYDIN	NM_001270974	exon85	c.14686delC	p.L4896X	.	.	147	10	247	0	.	92
HYLS1	219844	hgsc.bcm.edu;broad.mit.edu	37	11	125769979	125769979	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	HYLS1	NM_001134793	exon3	c.716delG	p.W239fs	.	.	130	10	182	0	.	91
IBTK	25998	hgsc.bcm.edu;broad.mit.edu	37	6	82949918	82949918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IBTK	NM_015525	exon2	c.286delT	p.Y96fs	.	.	172	11	225	0	.	92
IDI1	3422	hgsc.bcm.edu;broad.mit.edu	37	10	1087256	1087256	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IDI1	NM_004508	exon5	c.726delA	p.K242fs	.	.	222	14	258	0	.	90
IFI27L1	122509	hgsc.bcm.edu;broad.mit.edu	37	14	94568273	94568273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFI27L1	NM_145249	exon4	c.175delG	p.G59fs	.	.	267	16	321	0	.	90
IFNA16	3449	hgsc.bcm.edu;broad.mit.edu	37	9	21216773	21216773	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA16	NM_002173	exon1	c.532delT	p.S178fs	.	.	313	22	452	0	.	91
IFNA17	3451	hgsc.bcm.edu;broad.mit.edu	37	9	21227622	21227622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFNA17	NM_021268	exon1	c.551delT	p.I184fs	.	.	350	24	431	0	.	90
IFRD1	3475	hgsc.bcm.edu;broad.mit.edu	37	7	112108039	112108039	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFRD1	NM_001007245	exon10	c.910delT	p.F304fs	.	.	122	12	134	0	.	91
IFT172	26160	hgsc.bcm.edu;broad.mit.edu	37	2	27707958	27707958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT172	NM_015662	exon3	c.223delT	p.S75fs	.	.	217	13	257	0	.	154
IFT52	51098	hgsc.bcm.edu;broad.mit.edu	37	20	42249541	42249541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IFT52	NM_016004	exon9	c.744delC	p.N248fs	.	.	208	13	259	0	.	92
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu	37	15	99459962	99459962	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGF1R	NM_000875	exon10	c.2058delC	p.N686fs	.	.	167	10	223	0	.	1490
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu	37	3	151164709	151164709	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IGSF10	NM_178822	exon4	c.3060delG	p.G1020fs	.	.	150	10	159	0	.	102
IL10RA	3587	bcgsc.ca	37	11	117860234	117860234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL10RA	NM_001558	exon3	c.A266G	p.D89G	.	.	155	5	229	0	.	91
IL13RA2	3598	hgsc.bcm.edu;broad.mit.edu	37	X	114248379	114248379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL13RA2	NM_000640	exon5	c.474delA	p.K158fs	.	.	202	12	276	0	.	132
IL17REL	400935	bcgsc.ca	37	22	50439189	50439189	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL17REL	NM_001001694	exon5	c.213delG	p.G71fs	.	.	67	7	186	1	.	23
IL18R1	8809	hgsc.bcm.edu;broad.mit.edu	37	2	103013192	103013192	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL18R1	NM_003855	exon10	c.1472delT	p.L491fs	.	.	308	21	450	0	.	93
IL27RA	9466	hgsc.bcm.edu	37	19	14150617	14150617	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IL27RA	NM_004843	exon4	c.429delC	p.D143fs	.	.	152	10	223	0	.	90
ILF3	3609	hgsc.bcm.edu;broad.mit.edu	37	19	10798146	10798146	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ILF3	NM_017620	exon18	c.2196delA	p.P732fs	.	.	147	11	183	0	.	93
IMMT	10989	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	86385804	86385804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IMMT	NM_006839	exon10	c.A1073G	p.Y358C	.	.	137	58	173	0	.	91
INADL	10207	hgsc.bcm.edu;broad.mit.edu	37	1	62586958	62586958	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INADL	NM_176877	exon38	c.4996delA	p.K1666fs	.	.	164	11	222	0	.	94
INHBC	3626	hgsc.bcm.edu;broad.mit.edu	37	12	57843500	57843500	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INHBC	NM_005538	exon2	c.754delT	p.F252fs	.	.	178	12	257	0	.	514
INTS1	26173	hgsc.bcm.edu;broad.mit.edu	37	7	1517412	1517412	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001080453	exon34	c.4791delG	p.G1597fs	.	.	198	13	178	0	.	.
INTS4L2	644619	broad.mit.edu	37	7	65150720	65150720	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	111	7	55	0	.	.
INTS8	55656	hgsc.bcm.edu;broad.mit.edu	37	8	95877744	95877744	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	INTS8	NM_017864	exon17	c.2087delT	p.L696fs	.	.	292	18	231	0	.	90
IPO11	51194	bcgsc.ca	37	5	61847115	61847115	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IPO11	NM_001134779	exon26	c.2532delT	p.S844fs	.	.	65	9	97	0	.	227
IPPK	64768	hgsc.bcm.edu;broad.mit.edu	37	9	95432235	95432235	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IPPK	NM_022755	exon1	c.36delG	p.G12fs	.	.	107	10	168	0	.	92
IQCG	84223	bcgsc.ca	37	3	197665600	197665600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IQCG	NM_032263	exon5	c.G334A	p.A112T	.	.	264	9	355	0	.	90
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu	37	1	156503821	156503821	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IQGAP3	NM_178229	exon30	c.3853delG	p.E1285fs	.	.	170	11	127	0	.	96
IRS1	3667	hgsc.bcm.edu;broad.mit.edu	37	2	227659975	227659975	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IRS1	NM_005544	exon1	c.3480delC	p.P1160fs	.	.	114	10	165	0	.	1272
IRX4	50805	bcgsc.ca	37	5	1882735	1882735	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	IRX4	NM_016358	exon1	c.27delC	p.P9fs	.	.	41	3	87	0	.	226
ISM2	145501	hgsc.bcm.edu;broad.mit.edu	37	14	77942048	77942048	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ISM2	NM_199296	exon7	c.1606delG	p.D536fs	.	.	166	10	234	0	.	91
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu	37	15	68624271	68624271	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA11	NM_001004439	exon14	c.1696delC	p.L566fs	.	.	165	10	249	0	.	538
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu	37	2	182339748	182339748	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA4	NM_000885	exon3	c.381delG	p.L127fs	.	.	253	15	324	0	.	230
ITGA5	3678	hgsc.bcm.edu;broad.mit.edu	37	12	54798980	54798980	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA5	NM_002205	exon12	c.1195delC	p.L399fs	.	.	150	12	227	0	.	659
ITGA6	3655	bcgsc.ca	37	2	173352280	173352280	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITGA6	NM_000210	exon16	c.A2166G	p.K722K	.	.	111	5	180	1	.	227
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu	37	10	7618714	7618714	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITIH5	NM_001001851	exon10	c.1680delC	p.P560fs	.	.	144	11	219	0	.	92
ITPR2	3709	hgsc.bcm.edu	37	12	26640046	26640046	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITPR2	NM_002223	exon40	c.5509delA	p.R1837fs	.	.	295	19	448	0	.	542
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu	37	12	26839461	26839461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ITPR2	NM_002223	exon11	c.1101delT	p.F367fs	.	.	142	14	203	0	.	542
JAK1	3716	hgsc.bcm.edu;broad.mit.edu	37	1	65309771	65309771	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK1	NM_002227	exon17	c.2379delC	p.P793fs	.	.	152	10	242	0	.	3900
JAK2	3717	hgsc.bcm.edu;broad.mit.edu	37	9	5077574	5077574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK2	NM_004972	exon15	c.1986delT	p.H662fs	.	.	167	10	122	0	.	75307
JAK3	3718	bcgsc.ca	37	19	17948866	17948866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JAK3	NM_000215	exon12	c.A1576G	p.N526D	.	.	115	5	159	0	.	2418
JKAMP	51528	bcgsc.ca	37	14	59961782	59961782	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JKAMP	NM_016475	exon4	c.A298G	p.M100V	.	.	217	7	296	0	.	67
JMJD7-PLA2G4B	8681	bcgsc.ca	37	15	42127308	42127308	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JMJD7-PLA2G4B	NM_005090	exon3	c.359delC	p.A120fs	.	.	54	6	72	0	.	135
JMY	133746	bcgsc.ca	37	5	78586071	78586071	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	JMY	NM_152405	exon3	c.1334delA	p.E445fs	.	.	48	5	106	0	.	227
KALRN	8997	hgsc.bcm.edu;broad.mit.edu	37	3	124174076	124174076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KALRN	NM_003947	exon22	c.3599delA	p.E1200fs	.	.	141	10	173	0	.	738
KANSL1	284058	bcgsc.ca	37	17	44159832	44159832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001193466	exon4	c.A1508G	p.K503R	.	.	197	6	250	2	.	.
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu	37	8	41791683	41791683	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001099412	exon18	c.4055delT	p.L1352X	.	.	156	10	218	0	.	.
KAT6A	7994	hgsc.bcm.edu;broad.mit.edu	37	8	41792228	41792228	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001099412	exon18	c.3510delA	p.K1170fs	.	.	198	14	256	0	.	.
KATNAL1	84056	hgsc.bcm.edu;broad.mit.edu	37	13	30814622	30814622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KATNAL1	NM_001014380	exon6	c.701delT	p.F234fs	.	.	147	10	140	0	.	90
KBTBD12	166348	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	127642893	127642893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KBTBD12	NM_207335	exon1	c.989delA	p.E330fs	.	.	108	11	182	0	.	23
KCND2	3751	hgsc.bcm.edu;broad.mit.edu	37	7	120372995	120372995	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCND2	NM_012281	exon2	c.1154delT	p.I385fs	.	.	265	18	291	0	.	517
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	88693828	88693828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK10	NM_138318	exon4	c.572delT	p.L191fs	.	.	97	40	80	0	.	95
KCNK2	3776	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215297991	215297991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK2	NM_001017425	exon3	c.A373G	p.I125V	.	.	391	106	310	0	.	90
KCNK7	10089	hgsc.bcm.edu;broad.mit.edu	37	11	65363236	65363236	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCNK7	NM_005714	exon1	c.8delG	p.G3fs	.	.	276	17	404	0	.	90
KCTD12	115207	bcgsc.ca	37	13	77460243	77460243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KCTD12	NM_138444	exon1	c.41delG	p.G14fs	.	.	47	5	74	0	.	91
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu	37	12	121880092	121880092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KDM2B	NM_032590	exon19	c.3152delC	p.P1051fs	.	.	178	13	175	0	.	638
KDM5D	8284	bcgsc.ca	37	Y	21905096	21905096	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KDM5D	NM_001146705	exon3	c.T180C	p.V60V	.	.	144	5	195	1	.	560
KHDRBS2	202559	broad.mit.edu;bcgsc.ca	37	6	62604676	62604676	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHDRBS2	NM_152688	exon6	c.674delG	p.G225fs	.	.	30	9	45	0	.	272
KHNYN	23351	bcgsc.ca	37	14	24901277	24901277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHNYN	NM_015299	exon3	c.G810T	p.W270C	.	.	214	10	219	0	.	93
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu	37	14	24901276	24901276	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KHNYN	NM_015299	exon3	c.809delG	p.W270fs	.	.	216	14	220	0	.	93
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu	37	6	24596508	24596508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA0319	NM_001168377	exon3	c.394delG	p.D132fs	.	.	124	10	140	0	.	92
KIAA0586	9786	bcgsc.ca	37	14	58954640	58954640	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA0586	NM_001244189	exon25	c.3499delC	p.P1167fs	.	.	59	6	109	0	.	23
KIAA1033	23325	bcgsc.ca	37	12	105543529	105543529	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1033	NM_015275	exon25	c.2649+2T>C	.	.	.	193	6	248	0	.	91
KIAA1045	23349	hgsc.bcm.edu;bcgsc.ca	37	9	34976586	34976586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1045	NM_015297	exon5	c.698delG	p.R233fs	.	.	111	11	171	0	.	69
KIAA1210	57481	bcgsc.ca	37	X	118216981	118216981	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1210	NM_020721	exon13	c.4951delT	p.S1651fs	.	.	36	4	61	0	.	67
KIAA1468	57614	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	59895676	59895676	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1468	NM_020854	exon8	c.1293delA	p.G431fs	.	.	138	14	218	0	.	158
KIAA1609	57707	hgsc.bcm.edu;broad.mit.edu	37	16	84520325	84520325	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1609	NM_020947	exon5	c.870delA	p.G290fs	.	.	140	10	247	0	.	92
KIAA1755	85449	bcgsc.ca	37	20	36841627	36841627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1755	NM_001029864	exon14	c.3420delA	p.K1140fs	.	.	58	6	86	0	.	95
KIAA1841	84542	hgsc.bcm.edu;broad.mit.edu	37	2	61308630	61308630	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIAA1841	NM_032506	exon7	c.714delA	p.L238fs	.	.	218	15	253	0	.	90
KIF15	56992	hgsc.bcm.edu;broad.mit.edu	37	3	44816769	44816769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF15	NM_020242	exon3	c.86delT	p.V29fs	.	.	167	11	212	0	.	91
KIF20A	10112	hgsc.bcm.edu;broad.mit.edu	37	5	137522908	137522908	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF20A	NM_005733	exon19	c.2479delA	p.K827fs	.	.	139	10	176	0	.	90
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu	37	10	91478521	91478521	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF20B	NM_016195	exon12	c.1326delT	p.S442fs	.	.	195	13	285	0	.	93
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu	37	1	200959829	200959829	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF21B	NM_017596	exon19	c.2710delG	p.A904fs	.	.	198	13	152	0	.	96
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu	37	1	200974546	200974546	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF21B	NM_017596	exon5	c.622delG	p.A208fs	.	.	212	14	139	0	.	96
KIF25	3834	bcgsc.ca	37	6	168445624	168445624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF25	NM_030615	exon9	c.1103delC	p.A368fs	.	.	41	6	62	0	.	92
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu	37	1	245775272	245775272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon9	c.2092delG	p.G698fs	.	.	203	12	123	0	.	25
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu	37	1	245848940	245848940	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIF26B	NM_018012	exon12	c.2655delC	p.G885fs	.	.	347	21	244	0	.	25
KIFC2	90990	hgsc.bcm.edu;broad.mit.edu	37	8	145692926	145692926	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIFC2	NM_145754	exon5	c.528delG	p.L176fs	.	.	162	10	146	0	.	92
KIR2DL1	3802	broad.mit.edu;bcgsc.ca	37	19	55282317	55282317	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIR2DL1	NM_014218	exon2	c.51delG	p.Q17fs	.	.	128	8	196	0	.	90
KIT	3815	hgsc.bcm.edu;broad.mit.edu	37	4	55565881	55565881	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIT	NM_000222	exon4	c.705delA	p.I235fs	.	.	155	10	229	0	.	20166
KIT	3815	ucsc.edu;bcgsc.ca	37	4	55570013	55570013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KIT	NM_000222	exon5	c.A880T	p.N294Y	.	.	247	96	370	3	.	20166
KLF15	28999	hgsc.bcm.edu;broad.mit.edu	37	3	126071137	126071137	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF15	NM_014079	exon2	c.629delG	p.G210fs	.	.	148	10	183	0	.	91
KLF9	687	hgsc.bcm.edu;broad.mit.edu	37	9	73028126	73028126	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLF9	NM_001206	exon1	c.154delG	p.D52fs	.	.	151	11	248	0	.	90
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu	37	14	50190646	50190646	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC1	NM_172193	exon5	c.459delT	p.C153fs	.	.	144	10	179	0	.	91
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu	37	1	161068399	161068399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLHDC9	NM_001007255	exon1	c.74delT	p.L25fs	.	.	224	15	209	0	.	22
KLK13	26085	broad.mit.edu;bcgsc.ca	37	19	51560019	51560019	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KLK13	NM_015596	exon5	c.659delG	p.G220fs	.	.	52	7	76	0	.	226
KPNA1	3836	bcgsc.ca	37	3	122182843	122182843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KPNA1	NM_002264	exon4	c.283delA	p.S95fs	.	.	38	4	70	0	.	226
KRBA1	84626	bcgsc.ca	37	7	149420823	149420823	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRBA1	NM_032534	exon8	c.773-2A>T	.	.	.	126	9	144	0	.	91
KREMEN1	83999	broad.mit.edu;bcgsc.ca	37	22	29490379	29490379	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KREMEN1	NM_001039570	exon2	c.231delG	p.E77fs	.	.	107	11	116	0	.	659
KRT17	3872	broad.mit.edu;bcgsc.ca	37	17	39780538	39780538	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRT17	NM_000422	exon1	c.224delG	p.G75fs	.	.	522	10	697	0	.	92
KRT5	3852	ucsc.edu;bcgsc.ca	37	12	52913639	52913639	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRT5	NM_000424	exon1	c.A442T	p.S148C	.	.	361	138	518	2	.	90
KRTAP10-2	386679	hgsc.bcm.edu	37	21	45970771	45970771	+	Missense_Mutation	SNP	C	C	T	rs200215960	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	KRTAP10-2	NM_198693	exon1	c.G571A	p.V191I	.	.	172	14	224	0	C|0.956;T|0.044	135
KRTAP2-3	730755	broad.mit.edu;mdanderson.org	37	17	39216037	39216037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001165252	exon1	c.G266T	p.C89F	.	.	32	16	37	0	.	.
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu	37	6	129591838	129591838	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_000426	exon17	c.2392delA	p.K798fs	.	.	157	10	206	0	.	162
LAMA2	3908	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	129636958	129636958	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA2	NM_000426	exon26	c.G3787T	p.E1263X	.	.	69	30	70	0	.	162
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu	37	20	60894843	60894843	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMA5	NM_005560	exon51	c.6768delG	p.G2256fs	.	.	104	10	125	0	.	93
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu	37	7	107564717	107564717	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMB1	NM_002291	exon33	c.5182delA	p.T1728fs	.	.	249	16	225	0	.	97
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu	37	7	107638926	107638926	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LAMB1	NM_002291	exon4	c.225delA	p.K75fs	.	.	181	11	193	0	.	97
LARP4	113251	bcgsc.ca	37	12	50867250	50867250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LARP4	NM_052879	exon14	c.A1598G	p.E533G	.	.	186	6	286	0	.	91
LCA5	167691	hgsc.bcm.edu;broad.mit.edu	37	6	80223315	80223315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5	NM_001122769	exon3	c.334delA	p.I112fs	.	.	150	10	219	0	.	90
LCA5L	150082	hgsc.bcm.edu;broad.mit.edu	37	21	40782217	40782217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCA5L	NM_152505	exon8	c.1137delA	p.K379fs	.	.	153	10	224	0	.	22
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu	37	1	152760075	152760075	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE1E	NM_178353	exon2	c.300delA	p.S100fs	.	.	216	16	128	0	.	90
LCE2D	353141	hgsc.bcm.edu;broad.mit.edu	37	1	152636615	152636615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCE2D	NM_178430	exon2	c.34delC	p.P12fs	.	.	267	16	181	0	.	68
LCK	3932	hgsc.bcm.edu;broad.mit.edu	37	1	32742265	32742265	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCK	NM_005356	exon9	c.842delC	p.S281fs	.	.	162	10	231	0	.	1378
LCN15	389812	bcgsc.ca	37	9	139656671	139656671	+	Silent	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCN15	NM_203347	exon5	c.C489G	p.P163P	.	.	212	11	253	1	.	68
LCTL	197021	bcgsc.ca	37	15	66840911	66840911	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LCTL	NM_207338	exon13	c.1621delG	p.E541fs	.	.	57	6	80	0	.	92
LDLRAD2	401944	bcgsc.ca	37	1	22140897	22140897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LDLRAD2	NM_001013693	exon2	c.92delT	p.L31fs	.	.	19	3	56	0	.	90
LDLRAD4	753	hgsc.bcm.edu;broad.mit.edu	37	18	13612766	13612766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001003674	exon1	c.63delA	p.L21fs	.	.	184	11	222	0	.	.
LEFTY2	7044	bcgsc.ca	37	1	226125386	226125386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LEFTY2	NM_003240	exon4	c.C856T	p.P286S	.	.	530	13	412	0	.	90
LEKR1	389170	hgsc.bcm.edu;broad.mit.edu	37	3	156745953	156745953	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LEKR1	NM_001004316	exon12	c.1430delA	p.E477fs	.	.	156	13	221	0	.	68
LGALS3BP	3959	hgsc.bcm.edu;broad.mit.edu	37	17	76968422	76968422	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGALS3BP	NM_005567	exon6	c.994delG	p.E332fs	.	.	143	11	101	0	.	515
LGI1	9211	hgsc.bcm.edu;broad.mit.edu	37	10	95552602	95552602	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGI1	NM_005097	exon6	c.606delC	p.G202fs	.	.	177	12	231	0	.	517
LGR4	55366	hgsc.bcm.edu;broad.mit.edu	37	11	27389971	27389971	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LGR4	NM_018490	exon18	c.2299delT	p.S767fs	.	.	112	11	141	0	.	91
LHX6	26468	bcgsc.ca	37	9	124975918	124975918	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LHX6	NM_014368	exon8	c.1021delG	p.A341fs	.	.	42	5	73	0	.	90
LILRA1	11024	hgsc.bcm.edu;broad.mit.edu	37	19	55105714	55105714	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LILRA1	NM_006863	exon2	c.5delC	p.T2fs	.	.	216	15	257	0	.	93
LILRA6	79168	broad.mit.edu;bcgsc.ca	37	19	54745462	54745462	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LILRA6	NM_024318	exon4	c.648delT	p.I216fs	.	.	324	7	346	0	.	24
LILRB3	11025	bcgsc.ca	37	19	54725944	54725944	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LILRB3	NM_006864	exon4	c.414delG	p.G138fs	.	.	608	34	762	3	.	93
LLGL2	3993	hgsc.bcm.edu;broad.mit.edu	37	17	73560534	73560534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LLGL2	NM_001015002	exon10	c.982delT	p.F328fs	.	.	184	11	181	0	.	251
LMAN1L	79748	bcgsc.ca	37	15	75116770	75116770	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMAN1L	NM_021819	exon13	c.T1402C	p.F468L	.	.	181	6	248	0	.	90
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu	37	6	70411386	70411386	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMBRD1	NM_018368	exon11	c.1032delT	p.F344fs	.	.	151	10	213	0	.	91
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu	37	6	70500277	70500277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMBRD1	NM_018368	exon2	c.157delT	p.S53fs	.	.	124	10	186	0	.	91
LMF1	64788	bcgsc.ca	37	16	1020879	1020879	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMF1	NM_022773	exon1	c.102delG	p.G34fs	.	.	23	3	52	0	.	90
LMTK2	22853	hgsc.bcm.edu;ucsc.edu	37	7	97821054	97821054	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LMTK2	NM_014916	exon11	c.G1277A	p.W426X	.	.	219	111	220	1	.	1381
LNPEP	4012	broad.mit.edu;bcgsc.ca	37	5	96341813	96341813	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LNPEP	NM_005575	exon10	c.1822delA	p.K608fs	.	.	104	11	124	0	.	229
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu	37	5	96341897	96341897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LNPEP	NM_005575	exon10	c.1906delT	p.F636fs	.	.	166	10	188	0	.	229
LOC100129055	0	broad.mit.edu	37	10	38499729	38499729	+	RNA	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	65	4	89	0	.	.
LOC202181	0	bcgsc.ca	37	5	177053499	177053499	+	RNA	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	844	236	1270	1	.	.
LOC202181	0	bcgsc.ca	37	5	177099147	177099147	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	34	4	92	0	.	.
LOC399715	0	bcgsc.ca	37	10	6335769	6335769	+	RNA	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	59	7	94	0	.	.
LOC399753	0	bcgsc.ca	37	10	49219095	49219095	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	414	15	605	0	.	.
LOC642236	0	bcgsc.ca	37	9	68438583	68438583	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	89	5	132	0	.	.
LOC642236	0	bcgsc.ca	37	9	68452976	68452976	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	97	12	69	0	.	.
LOC643441	0	bcgsc.ca	37	1	113741720	113741720	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	64	7	134	0	.	.
LOC646278	0	bcgsc.ca	37	15	29062015	29062015	+	RNA	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	162	78	236	0	.	.
LONP1	9361	bcgsc.ca	37	19	5719943	5719943	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LONP1	NM_004793	exon1	c.201delG	p.G67fs	.	.	27	4	88	0	.	91
LONRF3	79836	bcgsc.ca	37	X	118109000	118109000	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LONRF3	NM_001031855	exon1	c.257delC	p.A86fs	.	.	50	5	82	0	.	289
LPPR2	0	hgsc.bcm.edu;broad.mit.edu	37	19	11470601	11470601	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LPPR2	NM_022737	exon5	c.360delC	p.S120fs	.	.	124	10	175	0	.	153
LRBA	987	hgsc.bcm.edu;broad.mit.edu	37	4	151789357	151789357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRBA	NM_006726	exon21	c.2550delT	p.F850fs	.	.	161	10	217	0	.	157
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu	37	11	66627620	66627620	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRFN4	NM_024036	exon2	c.1862delG	p.R621fs	.	.	148	10	98	0	.	90
LRP1	4035	hgsc.bcm.edu;broad.mit.edu	37	12	57550002	57550002	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon9	c.1353delG	p.Q451fs	.	.	179	11	228	0	.	596
LRP1	4035	hgsc.bcm.edu;broad.mit.edu	37	12	57556256	57556256	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRP1	NM_002332	exon14	c.2359delC	p.P787fs	.	.	119	10	185	0	.	596
LRPAP1	4043	bcgsc.ca	37	4	3516503	3516503	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LRPAP1	NM_002337	exon7	c.987delG	p.G329fs	.	.	47	5	63	0	.	92
LSP1	4046	hgsc.bcm.edu;broad.mit.edu	37	11	1902755	1902755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LSP1	NM_001242932	exon4	c.669delG	p.E223fs	.	.	197	14	255	0	.	90
LTF	4057	hgsc.bcm.edu	37	3	46501284	46501284	+	Silent	SNP	C	C	T	rs76787706		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LTF	NM_002343	exon2	c.G69A	p.R23R	.	.	155	1	254	0	.	703
LTF	4057	hgsc.bcm.edu;broad.mit.edu	37	3	46495834	46495834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LTF	NM_002343	exon6	c.664delG	p.A222fs	.	.	162	11	226	0	.	703
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu	37	17	48814327	48814327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LUC7L3	NM_006107	exon2	c.106delA	p.K36fs	.	.	165	11	209	0	.	90
LY75-CD302	100526664	hgsc.bcm.edu;broad.mit.edu	37	2	160628476	160628476	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001198759	exon39	c.5508delA	p.K1836fs	.	.	191	12	235	0	.	.
LYPLA1	10434	bcgsc.ca	37	8	55014376	55014376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYPLA1	NM_006330	exon1	c.G8A	p.G3D	.	.	138	6	170	0	.	90
LYSMD2	256586	hgsc.bcm.edu;broad.mit.edu	37	15	52017185	52017185	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYSMD2	NM_153374	exon2	c.407delA	p.N136fs	.	.	180	11	239	0	.	90
LYST	1130	hgsc.bcm.edu;broad.mit.edu	37	1	235887447	235887447	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon39	c.9196delT	p.S3066fs	.	.	292	18	193	0	.	143
LYST	1130	hgsc.bcm.edu;broad.mit.edu	37	1	235964220	235964220	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LYST	NM_000081	exon9	c.3890delT	p.L1297X	.	.	152	12	136	0	.	143
LZIC	84328	hgsc.bcm.edu;broad.mit.edu	37	1	9990460	9990460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	LZIC	NM_032368	exon7	c.570delA	p.K190fs	.	.	300	19	398	0	.	90
MAATS1	89876	broad.mit.edu;bcgsc.ca	37	3	119466706	119466706	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_033364	exon16	c.2100delT	p.S700fs	.	.	71	8	110	0	.	.
MAB21L2	10586	hgsc.bcm.edu;broad.mit.edu	37	4	151505172	151505172	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAB21L2	NM_006439	exon1	c.991delC	p.P331fs	.	.	129	10	184	0	.	91
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	51637805	51637806	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAGED1	NM_001005333	exon3	c.128_129del	p.43_43del	.	.	131	85	224	0	.	133
MAN1B1	11253	hgsc.bcm.edu;broad.mit.edu	37	9	139994268	139994268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAN1B1	NM_016219	exon6	c.851delG	p.W284fs	.	.	177	11	209	0	.	91
MAOB	4129	hgsc.bcm.edu;broad.mit.edu	37	X	43637948	43637948	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAOB	NM_000898	exon11	c.1118delG	p.G373fs	.	.	175	12	260	0	.	555
MAP2	4133	hgsc.bcm.edu;broad.mit.edu	37	2	210558065	210558065	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP2	NM_002374	exon7	c.1171delC	p.P391fs	.	.	184	11	260	0	.	591
MAP3K11	4296	hgsc.bcm.edu;broad.mit.edu	37	11	65366937	65366937	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K11	NM_002419	exon9	c.2134delC	p.L712fs	.	.	222	15	255	0	.	980
MAP3K14	9020	bcgsc.ca	37	17	43364295	43364295	+	RNA	SNP	C	C	G	rs201814447		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K14	.	.	.	.	.	.	115	11	184	0	.	1453
MAP3K4	4216	hgsc.bcm.edu	37	6	161455391	161455391	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_006724	exon2	c.253delC	p.P85fs	.	.	159	10	198	0	.	548
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu	37	6	161532936	161532936	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP3K4	NM_005922	exon24	c.4465delA	p.K1489fs	.	.	299	18	393	0	.	548
MAP4K3	8491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39552897	39552897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP4K3	NM_001270425	exon11	c.781delA	p.R261fs	.	.	104	14	98	0	.	550
MAP7D2	256714	bcgsc.ca	37	X	20031688	20031688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAP7D2	NM_001168465	exon13	c.A1805G	p.K602R	.	.	100	4	152	0	.	195
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu	37	4	86985490	86985490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK10	NM_002753	exon11	c.1039delA	p.R347fs	.	.	177	11	230	0	.	1402
MAPK15	225689	hgsc.bcm.edu;broad.mit.edu	37	8	144801240	144801240	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPK15	NM_139021	exon6	c.495delC	p.L165fs	.	.	144	10	138	0	.	1378
MAPKAPK5	8550	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112330837	112330837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKAPK5	NM_139078	exon14	c.A1394T	p.E465V	.	.	95	40	143	0	.	1215
MAPKBP1	23005	hgsc.bcm.edu	37	15	42092080	42092080	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPKBP1	NM_001128608	exon3	c.174delC	p.D58fs	.	.	160	14	255	0	.	589
MAPT	4137	hgsc.bcm.edu;broad.mit.edu	37	17	44039763	44039763	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MAPT	NM_005910	exon2	c.60delG	p.L20fs	.	.	154	10	153	0	.	91
MARC1	64757	bcgsc.ca	37	1	220960447	220960447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022746	exon1	c.A161G	p.Q54R	.	.	50	4	52	0	.	.
MARCH5	54708	hgsc.bcm.edu;broad.mit.edu	37	10	94110929	94110929	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH5	NM_017824	exon6	c.802delA	p.K268fs	.	.	168	10	207	0	.	226
MARCH8	220972	hgsc.bcm.edu;broad.mit.edu	37	10	45954578	45954578	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MARCH8	NM_001002266	exon6	c.561delG	p.G187fs	.	.	128	10	199	0	.	68
MATN2	4147	bcgsc.ca	37	8	98991224	98991224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MATN2	NM_002380	exon6	c.A1069G	p.K357E	.	.	148	5	130	0	.	24
MATR3	9782	hgsc.bcm.edu;broad.mit.edu	37	5	138657644	138657644	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MATR3	NM_018834	exon10	c.1660delA	p.K554fs	.	.	137	10	152	0	.	91
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu	37	16	84118656	84118656	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MBTPS1	NM_003791	exon10	c.1218delG	p.G406fs	.	.	215	13	304	0	.	92
MCRS1	10445	bcgsc.ca	37	12	49953304	49953304	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MCRS1	NM_001012300	exon11	c.1057delG	p.D353fs	.	.	25	3	55	0	.	289
MCTP1	79772	bcgsc.ca	37	5	94353090	94353090	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MCTP1	NM_024717	exon2	c.A819G	p.L273L	.	.	109	5	107	0	.	92
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu	37	6	37605207	37605207	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MDGA1	NM_153487	exon17	c.2805delC	p.P935fs	.	.	212	13	289	0	.	91
MED12L	116931	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	151107817	151107817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED12L	NM_053002	exon36	c.C5397A	p.I1799I	.	.	86	32	166	0	.	576
MED13	9969	hgsc.bcm.edu;broad.mit.edu	37	17	60033826	60033826	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED13	NM_005121	exon24	c.5497delA	p.S1833fs	.	.	249	17	223	0	.	136
MED25	81857	hgsc.bcm.edu;broad.mit.edu	37	19	50339074	50339074	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MED25	NM_030973	exon16	c.1837delC	p.P613fs	.	.	150	11	195	0	.	91
MEIS1	4211	hgsc.bcm.edu;broad.mit.edu	37	2	66667704	66667704	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MEIS1	NM_002398	exon4	c.392delA	p.E131fs	.	.	256	18	346	0	.	226
METAP1D	254042	bcgsc.ca	37	2	172930349	172930349	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METAP1D	NM_199227	exon4	c.A366G	p.E122E	.	.	169	6	211	0	.	90
METTL18	92342	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	169762228	169762228	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL18	NM_033418	exon2	c.A609C	p.I203I	.	.	294	55	208	0	.	90
METTL4	64863	hgsc.bcm.edu;broad.mit.edu	37	18	2544668	2544668	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	METTL4	NM_022840	exon7	c.1165delA	p.T389fs	.	.	166	12	257	0	.	227
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu	37	15	44109627	44109627	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFAP1	NM_005926	exon2	c.99delA	p.K33fs	.	.	380	23	485	0	.	226
MFN1	55669	bcgsc.ca	37	3	179096509	179096509	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFN1	NM_033540	exon14	c.T1569G	p.P523P	.	.	208	7	288	2	.	155
MFSD1	64747	hgsc.bcm.edu;broad.mit.edu	37	3	158524843	158524843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MFSD1	NM_022736	exon4	c.491delT	p.I164fs	.	.	269	17	379	0	.	90
MGA	23269	bcgsc.ca	37	15	42059448	42059448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon24	c.9168delG	p.S3056fs	.	.	36	5	71	0	.	522
MGA	23269	hgsc.bcm.edu;broad.mit.edu	37	15	42054541	42054541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon22	c.7725delA	p.R2575fs	.	.	160	10	251	0	.	522
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42035016	42035016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGA	NM_001164273	exon15	c.G4858A	p.D1620N	.	.	48	19	70	0	.	522
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu	37	2	135107494	135107494	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MGAT5	NM_002410	exon9	c.1231delT	p.F411fs	.	.	130	11	199	0	.	93
MIA2	117153	broad.mit.edu;bcgsc.ca	37	14	39716860	39716860	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIA2	NM_054024	exon4	c.1082delA	p.E361fs	.	.	67	9	82	0	.	154
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu	37	22	18364031	18364031	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICAL3	NM_001136004	exon17	c.2280delA	p.K760fs	.	.	222	14	258	0	.	68
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu	37	11	12315123	12315123	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MICALCL	NM_032867	exon3	c.145delC	p.P49fs	.	.	143	10	138	0	.	91
MID2	11043	hgsc.bcm.edu;broad.mit.edu	37	X	107084012	107084012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MID2	NM_012216	exon2	c.117delC	p.D39fs	.	.	159	10	246	0	.	227
MIER2	54531	hgsc.bcm.edu;broad.mit.edu	37	19	334468	334468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIER2	NM_017550	exon3	c.175delG	p.E59fs	.	.	131	11	176	0	.	90
MIP	4284	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56848277	56848277	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MIP	NM_012064	exon1	c.G121T	p.V41F	.	.	334	127	439	0	.	91
MIR1-2	406905	hgsc.bcm.edu	37	18	19408972	19408972	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	178	11	213	0	.	.
MIR205HG	642587	hgsc.bcm.edu	37	1	209602687	209602687	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001104548	exon2	c.45delC	p.G15fs	.	.	196	14	164	0	.	.
MIR205HG	642587	hgsc.bcm.edu	37	1	209605666	209605666	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001104548	exon4	c.C281G	p.A94G	.	.	83	11	51	0	.	.
MIR548N	100302152	hgsc.bcm.edu	37	2	179363984	179363984	+	RNA	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	167	10	264	0	.	.
MLH1	4292	broad.mit.edu;bcgsc.ca	37	3	37067166	37067166	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLH1	NM_000249	exon12	c.1077delG	p.M359fs	.	.	60	7	82	0	.	2559
MLKL	197259	hgsc.bcm.edu;broad.mit.edu	37	16	74725195	74725195	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLKL	NM_152649	exon4	c.702delA	p.K234fs	.	.	140	10	196	0	.	561
MLL2	8085	broad.mit.edu;bcgsc.ca	37	12	49444053	49444053	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon11	c.3318delC	p.P1106fs	.	.	92	9	132	0	.	612
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49444268	49444268	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon11	c.3103delC	p.Q1035fs	.	.	226	15	311	0	.	612
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49420553	49420554	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL2	NM_003482	exon48	c.15195_15196del	p.5065_5066del	.	.	88	0	109	0	.	612
MLL4	8085	ucsc.edu;bcgsc.ca	37	19	36214634	36214634	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon8	c.C3060G	p.G1020G	.	.	49	6	110	0	.	697
MLL	4297	hgsc.bcm.edu;broad.mit.edu	37	11	118342966	118342966	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon3	c.1092delA	p.S364fs	.	.	251	15	348	0	.	1255
MLL	4297	hgsc.bcm.edu;broad.mit.edu	37	11	118377153	118377153	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL	NM_001197104	exon27	c.10546delG	p.G3516fs	.	.	108	10	134	0	.	1255
MLL4	8085	hgsc.bcm.edu;broad.mit.edu	37	19	36212560	36212560	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL4	NM_014727	exon3	c.2311delC	p.P771fs	.	.	103	9	137	0	.	697
MLL5	55904	bcgsc.ca	37	7	104753240	104753240	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL5	NM_018682	exon26	c.A5037C	p.P1679P	.	.	120	48	100	9	.	93
MLL5	55904	hgsc.bcm.edu;broad.mit.edu	37	7	104745930	104745930	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLL5	NM_018682	exon17	c.2241delA	p.G747fs	.	.	132	10	107	0	.	93
MLLT6	4302	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36861960	36861960	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLLT6	NM_005937	exon1	c.C75T	p.C25C	.	.	88	29	166	0	.	659
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu	37	12	122614541	122614541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MLXIP	NM_014938	exon6	c.792delC	p.V264fs	.	.	161	10	220	0	.	92
MMP16	4325	hgsc.bcm.edu;broad.mit.edu	37	8	89179946	89179946	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP16	NM_005941	exon4	c.661delC	p.H221fs	.	.	196	14	166	0	.	231
MMP28	79148	bcgsc.ca	37	17	34100350	34100350	+	RNA	SNP	G	G	C	rs201410342		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP28	.	.	.	.	.	.	110	2	120	0	.	91
MMP8	4317	hgsc.bcm.edu;broad.mit.edu	37	11	102587087	102587087	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MMP8	NM_002424	exon6	c.848delT	p.L283X	.	.	144	10	120	0	.	229
MOCOS	55034	hgsc.bcm.edu;broad.mit.edu	37	18	33785127	33785127	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MOCOS	NM_017947	exon6	c.1106delC	p.A369fs	.	.	200	12	261	0	.	91
MORC2	22880	bcgsc.ca	37	22	31333632	31333632	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MORC2	NM_014941	exon16	c.C1250G	p.P417R	.	.	84	5	107	0	.	92
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu	37	9	13123168	13123168	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPDZ	NM_003829	exon36	c.4937delG	p.G1646fs	.	.	147	10	203	0	.	231
MPV17L2	84769	hgsc.bcm.edu;broad.mit.edu	37	19	18305819	18305819	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MPV17L2	NM_032683	exon4	c.487delC	p.P163fs	.	.	138	10	192	0	.	90
MR1	3140	hgsc.bcm.edu;broad.mit.edu	37	1	181003146	181003146	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MR1	NM_001195035	exon2	c.3delG	p.M1fs	.	.	174	13	178	0	.	91
MRPL52	122704	bcgsc.ca	37	14	23302670	23302670	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MRPL52	NM_178336	exon4	c.A201G	p.K67K	.	.	83	4	134	0	.	90
MRPS18A	55168	broad.mit.edu;bcgsc.ca	37	6	43639595	43639595	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MRPS18A	NM_018135	exon6	c.495delA	p.K165fs	.	.	74	9	108	0	.	90
MS4A15	219995	bcgsc.ca	37	11	60531415	60531415	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MS4A15	NM_001098835	exon2	c.A209G	p.E70G	.	.	80	5	105	0	.	69
MSH2	4436	hgsc.bcm.edu	37	2	47630437	47630437	+	Frame_Shift_Del	DEL	T	T	-	rs63751056		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH2	NM_000251	exon1	c.107delT	p.L36fs	.	.	209	13	241	0	.	2445
MSH4	4438	hgsc.bcm.edu;broad.mit.edu	37	1	76269449	76269449	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MSH4	NM_002440	exon2	c.278delA	p.E93fs	.	.	148	10	169	0	.	660
MST1	4485	bcgsc.ca	37	3	49722912	49722912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.A1415C	p.D472A	.	.	422	23	364	0	.	278
MST1	4485	hgsc.bcm.edu	37	3	49722905	49722905	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.A1422C	p.P474P	.	.	464	21	389	0	.	278
MST1	4485	hgsc.bcm.edu	37	3	49722913	49722913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MST1	NM_020998	exon12	c.G1414A	p.D472N	.	.	420	22	365	0	.	278
MST1L	11223	broad.mit.edu;bcgsc.ca	37	1	17083875	17083875	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001271733	exon15	c.1922delG	p.G641fs	.	.	606	21	758	0	.	.
MTBP	27085	hgsc.bcm.edu;broad.mit.edu	37	8	121528183	121528183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTBP	NM_022045	exon18	c.1998delA	p.R666fs	.	.	177	11	169	0	.	228
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu	37	2	55473549	55473549	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTIF2	NM_002453	exon10	c.1030delA	p.M344fs	.	.	146	11	255	0	.	91
MTM1	4534	hgsc.bcm.edu;broad.mit.edu	37	X	149818284	149818284	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTM1	NM_000252	exon10	c.963delA	p.L321fs	.	.	166	11	211	0	.	228
MTMR1	8776	bcgsc.ca	37	X	149905090	149905090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MTMR1	NM_003828	exon10	c.1080delT	p.S360fs	.	.	51	5	71	0	.	131
MUC13	56667	hgsc.bcm.edu;broad.mit.edu	37	3	124646629	124646629	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC13	NM_033049	exon2	c.261delC	p.P87fs	.	.	248	15	259	0	.	90
MUC16	94025	bcgsc.ca	37	19	9087616	9087616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC16	NM_024690	exon1	c.A4199T	p.K1400I	.	.	551	10	716	1	.	566
MUC4	4585	hgsc.bcm.edu	37	3	195518110	195518110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC4	NM_018406	exon2	c.C341T	p.A114V	.	.	190	15	211	0	.	90
MUC5B	727897	bcgsc.ca	37	11	1260794	1260794	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_002458	exon27	c.3581delA	p.E1194fs	.	.	36	4	79	0	.	.
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu	37	11	1276641	1276641	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_002458	exon37	c.15919delC	p.P5307fs	.	.	145	10	251	0	.	.
MUC6	4588	hgsc.bcm.edu;broad.mit.edu	37	11	1024954	1024954	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUC6	NM_005961	exon24	c.3115delG	p.D1039fs	.	.	200	12	261	0	.	23
MUSK	4593	bcgsc.ca	37	9	113457797	113457797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MUSK	NM_001166281	exon4	c.A473G	p.D158G	.	.	89	4	115	0	.	1379
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu	37	13	77636737	77636737	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYCBP2	NM_015057	exon74	c.12768delA	p.K4256fs	.	.	174	13	218	0	.	236
MYD88	4615	broad.mit.edu;bcgsc.ca	37	3	38180510	38180510	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYD88	NM_002468	exon1	c.358delC	p.P120fs	.	.	71	7	101	0	.	901
MYH1	4619	bcgsc.ca	37	17	10415841	10415841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH1	NM_005963	exon12	c.T1031C	p.F344S	.	.	148	5	201	0	.	171
MYH14	79784	hgsc.bcm.edu;broad.mit.edu	37	19	50771494	50771494	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH14	NM_001145809	exon24	c.2903delG	p.R968fs	.	.	162	10	221	0	.	23
MYH15	22989	hgsc.bcm.edu;broad.mit.edu	37	3	108182059	108182059	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH15	NM_014981	exon17	c.1823delA	p.K608fs	.	.	191	12	278	0	.	73
MYH4	4622	bcgsc.ca	37	17	10358043	10358043	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH4	NM_017533	exon22	c.C2520A	p.I840I	.	.	335	13	354	0	.	102
MYH4	4622	hgsc.bcm.edu;broad.mit.edu	37	17	10369889	10369889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYH4	NM_017533	exon3	c.174delG	p.G58fs	.	.	262	17	360	0	.	102
MYO15A	51168	bcgsc.ca	37	17	18064755	18064755	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO15A	NM_016239	exon56	c.9511delT	p.F3171fs	.	.	46	7	87	0	.	97
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu	37	15	52688534	52688534	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO5A	NM_000259	exon11	c.1380delA	p.K460fs	.	.	181	12	263	0	.	93
MYO5C	55930	bcgsc.ca	37	15	52548857	52548857	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO5C	NM_018728	exon11	c.1374delA	p.K458fs	.	.	83	8	137	1	.	145
MYO9B	4650	bcgsc.ca	37	19	17306039	17306039	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYO9B	NM_001130065	exon22	c.3803delC	p.A1268fs	.	.	44	5	65	0	.	67
MYSM1	114803	broad.mit.edu;bcgsc.ca	37	1	59165688	59165688	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYSM1	NM_001085487	exon1	c.37delG	p.D13fs	.	.	82	8	107	0	.	501
MYSM1	114803	hgsc.bcm.edu;broad.mit.edu	37	1	59137586	59137586	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYSM1	NM_001085487	exon12	c.1617delA	p.K539fs	.	.	164	10	277	0	.	501
MYT1	4661	hgsc.bcm.edu;broad.mit.edu	37	20	62851088	62851088	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	MYT1	NM_004535	exon13	c.1994delA	p.E665fs	.	.	197	15	337	0	.	704
N4BP2	55728	bcgsc.ca	37	4	40123712	40123712	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	N4BP2	NM_018177	exon9	c.A3981T	p.E1327D	.	.	171	5	172	0	.	602
NAA15	80155	hgsc.bcm.edu;broad.mit.edu	37	4	140270718	140270718	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAA15	NM_057175	exon7	c.794delA	p.E265fs	.	.	163	11	218	0	.	92
NAGS	162417	hgsc.bcm.edu;broad.mit.edu	37	17	42084998	42084998	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAGS	NM_153006	exon6	c.1308delG	p.L436fs	.	.	154	11	259	0	.	90
NASP	4678	hgsc.bcm.edu;broad.mit.edu	37	1	46073041	46073041	+	Frame_Shift_Del	DEL	A	A	-	rs35351400		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NASP	NM_002482	exon6	c.458delA	p.E153fs	.	.	148	10	168	0	.	91
NAV3	89795	hgsc.bcm.edu;broad.mit.edu	37	12	78443808	78443808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NAV3	NM_014903	exon10	c.2059delA	p.K687fs	.	.	157	13	177	0	.	279
NBPF10	100132406	bcgsc.ca	37	1	145296403	145296403	+	Silent	SNP	C	C	T	rs4996269	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001039703	exon3	c.C325T	p.L109L	.	.	188	13	159	1	C|0.959;T|0.041	.
NBPF3	84224	hgsc.bcm.edu	37	1	21806573	21806573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NBPF3	NM_032264	exon11	c.T1238G	p.F413C	.	.	227	29	185	0	.	92
NBPF7	343505	bcgsc.ca	37	1	120378829	120378829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NBPF7	NM_001047980	exon7	c.A917G	p.K306R	.	.	81	4	106	0	.	24
NBPF9	400818	bcgsc.ca	37	1	144814731	144814731	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	212	38	207	0	.	.
NCAPH	23397	bcgsc.ca	37	2	97033081	97033081	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCAPH	NM_015341	exon15	c.A1968G	p.T656T	.	.	134	5	244	1	.	228
NCKAP1	10787	hgsc.bcm.edu;broad.mit.edu	37	2	183822266	183822266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP1	NM_205842	exon20	c.1958delA	p.K653fs	.	.	191	14	243	0	.	92
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu	37	12	50186232	50186232	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCKAP5L	NM_001037806	exon12	c.3789delC	p.P1263fs	.	.	149	13	165	0	.	68
NCL	4691	hgsc.bcm.edu	37	2	232325414	232325414	+	Missense_Mutation	SNP	T	T	A	rs199689485		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.A777T	p.E259D	.	.	218	22	302	0	.	230
NCL	4691	hgsc.bcm.edu	37	2	232325426	232325426	+	Missense_Mutation	SNP	A	A	T	rs74931394		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.T765A	p.D255E	.	.	236	18	321	0	.	230
NCL	4691	hgsc.bcm.edu	37	2	232325429	232325429	+	Missense_Mutation	SNP	T	T	A	rs144444417		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCL	NM_005381	exon4	c.A762T	p.E254D	.	.	240	18	331	0	T|1.000;A|0.000	230
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu	37	20	46252672	46252672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCOA3	NM_181659	exon4	c.101delA	p.E34fs	.	.	183	11	230	0	.	229
NCR2	9436	bcgsc.ca	37	6	41318522	41318522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NCR2	NM_004828	exon5	c.T751C	p.S251P	.	.	71	4	108	0	.	91
NDN	4692	bcgsc.ca	37	15	23932276	23932276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NDN	NM_002487	exon1	c.A89G	p.E30G	.	.	67	4	119	2	.	90
NEB	4703	bcgsc.ca	37	2	152349886	152349886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEB	NM_001271208	exon177	c.A24851G	p.N8284S	.	.	133	5	154	0	.	145
NEBL	10529	hgsc.bcm.edu;broad.mit.edu	37	10	21178796	21178796	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEBL	NM_006393	exon3	c.236delA	p.N79fs	.	.	160	11	219	0	.	92
NEFH	4744	hgsc.bcm.edu	37	22	29885722	29885722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEFH	NM_021076	exon4	c.T2093A	p.V698E	.	.	166	9	204	0	.	90
NEIL2	252969	bcgsc.ca	37	8	11629000	11629000	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEIL2	NM_001135748	exon3	c.44delC	p.S15fs	.	.	49	5	188	0	.	659
NEK5	341676	hgsc.bcm.edu;broad.mit.edu	37	13	52650224	52650224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEK5	NM_199289	exon19	c.1703delA	p.N568fs	.	.	171	11	162	0	.	334
NEMF	9147	hgsc.bcm.edu;broad.mit.edu	37	14	50267183	50267183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEMF	NM_004713	exon23	c.2327delA	p.N776fs	.	.	204	14	275	0	.	90
NEO1	4756	broad.mit.edu;bcgsc.ca	37	15	73545781	73545781	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEO1	NM_001172623	exon12	c.1935delA	p.R645fs	.	.	48	7	68	0	.	116
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu	37	7	31378032	31378032	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEUROD6	NM_022728	exon2	c.851delA	p.N284fs	.	.	158	10	123	0	.	92
NEXN	91624	hgsc.bcm.edu;broad.mit.edu	37	1	78401592	78401592	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NEXN	NM_144573	exon11	c.1336delA	p.K446fs	.	.	194	12	268	0	.	92
NHS	4810	hgsc.bcm.edu;broad.mit.edu	37	X	17745879	17745879	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHS	NM_198270	exon6	c.3590delA	p.E1197fs	.	.	158	11	216	0	.	197
NHSL1	57224	hgsc.bcm.edu;broad.mit.edu	37	6	138817355	138817355	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHSL1	NM_020464	exon3	c.355+1G>-	.	.	.	175	11	181	0	.	68
NHSL2	340527	bcgsc.ca	37	X	71359404	71359404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NHSL2	NM_001013627	exon6	c.T2006C	p.V669A	.	.	136	6	159	0	.	108
NIN	51199	hgsc.bcm.edu;broad.mit.edu	37	14	51233604	51233604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NIN	NM_020921	exon13	c.1439delA	p.N480fs	.	.	115	10	170	0	.	229
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu	37	5	37003425	37003425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NIPBL	NM_015384	exon16	c.3831delA	p.S1277fs	.	.	200	12	238	0	.	293
NKAIN1	79570	hgsc.bcm.edu;broad.mit.edu	37	1	31656681	31656681	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NKAIN1	NM_024522	exon4	c.454delC	p.L152fs	.	.	174	12	217	0	.	91
NLRC5	84166	broad.mit.edu;bcgsc.ca	37	16	57110735	57110735	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NLRC5	NM_032206	exon39	c.4756delA	p.N1586fs	.	.	57	7	99	0	.	159
NMUR2	56923	bcgsc.ca	37	5	151771819	151771819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NMUR2	NM_020167	exon4	c.C1181A	p.P394Q	.	.	308	8	501	0	.	526
NOC3L	64318	broad.mit.edu;bcgsc.ca	37	10	96101472	96101472	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOC3L	NM_022451	exon14	c.1602delT	p.F534fs	.	.	174	25	176	0	.	91
NOL6	65083	hgsc.bcm.edu;broad.mit.edu	37	9	33469208	33469208	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOL6	NM_022917	exon6	c.859delG	p.D287fs	.	.	165	10	212	0	.	92
NOM1	64434	hgsc.bcm.edu;broad.mit.edu	37	7	156755794	156755794	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOM1	NM_138400	exon6	c.1836delG	p.V612fs	.	.	157	12	130	0	.	90
NOS3	4846	bcgsc.ca	37	7	150696112	150696112	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOS3	NM_001160111	exon7	c.C895G	p.P299A	.	.	286	15	269	0	.	1011
NOSTRIN	115677	broad.mit.edu;bcgsc.ca	37	2	169721406	169721406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOSTRIN	NM_001171631	exon21	c.1618delA	p.K540fs	.	.	59	7	92	0	.	90
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu	37	1	120468081	120468081	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOTCH2	NM_024408	exon25	c.4358delG	p.G1453fs	.	.	154	10	239	0	.	1441
NOTCH4	4855	bcgsc.ca	37	6	32172066	32172066	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOTCH4	NM_004557	exon19	c.G2966C	p.G989A	.	.	212	6	267	0	.	1321
NOVA2	4858	bcgsc.ca	37	19	46444101	46444101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NOVA2	NM_002516	exon4	c.T499C	p.S167P	.	.	64	4	91	0	.	226
NPC1	4864	hgsc.bcm.edu;broad.mit.edu	37	18	21141327	21141327	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPC1	NM_000271	exon5	c.628delT	p.S210fs	.	.	129	10	182	0	.	92
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu	37	2	110881425	110881425	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPHP1	NM_000272	exon20	c.2145delT	p.F715fs	.	.	157	10	248	0	.	92
NPVF	64111	hgsc.bcm.edu	37	7	25266575	25266575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NPVF	NM_022150	exon2	c.T209A	p.V70D	.	.	327	18	331	0	.	91
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H2	NM_007121	exon6	c.G519A	p.Q173Q	.	.	81	12	176	0	G|0.903;A|0.097	186
NR1H4	9971	bcgsc.ca	37	12	100887161	100887161	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H4	NM_005123	exon3	c.60delT	p.S20fs	.	.	54	6	78	0	.	227
NR1H4	9971	hgsc.bcm.edu;broad.mit.edu	37	12	100904639	100904639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR1H4	NM_001206992	exon2	c.193delC	p.P65fs	.	.	261	17	407	0	.	227
NR2E3	10002	bcgsc.ca	37	15	72104367	72104367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NR2E3	NM_016346	exon4	c.422delC	p.S141fs	.	.	53	6	74	0	.	22
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	248	21	375	0	T|0.024;A|0.976	90
NRG4	145957	bcgsc.ca	37	15	76301620	76301620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRG4	NM_138573	exon3	c.T25C	p.C9R	.	.	50	4	73	0	.	522
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu	37	21	16339766	16339766	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRIP1	NM_003489	exon4	c.748delA	p.R250fs	.	.	145	12	178	0	.	186
NRXN2	9379	bcgsc.ca	37	11	64457919	64457919	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NRXN2	NM_015080	exon5	c.808delG	p.A270fs	.	.	91	9	92	0	.	232
NUDCD3	23386	hgsc.bcm.edu;broad.mit.edu	37	7	44425624	44425624	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDCD3	NM_015332	exon6	c.1072delG	p.A358fs	.	.	184	11	124	0	.	90
NUDT12	83594	hgsc.bcm.edu;broad.mit.edu	37	5	102895020	102895020	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDT12	NM_031438	exon3	c.356delA	p.N119fs	.	.	166	10	173	0	.	90
NUDT13	25961	bcgsc.ca	37	10	74874160	74874160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDT13	NM_015901	exon2	c.37delT	p.F13fs	.	.	54	6	86	0	.	90
NUDT16L1	84309	bcgsc.ca	37	16	4744015	4744015	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUDT16L1	NM_032349	exon2	c.190delG	p.G64fs	.	.	60	6	139	0	.	90
NUFIP2	57532	bcgsc.ca	37	17	27613198	27613198	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUFIP2	NM_020772	exon2	c.A1814G	p.D605G	.	.	179	6	272	1	.	138
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu	37	19	41174028	41174028	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUMBL	NM_004756	exon10	c.1175delG	p.G392fs	.	.	144	11	149	0	.	637
NUP50	10762	broad.mit.edu;bcgsc.ca	37	22	45574642	45574642	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP50	NM_007172	exon5	c.864delC	p.V288fs	.	.	321	14	607	0	.	68
NUP98	4928	hgsc.bcm.edu;broad.mit.edu	37	11	3720389	3720389	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	NUP98	NM_016320	exon25	c.3932delA	p.N1311fs	.	.	192	15	277	0	.	703
OBSCN	84033	bcgsc.ca	37	1	228434468	228434468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon14	c.G4273C	p.G1425R	.	.	387	12	339	1	.	403
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228560756	228560756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OBSCN	NM_001271223	exon105	c.C25148G	p.S8383C	.	.	184	40	125	0	.	403
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu	37	6	72011155	72011155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OGFRL1	NM_024576	exon7	c.759delT	p.S253fs	.	.	158	12	176	0	.	68
OLFM1	10439	bcgsc.ca	37	9	137967602	137967602	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLFM1	NM_014279	exon1	c.50delT	p.L17fs	.	.	30	3	90	0	.	70
OLFML3	56944	bcgsc.ca	37	1	114522173	114522173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLFML3	NM_020190	exon1	c.T35C	p.L12P	.	.	141	5	171	0	.	68
OLFML3	56944	hgsc.bcm.edu;broad.mit.edu	37	1	114524304	114524304	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLFML3	NM_020190	exon3	c.1134delC	p.N378fs	.	.	182	11	220	0	.	68
OLR1	4973	hgsc.bcm.edu;broad.mit.edu	37	12	10324608	10324608	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OLR1	NM_001172632	exon1	c.69delA	p.K23fs	.	.	203	16	270	0	.	69
OPA1	4976	hgsc.bcm.edu;broad.mit.edu	37	3	193332740	193332740	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OPA1	NM_130832	exon2	c.261delT	p.N87fs	.	.	179	11	240	0	.	68
OR10G9	219870	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123894415	123894415	+	Silent	SNP	G	G	C	rs150463109	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10G9	NM_001001953	exon1	c.G696C	p.G232G	.	.	376	172	441	0	G|0.997;T|0.003	92
OR10H1	26539	hgsc.bcm.edu;broad.mit.edu	37	19	15917904	15917904	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR10H1	NM_013940	exon1	c.944delA	p.N315fs	.	.	179	11	252	0	.	68
OR11H12	440153	bcgsc.ca	37	14	19378506	19378506	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR11H12	NM_001013354	exon1	c.913delT	p.Y305fs	.	.	400	4	570	0	.	24
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu	37	9	125316423	125316423	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR1N2	NM_001004457	exon1	c.975delA	p.G325fs	.	.	162	10	229	0	.	72
OR2A14	135941	hgsc.bcm.edu	37	7	143826732	143826732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2A14	NM_001001659	exon1	c.T527A	p.F176Y	.	.	281	14	304	0	.	90
OR2AT4	341152	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74799967	74799967	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2AT4	NM_001005285	exon1	c.C792T	p.Y264Y	.	.	146	69	235	0	.	69
OR2L8	391190	bcgsc.ca	37	1	248112916	248112916	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2L8	NM_001001963	exon1	c.C757G	p.P253A	.	.	491	13	346	0	.	70
OR2T35	403244	broad.mit.edu;bcgsc.ca	37	1	248802303	248802303	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR2T35	NM_001001827	exon1	c.257delT	p.L86fs	.	.	508	9	373	0	.	46
OR2T5	401993	broad.mit.edu;bcgsc.ca	37	1	248651925	248651925	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001004697	exon1	c.36delA	p.G12fs	.	.	1045	57	821	0	.	.
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu	37	11	55135387	55135387	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4A15	NM_001005275	exon1	c.28delT	p.F10fs	.	.	156	10	188	0	.	70
OR4C16	219428	bcgsc.ca	37	11	55339830	55339830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4C16	NM_001004701	exon1	c.C227G	p.T76S	.	.	199	7	249	0	.	70
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu	37	11	51515445	51515445	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4C46	NM_001004703	exon1	c.164delC	p.S55fs	.	.	200	13	302	0	.	69
OR4X1	390113	bcgsc.ca	37	11	48286257	48286257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR4X1	NM_001004726	exon1	c.C845T	p.P282L	.	.	220	6	292	0	.	71
OR52B6	340980	hgsc.bcm.edu;broad.mit.edu	37	11	5602667	5602667	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR52B6	NM_001005162	exon1	c.561delT	p.Y187fs	.	.	153	10	202	0	.	69
OR5H1	26341	broad.mit.edu;bcgsc.ca	37	3	97852025	97852025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR5H1	NM_001005338	exon1	c.484delT	p.F162fs	.	.	587	23	722	0	.	136
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu	37	11	55999651	55999651	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR5T2	NM_001004746	exon1	c.1011delA	p.K337fs	.	.	155	10	160	0	.	70
OR8H1	219469	hgsc.bcm.edu;broad.mit.edu	37	11	56057710	56057710	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR8H1	NM_001005199	exon1	c.829delT	p.Y277fs	.	.	222	14	279	0	.	71
OR8K3	219473	bcgsc.ca	37	11	56086601	56086601	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OR8K3	NM_001005202	exon1	c.T819C	p.A273A	.	.	173	6	227	0	.	70
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu	37	1	36888410	36888410	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSCP1	NM_145047	exon6	c.708delT	p.F236fs	.	.	197	12	243	0	.	4
OSMR	9180	hgsc.bcm.edu;broad.mit.edu	37	5	38917660	38917660	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OSMR	NM_003999	exon10	c.1298delC	p.A433fs	.	.	174	11	229	0	.	496
OTOGL	283310	bcgsc.ca	37	12	80764440	80764440	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_173591	exon55	c.6679delC	p.P2227fs	.	.	52	5	93	0	.	.
OTUB1	55611	bcgsc.ca	37	11	63764415	63764415	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OTUB1	NM_017670	exon5	c.423+2T>C	.	.	.	70	5	103	0	.	501
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu	37	20	18022253	18022253	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OVOL2	NM_021220	exon3	c.436delA	p.R146fs	.	.	146	10	190	0	.	68
OXR1	55074	hgsc.bcm.edu;broad.mit.edu	37	8	107726147	107726147	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	OXR1	NM_001198532	exon10	c.1893delA	p.V631fs	.	.	224	14	246	0	.	68
PALD1	27143	bcgsc.ca	37	10	72324145	72324145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_014431	exon19	c.A2288G	p.E763G	.	.	194	6	230	0	.	.
PALM2-AKAP2	445815	bcgsc.ca	37	9	112898992	112898992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PALM2-AKAP2	NM_007203	exon8	c.T1168C	p.S390P	.	.	161	7	240	0	.	475
PAN2	9924	hgsc.bcm.edu;broad.mit.edu	37	12	56716892	56716892	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN2	NM_001127460	exon17	c.2459delA	p.N820fs	.	.	151	10	189	0	.	702
PAN3	255967	hgsc.bcm.edu;broad.mit.edu	37	13	28748431	28748431	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAN3	NM_175854	exon2	c.453delT	p.A151fs	.	.	149	10	188	0	.	69
PANK2	80025	hgsc.bcm.edu;broad.mit.edu	37	20	3899427	3899427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PANK2	NM_153638	exon6	c.1646delT	p.L549fs	.	.	253	15	389	0	.	115
PAPOLA	10914	hgsc.bcm.edu;broad.mit.edu	37	14	97022557	97022557	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAPOLA	NM_032632	exon19	c.1811delT	p.I604fs	.	.	170	13	209	0	.	68
PARD3B	117583	hgsc.bcm.edu;broad.mit.edu	37	2	206305272	206305272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARD3B	NM_152526	exon19	c.2734delC	p.P912fs	.	.	215	14	297	0	.	140
PARN	5073	hgsc.bcm.edu;broad.mit.edu	37	16	14576541	14576541	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARN	NM_002582	exon22	c.1624delC	p.Q542fs	.	.	202	15	319	0	.	24
PARP1	142	bcgsc.ca	37	1	226570841	226570841	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP1	NM_001618	exon8	c.A1055G	p.K352R	.	.	198	7	129	0	.	727
PARP8	79668	hgsc.bcm.edu;broad.mit.edu	37	5	50129819	50129819	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP8	NM_001178055	exon25	c.2314delA	p.K772fs	.	.	159	11	242	0	.	586
PARP9	83666	hgsc.bcm.edu;broad.mit.edu	37	3	122274440	122274440	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARP9	NM_031458	exon4	c.683delA	p.N228fs	.	.	166	10	182	0	.	525
PARVB	29780	bcgsc.ca	37	22	44395452	44395452	+	Missense_Mutation	SNP	G	G	C	rs201332415	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PARVB	NM_001003828	exon2	c.G110C	p.W37S	.	.	185	7	219	0	.	226
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu	37	7	154768002	154768002	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PAXIP1	NM_007349	exon6	c.478delA	p.I160fs	.	.	179	12	196	0	.	228
PBX4	80714	hgsc.bcm.edu;broad.mit.edu	37	19	19681606	19681606	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PBX4	NM_025245	exon3	c.230delC	p.P77fs	.	.	138	11	199	0	.	154
PCDH8	5100	bcgsc.ca	37	13	53421098	53421098	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDH8	NM_032949	exon1	c.1474delG	p.D492fs	.	.	27	3	62	0	.	153
PCDHA7	56141	broad.mit.edu;bcgsc.ca	37	5	140214422	140214422	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHA7	NM_031852	exon1	c.454delT	p.F152fs	.	.	425	8	590	0	.	94
PCDHA7	56141	bcgsc.ca	37	5	140214413	140214413	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHA7	NM_031852	exon1	c.445delG	p.D149fs	.	.	411	6	590	0	.	94
PCDHB14	56122	bcgsc.ca	37	5	140605113	140605113	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHB14	NM_018934	exon1	c.2036delC	p.A679fs	.	.	40	4	100	0	.	91
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu	37	5	140603423	140603423	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHB14	NM_018934	exon1	c.346delT	p.F116fs	.	.	192	12	228	0	.	91
PCDHGA11	56105	hgsc.bcm.edu;broad.mit.edu	37	5	140803107	140803107	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_032091	exon1	c.2313delC	p.F771fs	.	.	230	14	267	0	.	.
PCDHGA2	56113	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	140720687	140720687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCDHGA2	NM_018915	exon1	c.C2149T	p.R717W	.	.	344	131	399	0	.	71
PCF11	51585	hgsc.bcm.edu;broad.mit.edu	37	11	82882908	82882908	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCF11	NM_015885	exon9	c.3709delT	p.F1237fs	.	.	132	11	178	0	.	23
PCGF2	7703	hgsc.bcm.edu;broad.mit.edu	37	17	36891838	36891838	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCGF2	NM_007144	exon11	c.673delC	p.L225fs	.	.	134	10	125	0	.	658
PCNX	22990	hgsc.bcm.edu;broad.mit.edu	37	14	71500186	71500186	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNX	NM_014982	exon17	c.3599delT	p.I1200fs	.	.	163	11	214	0	.	91
PCNXL2	80003	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	233334767	233334767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCNXL2	NM_014801	exon15	c.G2984T	p.G995V	.	.	478	312	398	0	.	91
PCNXL4	64430	bcgsc.ca	37	14	60585132	60585132	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022495	exon6	c.A962G	p.K321R	.	.	293	7	381	2	.	.
PCNXL4	64430	hgsc.bcm.edu;broad.mit.edu	37	14	60587948	60587948	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_022495	exon7	c.1275delT	p.R425fs	.	.	180	12	233	0	.	.
PCP4	5121	hgsc.bcm.edu;broad.mit.edu	37	21	41300935	41300935	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCP4	NM_006198	exon3	c.88delT	p.F30fs	.	.	190	12	240	0	.	514
PCYT1B	9468	bcgsc.ca	37	X	24605386	24605386	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PCYT1B	NM_001163265	exon5	c.T537C	p.D179D	.	.	60	4	69	0	.	130
PDCD2	5134	bcgsc.ca	37	6	170892800	170892800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDCD2	NM_002598	exon2	c.319delT	p.Y107fs	.	.	65	6	80	0	.	227
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu	37	19	10543197	10543197	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDE4A	NM_001111309	exon1	c.87delC	p.F29fs	.	.	206	13	259	0	.	523
PDIA4	9601	hgsc.bcm.edu;broad.mit.edu	37	7	148702444	148702444	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA4	NM_004911	exon9	c.1311delA	p.K437fs	.	.	155	10	145	0	.	524
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu	37	3	122869147	122869147	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDIA5	NM_006810	exon14	c.1209delG	p.V403fs	.	.	145	10	141	0	.	91
PDILT	204474	hgsc.bcm.edu;broad.mit.edu	37	16	20387460	20387460	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDILT	NM_174924	exon4	c.473delT	p.L158fs	.	.	133	10	226	0	.	153
PDLIM7	9260	hgsc.bcm.edu;broad.mit.edu	37	5	176918124	176918124	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDLIM7	NM_213636	exon6	c.422delC	p.P141fs	.	.	154	10	224	0	.	153
PDPK1	5170	hgsc.bcm.edu;broad.mit.edu	37	16	2607955	2607955	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDPK1	NM_001261816	exon2	c.276delT	p.S92fs	.	.	208	16	340	0	.	1295
PDS5B	23047	bcgsc.ca	37	13	33332689	33332689	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDS5B	NM_015032	exon28	c.T3207C	p.C1069C	.	.	79	5	106	0	.	94
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu	37	5	32089076	32089076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDZD2	NM_178140	exon19	c.5522delA	p.Q1841fs	.	.	147	10	128	0	.	563
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu	37	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PDZD4	NM_032512	exon2	c.175delG	p.D59fs	.	.	163	10	246	0	.	193
PELP1	27043	hgsc.bcm.edu;broad.mit.edu	37	17	4576386	4576386	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PELP1	NM_014389	exon16	c.1900delC	p.R634fs	.	.	170	11	180	0	.	24
PER1	5187	bcgsc.ca	37	17	8053871	8053871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PER1	NM_002616	exon2	c.T154C	p.S52P	.	.	186	6	293	0	.	723
PFAS	5198	hgsc.bcm.edu;broad.mit.edu	37	17	8167127	8167127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFAS	NM_012393	exon15	c.1664delG	p.W555fs	.	.	125	10	206	0	.	94
PFKL	5211	broad.mit.edu;bcgsc.ca	37	21	45744776	45744776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKL	NM_002626	exon18	c.A1853G	p.D618G	.	.	190	8	261	1	.	251
PFKP	5214	hgsc.bcm.edu;broad.mit.edu	37	10	3155593	3155593	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PFKP	NM_002627	exon13	c.1254delG	p.V418fs	.	.	147	12	164	0	.	253
PGAM4	441531	hgsc.bcm.edu;broad.mit.edu	37	X	77224433	77224433	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGAM4	NM_001029891	exon1	c.703delG	p.D235fs	.	.	151	11	227	0	.	40
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu	37	1	249211954	249211954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGBD2	NM_170725	exon3	c.1171delA	p.K391fs	.	.	232	14	161	0	.	91
PGC	5225	hgsc.bcm.edu;broad.mit.edu	37	6	41708310	41708310	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGC	NM_002630	exon6	c.686delG	p.G229fs	.	.	150	13	153	0	.	90
PGLYRP2	114770	bcgsc.ca	37	19	15580658	15580658	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGLYRP2	NM_052890	exon4	c.1426delC	p.R476fs	.	.	40	4	104	0	.	93
PGM2L1	283209	ucsc.edu;bcgsc.ca	37	11	74056546	74056546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PGM2L1	NM_173582	exon9	c.G1186T	p.A396S	.	.	90	38	110	2	.	91
PHEX	5251	bcgsc.ca	37	X	22108608	22108608	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHEX	NM_000444	exon6	c.725delC	p.A242fs	.	.	41	4	68	0	.	132
PHF21A	51317	hgsc.bcm.edu;broad.mit.edu	37	11	45992680	45992680	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF21A	NM_016621	exon7	c.599delA	p.N200fs	.	.	265	17	395	0	.	92
PHF2	5253	broad.mit.edu;bcgsc.ca	37	9	96416694	96416694	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF2	NM_005392	exon7	c.790-1G>-	.	.	.	59	8	64	0	.	91
PHF3	23469	hgsc.bcm.edu;broad.mit.edu	37	6	64404551	64404551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHF3	NM_015153	exon5	c.2577delG	p.M859fs	.	.	166	11	221	0	.	229
PHKB	5257	hgsc.bcm.edu;broad.mit.edu	37	16	47630338	47630338	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHKB	NM_000293	exon13	c.1259delA	p.E420fs	.	.	134	11	114	0	.	154
PHKG2	5261	broad.mit.edu;bcgsc.ca	37	16	30767698	30767698	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHKG2	NM_001172432	exon8	c.658delG	p.G220fs	.	.	68	7	91	0	.	334
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118526376	118526376	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLDB1	NM_001144758	exon21	c.C3936T	p.Y1312Y	.	.	64	27	88	0	.	90
PHLPP2	23035	hgsc.bcm.edu;broad.mit.edu	37	16	71724608	71724608	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHLPP2	NM_015020	exon3	c.423delA	p.K141fs	.	.	145	10	182	0	.	91
PHOX2B	8929	bcgsc.ca	37	4	41748163	41748163	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHOX2B	NM_003924	exon3	c.606delC	p.P202fs	.	.	29	4	59	0	.	1970
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	7	77567067	77567067	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PHTF2	NM_001127357	exon11	c.1277delA	p.E426fs	.	.	153	13	146	0	.	23
PIGW	284098	hgsc.bcm.edu;broad.mit.edu	37	17	34893402	34893402	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIGW	NM_178517	exon2	c.452delT	p.L151fs	.	.	247	15	311	0	.	226
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu	37	12	18716360	18716360	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3C2G	NM_004570	exon27	c.3707delA	p.E1236fs	.	.	131	10	164	0	.	1312
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu	37	3	138461437	138461437	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3CB	NM_006219	exon3	c.584delG	p.G195fs	.	.	151	12	216	0	.	1311
PIK3R3	8503	hgsc.bcm.edu;broad.mit.edu	37	1	46531807	46531807	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIK3R3	NM_001114172	exon6	c.540delA	p.K180fs	.	.	188	14	261	0	.	1309
PIPSL	266971	hgsc.bcm.edu;broad.mit.edu	37	10	95720247	95720247	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	347	21	434	0	.	.
PIWIL3	440822	hgsc.bcm.edu;broad.mit.edu	37	22	25153878	25153878	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PIWIL3	NM_001008496	exon4	c.352delA	p.T118fs	.	.	138	12	177	0	.	93
PKD1L2	114780	bcgsc.ca	37	16	81145808	81145808	+	RNA	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKD1L2	.	.	.	.	.	.	134	5	166	0	.	92
PKD1L2	114780	bcgsc.ca	37	16	81181808	81181808	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKD1L2	.	.	.	.	.	.	158	16	204	1	.	92
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu	37	6	51503672	51503672	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_138694	exon64	c.11481delT	p.F3827fs	.	.	165	10	210	0	.	603
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu	37	6	51927342	51927342	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKHD1	NM_170724	exon14	c.1093delT	p.W365fs	.	.	163	10	217	0	.	603
PKN2	5586	hgsc.bcm.edu;broad.mit.edu	37	1	89273411	89273411	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKN2	NM_006256	exon15	c.2055delA	p.I685fs	.	.	191	14	195	0	.	522
PKP3	11187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	397014	397014	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP3	NM_007183	exon3	c.G513A	p.G171G	.	.	40	17	37	0	.	91
PKP4	8502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	159499020	159499020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PKP4	NM_001005476	exon11	c.A1718G	p.K573R	.	.	126	43	130	0	.	97
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu	37	19	48558214	48558214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLA2G4C	NM_001159322	exon15	c.1380delC	p.P460fs	.	.	173	11	182	0	.	92
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42377319	42377319	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLA2G4D	NM_178034	exon6	c.446delA	p.N149fs	.	.	116	12	138	0	.	136
PLAU	5328	hgsc.bcm.edu;broad.mit.edu	37	10	75673438	75673438	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLAU	NM_002658	exon7	c.602delG	p.R201fs	.	.	217	13	285	0	.	118
PLB1	151056	hgsc.bcm.edu;broad.mit.edu	37	2	28820879	28820879	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLB1	NM_153021	exon34	c.2329delG	p.G777fs	.	.	178	11	225	0	.	141
PLBD1	79887	hgsc.bcm.edu;broad.mit.edu	37	12	14693810	14693810	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLBD1	NM_024829	exon4	c.446delA	p.N149fs	.	.	165	12	211	0	.	90
PLCB4	5332	bcgsc.ca	37	20	9288526	9288526	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLCB4	NM_182797	exon2	c.65delT	p.V22fs	.	.	51	6	93	0	.	274
PLCD3	113026	bcgsc.ca	37	17	43192549	43192549	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLCD3	.	.	.	.	.	.	166	2	200	0	.	703
PLCH1	23007	hgsc.bcm.edu;broad.mit.edu	37	3	155199916	155199916	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLCH1	NM_001130960	exon23	c.3923delC	p.P1308fs	.	.	200	13	247	0	.	151
PLD1	5337	hgsc.bcm.edu;broad.mit.edu	37	3	171426604	171426604	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLD1	NM_002662	exon11	c.1086delT	p.F362fs	.	.	153	10	153	0	.	660
PLD2	5338	hgsc.bcm.edu;broad.mit.edu	37	17	4719139	4719139	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLD2	NM_001243108	exon14	c.1365delG	p.L455fs	.	.	233	14	377	0	.	291
PLEKHB2	55041	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131884342	131884342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHB2	NM_001267062	exon4	c.A276G	p.E92E	.	.	94	36	102	0	.	92
PLEKHG2	64857	bcgsc.ca	37	19	39911282	39911282	+	Missense_Mutation	SNP	T	T	C	rs75277380		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG2	NM_022835	exon12	c.T1280C	p.L427P	.	.	152	5	201	0	T|0.500;C|0.500	274
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu	37	19	39906055	39906055	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG2	NM_022835	exon4	c.455delT	p.I152fs	.	.	206	13	220	0	.	274
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu	37	5	163580	163580	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHG4B	NM_052909	exon11	c.2325delC	p.S775fs	.	.	195	12	167	0	.	228
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu	37	17	40823012	40823012	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon9	c.1421delA	p.N474fs	.	.	159	10	194	0	.	158
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu	37	17	40823047	40823047	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHH3	NM_024927	exon9	c.1386delG	p.G462fs	.	.	117	10	136	0	.	158
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu	37	1	150129661	150129661	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLEKHO1	NM_016274	exon5	c.506delG	p.R169fs	.	.	142	10	131	0	.	226
PLEKHS1	79949	bcgsc.ca	37	10	115529653	115529653	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_024889	exon7	c.A546G	p.Q182Q	.	.	62	4	92	0	.	.
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu	37	19	4512723	4512723	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLIN4	NM_001080400	exon3	c.1207delG	p.A403fs	.	.	231	14	336	0	.	68
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu	37	3	48457527	48457527	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLXNB1	NM_001130082	exon18	c.3530delG	p.G1177fs	.	.	183	13	260	0	.	293
PLXNC1	10154	bcgsc.ca	37	12	94692568	94692568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PLXNC1	NM_005761	exon27	c.A4235G	p.N1412S	.	.	63	4	57	0	.	92
PMS1	5378	hgsc.bcm.edu;broad.mit.edu	37	2	190719401	190719401	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PMS1	NM_001128144	exon9	c.1403delA	p.E468fs	.	.	121	10	171	0	.	1396
PNLIPRP1	5407	bcgsc.ca	37	10	118365014	118365014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNLIPRP1	NM_006229	exon12	c.C1289T	p.P430L	.	.	132	6	212	0	.	154
PNLIPRP3	119548	bcgsc.ca	37	10	118231366	118231366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNLIPRP3	NM_001011709	exon10	c.A1147G	p.K383E	.	.	172	7	220	2	.	91
PNMA3	29944	bcgsc.ca	37	X	152226664	152226664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNMA3	NM_013364	exon2	c.1252delG	p.G418fs	.	.	58	6	146	0	.	600
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu	37	2	55887311	55887311	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PNPT1	NM_033109	exon15	c.1265delA	p.N422fs	.	.	157	10	123	0	.	90
POC5	134359	hgsc.bcm.edu;broad.mit.edu	37	5	74998581	74998581	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POC5	NM_001099271	exon5	c.362delT	p.F121fs	.	.	173	15	259	0	.	45
POLA1	5422	hgsc.bcm.edu;broad.mit.edu	37	X	24745091	24745091	+	Frame_Shift_Del	DEL	T	T	-	rs34146393		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLA1	NM_016937	exon14	c.1416delT	p.T472fs	.	.	165	10	197	0	.	229
POLE2	5427	hgsc.bcm.edu;broad.mit.edu	37	14	50141076	50141076	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLE2	NM_001197331	exon4	c.315delA	p.K105fs	.	.	163	10	236	0	.	229
POLR2A	5430	bcgsc.ca	37	17	7404992	7404992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2A	NM_000937	exon14	c.A2293C	p.N765H	.	.	217	7	263	0	.	91
POLR2B	5431	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57883331	57883331	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2B	NM_000938	exon15	c.A2078G	p.Y693C	.	.	357	153	440	1	.	92
POLR2J2	246721	broad.mit.edu;bcgsc.ca	37	7	102309364	102309364	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POLR2J2	NM_032959	exon2	c.138delA	p.K46fs	.	.	1184	23	1073	0	.	68
POLR2J3	548644	broad.mit.edu;bcgsc.ca	37	7	102210294	102210294	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001097615	exon2	c.128delA	p.N43fs	.	.	3558	79	3276	0	.	.
POMT1	10585	broad.mit.edu;bcgsc.ca	37	9	134395568	134395568	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POMT1	NM_007171	exon17	c.1752delC	p.H584fs	.	.	70	7	133	0	.	91
POTEJ	653781	broad.mit.edu;bcgsc.ca	37	2	131414388	131414388	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	501	12	633	0	.	.
POU3F4	5456	bcgsc.ca	37	X	82764044	82764044	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	POU3F4	NM_000307	exon1	c.T712C	p.L238L	.	.	253	7	306	0	.	131
PPA1	5464	hgsc.bcm.edu	37	10	71969413	71969413	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.T540C	p.P180P	.	.	245	18	318	0	.	153
PPA1	5464	hgsc.bcm.edu;bcgsc.ca	37	10	71969338	71969338	+	Silent	SNP	C	C	A	rs79719906	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.G615T	p.A205A	.	.	174	18	246	0	C|0.987;A|0.013	153
PPA1	5464	hgsc.bcm.edu;bcgsc.ca	37	10	71969401	71969401	+	Silent	SNP	T	T	C	rs150430650		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPA1	NM_021129	exon7	c.A552G	p.E184E	.	.	252	18	337	0	.	153
PPIC	5480	hgsc.bcm.edu;broad.mit.edu	37	5	122364469	122364469	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPIC	NM_000943	exon4	c.325+1G>-	.	.	.	164	10	211	0	.	91
PPP1R3F	89801	bcgsc.ca	37	X	49138448	49138448	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP1R3F	NM_033215	exon3	c.G1065A	p.E355E	.	.	72	4	93	0	.	229
PPP1R9A	55607	hgsc.bcm.edu	37	7	94855296	94855296	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP1R9A	NM_001166160	exon8	c.A1980T	p.E660D	.	.	99	7	139	0	.	208
PPP2R3A	5523	bcgsc.ca	37	3	135720746	135720746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PPP2R3A	NM_002718	exon2	c.A406G	p.N136D	.	.	71	4	98	0	.	662
PRCP	5547	hgsc.bcm.edu;broad.mit.edu	37	11	82536121	82536121	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRCP	NM_199418	exon10	c.1381delG	p.D461fs	.	.	173	11	245	0	.	91
PRDM6	93166	hgsc.bcm.edu;broad.mit.edu	37	5	122425749	122425749	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001136239	exon2	c.40delA	p.K14fs	.	.	171	12	256	0	.	.
PREX2	80243	hgsc.bcm.edu;broad.mit.edu	37	8	68995503	68995503	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PREX2	NM_025170	exon18	c.1907delT	p.I636fs	.	.	160	10	157	0	.	390
PRG4	10216	hgsc.bcm.edu;broad.mit.edu	37	1	186282017	186282017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRG4	NM_005807	exon12	c.4108delT	p.F1370fs	.	.	193	13	148	0	.	91
PRICKLE1	144165	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	42858256	42858256	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRICKLE1	NM_001144882	exon7	c.T1580C	p.L527P	.	.	266	96	328	0	.	518
PRKACB	5567	hgsc.bcm.edu;broad.mit.edu	37	1	84644892	84644892	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKACB	NM_182948	exon2	c.220delT	p.F74fs	.	.	254	16	220	0	.	1083
PRKACB	5567	hgsc.bcm.edu;broad.mit.edu	37	1	84679946	84679946	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKACB	NM_182948	exon9	c.1017delA	p.I339fs	.	.	133	13	166	0	.	1083
PRKD2	25865	hgsc.bcm.edu	37	19	47219519	47219519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKD2	NM_016457	exon1	c.109delC	p.Q37fs	.	.	182	11	223	0	.	759
PRKDC	5591	bcgsc.ca	37	8	48805816	48805816	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKDC	.	.	.	.	.	.	255	2	262	0	.	1515
PRKG2	5593	hgsc.bcm.edu	37	4	82027025	82027025	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRKG2	NM_006259	exon15	c.2005delA	p.M669fs	.	.	169	10	230	0	.	524
PRMT5	10419	hgsc.bcm.edu;broad.mit.edu	37	14	23391406	23391406	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_006109	exon16	c.1740delT	p.F580fs	.	.	135	12	193	0	.	91
PRMT5	10419	hgsc.bcm.edu;broad.mit.edu	37	14	23398414	23398414	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRMT5	NM_001039619	exon1	c.21delG	p.G7fs	.	.	181	12	191	0	.	91
PROCA1	147011	hgsc.bcm.edu;broad.mit.edu	37	17	27030897	27030897	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROCA1	NM_152465	exon4	c.690delA	p.K230fs	.	.	241	15	314	0	.	91
PROL1	58503	hgsc.bcm.edu;broad.mit.edu	37	4	71275514	71275514	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROL1	NM_021225	exon3	c.469delC	p.P157fs	.	.	298	24	461	0	.	135
PROX1	5629	hgsc.bcm.edu;broad.mit.edu	37	1	214209037	214209037	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PROX1	NM_001270616	exon5	c.2074delT	p.F692fs	.	.	271	17	249	0	.	654
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu	37	17	1554134	1554134	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRPF8	NM_006445	exon43	c.6970delG	p.E2324fs	.	.	126	11	133	0	.	525
PRR12	57479	hgsc.bcm.edu;broad.mit.edu	37	19	50123635	50123635	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR12	NM_020719	exon10	c.5524delA	p.K1842fs	.	.	185	12	219	0	.	70
PRR22	163154	hgsc.bcm.edu;broad.mit.edu	37	19	5783634	5783634	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRR22	NM_001134316	exon3	c.624delA	p.P208fs	.	.	183	11	265	0	.	90
PRRC2A	7916	hgsc.bcm.edu;broad.mit.edu	37	6	31602310	31602310	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PRRC2A	NM_004638	exon20	c.4911delT	p.P1637fs	.	.	110	10	126	0	.	156
PSD3	23362	bcgsc.ca	37	8	18490296	18490296	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSD3	NM_015310	exon11	c.2237delA	p.K746fs	.	.	100	11	247	1	.	93
PSD4	23550	hgsc.bcm.edu;broad.mit.edu	37	2	113950863	113950863	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSD4	NM_012455	exon8	c.1948delG	p.G650fs	.	.	166	10	183	0	.	229
PSMD12	5718	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65346351	65346351	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PSMD12	NM_002816	exon4	c.A399G	p.E133E	.	.	154	47	137	0	.	90
PTCD2	79810	hgsc.bcm.edu;broad.mit.edu	37	5	71648518	71648518	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCD2	NM_024754	exon9	c.879delA	p.L293fs	.	.	201	12	303	0	.	90
PTCH2	8643	hgsc.bcm.edu;broad.mit.edu	37	1	45293130	45293130	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_001166292	exon15	c.2315delC	p.P772fs	.	.	190	13	242	0	.	851
PTCH2	8643	hgsc.bcm.edu;broad.mit.edu	37	1	45296538	45296538	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTCH2	NM_001166292	exon6	c.795delC	p.P265fs	.	.	164	11	241	0	.	851
PTDSS2	81490	hgsc.bcm.edu;broad.mit.edu	37	11	489639	489639	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTDSS2	NM_030783	exon10	c.1021delC	p.P341fs	.	.	181	11	260	0	.	90
PTH1R	5745	bcgsc.ca	37	3	46940820	46940820	+	Missense_Mutation	SNP	T	T	C	rs201499957		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTH1R	NM_001184744	exon9	c.T862C	p.F288L	.	.	166	6	241	1	T|1.000;C|0.000	522
PTK2B	2185	bcgsc.ca	37	8	27300454	27300454	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTK2B	NM_173174	exon27	c.2102delC	p.T701fs	.	.	46	5	94	0	.	1378
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87735675	87735675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN13	NM_080685	exon48	c.C7444A	p.Q2482K	.	.	404	180	565	0	.	230
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu	37	1	214588042	214588042	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPN14	NM_005401	exon4	c.372delA	p.K124fs	.	.	297	20	213	0	.	290
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu	37	1	198717290	198717290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRC	NM_002838	exon27	c.2900delA	p.E967fs	.	.	137	11	95	0	.	295
PTPRT	11122	hgsc.bcm.edu	37	20	40944372	40944372	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRT	NM_007050	exon12	c.2130delA	p.K710fs	.	.	199	12	245	0	.	664
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu	37	7	121650545	121650545	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTPRZ1	NM_001206838	exon12	c.1445delC	p.S482fs	.	.	194	12	184	0	.	699
PTX4	390667	bcgsc.ca	37	16	1536537	1536537	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PTX4	NM_001013658	exon3	c.C825A	p.T275T	.	.	193	6	264	0	.	90
PUM1	9698	hgsc.bcm.edu;broad.mit.edu	37	1	31418315	31418315	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PUM1	NM_001020658	exon18	c.2872delG	p.E958fs	.	.	136	10	201	0	.	92
PVRL3	25945	hgsc.bcm.edu;broad.mit.edu	37	3	110852954	110852954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PVRL3	NM_015480	exon6	c.1542delA	p.L514fs	.	.	172	11	235	0	.	92
PWP2	5822	broad.mit.edu;bcgsc.ca	37	21	45545895	45545895	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	PWP2	NM_005049	exon16	c.1969delT	p.F657fs	.	.	100	11	113	0	.	91
QRFPR	84109	hgsc.bcm.edu;broad.mit.edu	37	4	122253996	122253996	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	QRFPR	NM_198179	exon4	c.777delA	p.K259fs	.	.	222	15	300	0	.	90
QRICH2	84074	bcgsc.ca	37	17	74289876	74289876	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	QRICH2	NM_032134	exon4	c.G434A	p.G145E	.	.	242	8	192	0	.	94
R3HCC1	203069	bcgsc.ca	37	8	23150839	23150839	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	R3HCC1	NM_001136108	exon6	c.488delG	p.W163fs	.	.	38	4	123	0	.	69
RAB10	10890	hgsc.bcm.edu;broad.mit.edu	37	2	26350743	26350743	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAB10	NM_016131	exon5	c.442delT	p.F148fs	.	.	170	11	202	0	.	228
RAB28	9364	bcgsc.ca	37	4	13481074	13481074	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAB28	NM_004249	exon2	c.152delT	p.L51X	.	.	56	6	95	0	.	228
RABEP1	9135	bcgsc.ca	37	17	5250197	5250197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABEP1	NM_004703	exon6	c.A761G	p.K254R	.	.	54	4	71	0	.	659
RABEP1	9135	hgsc.bcm.edu;broad.mit.edu	37	17	5268420	5268420	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABEP1	NM_004703	exon11	c.1672delA	p.K558fs	.	.	191	16	208	0	.	659
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125772702	125772702	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RABGAP1	NM_012197	exon11	c.G1444C	p.E482Q	.	.	75	30	84	0	.	500
RAD50	10111	hgsc.bcm.edu;broad.mit.edu	37	5	131977933	131977933	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD50	NM_005732	exon25	c.3816delT	p.D1272fs	.	.	186	12	271	0	.	229
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	95390864	95390864	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAD54B	NM_001205263	exon12	c.1696-2A>G	.	.	.	97	28	101	0	.	539
RALGAPA1	253959	broad.mit.edu;bcgsc.ca	37	14	36217827	36217827	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RALGAPA1	NM_194301	exon10	c.1215delG	p.R405fs	.	.	144	7	153	0	.	138
RALGPS2	55103	hgsc.bcm.edu;broad.mit.edu	37	1	178780494	178780494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RALGPS2	NM_152663	exon6	c.342delA	p.L114fs	.	.	310	19	201	0	.	226
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu	37	5	170610183	170610183	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RANBP17	NM_022897	exon17	c.1878delA	p.L626fs	.	.	136	10	184	0	.	524
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu	37	9	6015153	6015153	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RANBP6	NM_012416	exon1	c.455delA	p.N152fs	.	.	162	10	182	0	.	229
RAPGEF4	11069	hgsc.bcm.edu;broad.mit.edu	37	2	173866030	173866030	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAPGEF4	NM_007023	exon17	c.1616delT	p.V539fs	.	.	120	10	217	0	.	274
RAPH1	65059	broad.mit.edu;bcgsc.ca	37	2	204304199	204304199	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAPH1	NM_213589	exon14	c.3714delC	p.P1238fs	.	.	72	9	76	0	.	1151
RARB	5915	hgsc.bcm.edu;broad.mit.edu	37	3	25470337	25470337	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RARB	NM_000965	exon1	c.115delG	p.G39fs	.	.	143	10	216	0	.	870
RARS2	57038	bcgsc.ca	37	6	88258343	88258343	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RARS2	NM_020320	exon6	c.417delA	p.K139fs	.	.	45	5	79	0	.	92
RASA1	5921	hgsc.bcm.edu;broad.mit.edu	37	5	86628366	86628366	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RASA1	NM_002890	exon3	c.735delT	p.R245fs	.	.	184	12	262	0	.	661
RASAL1	8437	bcgsc.ca	37	12	113565943	113565943	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RASAL1	NM_004658	exon4	c.163delG	p.E55fs	.	.	60	6	104	0	.	229
RASGRP3	25780	broad.mit.edu;bcgsc.ca	37	2	33783387	33783387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RASGRP3	NM_170672	exon17	c.1689delC	p.S563fs	.	.	71	7	104	0	.	661
RASGRP4	115727	bcgsc.ca	37	19	38912765	38912765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RASGRP4	NM_001146206	exon2	c.A52C	p.I18L	.	.	117	6	155	0	.	660
RAVER2	55225	bcgsc.ca	37	1	65280398	65280398	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RAVER2	NM_018211	exon11	c.1765delA	p.K589fs	.	.	54	6	76	0	.	135
RBFOX1	54715	broad.mit.edu;bcgsc.ca	37	16	7568384	7568384	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX1	NM_145891	exon2	c.323delC	p.T108fs	.	.	76	8	69	0	.	92
RBFOX1	54715	hgsc.bcm.edu;broad.mit.edu	37	16	7568215	7568215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX1	NM_145891	exon2	c.154delC	p.P52fs	.	.	159	11	197	0	.	92
RBFOX2	23543	hgsc.bcm.edu;broad.mit.edu	37	22	36161472	36161472	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBFOX2	NM_001082578	exon7	c.815delA	p.N272fs	.	.	183	11	243	0	.	90
RBM33	155435	hgsc.bcm.edu;broad.mit.edu	37	7	155537920	155537920	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM33	NM_053043	exon14	c.2603delA	p.Q868fs	.	.	227	15	259	0	.	23
RBM46	166863	hgsc.bcm.edu;broad.mit.edu	37	4	155720297	155720297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RBM46	NM_144979	exon4	c.983delA	p.E328fs	.	.	199	12	227	0	.	69
RC3H1	149041	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173921269	173921269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RC3H1	NM_172071	exon13	c.A2378T	p.D793V	.	.	231	49	157	4	.	92
RDX	5962	broad.mit.edu;bcgsc.ca	37	11	110135561	110135561	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RDX	NM_001260493	exon4	c.135delT	p.F45fs	.	.	56	8	70	0	.	90
RDX	5962	hgsc.bcm.edu;broad.mit.edu	37	11	110126047	110126047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RDX	NM_001260493	exon8	c.762delA	p.K254fs	.	.	234	16	270	0	.	90
REEP4	80346	bcgsc.ca	37	8	21996291	21996291	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REEP4	NM_025232	exon7	c.569delG	p.G190fs	.	.	54	6	98	0	.	91
REPS2	9185	hgsc.bcm.edu	37	X	17024379	17024379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REPS2	NM_001080975	exon2	c.309delT	p.Y103fs	.	.	155	10	170	0	.	131
REPS2	9185	hgsc.bcm.edu;broad.mit.edu	37	X	17088068	17088068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	REPS2	NM_004726	exon11	c.1285delA	p.K429fs	.	.	170	12	234	0	.	131
REREP3	646396	bcgsc.ca	37	15	22570771	22570771	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	38	4	77	0	.	.
RFC1	5981	hgsc.bcm.edu;broad.mit.edu	37	4	39322284	39322284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC1	NM_002913	exon9	c.814delA	p.T272fs	.	.	151	10	193	0	.	230
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	118464813	118464813	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A783G	p.T261T	.	.	69	23	116	0	.	227
RFC5	5985	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118464801	118464801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFC5	NM_007370	exon8	c.A771C	p.Q257H	.	.	72	30	123	0	.	227
RFT1	91869	hgsc.bcm.edu;broad.mit.edu	37	3	53126003	53126003	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RFT1	NM_052859	exon13	c.1542delG	p.G514fs	.	.	210	13	307	0	.	91
RGAG1	57529	broad.mit.edu;bcgsc.ca	37	X	109694826	109694826	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RGAG1	NM_020769	exon3	c.981delC	p.V327fs	.	.	65	7	89	0	.	132
RGS16	6004	bcgsc.ca	37	1	182569627	182569627	+	Missense_Mutation	SNP	G	G	C	rs140444624	byfrequency;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RGS16	NM_002928	exon5	c.C409G	p.H137D	.	.	256	9	216	0	G|0.999;A|0.001	227
RHOBTB1	9886	broad.mit.edu;bcgsc.ca	37	10	62648251	62648251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RHOBTB1	NM_014836	exon6	c.1175delA	p.K392fs	.	.	61	7	101	0	.	228
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu	37	5	95099309	95099309	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RHOBTB3	NM_014899	exon7	c.1146delA	p.L382fs	.	.	173	12	221	0	.	228
RHOXF2	84528	hgsc.bcm.edu	37	X	119210952	119210952	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_032498	exon2	c.381delG	p.G127fs	.	.	174	11	208	0	.	.
RILPL2	196383	hgsc.bcm.edu;broad.mit.edu	37	12	123907659	123907659	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RILPL2	NM_145058	exon3	c.537delA	p.K179fs	.	.	256	16	323	0	.	68
RIMS1	22999	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73102485	73102485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIMS1	NM_014989	exon31	c.C4591T	p.R1531C	.	.	80	33	143	0	.	144
RIN1	9610	hgsc.bcm.edu;broad.mit.edu	37	11	66103273	66103273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIN1	NM_004292	exon3	c.342delC	p.P114fs	.	.	121	10	164	0	.	710
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu	37	14	24808407	24808407	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RIPK3	NM_006871	exon3	c.285delA	p.K95fs	.	.	163	10	196	0	.	946
RNASE12	493901	hgsc.bcm.edu;broad.mit.edu	37	14	21058692	21058692	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNASE12	NM_001024822	exon1	c.191delA	p.K64fs	.	.	166	11	193	0	.	92
RNF111	54778	hgsc.bcm.edu;broad.mit.edu	37	15	59383348	59383348	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF111	NM_001270528	exon12	c.2761delA	p.K921fs	.	.	209	13	255	0	.	92
RNF123	63891	hgsc.bcm.edu;broad.mit.edu	37	3	49740083	49740083	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RNF123	NM_022064	exon20	c.1647delC	p.C549fs	.	.	182	11	250	0	.	584
RNU6-71	100873774	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56473249	56473249	+	RNA	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	66	32	95	0	.	.
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu	37	18	18690859	18690859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ROCK1	NM_005406	exon1	c.13delG	p.D5fs	.	.	144	10	180	0	.	1026
RPAP1	26015	hgsc.bcm.edu;broad.mit.edu	37	15	41819194	41819194	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPAP1	NM_015540	exon14	c.1819delG	p.A607fs	.	.	153	10	183	0	.	153
RPAP3	79657	bcgsc.ca	37	12	48060815	48060815	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPAP3	NM_024604	exon16	c.A1860G	p.E620E	.	.	152	5	166	0	.	69
RPE65	6121	hgsc.bcm.edu;broad.mit.edu	37	1	68905279	68905279	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPE65	NM_000329	exon7	c.690delC	p.P230fs	.	.	146	10	231	0	.	91
RPGR	6103	bcgsc.ca	37	X	38144857	38144857	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPGR	NM_001034853	exon15	c.A3395T	p.N1132I	.	.	111	5	135	0	.	131
RPGRIP1	57096	bcgsc.ca	37	14	21793406	21793406	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPGRIP1	NM_020366	exon15	c.A2231G	p.E744G	.	.	129	6	234	1	.	140
RPL23	9349	hgsc.bcm.edu;broad.mit.edu	37	17	37008859	37008859	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPL23	NM_000978	exon3	c.224delA	p.K75fs	.	.	215	13	293	0	.	226
RPL3	6122	bcgsc.ca	37	22	39711388	39711388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPL3	NM_000967	exon5	c.G674A	p.G225D	.	.	148	6	271	0	.	154
RPN1	6184	bcgsc.ca	37	3	128356853	128356853	+	Missense_Mutation	SNP	G	G	T	rs141345041	bycluster;alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPN1	NM_002950	exon3	c.C422A	p.P141Q	.	.	248	6	356	0	G|1.000;A|0.000	652
RPP38	10557	bcgsc.ca	37	10	15146102	15146102	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPP38	NM_183005	exon3	c.A789G	p.K263K	.	.	121	5	170	1	.	91
RPS27A	6233	hgsc.bcm.edu;broad.mit.edu	37	2	55461316	55461316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RPS27A	NM_001135592	exon4	c.165delT	p.T55fs	.	.	251	16	332	0	.	91
RREB1	6239	hgsc.bcm.edu;broad.mit.edu	37	6	7232097	7232097	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RREB1	NM_001003700	exon10	c.3765delC	p.F1255fs	.	.	181	11	247	0	.	144
RRN3	54700	hgsc.bcm.edu;broad.mit.edu	37	16	15162040	15162040	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RRN3	NM_018427	exon15	c.1539delT	p.F513fs	.	.	421	28	487	0	.	91
RRP7A	27341	hgsc.bcm.edu	37	22	42911202	42911202	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RRP7A	NM_015703	exon4	c.415delC	p.L139fs	.	.	167	12	231	0	.	91
RSPH1	89765	hgsc.bcm.edu;broad.mit.edu	37	21	43905780	43905780	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RSPH1	NM_080860	exon5	c.500delA	p.N167fs	.	.	199	12	269	0	.	227
RTN4RL1	146760	bcgsc.ca	37	17	1840163	1840163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_178568	exon2	c.T953C	p.L318P	.	.	176	6	255	1	.	.
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu	37	5	179004090	179004090	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RUFY1	NM_025158	exon6	c.843delT	p.D281fs	.	.	159	10	182	0	.	157
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu	37	9	35557957	35557957	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RUSC2	NM_014806	exon6	c.3030delT	p.H1010fs	.	.	148	10	205	0	.	91
RYR2	6262	bcgsc.ca	37	1	237893622	237893622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RYR2	NM_001035	exon77	c.A10901G	p.H3634R	.	.	169	5	112	0	.	158
RYR2	6262	hgsc.bcm.edu;broad.mit.edu	37	1	237778080	237778080	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	RYR2	NM_001035	exon37	c.5652delG	p.K1884fs	.	.	182	13	156	0	.	158
SACS	26278	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23929049	23929049	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SACS	NM_014363	exon8	c.G1702T	p.D568Y	.	.	143	46	180	0	.	298
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SALL1	NM_002968	exon2	c.G478A	p.G160S	.	.	169	17	212	0	.	98
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu	37	14	77845359	77845359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMD15	NM_001010860	exon1	c.1598delA	p.E533fs	.	.	193	12	278	0	.	90
SAMM50	25813	hgsc.bcm.edu;broad.mit.edu	37	22	44368791	44368791	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SAMM50	NM_015380	exon6	c.470delA	p.E157fs	.	.	143	11	209	0	.	91
SART1	9092	bcgsc.ca	37	11	65744188	65744188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SART1	NM_005146	exon14	c.A1808G	p.N603S	.	.	82	5	155	0	.	227
SATB1	6304	hgsc.bcm.edu;broad.mit.edu	37	3	18427923	18427923	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SATB1	NM_002971	exon8	c.1387delC	p.L463fs	.	.	152	11	227	0	.	228
SC5D	6309	bcgsc.ca	37	11	121174251	121174251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001024956	exon2	c.T167C	p.F56S	.	.	227	6	318	0	.	.
SCEL	8796	hgsc.bcm.edu;broad.mit.edu	37	13	78188077	78188077	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCEL	NM_144777	exon24	c.1438delA	p.K480fs	.	.	208	15	303	0	.	95
SCIN	85477	bcgsc.ca	37	7	12662454	12662454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCIN	NM_001112706	exon5	c.A695G	p.D232G	.	.	114	4	123	0	.	24
SCLT1	132320	hgsc.bcm.edu;broad.mit.edu	37	4	129873978	129873978	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCLT1	NM_144643	exon14	c.1164delA	p.K388fs	.	.	177	18	231	0	.	525
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu	37	3	38793861	38793861	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN10A	NM_006514	exon11	c.1604delG	p.G535fs	.	.	129	10	194	0	.	99
SCN1A	6323	hgsc.bcm.edu	37	2	166903299	166903299	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCN1A	NM_001165964	exon9	c.1358delA	p.K453fs	.	.	174	12	244	0	.	147
SCRN3	79634	hgsc.bcm.edu	37	2	175292599	175292599	+	Missense_Mutation	SNP	T	T	G	rs74729826	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SCRN3	NM_024583	exon8	c.T1251G	p.N417K	.	.	217	55	301	0	T|0.842;G|0.157	91
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu	37	1	177913790	177913790	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC16B	NM_033127	exon15	c.1787delT	p.L596X	.	.	133	11	106	0	.	93
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	121675303	121675303	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC23IP	NM_007190	exon8	c.1446delT	p.H482fs	.	.	99	10	108	0	.	93
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu	37	10	102249484	102249484	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC31B	NM_015490	exon22	c.3000delC	p.P1000fs	.	.	143	10	179	0	.	91
SEC61A1	29927	broad.mit.edu;bcgsc.ca	37	3	127788487	127788487	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC61A1	NM_013336	exon12	c.1413delG	p.M471fs	.	.	78	8	97	0	.	91
SEC63	11231	bcgsc.ca	37	6	108233930	108233930	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEC63	NM_007214	exon6	c.A563T	p.N188I	.	.	283	11	332	1	.	227
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49304846	49304846	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon12	c.1730delA	p.K577fs	.	.	141	10	165	0	.	136
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49304896	49304896	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon12	c.1680delA	p.K560fs	.	.	159	10	193	0	.	136
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu	37	15	49319614	49319614	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SECISBP2L	NM_001193489	exon7	c.983delA	p.N328fs	.	.	185	12	230	0	.	136
SEMA3E	9723	bcgsc.ca	37	7	83037733	83037733	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA3E	NM_012431	exon6	c.G621C	p.G207G	.	.	284	7	300	0	.	93
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu	37	3	50225339	50225339	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA3F	NM_004186	exon19	c.2149delC	p.P717fs	.	.	264	16	315	0	.	279
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu	37	15	48056088	48056088	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEMA6D	NM_153617	exon10	c.789delG	p.M263fs	.	.	193	12	301	0	.	138
SENP6	26054	hgsc.bcm.edu;broad.mit.edu	37	6	76312282	76312282	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP6	NM_001100409	exon1	c.42delT	p.T14fs	.	.	161	10	205	0	.	660
SENP7	57337	hgsc.bcm.edu	37	3	101051684	101051684	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SENP7	NM_020654	exon18	c.2503delA	p.R835fs	.	.	224	15	264	0	.	661
SEPT2	4735	hgsc.bcm.edu;broad.mit.edu	37	2	242275390	242275390	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEPT2	NM_001008491	exon6	c.218delA	p.E73fs	.	.	146	13	209	0	.	68
SERHL2	253190	hgsc.bcm.edu	37	22	42951001	42951001	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SERHL2	NM_014509	exon2	c.80delG	p.W27fs	.	.	170	10	228	0	.	22
SETD4	54093	hgsc.bcm.edu;broad.mit.edu	37	21	37418076	37418076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD4	NM_001007259	exon6	c.530delT	p.F177fs	.	.	165	10	216	0	.	154
SETD6	79918	hgsc.bcm.edu;broad.mit.edu	37	16	58550759	58550759	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SETD6	NM_001160305	exon5	c.719delC	p.S240fs	.	.	165	10	199	0	.	91
SEZ6	124925	hgsc.bcm.edu;broad.mit.edu	37	17	27284100	27284100	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6	NM_001098635	exon13	c.2655delC	p.P885fs	.	.	156	10	197	0	.	90
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu	37	16	29899871	29899871	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SEZ6L2	NM_001243332	exon6	c.1029delC	p.P343fs	.	.	150	10	134	0	.	92
SGCA	6442	hgsc.bcm.edu;broad.mit.edu	37	17	48245832	48245832	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGCA	NM_001135697	exon5	c.483delG	p.L161fs	.	.	163	12	235	0	.	92
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu	37	2	201436349	201436349	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SGOL2	NM_001160046	exon7	c.1280delA	p.E427fs	.	.	179	11	219	0	.	94
SH2D1A	4068	hgsc.bcm.edu;broad.mit.edu	37	X	123504064	123504064	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH2D1A	NM_001114937	exon3	c.240delA	p.I80fs	.	.	210	15	284	0	.	130
SH3GL1	6455	hgsc.bcm.edu;broad.mit.edu	37	19	4364123	4364123	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SH3GL1	NM_003025	exon5	c.427delC	p.L143fs	.	.	206	14	300	0	.	659
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	26620702	26620702	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHISA2	NM_001007538	exon2	c.837delC	p.P279fs	.	.	91	27	97	0	.	69
SHPRH	257218	bcgsc.ca	37	6	146248366	146248366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHPRH	NM_173082	exon15	c.T3187C	p.S1063P	.	.	119	5	153	0	.	92
SHROOM1	134549	bcgsc.ca	37	5	132159081	132159081	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SHROOM1	NM_133456	exon6	c.2087delC	p.P696fs	.	.	37	4	81	0	.	91
SI	6476	hgsc.bcm.edu;broad.mit.edu	37	3	164700065	164700065	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon47	c.5381delA	p.N1794fs	.	.	147	10	195	0	.	104
SI	6476	hgsc.bcm.edu;broad.mit.edu	37	3	164710135	164710135	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SI	NM_001041	exon42	c.4892delG	p.G1631fs	.	.	172	12	190	0	.	104
SIKE1	80143	hgsc.bcm.edu;broad.mit.edu	37	1	115321811	115321811	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SIKE1	NM_001102396	exon3	c.372delA	p.K124fs	.	.	151	11	196	0	.	227
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_207371	exon4	c.G1266A	p.E422E	.	.	81	5	92	0	.	.
SKP2	6502	hgsc.bcm.edu;broad.mit.edu	37	5	36170455	36170455	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SKP2	NM_032637	exon6	c.681delA	p.A227fs	.	.	197	12	240	0	.	1084
SLC12A1	6557	bcgsc.ca	37	15	48533767	48533767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A1	NM_001184832	exon10	c.T1271C	p.V424A	.	.	145	5	174	1	.	24
SLC12A1	6557	hgsc.bcm.edu;broad.mit.edu	37	15	48527143	48527143	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A1	NM_001184832	exon9	c.1157delT	p.I386fs	.	.	219	15	260	0	.	24
SLC12A4	6560	bcgsc.ca	37	16	67980424	67980424	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A4	NM_001145962	exon17	c.2360delG	p.G787fs	.	.	37	4	70	0	.	91
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu	37	5	1078065	1078065	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC12A7	NM_006598	exon12	c.1512delC	p.P504fs	.	.	192	13	174	0	.	138
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu	37	17	26817514	26817514	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC13A2	NM_001145975	exon3	c.421delG	p.G141fs	.	.	150	11	224	0	.	90
SLC16A7	9194	hgsc.bcm.edu;broad.mit.edu	37	12	60168856	60168856	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC16A7	NM_001270622	exon5	c.780delT	p.G260fs	.	.	157	10	185	0	.	91
SLC22A12	116085	bcgsc.ca	37	11	64359406	64359406	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC22A12	NM_144585	exon1	c.378delC	p.I126fs	.	.	54	5	77	0	.	91
SLC27A5	10998	hgsc.bcm.edu;broad.mit.edu	37	19	59010549	59010549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC27A5	NM_012254	exon8	c.1706delG	p.G569fs	.	.	170	11	253	0	.	90
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu	37	15	85431063	85431063	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC28A1	NM_201651	exon3	c.72delG	p.M24fs	.	.	157	11	234	0	.	93
SLC29A1	2030	hgsc.bcm.edu;broad.mit.edu	37	6	44199193	44199193	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC29A1	NM_004955	exon9	c.859delA	p.K287fs	.	.	175	11	155	0	.	154
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu	37	1	211751711	211751711	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC30A1	NM_021194	exon1	c.244delG	p.A82fs	.	.	168	10	153	0	.	93
SLC35F5	80255	hgsc.bcm.edu;broad.mit.edu	37	2	114493428	114493428	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC35F5	NM_025181	exon8	c.758delT	p.L253fs	.	.	204	14	279	0	.	90
SLC37A1	54020	bcgsc.ca	37	21	43999901	43999901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC37A1	NM_018964	exon20	c.A1577G	p.D526G	.	.	60	4	100	0	.	90
SLC38A3	10991	hgsc.bcm.edu	37	3	50251833	50251833	+	Splice_Site	SNP	A	A	G	rs201228948		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC38A3	NM_006841	exon3	c.102-1A>G	.	.	.	87	3	119	0	.	67
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu	37	10	18331679	18331679	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A12	NM_001145195	exon13	c.1993delT	p.F665fs	.	.	146	10	154	0	.	154
SLC39A7	7922	hgsc.bcm.edu;broad.mit.edu	37	6	33169107	33169107	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC39A7	NM_006979	exon1	c.85delG	p.G29fs	.	.	157	11	207	0	.	67
SLC46A3	283537	hgsc.bcm.edu;broad.mit.edu	37	13	29286951	29286951	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC46A3	NM_181785	exon3	c.926delT	p.L309X	.	.	148	10	206	0	.	69
SLC47A1	55244	bcgsc.ca	37	17	19451389	19451389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC47A1	NM_018242	exon4	c.T398C	p.L133P	.	.	135	5	185	2	.	90
SLC4A7	9497	hgsc.bcm.edu;broad.mit.edu	37	3	27439766	27439766	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC4A7	NM_003615	exon17	c.2479delT	p.W827fs	.	.	184	11	242	0	.	94
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu	37	X	115577930	115577930	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A14	NM_007231	exon7	c.813delC	p.F271fs	.	.	160	10	206	0	.	133
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu	37	17	28544272	28544272	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A4	NM_001045	exon6	c.749delG	p.G250fs	.	.	172	12	215	0	.	94
SLC6A5	9152	bcgsc.ca	37	11	20673868	20673868	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC6A5	NM_004211	exon15	c.C2104A	p.P702T	.	.	174	5	265	0	.	156
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu	37	8	17402081	17402081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC7A2	NM_001164771	exon3	c.618delT	p.D206fs	.	.	151	10	336	0	.	93
SLC7A9	11136	bcgsc.ca	37	19	33355590	33355590	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC7A9	NM_001243036	exon3	c.A180G	p.E60E	.	.	99	5	150	2	.	91
SLC9A2	6549	hgsc.bcm.edu;broad.mit.edu	37	2	103300596	103300596	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLC9A2	NM_003048	exon5	c.1226delT	p.V409fs	.	.	177	11	268	0	.	157
SLCO1A2	6579	bcgsc.ca	37	12	21422571	21422571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1A2	NM_134431	exon16	c.A1924G	p.T642A	.	.	178	6	235	0	.	157
SLCO1B1	10599	hgsc.bcm.edu;broad.mit.edu	37	12	21375253	21375253	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B1	NM_006446	exon13	c.1702delA	p.K568fs	.	.	183	13	254	0	.	97
SLCO1B3	28234	hgsc.bcm.edu;broad.mit.edu	37	12	21054325	21054325	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1B3	NM_019844	exon15	c.1789delA	p.K597fs	.	.	202	14	247	0	.	155
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu	37	12	20885884	20885884	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO1C1	NM_017435	exon10	c.1228delG	p.G410fs	.	.	151	11	201	0	.	97
SLCO3A1	28232	hgsc.bcm.edu;broad.mit.edu	37	15	92706012	92706012	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO3A1	NM_013272	exon10	c.1780delG	p.G594fs	.	.	213	13	330	0	.	91
SLCO4C1	353189	hgsc.bcm.edu;broad.mit.edu	37	5	101595975	101595975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLCO4C1	NM_180991	exon6	c.1070delA	p.N357fs	.	.	180	11	245	0	.	93
SLFN5	162394	bcgsc.ca	37	17	33586258	33586258	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLFN5	NM_144975	exon2	c.T549C	p.Y183Y	.	.	161	7	197	0	.	92
SLIT1	6585	hgsc.bcm.edu;broad.mit.edu	37	10	98766401	98766401	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLIT1	NM_003061	exon32	c.3418delG	p.A1140fs	.	.	139	10	193	0	.	94
SLTM	79811	bcgsc.ca	37	15	59204795	59204795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SLTM	NM_001013843	exon5	c.A528G	p.Q176Q	.	.	97	4	113	0	.	91
SMAD5	4090	bcgsc.ca	37	5	135513085	135513085	+	Silent	SNP	T	T	C	rs112079663		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMAD5	.	.	.	.	.	.	172	1	275	0	.	278
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu	37	4	95162076	95162076	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCAD1	NM_001128429	exon6	c.624delA	p.R208fs	.	.	190	12	279	0	.	229
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu	37	3	47703877	47703877	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMARCC1	NM_003074	exon20	c.2105delT	p.L702fs	.	.	184	12	281	0	.	228
SMC6	79677	hgsc.bcm.edu	37	2	17888597	17888597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMC6	NM_001142286	exon18	c.1895delA	p.N632fs	.	.	181	16	235	0	.	292
SMIM15	643155	hgsc.bcm.edu;broad.mit.edu	37	5	60455781	60455781	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001048249	exon3	c.218delA	p.K73fs	.	.	141	11	178	0	.	.
SMTNL1	219537	hgsc.bcm.edu;broad.mit.edu	37	11	57313466	57313466	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SMTNL1	NM_001105565	exon4	c.1030delC	p.P344fs	.	.	168	10	235	0	.	23
SNHG12	85028	hgsc.bcm.edu;broad.mit.edu	37	1	28906485	28906485	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	167	10	203	0	.	.
SNRPB2	6629	hgsc.bcm.edu;broad.mit.edu	37	20	16721542	16721542	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNRPB2	NM_003092	exon7	c.570delT	p.A190fs	.	.	152	10	193	0	.	153
SNRPC	6631	broad.mit.edu;bcgsc.ca	37	6	34735762	34735762	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNRPC	NM_003093	exon4	c.238delC	p.P80fs	.	.	69	8	107	0	.	90
SNTN	132203	hgsc.bcm.edu;broad.mit.edu	37	3	63645488	63645488	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNTN	NM_001080537	exon3	c.233delA	p.E78fs	.	.	163	10	208	0	.	69
SNX14	57231	bcgsc.ca	37	6	86259455	86259455	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNX14	NM_153816	exon8	c.A777G	p.K259K	.	.	74	4	94	0	.	226
SNX21	90203	bcgsc.ca	37	20	44463730	44463730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SNX21	NM_033421	exon3	c.T422C	p.V141A	.	.	106	6	137	0	.	290
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu	37	18	8783591	8783591	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_015210	exon6	c.481delA	p.K161fs	.	.	190	13	256	0	.	.
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	186598269	186598273	+	Frame_Shift_Del	DEL	TCCTG	TCCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCCTG	TCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SORBS2	NM_001145673	exon5	c.370_374del	p.124_125del	.	.	126	41	169	0	.	91
SOX2	6657	hgsc.bcm.edu	37	3	181431356	181431356	+	RNA	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SOX2	.	.	.	.	.	.	124	11	137	0	.	650
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu	37	8	101237506	101237506	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_003114	exon14	c.1794delA	p.A598fs	.	.	167	11	160	0	.	92
SPAG1	6674	hgsc.bcm.edu;broad.mit.edu	37	8	101252868	101252868	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG1	NM_003114	exon18	c.2518delT	p.F840fs	.	.	236	18	216	0	.	92
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu	37	2	214204964	214204964	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG16	NM_024532	exon6	c.614delA	p.E205fs	.	.	304	20	396	0	.	188
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu	37	1	118583387	118583387	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG17	NM_206996	exon22	c.3132delG	p.G1044fs	.	.	201	13	285	0	.	158
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu	37	17	49071274	49071274	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAG9	NM_001130528	exon19	c.2249delA	p.N750fs	.	.	196	15	318	0	.	659
SPAST	6683	hgsc.bcm.edu;broad.mit.edu	37	2	32340780	32340780	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPAST	NM_014946	exon6	c.880delA	p.K294fs	.	.	151	10	172	0	.	153
SPATA12	353324	bcgsc.ca	37	3	57107744	57107744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPATA12	NM_181727	exon2	c.T22C	p.C8R	.	.	60	4	108	0	.	90
SPATA31D4	389761	hgsc.bcm.edu	37	9	84545071	84545071	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001145197	exon3	c.289delA	p.K97fs	.	.	274	17	262	0	.	.
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu	37	1	48771508	48771508	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPATA6	NM_019073	exon12	c.1237delA	p.R413fs	.	.	155	10	188	0	.	91
SPECC1	92521	hgsc.bcm.edu	37	17	20108053	20108053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPECC1	NM_001033553	exon4	c.G691A	p.E231K	.	.	151	16	217	0	.	639
SPECC1	92521	hgsc.bcm.edu	37	17	20108058	20108058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPECC1	NM_001033553	exon4	c.G696C	p.K232N	.	.	157	7	232	0	.	639
SPEF2	79925	bcgsc.ca	37	5	35709186	35709186	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPEF2	NM_024867	exon19	c.T2802C	p.A934A	.	.	238	7	356	2	.	26
SPEN	23013	broad.mit.edu;bcgsc.ca	37	1	16247470	16247470	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPEN	NM_015001	exon9	c.1741delA	p.K581fs	.	.	64	7	113	0	.	298
SPHK1	8877	bcgsc.ca	37	17	74383417	74383417	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK1	NM_182965	exon6	c.T1163C	p.L388P	.	.	169	7	169	0	.	1107
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu	37	17	74381231	74381231	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK1	NM_182965	exon1	c.45delC	p.L15fs	.	.	223	14	215	0	.	1107
SPHK2	56848	hgsc.bcm.edu;broad.mit.edu	37	19	49132347	49132347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPHK2	NM_020126	exon7	c.1282delC	p.P428fs	.	.	179	11	237	0	.	658
SPIN2B	474343	hgsc.bcm.edu	37	X	57146927	57146927	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPIN2B	NM_001006683	exon2	c.136delC	p.R46fs	.	.	163	10	277	0	.	90
SPRED3	399473	bcgsc.ca	37	19	38882912	38882912	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPRED3	NM_001042522	exon3	c.407delC	p.T136fs	.	.	61	6	90	0	.	651
SPRR3	6707	mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	167	98	131	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	169	47	168	2	A|0.010;C|0.001;T|0.988	45
SPTA1	6708	bcgsc.ca	37	1	158655038	158655038	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTA1	NM_003126	exon2	c.G124T	p.V42F	.	.	294	8	235	0	.	142
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu	37	19	41009859	41009859	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SPTBN4	NM_020971	exon12	c.1485delG	p.L495fs	.	.	152	10	217	0	.	94
SRBD1	55133	broad.mit.edu;bcgsc.ca	37	2	45832517	45832517	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRBD1	NM_018079	exon2	c.64delT	p.S22fs	.	.	57	7	109	0	.	90
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu	37	16	30745026	30745026	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRCAP	NM_006662	exon29	c.6401delT	p.V2134fs	.	.	173	13	160	0	.	94
SRP54	6729	hgsc.bcm.edu;broad.mit.edu	37	14	35497334	35497334	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRP54	NM_003136	exon15	c.1368delA	p.A456fs	.	.	158	11	161	0	.	227
SRPX	8406	bcgsc.ca	37	X	38013784	38013784	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRPX	NM_006307	exon9	c.1142delG	p.G381fs	.	.	69	6	86	0	.	130
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu	37	1	24996012	24996012	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRRM1	NM_005839	exon14	c.2138delC	p.S713fs	.	.	129	10	202	0	.	93
SRRM3	222183	bcgsc.ca	37	7	75914939	75914939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	280	14	478	2	.	.
SRSF12	135295	hgsc.bcm.edu;broad.mit.edu	37	6	89827583	89827583	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SRSF12	NM_080743	exon1	c.24delC	p.P8fs	.	.	141	11	254	0	.	90
SSBP4	170463	bcgsc.ca	37	19	18543529	18543529	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSBP4	NM_032627	exon12	c.770delC	p.S257fs	.	.	53	6	88	0	.	90
SSC5D	284297	bcgsc.ca	37	19	56000731	56000731	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001195267	exon3	c.63delC	p.R21fs	.	.	29	3	95	0	.	.
SSPO	23145	hgsc.bcm.edu	37	7	149476666	149476666	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon9	c.1116+2G>C	.	.	.	296	1	372	0	.	.
SSPO	23145	hgsc.bcm.edu;bcgsc.ca	37	7	149506213	149506213	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon63	c.9204+1T>C	.	.	.	412	33	539	0	.	.
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149489003	149489003	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon35	c.5344delG	p.G1782fs	.	.	134	10	119	0	.	.
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	7	149489415	149489415	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_198455	exon37	c.5568delG	p.L1856fs	.	.	173	11	130	0	.	.
SSR2	6746	hgsc.bcm.edu;broad.mit.edu	37	1	155979390	155979390	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSR2	NM_003145	exon6	c.493delC	p.L165fs	.	.	292	18	249	0	.	90
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu	37	1	85127951	85127951	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SSX2IP	NM_001166417	exon9	c.857delA	p.K286fs	.	.	150	10	178	0	.	92
ST6GALNAC2	10610	bcgsc.ca	37	17	74581809	74581809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ST6GALNAC2	NM_006456	exon1	c.T82C	p.F28L	.	.	51	3	76	0	.	90
STAB1	23166	hgsc.bcm.edu	37	3	52543930	52543930	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAB1	NM_015136	exon23	c.2392delG	p.G798fs	.	.	221	16	280	0	.	139
STAT1	6772	bcgsc.ca	37	2	191862950	191862950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STAT1	NM_007315	exon8	c.A626G	p.K209R	.	.	69	4	128	0	.	1335
STH	246744	hgsc.bcm.edu;broad.mit.edu	37	17	44076686	44076686	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001007532	exon1	c.41delC	p.A14fs	.	.	208	13	291	0	.	.
STIM2	57620	bcgsc.ca	37	4	26997053	26997053	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STIM2	NM_001169118	exon4	c.A450G	p.E150E	.	.	96	3	145	0	.	91
STK24	8428	hgsc.bcm.edu;broad.mit.edu	37	13	99114125	99114125	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STK24	NM_003576	exon8	c.992delG	p.G331fs	.	.	182	11	296	0	.	979
STOX1	219736	hgsc.bcm.edu;broad.mit.edu	37	10	70646243	70646243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STOX1	NM_152709	exon3	c.2691delC	p.F897fs	.	.	115	10	136	0	.	92
STRAP	11171	hgsc.bcm.edu	37	12	16047053	16047053	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STRAP	NM_007178	exon5	c.476delT	p.L159fs	.	.	172	14	256	0	.	228
STRBP	55342	bcgsc.ca	37	9	125921464	125921464	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STRBP	NM_018387	exon9	c.746delA	p.K249fs	.	.	42	4	91	0	.	154
STXBP5	134957	hgsc.bcm.edu;broad.mit.edu	37	6	147648266	147648266	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	STXBP5	NM_139244	exon18	c.1934delT	p.V645fs	.	.	141	12	201	0	.	90
SULF1	23213	hgsc.bcm.edu;broad.mit.edu	37	8	70488249	70488249	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SULF1	NM_001128205	exon6	c.217delG	p.G73fs	.	.	202	13	167	0	.	518
SUMF1	285362	bcgsc.ca	37	3	4403894	4403894	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUMF1	NM_182760	exon9	c.A1059G	p.T353T	.	.	96	4	131	0	.	91
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu	37	19	39959402	39959402	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUPT5H	NM_003169	exon13	c.1044delG	p.L348fs	.	.	121	10	168	0	.	94
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu	37	11	67934514	67934514	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SUV420H1	NM_017635	exon10	c.1109delA	p.N370fs	.	.	209	15	257	0	.	228
SV2B	9899	hgsc.bcm.edu;broad.mit.edu	37	15	91811750	91811750	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SV2B	NM_014848	exon10	c.1288delT	p.F430fs	.	.	168	11	264	0	.	97
SWT1	54823	hgsc.bcm.edu;broad.mit.edu	37	1	185143640	185143640	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon5	c.361delA	p.K121fs	.	.	245	15	210	0	.	91
SWT1	54823	hgsc.bcm.edu;broad.mit.edu	37	1	185175808	185175808	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SWT1	NM_017673	exon13	c.1885delA	p.K629fs	.	.	185	11	159	0	.	91
SYCP1	6847	hgsc.bcm.edu	37	1	115520224	115520224	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYCP1	NM_003176	exon28	c.2369delA	p.E790fs	.	.	137	12	116	0	.	91
SYCP2L	221711	bcgsc.ca	37	6	10942722	10942722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYCP2L	NM_001040274	exon22	c.T1844C	p.L615P	.	.	74	4	95	0	.	24
SYDE2	84144	bcgsc.ca	37	1	85648623	85648623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYDE2	NM_032184	exon3	c.G1702A	p.E568K	.	.	122	5	183	0	.	70
SYNC	81493	hgsc.bcm.edu;broad.mit.edu	37	1	33147421	33147421	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNC	NM_001161708	exon4	c.1399delA	p.T467fs	.	.	241	15	296	0	.	91
SYNE2	23224	ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64465664	64465664	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNE2	NM_182914	exon27	c.A3386G	p.H1129R	.	.	153	56	202	2	.	164
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu	37	6	33388070	33388070	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SYNGAP1	NM_006772	exon1	c.29delG	p.R10fs	.	.	193	13	265	0	.	48
SZT2	23334	hgsc.bcm.edu;broad.mit.edu	37	1	43912809	43912809	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	SZT2	NM_015284	exon65	c.9085delC	p.P3029fs	.	.	213	14	280	0	.	144
T	6862	hgsc.bcm.edu;broad.mit.edu	37	6	166580213	166580213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	T	NM_003181	exon3	c.338delG	p.G113fs	.	.	143	10	192	0	.	516
TAC4	255061	hgsc.bcm.edu;broad.mit.edu	37	17	47918915	47918915	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TAC4	NM_170685	exon3	c.249delA	p.K83fs	.	.	204	13	277	0	.	135
TACC2	10579	hgsc.bcm.edu;broad.mit.edu	37	10	123970853	123970853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon9	c.6913delA	p.K2305fs	.	.	246	15	244	0	.	296
TACC2	10579	hgsc.bcm.edu;broad.mit.edu	37	10	123985931	123985931	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TACC2	NM_206862	exon13	c.7659delT	p.T2553fs	.	.	146	10	228	0	.	296
TAF5L	27097	bcgsc.ca	37	1	229738237	229738237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TAF5L	NM_001025247	exon4	c.C677T	p.P226L	.	.	219	9	159	0	.	91
TALDO1	6888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	759019	759019	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TALDO1	NM_006755	exon3	c.G291T	p.K97N	.	.	121	47	160	0	.	90
TBATA	219793	bcgsc.ca	37	10	72537055	72537055	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_152710	exon7	c.544delG	p.A182fs	.	.	61	6	98	0	.	.
TBC1D12	23232	hgsc.bcm.edu	37	10	96269902	96269902	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D12	NM_015188	exon8	c.1655delC	p.S552fs	.	.	151	11	184	0	.	68
TBC1D5	9779	bcgsc.ca	37	3	17208268	17208268	+	Silent	SNP	G	G	C	rs202196783	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBC1D5	NM_001134381	exon23	c.C2151G	p.A717A	.	.	125	5	236	0	G|0.999;A|0.000	91
TBX3	6926	hgsc.bcm.edu;broad.mit.edu	37	12	115118903	115118903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TBX3	NM_005996	exon2	c.438delA	p.K146fs	.	.	189	11	244	0	.	93
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu	37	X	102841623	102841623	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL4	NM_001006935	exon3	c.20delA	p.E7fs	.	.	150	11	208	0	.	130
TCEAL6	158931	bcgsc.ca	37	X	101395780	101395780	+	Missense_Mutation	SNP	T	T	G	rs111588852		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A524C	p.Q175P	.	.	163	0	109	1	.	91
TCEAL6	158931	bcgsc.ca	37	X	101395784	101395784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G520C	p.A174P	.	.	167	25	122	3	.	91
TCEAL6	158931	hgsc.bcm.edu;bcgsc.ca	37	X	101395778	101395778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.G526A	p.G176R	.	.	164	23	108	0	.	91
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu	37	X	101395774	101395774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEAL6	NM_001006938	exon3	c.A530G	p.D177G	.	.	170	12	108	0	.	91
TCEB3B	51224	hgsc.bcm.edu;ucsc.edu	37	18	44560926	44560926	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCEB3B	NM_016427	exon1	c.T710A	p.L237X	.	.	225	100	255	1	.	156
TCF12	6938	bcgsc.ca	37	15	57484418	57484418	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCF12	NM_207036	exon7	c.A453G	p.K151K	.	.	96	5	160	0	.	1085
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu	37	2	85531091	85531091	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCF7L1	NM_031283	exon6	c.732delC	p.I244fs	.	.	162	10	193	0	.	585
TCHH	7062	bcgsc.ca	37	1	152081923	152081923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCHH	NM_007113	exon3	c.A3770G	p.Q1257R	.	.	413	9	335	0	.	72
TCTEX1D1	200132	bcgsc.ca	37	1	67236141	67236141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTEX1D1	NM_152665	exon3	c.T191C	p.M64T	.	.	97	4	111	0	.	90
TCTN1	79600	bcgsc.ca	37	12	111078953	111078953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTN1	NM_001082537	exon9	c.A1103G	p.Q368R	.	.	83	4	140	0	.	90
TCTN2	79867	hgsc.bcm.edu;broad.mit.edu	37	12	124155858	124155858	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TCTN2	NM_024809	exon1	c.71delG	p.W24fs	.	.	123	10	149	0	.	91
TDRD7	23424	hgsc.bcm.edu	37	9	100203999	100203999	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TDRD7	NM_014290	exon6	c.697delA	p.K233fs	.	.	191	12	238	0	.	93
TEAD4	7004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	3126664	3126664	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TEAD4	NM_003213	exon6	c.G455A	p.R152Q	.	.	197	77	304	0	.	90
TEFM	79736	hgsc.bcm.edu;broad.mit.edu	37	17	29231265	29231265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_024683	exon2	c.314delA	p.N105fs	.	.	166	10	246	0	.	.
TEK	7010	bcgsc.ca	37	9	27169606	27169606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TEK,NS,carcinoma,-1	TEK	NM_000459	exon4	c.T607C	p.F203L	.	.	82	4	101	0	.	1584
TENM1	10178	bcgsc.ca	37	X	123870825	123870825	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001163278	exon4	c.758delA	p.N253fs	.	.	39	4	69	0	.	.
TESPA1	9840	hgsc.bcm.edu;broad.mit.edu	37	12	55356761	55356761	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001098815	exon9	c.921delC	p.P307fs	.	.	153	12	170	0	.	.
TFDP1	7027	hgsc.bcm.edu;broad.mit.edu	37	13	114240158	114240158	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFDP1	NM_007111	exon2	c.6delA	p.A2fs	.	.	123	12	167	0	.	416
TFEB	7942	hgsc.bcm.edu;broad.mit.edu	37	6	41655721	41655721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFEB	NM_001167827	exon5	c.637delC	p.Q213fs	.	.	209	14	255	0	.	659
TFPI	7035	hgsc.bcm.edu;broad.mit.edu	37	2	188349646	188349646	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TFPI	NM_001032281	exon5	c.427delT	p.Y143fs	.	.	169	10	247	0	.	91
THAP9	79725	hgsc.bcm.edu;broad.mit.edu	37	4	83827648	83827648	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THAP9	NM_024672	exon3	c.448delA	p.K150fs	.	.	241	18	341	0	.	156
THG1L	54974	hgsc.bcm.edu;broad.mit.edu	37	5	157160024	157160024	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THG1L	NM_017872	exon2	c.340delA	p.K114fs	.	.	176	11	249	0	.	90
THOC2	57187	bcgsc.ca	37	X	122747978	122747978	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THOC2	NM_001081550	exon34	c.4374delA	p.K1458fs	.	.	45	6	83	0	.	133
THOC2	57187	hgsc.bcm.edu;broad.mit.edu	37	X	122802060	122802060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THOC2	NM_001081550	exon10	c.967delA	p.M323fs	.	.	165	10	221	0	.	133
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu	37	7	11468622	11468622	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7A	NM_015204	exon14	c.3195delA	p.K1065fs	.	.	352	21	283	0	.	71
THSD7B	80731	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	138413197	138413197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THSD7B	.	.	.	.	.	.	192	76	285	0	.	75
THUMPD1	55623	hgsc.bcm.edu;broad.mit.edu	37	16	20749224	20749224	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	THUMPD1	NM_017736	exon3	c.461delA	p.K154fs	.	.	195	14	244	0	.	90
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu	37	19	8002975	8002975	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TIMM44	NM_006351	exon3	c.249delA	p.K83fs	.	.	193	13	209	0	.	91
TLK1	9874	hgsc.bcm.edu	37	2	171923383	171923383	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLK1	NM_001136555	exon1	c.11delT	p.L4fs	.	.	168	11	229	0	.	439
TLL2	7093	bcgsc.ca	37	10	98157042	98157042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLL2	NM_012465	exon11	c.A1285G	p.K429E	.	.	66	4	132	0	.	93
TLR10	81793	hgsc.bcm.edu;broad.mit.edu	37	4	38776490	38776490	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR10	NM_001017388	exon2	c.722delA	p.N241fs	.	.	121	10	130	0	.	522
TLR1	7096	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799868	38799868	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR1	NM_003263	exon4	c.G585C	p.V195V	.	.	146	62	190	0	.	524
TLR3	7098	hgsc.bcm.edu;broad.mit.edu	37	4	186998188	186998188	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLR3	NM_003265	exon2	c.415delA	p.K139fs	.	.	120	10	151	0	.	524
TLX3	30012	bcgsc.ca	37	5	170736428	170736428	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TLX3	NM_021025	exon1	c.59delT	p.I20fs	.	.	23	3	72	0	.	658
TMEM102	284114	hgsc.bcm.edu;broad.mit.edu	37	17	7340045	7340045	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM102	NM_178518	exon3	c.747delA	p.P249fs	.	.	163	10	212	0	.	90
TMEM126B	55863	hgsc.bcm.edu;broad.mit.edu	37	11	85346800	85346800	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM126B	NM_018480	exon4	c.487delA	p.K163fs	.	.	162	10	182	0	.	90
TMEM130	222865	hgsc.bcm.edu;broad.mit.edu	37	7	98460876	98460876	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM130	NM_152913	exon2	c.233delC	p.P78fs	.	.	176	12	182	0	.	91
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu	37	12	129178468	129178468	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM132C	NM_001136103	exon6	c.1544delC	p.A515fs	.	.	219	14	258	0	.	68
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu	37	4	159165494	159165494	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM144	NM_018342	exon12	c.947delA	p.E316fs	.	.	171	12	235	0	.	90
TMEM161A	54929	bcgsc.ca	37	19	19230870	19230870	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM161A	NM_017814	exon12	c.G1309C	p.A437P	.	.	185	6	231	0	.	154
TMEM168	64418	hgsc.bcm.edu;broad.mit.edu	37	7	112424114	112424114	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM168	NM_022484	exon2	c.767delT	p.L256fs	.	.	154	11	115	0	.	91
TMEM200B	399474	hgsc.bcm.edu;broad.mit.edu	37	1	29447542	29447542	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.799delG	p.E267fs	.	.	197	12	242	0	.	68
TMEM200B	399474	hgsc.bcm.edu;broad.mit.edu	37	1	29447550	29447550	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM200B	NM_001171868	exon2	c.791delG	p.G264fs	.	.	194	12	237	0	.	68
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu	37	9	74347297	74347297	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.1533delT	p.F511fs	.	.	139	11	186	0	.	92
TMEM2	23670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74347404	74347404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM2	NM_013390	exon7	c.A1426G	p.I476V	.	.	113	41	174	0	.	92
TMEM229B	161145	hgsc.bcm.edu;broad.mit.edu	37	14	67940172	67940172	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM229B	NM_182526	exon3	c.469delC	p.L157X	.	.	153	10	212	0	.	90
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu	37	5	109973983	109973983	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001039763	exon5	c.417delT	p.F139fs	.	.	307	19	372	0	.	.
TMEM237	65062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202501540	202501540	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001044385	exon4	c.A205T	p.T69S	.	.	44	18	53	0	.	.
TMEM257	9142	bcgsc.ca	37	X	144909302	144909302	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_004709	exon1	c.C107G	p.S36C	.	.	265	13	286	0	.	.
TMEM39B	55116	hgsc.bcm.edu;broad.mit.edu	37	1	32542775	32542775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM39B	NM_018056	exon5	c.446delG	p.R149fs	.	.	152	11	226	0	.	90
TMEM43	79188	bcgsc.ca	37	3	14174380	14174380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM43	NM_024334	exon6	c.T457C	p.S153P	.	.	138	5	228	0	.	91
TMEM50A	23585	hgsc.bcm.edu;broad.mit.edu	37	1	25683316	25683316	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM50A	NM_014313	exon6	c.400delT	p.F134fs	.	.	170	11	185	0	.	90
TMEM57	55219	bcgsc.ca	37	1	25775375	25775375	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM57	NM_018202	exon3	c.299delT	p.L100fs	.	.	125	12	174	2	.	22
TMEM62	80021	hgsc.bcm.edu;broad.mit.edu	37	15	43461843	43461843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM62	NM_024956	exon11	c.1349delT	p.I450fs	.	.	163	12	188	0	.	136
TMEM8A	58986	broad.mit.edu;bcgsc.ca	37	16	427110	427110	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMEM8A	NM_021259	exon4	c.562delG	p.V188fs	.	.	65	7	100	0	.	92
TMPRSS13	84000	bcgsc.ca	37	11	117789342	117789342	+	Missense_Mutation	SNP	T	T	C	rs75037497		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.A233G	p.Q78R	.	.	160	68	181	0	T|0.500;C|0.500	91
TMPRSS13	84000	bcgsc.ca	37	11	117789345	117789345	+	Missense_Mutation	SNP	G	G	C	rs61900347		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.C230G	p.A77G	.	.	154	58	188	0	G|0.899;C|0.101	91
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789312	117789312	+	Missense_Mutation	SNP	C	C	A	rs200637340	alternate_allele	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.G263T	p.R88L	.	.	158	14	222	0	C|0.999;T|0.000	91
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789314	117789314	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS13	NM_001206790	exon2	c.C261T	p.A87A	.	.	153	18	215	0	.	91
TMPRSS6	164656	hgsc.bcm.edu;broad.mit.edu	37	22	37480793	37480793	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TMPRSS6	NM_153609	exon9	c.1087delC	p.Q363fs	.	.	148	10	145	0	.	292
TNFAIP3	7128	bcgsc.ca	37	6	138200242	138200242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFAIP3	NM_001270507	exon7	c.A1660G	p.S554G	.	.	81	4	112	0	.	1498
TNFAIP6	7130	broad.mit.edu;bcgsc.ca	37	2	152214251	152214251	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFAIP6	NM_007115	exon1	c.71delT	p.I24fs	.	.	66	8	93	0	.	90
TNFSF11	8600	hgsc.bcm.edu;broad.mit.edu	37	13	43180938	43180938	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNFSF11	NM_003701	exon5	c.838delT	p.F280fs	.	.	196	13	304	0	.	522
TNIK	23043	bcgsc.ca	37	3	170802932	170802932	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNIK	NM_015028	exon25	c.A2973G	p.E991E	.	.	156	5	179	2	.	550
TNIK	23043	hgsc.bcm.edu;broad.mit.edu	37	3	170801981	170801981	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNIK	NM_015028	exon26	c.3132delA	p.K1044fs	.	.	203	13	230	0	.	550
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu	37	16	24802560	24802560	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6A	NM_014494	exon6	c.2597delG	p.W866fs	.	.	229	15	310	0	.	92
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6A	NM_014494	exon9	c.3541delA	p.K1181fs	.	.	224	14	267	0	.	92
TNRC6B	23112	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	40657900	40657900	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNRC6B	NM_001024843	exon7	c.A288G	p.P96P	.	.	181	69	248	0	.	22
TNS1	7145	hgsc.bcm.edu;broad.mit.edu	37	2	218674974	218674974	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNS1	NM_022648	exon29	c.4789delG	p.A1597fs	.	.	158	13	224	0	.	156
TNXB	7148	hgsc.bcm.edu;broad.mit.edu	37	6	32036432	32036432	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon17	c.5955delC	p.P1985fs	.	.	191	12	218	0	.	90
TNXB	7148	hgsc.bcm.edu;broad.mit.edu	37	6	32038147	32038147	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TNXB	NM_019105	exon14	c.5035delG	p.E1679fs	.	.	182	11	189	0	.	90
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu	37	17	38552661	38552661	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOP2A	NM_001067	exon28	c.3594delG	p.G1198fs	.	.	122	10	209	0	.	655
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu	37	3	133320122	133320122	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOPBP1	NM_007027	exon28	c.4541delA	p.N1514fs	.	.	191	16	251	0	.	540
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu	37	3	133347265	133347265	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOPBP1	NM_007027	exon16	c.2745delA	p.K915fs	.	.	203	14	248	0	.	540
TOX2	84969	hgsc.bcm.edu;broad.mit.edu	37	20	42694668	42694668	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TOX2	NM_001098797	exon7	c.1277delC	p.A426fs	.	.	214	16	277	0	.	91
TP53	7157	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7578503	7578503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	TP53,NS,carcinoma,+1	TP53	NM_000546	exon5	c.G427A	p.V143M	.	.	125	51	167	0	.	70225
TP53I13	90313	hgsc.bcm.edu;broad.mit.edu	37	17	27899664	27899664	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TP53I13	NM_138349	exon6	c.1018delG	p.G340fs	.	.	155	11	205	0	.	90
TPCN2	219931	hgsc.bcm.edu;broad.mit.edu	37	11	68839465	68839465	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPCN2	NM_139075	exon11	c.1035delG	p.V345fs	.	.	104	10	125	0	.	90
TPTE2	93492	broad.mit.edu;bcgsc.ca	37	13	20024290	20024290	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPTE2	NM_199254	exon14	c.899delT	p.F300fs	.	.	386	10	496	0	.	92
TPTE2	93492	hgsc.bcm.edu;broad.mit.edu	37	13	20039443	20039443	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TPTE2	NM_199254	exon10	c.628delA	p.R210fs	.	.	193	12	256	0	.	92
TRAF3IP1	26146	hgsc.bcm.edu;broad.mit.edu	37	2	239241509	239241509	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAF3IP1	NM_015650	exon6	c.960delT	p.T320fs	.	.	212	14	276	0	.	228
TRAF3IP2	10758	broad.mit.edu;bcgsc.ca	37	6	111880693	111880693	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAF3IP2	NM_147686	exon9	c.1613delA	p.N538fs	.	.	58	7	88	0	.	228
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu	37	2	202245603	202245603	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRAK2	NM_015049	exon16	c.2408delT	p.L803fs	.	.	157	10	246	0	.	90
TREH	11181	bcgsc.ca	37	11	118529044	118529044	+	Splice_Site	SNP	C	C	G	rs72488014		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TREH	.	.	.	.	.	.	295	2	489	0	.	46
TRIM27	5987	hgsc.bcm.edu;broad.mit.edu	37	6	28887983	28887983	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM27	NM_006510	exon3	c.553delG	p.E185fs	.	.	183	11	254	0	.	684
TRIM61	391712	broad.mit.edu;bcgsc.ca	37	4	165891104	165891104	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM61	NM_001012414	exon3	c.51delC	p.P17fs	.	.	285	11	382	0	.	91
TRIM65	201292	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	73887372	73887372	+	Missense_Mutation	SNP	G	G	A	rs144407004		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM65	NM_173547	exon6	c.C1042T	p.R348C	.	.	115	34	131	0	G|1.000;A|0.000	90
TRIM66	9866	hgsc.bcm.edu;broad.mit.edu	37	11	8662474	8662474	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRIM66	NM_014818	exon9	c.1013delC	p.P338fs	.	.	156	10	140	0	.	68
TRMT11	60487	hgsc.bcm.edu;broad.mit.edu	37	6	126332450	126332450	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRMT11	NM_001031712	exon9	c.812delG	p.R271fs	.	.	141	10	166	0	.	91
TRNT1	51095	bcgsc.ca	37	3	3189280	3189280	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRNT1	NM_182916	exon7	c.A949G	p.K317E	.	.	158	5	205	0	.	90
TRPC1	7220	hgsc.bcm.edu;broad.mit.edu	37	3	142443550	142443550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPC1	NM_001251845	exon1	c.149delT	p.L50fs	.	.	122	10	169	0	.	92
TRPM1	4308	broad.mit.edu;bcgsc.ca	37	15	31358308	31358308	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPM1	NM_001252020	exon6	c.812delA	p.K271fs	.	.	161	8	257	0	.	94
TRPV1	7442	bcgsc.ca	37	17	3486703	3486703	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPV1	NM_018727	exon9	c.A1405T	p.T469S	.	.	68	4	135	0	.	23
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu	37	17	3495572	3495572	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TRPV1	NM_018727	exon2	c.73delC	p.L25fs	.	.	133	11	160	0	.	23
TSHZ1	10194	bcgsc.ca	37	18	72997831	72997831	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSHZ1	NM_005786	exon2	c.A334C	p.T112P	.	.	82	24	109	12	.	90
TSKS	60385	hgsc.bcm.edu	37	19	50249950	50249950	+	Missense_Mutation	SNP	C	C	T	rs76911687		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSKS	NM_021733	exon6	c.G769A	p.E257K	.	.	37	6	47	0	.	154
TSNAX-DISC1	0	hgsc.bcm.edu	37	1	232099236	232099236	+	RNA	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	199	14	140	0	.	.
TSPAN12	23554	hgsc.bcm.edu;broad.mit.edu	37	7	120450526	120450526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN12	NM_012338	exon6	c.459delT	p.F153fs	.	.	154	11	165	0	.	514
TSPAN14	81619	hgsc.bcm.edu;broad.mit.edu	37	10	82271995	82271995	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN14	NM_030927	exon6	c.546delC	p.V182fs	.	.	167	10	235	0	.	91
TSPAN19	144448	hgsc.bcm.edu;broad.mit.edu	37	12	85421730	85421730	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPAN19	NM_001100917	exon4	c.211delT	p.C71fs	.	.	171	14	206	0	.	1
TSPYL1	7259	hgsc.bcm.edu;broad.mit.edu	37	6	116600132	116600132	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL1	NM_003309	exon1	c.862delC	p.Q288fs	.	.	166	11	205	0	.	90
TSPYL2	64061	hgsc.bcm.edu;broad.mit.edu	37	X	53113779	53113779	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL2	NM_022117	exon2	c.860delT	p.I287fs	.	.	118	10	201	0	.	130
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu	37	2	54482889	54482889	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TSPYL6	NM_001003937	exon1	c.400delG	p.A134fs	.	.	106	10	118	0	.	90
TTC14	151613	hgsc.bcm.edu;broad.mit.edu	37	3	180326508	180326508	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC14	NM_133462	exon11	c.1310delA	p.E437fs	.	.	185	11	240	0	.	91
TTC21A	199223	bcgsc.ca	37	3	39166567	39166567	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC21A	NM_145755	exon10	c.T1131C	p.C377C	.	.	147	5	183	0	.	91
TTC39B	158219	broad.mit.edu;bcgsc.ca	37	9	15192619	15192619	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTC39B	NM_001168340	exon9	c.899delG	p.G300fs	.	.	79	9	119	0	.	187
TTC40	54777	hgsc.bcm.edu;broad.mit.edu	37	10	134730127	134730127	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001200049	exon17	c.2046delC	p.P682fs	.	.	165	10	169	0	.	.
TTF2	8458	bcgsc.ca	37	1	117618069	117618069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTF2	NM_003594	exon5	c.G863T	p.W288L	.	.	130	5	188	1	.	91
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu	37	6	167755064	167755064	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL2	NM_031949	exon3	c.1676delT	p.V559fs	.	.	191	12	238	0	.	92
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu	37	17	46846369	46846369	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTLL6	NM_001130918	exon15	c.2658delA	p.K886fs	.	.	204	13	250	0	.	90
TTN	7273	bcgsc.ca	37	2	179600364	179600364	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon50	c.T14809C	p.C4937R	.	.	121	5	116	0	.	636
TTN	7273	bcgsc.ca	37	2	179641621	179641621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon28	c.A4970G	p.E1657G	.	.	155	5	197	1	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179485563	179485563	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TTN	NM_001267550	exon247	c.45774delA	p.K15258fs	.	.	156	10	246	0	.	636
TUBA3D	113457	hgsc.bcm.edu;broad.mit.edu	37	2	132238225	132238225	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TUBA3D	NM_080386	exon4	c.959delG	p.R320fs	.	.	245	15	425	0	.	44
TULP3	7289	broad.mit.edu;bcgsc.ca	37	12	3040387	3040387	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP3	NM_003324	exon6	c.677delA	p.E226fs	.	.	61	8	68	0	.	226
TULP4	56995	hgsc.bcm.edu;broad.mit.edu	37	6	158915819	158915819	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP4	NM_020245	exon11	c.1811delG	p.W604fs	.	.	169	11	294	0	.	91
TULP4	56995	hgsc.bcm.edu;broad.mit.edu	37	6	158923160	158923160	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TULP4	NM_020245	exon13	c.2465delC	p.A822fs	.	.	147	11	177	0	.	91
TYW3	127253	hgsc.bcm.edu;broad.mit.edu	37	1	75229675	75229675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	TYW3	NM_138467	exon6	c.658delA	p.K220fs	.	.	245	17	289	0	.	70
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu	37	13	99896772	99896772	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBAC2	NM_001144072	exon4	c.283delT	p.F95fs	.	.	144	10	197	0	.	91
UBE2K	3093	bcgsc.ca	37	4	39776553	39776553	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE2K	NM_005339	exon5	c.399delG	p.Q133fs	.	.	50	5	78	0	.	23
UBE2O	63893	hgsc.bcm.edu;broad.mit.edu	37	17	74388089	74388089	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE2O	NM_022066	exon16	c.3052delC	p.H1018fs	.	.	178	13	126	0	.	272
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu	37	12	109921448	109921448	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE3B	NM_001270451	exon3	c.92delG	p.R31fs	.	.	213	13	194	0	.	660
UBE3C	9690	bcgsc.ca	37	7	157000178	157000178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBE3C	NM_014671	exon12	c.T1505C	p.L502P	.	.	265	8	240	0	.	704
UBR1	197131	hgsc.bcm.edu	37	15	43350584	43350584	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR1	NM_174916	exon10	c.1137delT	p.F379fs	.	.	173	12	201	0	.	91
UBR1	197131	hgsc.bcm.edu;broad.mit.edu	37	15	43363019	43363019	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR1	NM_174916	exon5	c.633delA	p.K211fs	.	.	130	10	122	0	.	91
UBR2	23304	hgsc.bcm.edu;broad.mit.edu	37	6	42620286	42620286	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR2	NM_015255	exon25	c.2672delT	p.I891fs	.	.	184	13	245	0	.	94
UBR4	23352	broad.mit.edu;bcgsc.ca	37	1	19526164	19526164	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR4	NM_020765	exon3	c.359delA	p.E120fs	.	.	50	7	73	0	.	612
UBR4	23352	broad.mit.edu;bcgsc.ca	37	1	19526167	19526170	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TCTG	TCTG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBR4	NM_020765	exon3	c.353_356del	p.118_119del	.	.	49	7	74	0	.	612
UBXN4	23190	hgsc.bcm.edu;broad.mit.edu	37	2	136540331	136540331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBXN4	NM_014607	exon13	c.1401delA	p.R467fs	.	.	128	10	163	0	.	92
UBXN8	7993	bcgsc.ca	37	8	30620838	30620838	+	RNA	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBXN8	.	.	.	.	.	.	92	6	205	1	.	90
UBXN8	7993	bcgsc.ca	37	8	30620840	30620840	+	RNA	SNP	G	G	T	rs77443237		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UBXN8	.	.	.	.	.	.	93	0	203	0	.	90
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu	37	13	96513105	96513105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGGT2	NM_020121	exon32	c.3677delA	p.K1226fs	.	.	178	13	192	0	.	92
UGP2	7360	hgsc.bcm.edu;broad.mit.edu	37	2	64084969	64084969	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGP2	NM_006759	exon3	c.154delA	p.K52fs	.	.	107	10	135	0	.	90
UGT1A3	54659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	234638491	234638492	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A3	NM_019093	exon1	c.719_720del	p.240_240del	.	.	329	0	478	0	.	24
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu	37	2	234622350	234622350	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT1A5	NM_019078	exon1	c.713delT	p.L238fs	.	.	203	13	343	0	.	3
UGT2B28	54490	hgsc.bcm.edu;broad.mit.edu	37	4	70156317	70156317	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT2B28	NM_053039	exon5	c.1098delA	p.P366fs	.	.	188	12	211	0	.	91
UGT2B7	7364	bcgsc.ca	37	4	69964281	69964281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UGT2B7	NM_001074	exon2	c.A745G	p.T249A	.	.	134	7	197	1	.	92
UHRF1BP1L	23074	broad.mit.edu;bcgsc.ca	37	12	100441404	100441404	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UHRF1BP1L	NM_015054	exon19	c.3985delC	p.R1329fs	.	.	46	7	72	0	.	24
ULK2	9706	hgsc.bcm.edu;broad.mit.edu	37	17	19729453	19729453	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ULK2	NM_001142610	exon11	c.834delA	p.K278fs	.	.	210	14	292	0	.	334
ULK2	9706	hgsc.bcm.edu;broad.mit.edu	37	17	19729495	19729495	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ULK2	NM_001142610	exon11	c.792delA	p.A264fs	.	.	282	18	384	0	.	334
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu	37	17	73836368	73836368	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNC13D	NM_199242	exon10	c.796delC	p.R266fs	.	.	159	10	198	0	.	92
UNC5B	219699	bcgsc.ca	37	10	73051389	73051389	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNC5B	NM_170744	exon10	c.G1495C	p.G499R	.	.	75	5	103	0	.	228
UNG	7374	hgsc.bcm.edu;broad.mit.edu	37	12	109541376	109541376	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UNG	NM_080911	exon6	c.761delG	p.W254fs	.	.	151	11	229	0	.	1083
UPF1	5976	hgsc.bcm.edu;broad.mit.edu	37	19	18971165	18971165	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF1	NM_002911	exon16	c.2218delC	p.P740fs	.	.	177	11	272	0	.	91
UPF2	26019	hgsc.bcm.edu;broad.mit.edu	37	10	11997384	11997384	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	UPF2	NM_080599	exon14	c.2697delT	p.F899fs	.	.	131	10	207	0	.	515
URGCP	55665	hgsc.bcm.edu;broad.mit.edu	37	7	43917420	43917420	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	URGCP	NM_001077663	exon6	c.1642delG	p.V548fs	.	.	199	12	183	0	.	94
URI1	8725	bcgsc.ca	37	19	30498405	30498405	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_003796	exon7	c.T546C	p.H182H	.	.	90	4	114	1	.	.
USH2A	7399	hgsc.bcm.edu;broad.mit.edu	37	1	215821896	215821896	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USH2A	NM_206933	exon66	c.14556delC	p.P4852fs	.	.	215	13	120	0	.	115
USH2A	7399	hgsc.bcm.edu;broad.mit.edu	37	1	216019331	216019331	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USH2A	NM_206933	exon45	c.8890delT	p.W2964fs	.	.	221	14	191	0	.	115
USO1	8615	broad.mit.edu;bcgsc.ca	37	4	76703857	76703857	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USO1	.	.	.	.	.	.	64	7	75	0	.	25
USP13	8975	hgsc.bcm.edu;broad.mit.edu	37	3	179408081	179408081	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP13	NM_003940	exon3	c.347delT	p.I116fs	.	.	176	11	271	0	.	659
USP15	9958	hgsc.bcm.edu;broad.mit.edu	37	12	62785098	62785098	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP15	NM_001252078	exon16	c.2122delA	p.K708fs	.	.	165	11	215	0	.	1084
USP16	10600	hgsc.bcm.edu;broad.mit.edu	37	21	30415885	30415885	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP16	NM_006447	exon13	c.1321delA	p.K441fs	.	.	141	10	188	0	.	659
USP17L20	100287441	broad.mit.edu;bcgsc.ca	37	4	9270323	9270323	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001256861	exon1	c.979delG	p.G327fs	.	.	727	20	986	0	.	.
USP24	23358	hgsc.bcm.edu;broad.mit.edu	37	1	55608747	55608747	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP24	NM_015306	exon22	c.2485delA	p.I829X	.	.	196	12	286	0	.	521
USP31	57478	hgsc.bcm.edu;broad.mit.edu	37	16	23093870	23093870	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP31	NM_020718	exon12	c.1839delC	p.P613fs	.	.	152	10	258	0	.	663
USP34	9736	broad.mit.edu;bcgsc.ca	37	2	61417777	61417777	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP34	NM_014709	exon77	c.9605delA	p.N3202fs	.	.	70	7	83	0	.	579
USP37	57695	hgsc.bcm.edu;broad.mit.edu	37	2	219353075	219353075	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP37	NM_020935	exon15	c.1542delA	p.K514fs	.	.	164	10	232	0	.	661
USP40	55230	hgsc.bcm.edu;broad.mit.edu	37	2	234386085	234386085	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP40	NM_018218	exon31	c.3697delC	p.R1233fs	.	.	130	10	127	0	.	455
USP43	124739	bcgsc.ca	37	17	9604952	9604952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP43	NM_001267576	exon12	c.A1946G	p.D649G	.	.	89	5	100	0	.	637
USP47	55031	hgsc.bcm.edu;broad.mit.edu	37	11	11970052	11970052	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP47	NM_017944	exon21	c.3091delA	p.K1031fs	.	.	159	10	164	0	.	660
USP48	84196	hgsc.bcm.edu;broad.mit.edu	37	1	22056297	22056297	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP48	NM_001032730	exon10	c.1200delA	p.K400fs	.	.	153	10	220	0	.	659
USP53	54532	hgsc.bcm.edu;broad.mit.edu	37	4	120192499	120192499	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP53	NM_019050	exon15	c.1484delC	p.A495fs	.	.	142	11	166	0	.	660
USP9X	8239	hgsc.bcm.edu;broad.mit.edu	37	X	41043827	41043827	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	USP9X	NM_001039591	exon23	c.3457delA	p.K1153fs	.	.	143	10	161	0	.	563
VARS2	57176	bcgsc.ca	37	6	30888162	30888162	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VARS2	NM_001167734	exon14	c.G1436C	p.W479S	.	.	77	8	139	0	.	26
VARS2	57176	broad.mit.edu;bcgsc.ca	37	6	30888161	30888161	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VARS2	NM_001167734	exon14	c.1435delT	p.W479fs	.	.	77	8	140	0	.	26
VARS2	57176	hgsc.bcm.edu;broad.mit.edu	37	6	30890972	30890972	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VARS2	NM_001167734	exon24	c.2367delT	p.A789fs	.	.	160	12	262	0	.	26
VIM	7431	bcgsc.ca	37	10	17278320	17278320	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VIM	NM_003380	exon9	c.T1301C	p.V434A	.	.	85	4	103	0	.	291
VMA21	203547	bcgsc.ca	37	X	150565332	150565332	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VMA21	.	.	.	.	.	.	50	6	79	0	.	108
VPS11	55823	bcgsc.ca	37	11	118939942	118939942	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS11	.	.	.	.	.	.	82	8	149	0	.	25
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu	37	1	12336449	12336449	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon19	c.2804delC	p.T935fs	.	.	125	11	175	0	.	95
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu	37	1	12414184	12414184	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS13D	NM_015378	exon47	c.9585delT	p.D3195fs	.	.	199	14	272	0	.	95
VPS35	55737	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	46696258	46696258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS35	NM_018206	exon15	c.T1964G	p.L655R	.	.	143	52	211	0	.	90
VPS36	51028	bcgsc.ca	37	13	52991226	52991226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS36	NM_016075	exon12	c.A956G	p.K319R	.	.	61	4	95	0	.	91
VPS37C	55048	hgsc.bcm.edu;broad.mit.edu	37	11	60899827	60899827	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS37C	NM_017966	exon5	c.533delC	p.P178fs	.	.	201	12	212	0	.	90
VPS39	23339	hgsc.bcm.edu;broad.mit.edu	37	15	42480005	42480005	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	VPS39	NM_015289	exon6	c.392delA	p.K131fs	.	.	165	11	240	0	.	229
VSIG10	54621	hgsc.bcm.edu	37	12	118506333	118506333	+	Silent	SNP	C	C	T	rs199991783		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_019086	exon8	c.G1416A	p.E472E	.	.	246	18	308	0	.	.
VSIG10L	147645	bcgsc.ca	37	19	51835896	51835896	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001163922	exon11	c.2575-2A>G	.	.	.	97	8	132	0	.	.
VSIG10L	147645	hgsc.bcm.edu;bcgsc.ca	37	19	51835894	51835894	+	Missense_Mutation	SNP	C	C	G	rs200336358		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001163922	exon10	c.G2575C	p.A859P	.	.	94	11	132	0	.	.
VWA7	80737	bcgsc.ca	37	6	31734992	31734992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_025258	exon13	c.A1825G	p.I609V	.	.	88	5	77	0	.	.
WBP11	51729	hgsc.bcm.edu;broad.mit.edu	37	12	14941929	14941929	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon11	c.1448delC	p.P483fs	.	.	153	10	184	0	.	92
WBP11	51729	hgsc.bcm.edu;broad.mit.edu	37	12	14943574	14943574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WBP11	NM_016312	exon10	c.1125delA	p.K375fs	.	.	164	10	250	0	.	92
WDR18	57418	broad.mit.edu;bcgsc.ca	37	19	990319	990319	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR18	NM_024100	exon4	c.552delC	p.G184fs	.	.	70	7	98	0	.	91
WDR19	57728	hgsc.bcm.edu;broad.mit.edu	37	4	39280220	39280220	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR19	NM_025132	exon36	c.3979delA	p.K1327fs	.	.	184	11	239	0	.	67
WDR37	22884	hgsc.bcm.edu;broad.mit.edu	37	10	1170240	1170240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR37	NM_014023	exon12	c.1186delA	p.K396fs	.	.	117	11	143	0	.	90
WDR59	79726	bcgsc.ca	37	16	74908118	74908118	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR59	NM_030581	exon26	c.2914delA	p.S972fs	.	.	57	6	78	0	.	92
WDR73	84942	hgsc.bcm.edu	37	15	85186894	85186894	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR73	NM_032856	exon8	c.944delA	p.D315fs	.	.	158	14	176	0	.	90
WDR78	79819	hgsc.bcm.edu;broad.mit.edu	37	1	67292680	67292680	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR78	NM_024763	exon15	c.2162delT	p.L721X	.	.	365	24	467	0	.	92
WDR81	124997	hgsc.bcm.edu	37	17	1631343	1631343	+	Missense_Mutation	SNP	G	G	T	rs200758098		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR81	NM_001163809	exon1	c.G3090T	p.E1030D	.	.	67	4	89	0	.	91
WDR93	56964	hgsc.bcm.edu;broad.mit.edu	37	15	90278766	90278766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WDR93	NM_020212	exon14	c.1590delC	p.V530fs	.	.	137	10	157	0	.	24
WEE2	494551	bcgsc.ca	37	7	141430101	141430101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WEE2	NM_001105558	exon12	c.A1685G	p.E562G	.	.	235	6	224	1	.	305
WNK1	65125	hgsc.bcm.edu;broad.mit.edu	37	12	987482	987482	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_213655	exon12	c.3822delG	p.Q1274fs	.	.	221	13	261	0	.	916
WNK1	65125	hgsc.bcm.edu;broad.mit.edu	37	12	989892	989892	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK1	NM_001184985	exon12	c.3618delC	p.F1206fs	.	.	220	14	319	0	.	916
WNK4	65266	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	40932748	40932748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNK4	NM_032387	exon1	c.T32C	p.V11A	.	.	46	19	93	1	.	336
WNT1	7471	bcgsc.ca	37	12	49375164	49375164	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNT1	NM_005430	exon4	c.854delC	p.S285fs	.	.	68	6	156	0	.	1083
WNT2	7472	hgsc.bcm.edu;broad.mit.edu	37	7	116962981	116962981	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WNT2	NM_003391	exon1	c.63delC	p.P21fs	.	.	107	10	103	0	.	1011
WT1-AS	51352	ucsc.edu;mdanderson.org	37	11	32460561	32460561	+	RNA	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WT1-AS	.	.	.	.	.	.	96	33	133	0	.	68
WWOX	51741	hgsc.bcm.edu;broad.mit.edu	37	16	78143722	78143722	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	WWOX	NM_130791	exon3	c.220delT	p.F74fs	.	.	152	11	203	0	.	90
XCR1	2829	hgsc.bcm.edu;broad.mit.edu	37	3	46062566	46062566	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XCR1	NM_001024644	exon2	c.874delG	p.V292fs	.	.	264	18	434	0	.	523
XDH	7498	hgsc.bcm.edu;broad.mit.edu	37	2	31588960	31588960	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XDH	NM_000379	exon22	c.2338delA	p.M780fs	.	.	137	10	187	0	.	158
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu	37	3	39227535	39227535	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP1	NM_194293	exon2	c.3402delG	p.G1134fs	.	.	165	11	224	0	.	158
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu	37	2	168108333	168108333	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XIRP2	NM_152381	exon9	c.10431delA	p.R3477fs	.	.	176	11	208	0	.	104
XPOT	11260	bcgsc.ca	37	12	64812733	64812733	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XPOT	NM_007235	exon6	c.G348A	p.E116E	.	.	246	14	340	5	.	652
XPOT	11260	bcgsc.ca	37	12	64838888	64838888	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XPOT	NM_007235	exon24	c.2839delA	p.K947fs	.	.	50	5	74	0	.	652
XRCC6	2547	hgsc.bcm.edu;broad.mit.edu	37	22	42033647	42033647	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRCC6	NM_001469	exon6	c.625delG	p.G209fs	.	.	252	15	306	0	.	661
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu	37	11	74559430	74559430	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon15	c.1434delC	p.P478fs	.	.	156	12	212	0	.	68
XRRA1	143570	hgsc.bcm.edu;broad.mit.edu	37	11	74574037	74574037	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	XRRA1	NM_182969	exon11	c.1009delT	p.S337fs	.	.	166	10	236	0	.	68
YAP1	10413	hgsc.bcm.edu;broad.mit.edu	37	11	102094405	102094405	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YAP1	NM_001130145	exon7	c.1085delA	p.Q362fs	.	.	166	11	248	0	.	659
YIPF4	84272	hgsc.bcm.edu;broad.mit.edu	37	2	32503243	32503243	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YIPF4	NM_032312	exon1	c.19delC	p.P7fs	.	.	124	10	184	0	.	90
YTHDC1	91746	broad.mit.edu;bcgsc.ca	37	4	69198513	69198513	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YTHDC1	NM_001031732	exon6	c.1026delA	p.K342fs	.	.	70	7	126	0	.	92
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu	37	4	69195927	69195927	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	YTHDC1	NM_001031732	exon8	c.1224delA	p.K408fs	.	.	185	12	149	0	.	92
ZAN	7455	bcgsc.ca	37	7	100371477	100371477	+	Splice_Site	SNP	T	T	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZAN	.	.	.	.	.	.	324	19	332	0	.	142
ZBBX	79740	bcgsc.ca	37	3	167006752	167006752	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBBX	NM_001199201	exon19	c.A1899G	p.P633P	.	.	139	8	200	0	.	92
ZBTB3	79842	bcgsc.ca	37	11	62520216	62520216	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBTB3	NM_024784	exon2	c.A1071G	p.E357E	.	.	138	5	167	1	.	585
ZBTB3	79842	hgsc.bcm.edu;broad.mit.edu	37	11	62520953	62520953	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZBTB3	NM_024784	exon2	c.334delG	p.D112fs	.	.	184	11	240	0	.	585
ZC3H10	84872	broad.mit.edu;bcgsc.ca	37	12	56515344	56515344	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZC3H10	NM_032786	exon3	c.998delC	p.A333fs	.	.	70	7	88	0	.	90
ZC3H3	23144	bcgsc.ca	37	8	144523233	144523233	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZC3H3	NM_015117	exon10	c.2365delC	p.R789fs	.	.	54	6	71	0	.	91
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu	37	1	52891114	52891114	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC11	NM_001009881	exon29	c.4777delC	p.L1593fs	.	.	146	11	224	0	.	93
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu	37	1	52991403	52991403	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC11	NM_015269	exon2	c.550delA	p.I184fs	.	.	284	21	329	0	.	93
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu	37	16	87445899	87445899	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC14	NM_015144	exon12	c.2017delC	p.R673fs	.	.	230	15	246	0	.	154
ZCCHC6	79670	hgsc.bcm.edu	37	9	88937856	88937856	+	Missense_Mutation	SNP	T	T	C	rs75851694	byfrequency	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC6	NM_024617	exon13	c.A2809G	p.K937E	.	.	232	12	302	0	T|0.980;C|0.020	92
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu	37	9	88960648	88960648	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZCCHC6	NM_024617	exon4	c.755delT	p.L252X	.	.	171	11	257	0	.	92
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu	37	2	207175038	207175038	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZDBF2	NM_020923	exon5	c.5786delA	p.Q1929fs	.	.	178	11	261	0	.	3
ZFP57	346171	hgsc.bcm.edu;broad.mit.edu	37	6	29640726	29640726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFP57	NM_001109809	exon4	c.1162delC	p.H388fs	.	.	160	11	235	0	.	5
ZFY	7544	hgsc.bcm.edu;broad.mit.edu	37	Y	2847675	2847675	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_003411	exon8	c.2047delA	p.K683fs	.	.	189	13	265	0	.	.
ZFYVE16	9765	hgsc.bcm.edu;broad.mit.edu	37	5	79769620	79769620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE16	NM_001105251	exon17	c.4235delA	p.E1412fs	.	.	170	12	210	0	.	90
ZFYVE20	64145	hgsc.bcm.edu;broad.mit.edu	37	3	15132024	15132024	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE20	NM_022340	exon5	c.171delA	p.K57fs	.	.	186	13	222	0	.	92
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu	37	1	52705235	52705235	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZFYVE9	NM_007323	exon4	c.2146delA	p.K716fs	.	.	156	11	227	0	.	230
ZHX1	11244	hgsc.bcm.edu;broad.mit.edu	37	8	124266657	124266657	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZHX1	NM_007222	exon3	c.1530delA	p.K510fs	.	.	211	14	192	0	.	91
ZMAT5	55954	bcgsc.ca	37	22	30134332	30134332	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZMAT5	NM_001003692	exon5	c.370delG	p.A124fs	.	.	61	6	82	0	.	23
ZMIZ1	57178	bcgsc.ca	37	10	81050917	81050917	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZMIZ1	NM_020338	exon10	c.742delG	p.G248fs	.	.	59	6	90	0	.	292
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu	37	7	44806215	44806215	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZMIZ2	NM_031449	exon18	c.2608delC	p.P870fs	.	.	172	12	110	0	.	137
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu	37	2	219509322	219509322	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF142	NM_001105537	exon8	c.1917delG	p.G639fs	.	.	160	11	180	0	.	137
ZNF14	7561	bcgsc.ca	37	19	19825296	19825296	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF14	NM_021030	exon2	c.4delG	p.D2fs	.	.	40	4	77	0	.	517
ZNF157	7712	hgsc.bcm.edu;broad.mit.edu	37	X	47271956	47271956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF157	NM_003446	exon4	c.484delT	p.F162fs	.	.	164	10	183	0	.	130
ZNF175	7728	broad.mit.edu	37	19	52090264	52090264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF175	NM_007147	exon5	c.T680C	p.V227A	.	.	103	4	135	0	.	90
ZNF185	7739	broad.mit.edu;bcgsc.ca	37	X	152132452	152132452	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF185	NM_001178106	exon19	c.1770delT	p.Y590X	.	.	72	7	105	0	.	133
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu	37	16	3274133	3274133	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon5	c.947delA	p.N316fs	.	.	178	11	222	0	.	90
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu	37	16	3283724	3283724	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF200	NM_003454	exon2	c.32delC	p.P11fs	.	.	157	12	237	0	.	90
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155940	22155940	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF208	NM_007153	exon4	c.T1896C	p.A632A	.	.	83	28	69	0	.	7
ZNF217	7764	bcgsc.ca	37	20	52192314	52192314	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF217	NM_006526	exon3	c.2989delT	p.Y997fs	.	.	54	5	63	0	.	723
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu	37	20	52193620	52193620	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF217	NM_006526	exon3	c.1683delT	p.F561fs	.	.	140	12	180	0	.	723
ZNF234	10780	hgsc.bcm.edu;broad.mit.edu	37	19	44660629	44660629	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_006630	exon6	c.460delA	p.K154fs	.	.	173	11	301	0	.	.
ZNF2	7549	hgsc.bcm.edu	37	2	95847047	95847047	+	Silent	SNP	G	G	A	rs112887855		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF2	NM_021088	exon5	c.G474A	p.R158R	.	.	86	7	111	0	G|0.500;A|0.500	90
ZNF280B	140883	hgsc.bcm.edu;broad.mit.edu	37	22	22842771	22842771	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF280B	NM_080764	exon4	c.953delA	p.N318fs	.	.	171	12	206	0	.	70
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu	37	6	28963809	28963809	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF311	NM_001010877	exon7	c.970delA	p.T324fs	.	.	180	13	243	0	.	22
ZNF324	25799	hgsc.bcm.edu;broad.mit.edu	37	19	58983203	58983203	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF324	NM_014347	exon4	c.1344delG	p.T448fs	.	.	157	11	227	0	.	90
ZNF331	55422	hgsc.bcm.edu;broad.mit.edu	37	19	54079990	54079990	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF331	NM_001253801	exon5	c.176delA	p.E59fs	.	.	182	13	224	0	.	663
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu	37	10	38344315	38344315	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF33A	NM_006954	exon5	c.1263delT	p.T421fs	.	.	155	10	167	0	.	93
ZNF419	79744	broad.mit.edu;bcgsc.ca	37	19	58005060	58005060	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF419	NM_001098491	exon5	c.1138delT	p.F380fs	.	.	63	7	113	0	.	90
ZNF425	155054	hgsc.bcm.edu;broad.mit.edu	37	7	148800796	148800796	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF425	NM_001001661	exon4	c.2167delT	p.S723fs	.	.	185	11	173	0	.	136
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	21719985	21719985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF429	NM_001001415	exon4	c.C1130A	p.A377D	.	.	28	9	33	0	.	516
ZNF440	126070	bcgsc.ca	37	19	11943697	11943697	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF440	NM_152357	exon4	c.1706delG	p.S569fs	.	.	43	5	87	0	.	68
ZNF469	84627	bcgsc.ca	37	16	88502936	88502936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001127464	exon2	c.8974delC	p.P2992fs	.	.	51	6	92	0	.	.
ZNF480	147657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52824876	52824876	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF480	NM_144684	exon5	c.373delA	p.K125fs	.	.	104	12	128	0	.	153
ZNF493	284443	bcgsc.ca	37	19	21606381	21606381	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF493	NM_001076678	exon4	c.920delC	p.T307fs	.	.	47	5	81	0	.	516
ZNF502	91392	bcgsc.ca	37	3	44763465	44763465	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF502	NM_001134440	exon4	c.1156delA	p.K386fs	.	.	58	6	95	0	.	90
ZNF507	22847	bcgsc.ca	37	19	32873700	32873700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF507	NM_001136156	exon7	c.A2573G	p.E858G	.	.	81	6	128	0	.	230
ZNF507	22847	broad.mit.edu;bcgsc.ca	37	19	32873698	32873698	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF507	NM_001136156	exon7	c.2571delA	p.S857fs	.	.	79	8	124	0	.	230
ZNF518B	85460	hgsc.bcm.edu;broad.mit.edu	37	4	10447095	10447095	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF518B	NM_053042	exon3	c.858delA	p.K286fs	.	.	165	13	168	0	.	72
ZNF536	9745	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30935925	30935925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF536	NM_014717	exon2	c.C1456A	p.H486N	.	.	60	19	75	0	.	144
ZNF576	79177	bcgsc.ca	37	19	44103398	44103398	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF576	NM_001145347	exon3	c.G501A	p.R167R	.	.	94	4	115	0	.	90
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu	37	19	37642695	37642695	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF585A	NM_199126	exon6	c.1941delA	p.K647fs	.	.	220	14	314	0	.	92
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu	37	19	37678072	37678072	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF585B	NM_152279	exon5	c.367delA	p.I123fs	.	.	191	16	210	0	.	91
ZNF608	57507	bcgsc.ca	37	5	123980342	123980342	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF608	NM_020747	exon5	c.A3718G	p.R1240G	.	.	131	5	204	0	.	229
ZNF615	284370	bcgsc.ca	37	19	52497175	52497175	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF615	NM_001199324	exon7	c.A1187G	p.N396S	.	.	113	7	132	0	.	95
ZNF628	89887	bcgsc.ca	37	19	55993175	55993175	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF628	NM_033113	exon3	c.615delC	p.R205fs	.	.	63	4	97	0	.	22
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu	37	16	31092588	31092588	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF646	NM_014699	exon2	c.4943delC	p.T1648fs	.	.	166	10	233	0	.	153
ZNF658	26149	bcgsc.ca	37	9	40774511	40774511	+	Missense_Mutation	SNP	A	A	G	rs1547270		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF658	NM_033160	exon5	c.T764C	p.I255T	.	.	782	30	1078	2	A|1.000;|0.000	45
ZNF658	26149	hgsc.bcm.edu	37	9	40784157	40784157	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF658	NM_033160	exon4	c.G188A	p.G63E	.	.	236	11	341	0	.	45
ZNF688	146542	bcgsc.ca	37	16	30581586	30581586	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF688	NM_145271	exon3	c.482delC	p.P161fs	.	.	57	6	85	0	.	68
ZNF689	115509	hgsc.bcm.edu;broad.mit.edu	37	16	30616564	30616564	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF689	NM_138447	exon3	c.524delA	p.K175fs	.	.	169	11	236	0	.	68
ZNF695	57116	bcgsc.ca	37	1	247150741	247150741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_020394	exon4	c.A1076G	p.K359R	.	.	91	4	72	0	.	.
ZNF705A	440077	hgsc.bcm.edu;broad.mit.edu	37	12	8330032	8330032	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF705A	NM_001004328	exon5	c.756delA	p.G252fs	.	.	276	17	400	0	.	90
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu	37	19	57133366	57133366	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF71	NM_021216	exon3	c.711delG	p.T237fs	.	.	165	10	242	0	.	91
ZNF733P	643955	bcgsc.ca	37	7	62752415	62752415	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	193	10	180	1	.	.
ZNF733P	643955	bcgsc.ca	37	7	62752443	62752443	+	RNA	SNP	G	G	C	rs685206	bycluster	TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	160	6	146	0	G|0.500;C|0.500	.
ZNF746	155061	bcgsc.ca	37	7	149172419	149172419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF746	NM_001163474	exon7	c.A994G	p.S332G	.	.	90	4	59	0	.	155
ZNF749	388567	hgsc.bcm.edu;broad.mit.edu	37	19	57955160	57955160	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001023561	exon3	c.644delA	p.Q215fs	.	.	140	11	166	0	.	.
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu	37	16	3367731	3367731	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF75A	NM_153028	exon6	c.753delA	p.G251fs	.	.	211	13	245	0	.	153
ZNF77	58492	hgsc.bcm.edu;broad.mit.edu	37	19	2934192	2934192	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF77	NM_021217	exon4	c.933delT	p.F311fs	.	.	180	12	262	0	.	91
ZNF778	197320	bcgsc.ca	37	16	89294119	89294119	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001201407	exon7	c.1423delA	p.K475fs	.	.	49	5	87	0	.	.
ZNF782	158431	bcgsc.ca	37	9	99581918	99581918	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF782	NM_001001662	exon6	c.T387C	p.F129F	.	.	228	8	382	0	.	90
ZNF814	730051	bcgsc.ca	37	19	58385955	58385955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144989	exon3	c.A803G	p.K268R	.	.	191	11	257	1	.	.
ZNF814	730051	hgsc.bcm.edu;broad.mit.edu	37	19	58385954	58385954	+	Frame_Shift_Del	DEL	T	T	-	rs74179449		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144989	exon3	c.804delA	p.K268fs	.	.	184	12	261	0	T|0.500;-|0.500	.
ZNF814	730051	mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	221	88	183	1	.	.
ZNF831	128611	broad.mit.edu;bcgsc.ca	37	20	57766220	57766220	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNF831	NM_178457	exon1	c.146delC	p.A49fs	.	.	57	8	113	0	.	126
ZNFX1	57169	bcgsc.ca	37	20	47865510	47865510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZNFX1	NM_021035	exon14	c.A4051T	p.T1351S	.	.	176	7	235	0	.	24
ZRANB2	9406	hgsc.bcm.edu;broad.mit.edu	37	1	71532574	71532574	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB2	NM_203350	exon9	c.814delA	p.R272fs	.	.	163	11	233	0	.	92
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	135985575	135985575	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRANB3	NM_032143	exon14	c.A1965G	p.I655M	.	.	104	37	92	0	.	658
ZRSR2	8233	bcgsc.ca	37	X	15822242	15822242	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZRSR2	NM_005089	exon5	c.321delA	p.L107fs	.	.	59	6	84	0	.	133
ZSCAN31	64288	hgsc.bcm.edu;broad.mit.edu	37	6	28295184	28295184	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	NM_030899	exon3	c.508delT	p.C170fs	.	.	143	12	195	0	.	.
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu	37	19	58189897	58189897	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZSCAN4	NM_152677	exon5	c.926delA	p.Q309fs	.	.	145	11	214	0	.	91
ZWILCH	55055	bcgsc.ca	37	15	66806411	66806411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZWILCH	NM_017975	exon3	c.T191C	p.V64A	.	.	73	4	109	0	.	91
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu	37	1	53287272	53287272	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	ZYG11B	NM_024646	exon14	c.2206delA	p.K736fs	.	.	224	15	277	0	.	94
DIXDC1	85458	bcgsc.ca	37	11	111853104	111853105	+	Splice_Site	DNP	GA	GA	AG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
OR11H12	440153	bcgsc.ca	37	14	19806889	19806890	+	RNA	DNP	AA	AA	CC	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
RBBP4P5	100288451	bcgsc.ca	37	14	22032979	22032980	+	RNA	DNP	GA	GA	AT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
CCDC144B	284047	bcgsc.ca	37	17	18498061	18498062	+	RNA	DNP	TC	TC	AT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
LCE4A	199834	hgsc.bcm.edu	37	1	152681679	152681680	+	Missense_Mutation	DNP	CC	CC	GT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.S43C	.	.	.	.	.	.	.	
FRG1B	284802	bcgsc.ca	37	20	29624033	29624034	+	Missense_Mutation	DNP	TA	TA	AG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.DI24EV	.	.	.	.	.	.	.	
CD207	50489	hgsc.bcm.edu	37	2	71062832	71062833	+	Splice_Site	DNP	TG	TG	GC	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
ARHGEF33	100271715	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	39181520	39181521	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.E382I	.	.	.	.	.	.	.	
CYFIP2	26999	hgsc.bcm.edu	37	5	156721867	156721868	+	Missense_Mutation	DNP	AG	AG	CA	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.R95Q	.	.	.	.	.	.	.	
NPVF	64111	hgsc.bcm.edu	37	7	25266572	25266573	+	Missense_Mutation	DNP	AT	AT	TC	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.I71D	.	.	.	.	.	.	.	
SSPO	23145	hgsc.bcm.edu	37	7	149476671	149476672	+	Silent	DNP	TG	TG	CT	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
GTF2IRD2P1	401375	broad.mit.edu	37	7	72664021	72664022	+	RNA	DNP	AT	AT	CA	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	AT	AT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
SRRM3	222183	bcgsc.ca	37	7	75914937	75914938	+	Missense_Mutation	DNP	GC	GC	CG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.R580P	.	.	.	.	.	.	.	
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	38148152	38148153	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.N987Y	.	.	.	.	.	.	.	
UBXN8	7993	bcgsc.ca	37	8	30620845	30620846	+	RNA	DNP	GA	GA	TG	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	.	.	.	.	.	.	.	.	
PRKDC	5591	bcgsc.ca	37	8	48805813	48805814	+	Missense_Mutation	DNP	CG	CG	GA	novel		TCGA-G3-A3CJ-01A-11D-A20W-10	TCGA-G3-A3CJ-10A-01D-A20W-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b064bc29-9a26-41f6-b49a-ae77a15d4967	fe4fd074-ca2d-42c3-9851-1c874d1f51fd	.	.	.	.	.	p.R1244S	.	.	.	.	.	.	.	
