Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	9221388	9221388	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	A2M	NM_000014	exon34	c.A4314G	p.P1438P	.	.	163	33	178	0	.	515
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87148681	87148681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCB1	NM_000927	exon24	c.T2888G	p.L963W	.	.	122	13	95	0	.	582
ABCC9	10060	bcgsc.ca	37	12	21964999	21964999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCC9	NM_005691	exon34	c.T4195C	p.F1399L	.	.	80	4	87	0	.	96
ABCC9	10060	bcgsc.ca	37	12	21998598	21998598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCC9	NM_005691	exon24	c.A3035G	p.D1012G	.	.	113	6	127	0	.	96
ABCD2	225	bcgsc.ca	37	12	39947879	39947879	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABCD2	NM_005164	exon10	c.A2058G	p.E686E	.	.	76	6	75	0	.	95
ABL2	27	broad.mit.edu	37	1	179076981	179076981	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ABL2	NM_007314	exon12	c.A3421G	p.S1141G	.	.	292	5	212	2	.	1081
ACAA2	10449	bcgsc.ca	37	18	47323852	47323852	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACAA2	NM_006111	exon3	c.T296C	p.I99T	.	.	64	4	60	1	.	91
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35631111	35631111	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACACA	NM_198834	exon9	c.T981C	p.Y327Y	.	.	163	52	165	0	.	154
ACTL9	284382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8807893	8807893	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACTL9	NM_178525	exon1	c.C1159T	p.L387L	.	.	102	29	107	0	.	154
ACTR5	79913	broad.mit.edu;bcgsc.ca	37	20	37378732	37378732	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ACTR5	NM_024855	exon2	c.T455C	p.L152P	.	.	229	9	216	0	.	90
ADAMTS20	80070	bcgsc.ca	37	12	43945676	43945676	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADAMTS20	NM_025003	exon1	c.T49C	p.F17L	.	.	61	4	89	0	.	795
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7773106	7773106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADCY2	NM_020546	exon18	c.A2276G	p.Y759C	.	.	358	128	344	0	.	97
ADRBK2	157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26117279	26117279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ADRBK2	NM_005160	exon20	c.T1820C	p.L607P	.	.	336	113	266	0	.	955
AEN	64782	bcgsc.ca	37	15	89169561	89169561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AEN	NM_022767	exon2	c.A121G	p.M41V	.	.	63	4	87	0	.	226
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100210640	100210640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AFF3	NM_001025108	exon14	c.C1558A	p.Q520K	.	.	244	72	279	0	.	230
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	38714457	38714457	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALG10B	NM_001013620	exon3	c.T864C	p.F288F	.	.	382	137	343	0	.	93
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45891384	45891384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ALOX5	NM_001256153	exon3	c.G431T	p.R144L	.	.	132	42	150	0	.	228
AMFR	267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	56443342	56443342	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AMFR	NM_001144	exon3	c.T507C	p.F169F	.	.	66	19	71	0	.	1009
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63070352	63070352	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANGPTL3	NM_014495	exon7	c.C1247C	p.A416A	.	.	269	81	259	0	.	130
ANKRD12	23253	bcgsc.ca	37	18	9256600	9256600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANKRD12	NM_015208	exon9	c.A3335G	p.N1112S	.	.	90	4	82	0	.	92
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27337837	27337837	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ANKRD26	NM_014915	exon17	c.T1707G	p.T569T	.	.	249	75	190	1	.	138
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24031766	24031766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AP1G2	NM_003917	exon15	c.1447delG	p.E483fs	.	.	120	37	116	0	.	45
APIP	51074	bcgsc.ca	37	11	34909921	34909921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	APIP	NM_015957	exon5	c.T380C	p.L127P	.	.	89	4	83	0	.	226
APLF	200558	bcgsc.ca	37	2	68794480	68794480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	APLF	NM_173545	exon9	c.C1294T	p.P432S	.	.	214	6	235	1	.	92
ARFGEF1	10565	bcgsc.ca	37	8	68116931	68116931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARFGEF1	NM_006421	exon35	c.A4943G	p.N1648S	.	.	131	5	105	0	.	294
ARFGEF1	10565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	68130369	68130369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARFGEF1	NM_006421	exon31	c.C4343T	p.A1448V	.	.	138	46	196	0	.	294
ARID5B	84159	bcgsc.ca	37	10	63850829	63850829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARID5B	NM_032199	exon10	c.A1607G	p.K536R	.	.	108	5	86	0	.	94
ARPC1B	10095	bcgsc.ca	37	7	98990326	98990326	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARPC1B	NM_005720	exon8	c.T816C	p.Y272Y	.	.	49	4	52	0	.	90
ARPP21	10777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	35763321	35763321	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARPP21	NM_016300	exon14	c.A1220C	p.K407T	.	.	206	47	255	0	.	93
ARSB	411	bcgsc.ca	37	5	78111919	78111919	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ARSB	NM_198709	exon8	c.T1232C	p.L411P	.	.	120	5	111	0	.	91
ASPH	444	bcgsc.ca	37	8	62596631	62596631	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ASPH	NM_001164754	exon2	c.T220C	p.W74R	.	.	144	5	145	0	.	93
ATRNL1	26033	bcgsc.ca	37	10	117308988	117308988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ATRNL1	NM_207303	exon26	c.T3737C	p.L1246P	.	.	96	4	110	0	.	96
AXDND1	126859	bcgsc.ca	37	1	179338083	179338083	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AXDND1	NM_144696	exon3	c.T246C	p.P82P	.	.	162	5	150	0	.	93
AXIN2	8313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	63534326	63534326	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	AXIN2	NM_004655	exon5	c.C1195T	p.R399X	.	.	204	55	173	0	.	658
B4GALT3	8703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161141842	161141842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	B4GALT3	NM_003779	exon8	c.C946A	p.Q316K	.	.	143	40	114	0	.	90
BBS9	27241	bcgsc.ca	37	7	33380521	33380521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BBS9	NM_014451	exon11	c.T1211C	p.M404T	.	.	57	4	48	0	.	230
BCL6	604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187449531	187449531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BCL6	NM_001134738	exon3	c.G349T	p.V117F	.	.	179	65	155	0	.	848
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32654298	32654298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BIRC6	NM_016252	exon11	c.A2957C	p.K986T	.	.	37	17	37	0	.	233
BMPR2	659	bcgsc.ca	37	2	203379672	203379672	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BMPR2	NM_001204	exon5	c.T591C	p.S197S	.	.	191	6	147	0	.	1003
BTBD11	121551	broad.mit.edu	37	12	108013861	108013861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	BTBD11	NM_001018072	exon11	c.A2551G	p.T851A	.	.	156	4	155	1	.	93
C11orf42	160298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6231167	6231167	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C11orf42	NM_173525	exon2	c.A160C	p.K54Q	.	.	105	34	105	0	.	91
C12orf50	160419	bcgsc.ca	37	12	88380175	88380175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C12orf50	NM_152589	exon10	c.T836C	p.V279A	.	.	54	4	60	0	.	93
C19orf24	55009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1275790	1275792	+	In_Frame_Del	DEL	GCG	GCG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCG	GCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C19orf24	NM_017914	exon1	c.242_244del	p.81_82del	.	.	70	50	32	0	.	90
C21orf91	54149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	19168929	19168942	+	Frame_Shift_Del	DEL	TCTGGACATTAGCC	TCTGGACATTAGCC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTGGACATTAGCC	TCTGGACATTAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C21orf91	NM_017447	exon3	c.621_634del	p.207_212del	.	.	254	50	261	0	.	91
C3orf79	152118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	153202472	153202472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001101337	exon1	c.T127C	p.Y43H	.	.	138	45	152	0	.	.
C7orf63	79846	bcgsc.ca	37	7	89915710	89915710	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	C7orf63	NM_001039706	exon14	c.G1653A	p.R551R	.	.	82	4	91	0	.	91
CAMKK1	84254	bcgsc.ca	37	17	3776704	3776704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CAMKK1	NM_172207	exon12	c.A1163G	p.K388R	.	.	91	5	92	0	.	334
CAPZA2	830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116544394	116544394	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CAPZA2	NM_006136	exon5	c.T383A	p.L128Q	.	.	84	35	78	0	.	514
CCBL1	883	broad.mit.edu	37	9	131595921	131595921	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCBL1	NM_001122671	exon13	c.A1211G	p.D404G	.	.	158	5	189	0	.	91
CCDC105	126402	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15121855	15121855	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC105	NM_173482	exon1	c.T218A	p.F73Y	.	.	51	6	54	1	.	91
CCDC132	55610	bcgsc.ca	37	7	92926529	92926529	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC132	NM_017667	exon16	c.T1335C	p.S445S	.	.	114	5	129	0	.	90
CCDC137	339230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79639185	79639185	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCDC137	NM_199287	exon5	c.G660A	p.Q220Q	.	.	140	77	128	0	.	69
CCNA2	890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122740571	122740571	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCNA2	NM_001237	exon5	c.C958T	p.L320L	.	.	162	63	144	1	.	848
CCNG1	900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	162866370	162866370	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CCNG1	NM_199246	exon3	c.A108C	p.L36L	.	.	133	47	171	0	.	725
CCSER1	401145	bcgsc.ca	37	4	91389399	91389399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001145065	exon5	c.T1618C	p.S540P	.	.	203	6	210	0	.	.
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	187	4	174	1	.	.
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72518964	72518964	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CD300LB	NM_174892	exon4	c.G630C	p.K210N	.	.	307	86	229	0	.	91
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54442574	54442574	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDC20B	NM_001170402	exon3	c.A237C	p.Q79H	.	.	114	42	125	0	.	90
CDC27	996	bcgsc.ca	37	17	45219593	45219593	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDC27	NM_001256	exon12	c.1378+2T>C	.	.	.	78	4	46	0	.	291
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26881298	26881298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CDH9	NM_016279	exon12	c.C2317A	p.R773S	.	.	139	44	128	0	.	99
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109795272	109795272	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CELSR2	NM_001408	exon1	c.C2571T	p.G857G	.	.	226	100	158	0	.	526
CEP350	9857	bcgsc.ca	37	1	180063165	180063165	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CEP350	NM_014810	exon34	c.A7925G	p.D2642G	.	.	236	7	186	0	.	26
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	53358774	53358774	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CHD9	NM_025134	exon39	c.A8613C	p.S2871S	.	.	294	97	284	1	.	272
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220406586	220406586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CHPF	NM_024536	exon2	c.G640A	p.G214S	.	.	125	39	68	0	.	90
CIB1	10519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90773726	90773726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CIB1	NM_006384	exon7	c.T566G	p.I189S	.	.	166	56	178	0	.	130
CLASP1	23332	broad.mit.edu	37	2	122206661	122206661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CLASP1	NM_001207051	exon17	c.A1559G	p.E520G	.	.	185	5	181	0	.	91
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11896203	11896203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CLCN6	NM_001286	exon18	c.A1973T	p.K658M	.	.	138	50	149	0	.	90
CMTM8	152189	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	32280486	32280486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CMTM8	NM_178868	exon1	c.C22T	p.R8C	.	.	225	92	210	1	.	90
CNPY2	10330	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	56708923	56708923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNPY2	NM_014255	exon2	c.C79T	p.H27Y	.	.	136	53	125	0	.	68
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205038645	205038645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNTN2	NM_005076	exon17	c.A2152G	p.S718G	.	.	156	36	124	0	.	91
CNTRL	11064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123922548	123922548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CNTRL	NM_007018	exon30	c.T5057C	p.V1686A	.	.	200	56	234	0	.	661
COBLL1	22837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	165542496	165542496	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	COBLL1	NM_014900	exon14	c.T3461G	p.L1154R	.	.	93	34	96	0	.	93
CSNK1G2-AS1	255193	ucsc.edu;mdanderson.org	37	19	1953388	1953388	+	RNA	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	170	56	176	0	.	.
CSNK2A3	283106	broad.mit.edu;ucsc.edu	37	11	11373655	11373655	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001256686	exon1	c.A1012G	p.S338G	.	.	99	40	94	0	.	.
CTAGE9	643854	broad.mit.edu	37	6	132030680	132030680	+	Missense_Mutation	SNP	C	C	G	rs3873679		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001145659	exon1	c.G1478C	p.R493T	.	.	864	6	836	1	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	.	.	329	98	398	0	.	24361
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266110	41266110	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.A107C	p.H36P	.	.	330	96	382	0	.	24361
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43174240	43174240	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CUL9	NM_015089	exon26	c.A5204G	p.Y1735C	.	.	183	70	210	1	.	529
CXorf56	63932	bcgsc.ca	37	X	118679442	118679442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CXorf56	NM_022101	exon3	c.A268G	p.R90G	.	.	141	5	150	0	.	130
CYSLTR1	10800	bcgsc.ca	37	X	77528951	77528951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	CYSLTR1	NM_006639	exon3	c.T293C	p.L98P	.	.	68	4	76	0	.	131
DDIT3	1649	broad.mit.edu;bcgsc.ca	37	12	57911095	57911095	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	DDIT3,brain,glioma,-1	DDIT3	NM_001195054	exon3	c.A164T	p.D55V	.	.	75	5	87	0	.	1171
DHX15	1665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24529578	24529578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DHX15	NM_001358	exon14	c.A2357C	p.K786T	.	.	173	65	141	0	.	91
DIAPH1	1729	bcgsc.ca	37	5	140953081	140953101	+	In_Frame_Del	DEL	AGCTGCACCTCTGGCTTATAA	AGCTGCACCTCTGGCTTATAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	AGCTGCACCTCTGGCTTATAA	AGCTGCACCTCTGGCTTATAA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DIAPH1	NM_005219	exon16	c.2316_2336del	p.772_779del	.	.	53	3	78	0	.	91
DLGAP4	22839	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35125206	35125206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DLGAP4	NM_014902	exon7	c.G1747C	p.E583Q	.	.	178	61	177	1	.	94
DLX5	1749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	96651649	96651649	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DLX5	NM_005221	exon2	c.G388A	p.V130M	.	.	67	33	79	0	.	515
DMBX1	127343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46972704	46972704	+	Missense_Mutation	SNP	G	G	A	rs150745846		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DMBX1	NM_147192	exon1	c.G22A	p.G8S	.	.	408	142	391	0	G|1.000;A|0.000	227
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7721651	7721651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAH2	NM_020877	exon68	c.T10409C	p.I3470T	.	.	236	70	185	0	.	102
DNAH8	1769	bcgsc.ca	37	6	38885910	38885910	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAH8	NM_001206927	exon70	c.T10518C	p.P3506P	.	.	74	4	60	0	.	615
DNAJC15	29103	broad.mit.edu	37	13	43652823	43652823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAJC15	NM_013238	exon4	c.A310G	p.S104G	.	.	534	11	537	0	.	650
DNAJC25	548645	bcgsc.ca	37	9	114412004	114412004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNAJC25	NM_001015882	exon3	c.T761C	p.F254S	.	.	132	5	127	0	.	22
DNMT3L	29947	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	45670830	45670830	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DNMT3L	NM_013369	exon10	c.T772C	p.W258R	.	.	112	48	103	3	.	228
DSCC1	79075	bcgsc.ca	37	8	120867855	120867855	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DSCC1	NM_024094	exon1	c.A181G	p.S61G	.	.	54	4	34	0	.	228
DTNA	1837	bcgsc.ca	37	18	32405229	32405229	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DTNA	NM_032979	exon11	c.1002-2A>G	.	.	.	173	5	187	1	.	153
DYNC2H1	79659	bcgsc.ca	37	11	103173889	103173889	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DYNC2H1	NM_001080463	exon77	c.A11184G	p.E3728E	.	.	93	5	81	0	.	68
DZIP1	22873	bcgsc.ca	37	13	96263706	96263706	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	DZIP1	NM_014934	exon12	c.A1356G	p.E452E	.	.	87	5	106	0	.	92
EDC3	80153	bcgsc.ca	37	15	74927950	74927950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EDC3	NM_001142444	exon7	c.T992C	p.V331A	.	.	110	5	113	0	.	91
EEPD1	80820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36336620	36336620	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EEPD1	NM_030636	exon7	c.T1334C	p.I445T	.	.	110	42	91	0	.	68
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	104698075	104698075	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001008394	exon1	c.C363T	p.D121D	.	.	251	80	218	0	.	.
EIF3IP1	442720	bcgsc.ca	37	7	109599754	109599754	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	32	5	33	0	.	.
EIF4ENIF1	56478	bcgsc.ca	37	22	31851871	31851871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EIF4ENIF1	NM_019843	exon8	c.T1066C	p.S356P	.	.	188	6	170	1	.	91
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184040633	184040633	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EIF4G1	NM_001194946	exon14	c.A1841G	p.E614G	.	.	119	33	95	0	.	344
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	95236720	95236720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A806G	p.Q269R	.	.	158	47	190	0	.	90
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	95236730	95236730	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELL2	NM_012081	exon6	c.A796T	p.K266X	.	.	149	45	192	0	.	90
ELP3	55140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	28013470	28013470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ELP3	NM_018091	exon11	c.T1112C	p.M371T	.	.	197	11	192	0	.	90
ENOSF1	55556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	683313	683313	+	Missense_Mutation	SNP	A	A	C	rs144642877	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ENOSF1	NM_202758	exon11	c.T872G	p.F291C	.	.	266	90	238	0	A|1.000;T|0.000	91
ENTPD5	957	bcgsc.ca	37	14	74442694	74442694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ENTPD5	NM_001249	exon10	c.G667A	p.G223S	.	.	51	4	45	0	.	91
EPB49	2039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	21924617	21924617	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPB49	NM_001978	exon3	c.A40G	p.S14G	.	.	200	62	227	0	.	90
EPRS	2058	hgsc.bcm.edu	37	1	220146576	220146631	+	Frame_Shift_Del	DEL	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	CTACCTTGTGAAAAGGGTGACCTGGATGTCTTCCAAAATAGCTTGAAGTTTAGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPRS	NM_004446	exon29	c.4193_4244del	p.1398_1415del	.	.	128	0	138	0	.	92
EPRS	2058	hgsc.bcm.edu;bcgsc.ca	37	1	220146578	220146578	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EPRS	NM_004446	exon30	c.4244+2T>C	.	.	.	135	21	150	0	.	92
ERBB2	2064	bcgsc.ca	37	17	37884188	37884188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ERBB2	NM_004448	exon27	c.T3659C	p.L1220P	.	.	56	4	48	0	.	9959
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	45860557	45860557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ERCC2	NM_000400	exon15	c.A1450G	p.T484A	.	.	169	66	179	0	.	848
EXD1	161829	bcgsc.ca	37	15	41488178	41488178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	EXD1	NM_152596	exon6	c.T418C	p.F140L	.	.	86	4	101	0	.	91
FAM133A	286499	broad.mit.edu;bcgsc.ca	37	X	92964586	92964586	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM133A	NM_173698	exon4	c.A168G	p.K56K	.	.	55	4	61	0	.	130
FAM13B	51306	bcgsc.ca	37	5	137284776	137284776	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001101800	exon17	c.A1962G	p.E654E	.	.	144	5	136	0	.	.
FAM189B	10712	broad.mit.edu	37	1	155217657	155217657	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM189B	NM_006589	exon12	c.T1923C	p.R641R	.	.	431	8	314	1	.	154
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33875240	33875240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FAM83C	NM_178468	exon4	c.C1342T	p.R448C	.	.	86	35	101	0	.	92
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80039907	80039907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon36	c.A6141C	p.K2047N	.	.	76	16	39	0	.	90
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80037282	80037282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FASN	NM_004104	exon42	c.C7349T	p.T2450M	.	.	185	51	150	0	.	90
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8211044	8211044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FBN3	NM_032447	exon3	c.G316A	p.G106R	.	.	269	15	274	0	.	100
FCF1	51077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75190045	75190045	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCF1	NM_015962	exon5	c.A363C	p.L121L	.	.	137	48	198	0	.	91
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	72377662	72377662	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FCHO2	NM_138782	exon23	c.A2033C	p.K678T	.	.	151	51	153	0	.	23
FLNB	2317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	58141694	58141694	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FLNB	NM_001164317	exon42	c.C6873G	p.Y2291X	.	.	69	20	75	0	.	593
FREM1	158326	bcgsc.ca	37	9	14846080	14846080	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FREM1	NM_144966	exon9	c.T1271C	p.L424P	.	.	176	6	190	0	.	138
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	39263846	39263886	+	Frame_Shift_Del	DEL	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	CCGGGTCAAGAACTGGGCGTGGCTACTCGAGTGGCCCAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FREM2	NM_207361	exon1	c.2365_2405del	p.789_802del	.	.	77	14	95	0	.	100
FSCB	84075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	44974659	44974659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FSCB	NM_032135	exon1	c.C1532T	p.P511L	.	.	100	32	148	1	.	587
FSCN1	6624	bcgsc.ca	37	7	5642920	5642920	+	Missense_Mutation	SNP	A	A	G	rs113330783		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	FSCN1	NM_003088	exon2	c.A865G	p.T289A	.	.	71	4	60	0	A|0.500;G|0.500	91
GABRR1	2569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	89899880	89899888	+	Frame_Shift_Del	DEL	TCACAGCTT	TCACAGCTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCACAGCTT	TCACAGCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GABRR1	NM_002042	exon6	c.651_655del	p.217_219del	.	.	97	19	143	0	.	91
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171713607	171713607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GAD1	NM_000817	exon15	c.A1493G	p.E498G	.	.	87	25	67	0	.	91
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33267146	33267146	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GALNT1	NM_020474	exon5	c.G856C	p.V286L	.	.	88	21	135	0	.	92
GBGT1	26301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136029633	136029633	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBGT1	NM_021996	exon7	c.C375T	p.I125I	.	.	23	11	26	0	.	90
GBP3	2635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89480301	89480301	+	Silent	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GBP3	NM_018284	exon4	c.C357A	p.A119A	.	.	297	138	229	0	.	92
GCNT3	9245	bcgsc.ca	37	15	59911541	59911541	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GCNT3	NM_004751	exon3	c.T1104C	p.G368G	.	.	141	6	136	0	.	91
GCSAML	148823	bcgsc.ca	37	1	247729252	247729252	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_145278	exon4	c.T159C	p.T53T	.	.	123	6	78	0	.	.
GDAP1	54332	bcgsc.ca	37	8	75263608	75263608	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GDAP1	NM_018972	exon2	c.T217C	p.S73P	.	.	171	6	222	0	.	90
GJB5	2709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35223387	35223387	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GJB5	NM_005268	exon2	c.C456A	p.F152L	.	.	95	29	103	0	.	91
GNB5	10681	broad.mit.edu;bcgsc.ca	37	15	52416767	52416767	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GNB5	NM_016194	exon12	c.T1079C	p.V360A	.	.	188	10	168	0	.	227
GNS	2799	bcgsc.ca	37	12	65137090	65137090	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GNS	NM_002076	exon7	c.625-2A>G	.	.	.	126	5	129	1	.	514
GPR25	2848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	200843249	200843249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR25	NM_005298	exon1	c.T1084G	p.X362E	.	.	42	19	37	0	.	91
GPR98	84059	bcgsc.ca	37	5	90041444	90041444	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon52	c.A10806G	p.E3602E	.	.	91	4	111	0	.	103
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90079723	90079723	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon67	c.T13502C	p.L4501P	.	.	116	52	95	0	.	103
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90079728	90079728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPR98	NM_032119	exon67	c.A13507C	p.S4503R	.	.	119	21	103	0	.	103
GPRC6A	222545	bcgsc.ca	37	6	117150146	117150146	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GPRC6A	NM_148963	exon1	c.T31C	p.F11L	.	.	137	5	158	0	.	96
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	153065884	153065884	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GRIA1	NM_001258021	exon8	c.C1159T	p.R387X	.	.	101	14	102	0	.	96
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	10273990	10273990	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GRIN2A	NM_000833	exon3	c.A279G	p.A93A	.	.	178	35	170	0	.	349
GTF3C3	9330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197643775	197643775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GTF3C3	NM_012086	exon10	c.T1235C	p.L412P	.	.	149	47	175	0	.	97
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65425954	65425954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	GUSB	NM_000181	exon12	c.T1886A	p.I629N	.	.	276	85	308	0	.	90
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63943568	63943568	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon53	c.C10430T	p.A3477V	.	.	75	32	90	0	.	666
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63967194	63967194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC1	NM_003922	exon38	c.A7193T	p.Y2398F	.	.	260	83	317	0	.	666
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28482110	28482110	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC2	NM_004667	exon26	c.C4002T	p.A1334A	.	.	306	107	300	0	.	234
HERC3	8916	bcgsc.ca	37	4	89601284	89601284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HERC3	NM_014606	exon20	c.T2237C	p.V746A	.	.	96	6	81	0	.	660
HMGN2P46	283651	ucsc.edu	37	15	45848153	45848153	+	RNA	SNP	C	C	T	rs12440560	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	14	6	10	0	C|0.949;T|0.051	.
HNRNPA2B1	3181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	26237265	26237265	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HNRNPA2B1	NM_031243	exon3	c.T130G	p.W44G	.	.	158	40	201	1	.	70
HPSE2	60495	bcgsc.ca	37	10	100453696	100453696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HPSE2	NM_001166246	exon6	c.A965G	p.K322R	.	.	99	5	101	0	.	91
HSFY1	86614	hgsc.bcm.edu	37	Y	20708853	20708853	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_152584	exon1	c.180delA	p.P60fs	.	.	178	63	151	0	.	.
HSFY1	86614	hgsc.bcm.edu	37	Y	20935324	20935324	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_152584	exon1	c.181delA	p.S61fs	.	.	182	59	134	0	.	.
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65008467	65008467	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HSPA2	NM_021979	exon1	c.C900T	p.I300I	.	.	89	34	65	0	.	226
HSPB2	3316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111784419	111784419	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	HSPB2	NM_001541	exon2	c.T349C	p.F117L	.	.	145	60	128	1	.	659
IFITM3	10410	broad.mit.edu	37	11	320606	320606	+	Missense_Mutation	SNP	G	G	T	rs199749095	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	IFITM3,brain,glioma,0	IFITM3	NM_021034	exon1	c.C208A	p.P70T	.	.	166	7	166	0	G|0.936;T|0.064	519
IFNGR1	3459	broad.mit.edu	37	6	137525514	137525514	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IFNGR1	NM_000416	exon4	c.T501C	p.C167C	.	.	273	5	244	0	.	91
IGFBP3	3486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45956856	45956856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGFBP3	NM_001013398	exon2	c.G604A	p.D202N	.	.	169	60	191	0	.	1009
IGSF5	150084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	41160116	41160116	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IGSF5	NM_001080444	exon6	c.956+1G>A	.	.	.	197	10	186	0	.	68
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55259985	55259985	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IL6ST	NM_175767	exon6	c.C647A	p.P216H	.	.	225	78	198	0	.	290
INTS8	55656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	95892461	95892461	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	INTS8	NM_017864	exon27	c.A2987C	p.X996S	.	.	107	36	88	0	.	90
IQCC	55721	bcgsc.ca	37	1	32671456	32671456	+	Silent	SNP	T	T	C	rs148328442	by1000genomes	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	IQCC	NM_001160042	exon1	c.T174C	p.A58A	.	.	187	6	148	1	T|0.998;C|0.002	94
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52347345	52347345	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITGA2	NM_002203	exon7	c.T735C	p.Y245Y	.	.	165	50	158	0	.	226
ITGA7	3679	broad.mit.edu;bcgsc.ca	37	12	56089347	56089347	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITGA7	NM_001144996	exon14	c.C1974G	p.F658L	.	.	257	9	242	0	.	229
ITGB3BP	23421	broad.mit.edu;bcgsc.ca	37	1	63920133	63920142	+	Frame_Shift_Del	DEL	GCCCTCCAAA	GCCCTCCAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCCCTCCAAA	GCCCTCCAAA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITGB3BP	NM_001206739	exon7	c.453_462del	p.151_154del	.	.	257	9	231	0	.	90
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52823733	52823733	+	Silent	SNP	G	G	C	rs145442481	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITIH1	NM_002215	exon19	c.G2184C	p.T728T	.	.	110	40	112	0	G|1.000;A|0.000	93
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48832330	48832330	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITM2B	NM_021999	exon4	c.T522C	p.V174V	.	.	231	12	206	0	.	90
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4776907	4776907	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ITPR1	NM_001168272	exon43	c.T5368C	p.C1790R	.	.	101	39	135	0	.	710
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15468853	15468853	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	JARID2	NM_004973	exon5	c.A574T	p.T192S	.	.	209	90	175	0	.	228
KCNH5	27133	bcgsc.ca	37	14	63483651	63483651	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KCNH5	NM_172375	exon2	c.A95G	p.N32S	.	.	64	4	59	0	.	98
KCNH7	90134	bcgsc.ca	37	2	163374398	163374398	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KCNH7	NM_033272	exon4	c.A734G	p.D245G	.	.	210	6	202	3	.	95
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39671772	39671772	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KCNJ15	NM_170736	exon3	c.A589G	p.S197G	.	.	67	16	61	0	.	157
KDR	3791	broad.mit.edu;bcgsc.ca	37	4	55948168	55948168	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KDR	NM_002253	exon29	c.A3803G	p.E1268G	.	.	135	6	170	1	.	2298
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10602811	10602812	+	Frame_Shift_Ins	INS	-	-	CGTA	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon3	c.767_768insTACG	p.D256fs	.	.	102	18	84	0	.	637
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10610398	10610398	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KEAP1	NM_012289	exon2	c.C312A	p.S104R	.	.	157	55	145	0	.	637
KIAA0247	9766	bcgsc.ca	37	14	70170301	70170301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0247	NM_014734	exon3	c.T311C	p.L104P	.	.	116	5	97	0	.	93
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27788950	27788950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0556	NM_015202	exon26	c.T4571G	p.L1524R	.	.	95	33	122	0	.	141
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58895077	58895077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0586	NM_001244189	exon2	c.A131G	p.H44R	.	.	257	82	225	0	.	23
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5454677	5454677	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA0947	NM_015325	exon11	c.T617C	p.L206P	.	.	110	39	87	0	.	48
KIAA1244	57221	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138608320	138608320	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1244	NM_020340	exon17	c.A2895C	p.Q965H	.	.	30	13	29	0	.	228
KIAA1456	57604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	12879028	12879028	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1456	NM_020844	exon5	c.C840A	p.S280R	.	.	145	43	123	0	.	90
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36848153	36848153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIAA1755	NM_001029864	exon11	c.C2435T	p.A812V	.	.	97	25	86	0	.	95
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28974375	28974375	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3810G	p.R1270R	.	.	234	74	262	0	.	22
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28974384	28974384	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF13B	NM_015254	exon31	c.A3801G	p.L1267L	.	.	247	76	274	0	.	22
KIF26B	55083	broad.mit.edu;bcgsc.ca	37	1	245809512	245809512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KIF26B	NM_018012	exon10	c.T2188C	p.C730R	.	.	252	7	173	0	.	25
KLB	152831	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39409343	39409343	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KLB	NM_175737	exon1	c.A774T	p.G258G	.	.	196	65	207	1	.	69
KLF5	688	bcgsc.ca	37	13	73636081	73636081	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KLF5	NM_001730	exon2	c.A344G	p.D115G	.	.	130	6	140	0	.	155
KPNA1	3836	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122186176	122186176	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KPNA1	NM_002264	exon3	c.T230A	p.M77K	.	.	212	43	203	1	.	226
KPNA1	3836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	122146558	122146558	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KPNA1	NM_002264	exon13	c.T1256C	p.L419P	.	.	55	24	54	0	.	226
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140461	39140461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_182497	exon3	c.C65T	p.A22V	.	.	140	59	109	0	.	.
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53227630	53227630	+	Missense_Mutation	SNP	G	G	A	rs140167313		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KRT79	NM_175834	exon1	c.C415T	p.R139C	.	.	182	65	190	0	G|0.999;A|0.000	72
KSR1	8844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	25928943	25928943	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	KSR1	NM_014238	exon12	c.A1124C	p.K375T	.	.	143	42	126	0	.	964
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62676374	62676374	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	L1TD1	NM_001164835	exon5	c.T1928C	p.L643S	.	.	155	48	161	0	.	92
LACTB2	51110	hgsc.bcm.edu;broad.mit.edu	37	8	71581340	71581340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LACTB2	NM_016027	exon1	c.C16T	p.Q6X	.	.	98	7	101	0	.	227
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21418835	21418835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LAMA3	NM_001127717	exon26	c.A3184G	p.N1062D	.	.	258	74	314	0	.	100
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225611703	225611703	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LBR	NM_194442	exon2	c.A75G	p.V25V	.	.	192	46	165	0	.	228
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	109000723	109000723	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LEF1	NM_016269	exon7	c.G770A	p.G257D	.	.	141	58	174	0	.	721
LIAS	11019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39460742	39460742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LIAS	NM_194451	exon1	c.C5A	p.S2Y	.	.	59	11	52	0	.	90
LIPI	149998	bcgsc.ca	37	21	15538747	15538747	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LIPI	NM_198996	exon5	c.A732G	p.G244G	.	.	72	4	82	0	.	70
LITAF	9516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	11647418	11647418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LITAF	NM_001136473	exon3	c.G348T	p.W116C	.	.	50	12	48	0	.	227
LOC646813	0	bcgsc.ca	37	11	50378119	50378119	+	RNA	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	69	5	69	0	.	.
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	14261860	14261860	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LPHN1	NM_001008701	exon24	c.C4250A	p.P1417H	.	.	91	42	40	0	.	523
LPHN3	23284	bcgsc.ca	37	4	62863966	62863966	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LPHN3	NM_015236	exon18	c.C3174T	p.G1058G	.	.	84	4	81	0	.	508
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57601983	57601983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP1	NM_002332	exon77	c.G12022A	p.V4008M	.	.	128	37	108	0	.	596
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170033099	170033110	+	Splice_Site	DEL	CTAGTGGAAAAG	CTAGTGGAAAAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CTAGTGGAAAAG	CTAGTGGAAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRP2	.	.	.	.	.	.	66	10	95	0	.	175
LRRC27	80313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134161592	134161592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRRC27	NM_001143758	exon6	c.C658T	p.P220S	.	.	106	41	93	0	.	91
LRRC40	55631	broad.mit.edu	37	1	70616833	70616833	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LRRC40	NM_017768	exon13	c.A1495G	p.T499A	.	.	346	7	293	2	.	91
LSP1P3	729862	bcgsc.ca	37	5	28926967	28926967	+	RNA	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	45	9	47	0	.	.
LUC7L	55692	bcgsc.ca	37	16	258151	258151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	LUC7L	NM_201412	exon4	c.G292A	p.D98N	.	.	137	6	128	0	.	90
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	78130892	78130893	+	Splice_Site	INS	-	-	CT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon6	c.965+2->AG	.	.	.	137	43	160	0	.	461
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	78130909	78130909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAGI2	NM_012301	exon5	c.A950C	p.E317A	.	.	171	61	190	0	.	461
MANF	7873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51426503	51426503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_006010	exon4	c.G532A	p.A178T	.	.	100	41	94	0	.	.
MAP10	54627	hgsc.bcm.edu;broad.mit.edu	37	1	232941381	232941381	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_019090	exon1	c.G612A	p.L204L	.	.	50	4	31	0	.	.
MAP4K3	8491	bcgsc.ca	37	2	39487809	39487809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MAP4K3	NM_003618	exon29	c.A2246G	p.N749S	.	.	63	4	74	0	.	550
MBIP	51562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36785921	36785921	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MBIP	NM_016586	exon2	c.A227C	p.E76A	.	.	230	63	217	0	.	658
MCMBP	79892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121616890	121616890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MCMBP	NM_024834	exon5	c.A389G	p.Y130C	.	.	131	46	109	0	.	93
MEOX2	4223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	15725601	15725601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	MEOX2,NS,carcinoma,+2	MEOX2	NM_005924	exon1	c.G427A	p.A143T	.	.	82	35	48	0	.	515
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	51323788	51323788	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.590delT	p.L197fs	.	.	104	24	132	0	.	90
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51323795	51323795	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	METTL7A	NM_014033	exon2	c.T597C	p.F199F	.	.	97	26	112	0	.	90
MEX3B	84206	broad.mit.edu	37	15	82336789	82336789	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MEX3B	NM_032246	exon2	c.G422A	p.R141Q	.	.	86	3	83	0	.	226
MLF1IP	79682	bcgsc.ca	37	4	185622012	185622012	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MLF1IP	NM_024629	exon11	c.A948G	p.K316K	.	.	148	5	109	0	.	90
MLH1	4292	bcgsc.ca	37	3	37070421	37070421	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MLH1	NM_000249	exon13	c.A1556G	p.E519G	.	.	90	5	77	0	.	2559
MMRN1	22915	bcgsc.ca	37	4	90816443	90816443	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MMRN1	NM_007351	exon1	c.A321G	p.E107E	.	.	141	6	105	0	.	94
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62929480	62929480	+	Missense_Mutation	SNP	T	T	C	rs201313378	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MON2	NM_015026	exon14	c.T1891C	p.S631P	.	.	180	61	206	0	T|0.999;G|0.001	514
MPP4	58538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202549803	202549803	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MPP4	NM_033066	exon7	c.G558A	p.G186G	.	.	121	35	95	0	.	22
MPRIP	23164	bcgsc.ca	37	17	17079741	17079741	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MPRIP	NM_015134	exon20	c.T2711C	p.V904A	.	.	84	4	62	0	.	90
MPZL2	10205	broad.mit.edu	37	11	118133701	118133701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MPZL2	NM_005797	exon2	c.A170G	p.D57G	.	.	185	6	176	1	.	69
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56584192	56584192	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MTMR4	NM_004687	exon10	c.A903C	p.A301A	.	.	114	18	80	0	.	91
MUC4	4585	bcgsc.ca	37	3	195506007	195506007	+	Silent	SNP	G	G	A	rs71635085		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MUC4	NM_018406	exon2	c.C12444T	p.T4148T	.	.	223	14	167	4	G|1.000;|0.000	90
MYO18B	84700	ucsc.edu;bcgsc.ca	37	22	26228913	26228913	+	Silent	SNP	G	G	A	rs34414355	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MYO18B	NM_032608	exon16	c.G3009A	p.P1003P	.	.	104	33	78	1	G|0.983;A|0.017	142
MYOCD	93649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12642602	12642602	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	MYOCD	NM_001146312	exon7	c.T674G	p.L225R	.	.	55	25	57	0	.	93
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48596057	48596057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	N4BP1	NM_153029	exon2	c.C497T	p.A166V	.	.	178	58	147	0	.	22
N4BP2	55728	bcgsc.ca	37	4	40099182	40099182	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	N4BP2	NM_018177	exon3	c.T222C	p.D74D	.	.	84	4	67	0	.	602
NCOA3	8202	bcgsc.ca	37	20	46277852	46277852	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NCOA3	NM_181659	exon19	c.A3650C	p.Q1217P	.	.	60	4	38	0	.	229
NEB	4703	broad.mit.edu	37	2	152370178	152370178	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NEB	NM_001271208	exon161	c.A23262G	p.E7754E	.	.	127	4	170	0	.	145
NF1	4763	bcgsc.ca	37	17	29587397	29587397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NF1	NM_001042492	exon34	c.G4441T	p.D1481Y	.	.	86	4	87	0	.	3353
NF1	4763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	29496954	29496954	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NF1	NM_001128147	exon5	c.T525C	p.H175H	.	.	84	28	64	0	.	3353
NFATC3	4775	bcgsc.ca	37	16	68160405	68160405	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NFATC3	NM_173163	exon3	c.T1293C	p.C431C	.	.	231	8	216	1	.	92
NIP7	51388	bcgsc.ca	37	16	69375131	69375131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NIP7	NM_016101	exon4	c.A331G	p.N111D	.	.	182	6	204	0	.	153
NIPBL	25836	bcgsc.ca	37	5	36953852	36953852	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NIPBL	NM_015384	exon2	c.T54C	p.S18S	.	.	87	4	82	0	.	293
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56320455	56320455	+	Silent	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NLRP11	NM_145007	exon5	c.T1521G	p.L507L	.	.	177	58	189	0	.	169
NOP14-AS1	317648	ucsc.edu	37	4	2940438	2940438	+	RNA	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	33	1	23	0	.	.
NOP2	4839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6673088	6673088	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP2	NM_001258309	exon7	c.C598T	p.R200W	.	.	82	28	81	0	.	92
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2633966	2633966	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NOP56	NM_006392	exon3	c.C135G	p.I45M	.	.	261	44	303	0	.	92
NOXRED1	122945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77873885	77873885	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001113475	exon3	c.T453C	p.N151N	.	.	133	47	156	0	.	.
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44579886	44579886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NPC1L1	NM_001101648	exon2	c.A110G	p.D37G	.	.	77	27	79	0	.	94
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52289359	52289359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NRD1	NM_002525	exon9	c.T1340C	p.M447T	.	.	185	72	202	0	.	90
NTN1	9423	bcgsc.ca	37	17	8926009	8926009	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NTN1	NM_004822	exon2	c.T319C	p.F107L	.	.	96	5	85	0	.	90
NUMA1	4926	hgsc.bcm.edu	37	11	71723462	71723628	+	In_Frame_Del	DEL	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	TCTCTGAAATACCTCTAGCTGCTCCACCTGTACATGGGGGAGGAGCAACAGAGACAGAGTGAGATGAGGCCAAAGAAGCACCAGCCCTGCTGCCAGGCTGACCTCACTGAGGCTCTGATACTTTCCCCTAAGGAGCTAGATTGACAGTAAGTTTAAAAATGCCAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	NUMA1	NM_006185	exon16	c.4609_4635del	p.1537_1545del	.	.	72	0	67	0	.	633
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228469861	228469861	+	Missense_Mutation	SNP	T	T	C	rs189169421	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	OBSCN_ENST00000359599,NS,carcinoma,0	OBSCN	NM_001271223	exon36	c.T9712C	p.F3238L	.	.	303	172	254	0	T|0.999;G|0.001	403
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20215878	20215878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OR4Q3	NM_172194	exon1	c.T292C	p.C98R	.	.	92	38	65	0	.	71
OTOP1	133060	bcgsc.ca	37	4	4199429	4199429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OTOP1	NM_177998	exon5	c.T1132C	p.S378P	.	.	160	6	198	0	.	92
OVCH2	341277	bcgsc.ca	37	11	7716377	7716377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OVCH2	NM_198185	exon13	c.T1325C	p.L442P	.	.	97	5	101	0	.	68
OVGP1	5016	broad.mit.edu	37	1	111957140	111957140	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	OVGP1	NM_002557	exon11	c.T1983C	p.P661P	.	.	159	5	103	0	.	135
PACS2	23241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105818768	105818768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PACS2	NM_001100913	exon3	c.A261C	p.Q87H	.	.	205	72	212	0	.	69
PAIP2	51247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138704424	138704429	+	In_Frame_Del	DEL	CAAGAG	CAAGAG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CAAGAG	CAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PAIP2	NM_001033112	exon4	c.321_326del	p.107_109del	.	.	132	25	165	0	.	68
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66618658	66618658	+	Silent	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PC	NM_000920	exon16	c.G2076C	p.A692A	.	.	66	28	48	0	.	228
PCDHA3	56145	ucsc.edu	37	5	140180947	140180947	+	Missense_Mutation	SNP	G	G	T	rs199783721	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PCDHA3	NM_031497	exon1	c.G165T	p.E55D	.	.	59	10	85	10	G|0.957;T|0.043	98
PCF11	51585	bcgsc.ca	37	11	82877749	82877749	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PCF11	NM_015885	exon5	c.A1810G	p.N604D	.	.	107	5	93	0	.	23
PCLO	27445	bcgsc.ca	37	7	82595753	82595753	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PCLO	NM_014510	exon4	c.A3351G	p.G1117G	.	.	114	5	119	0	.	29
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31793110	31793110	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE1C	NM_001191058	exon19	c.C2198A	p.A733E	.	.	179	70	149	0	.	94
PDE4A	5141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10531543	10531543	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4A	NM_001111307	exon1	c.C103A	p.R35R	.	.	20	12	24	0	.	523
PDE4D	5144	bcgsc.ca	37	5	58287779	58287779	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4D	NM_001104631	exon8	c.A1068G	p.K356K	.	.	103	4	127	0	.	226
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	144921895	144921895	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDE4DIP	NM_001002811	exon5	c.T1623C	p.F541F	.	.	418	55	358	0	.	663
PDHX	8050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	35006206	35006206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDHX	NM_003477	exon9	c.A1113C	p.K371N	.	.	131	28	140	0	.	226
PDK2	5164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48174927	48174927	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PDK2	NM_002611	exon2	c.T259C	p.W87R	.	.	62	16	42	0	.	803
PECAM1	5175	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	17	62407077	62407077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_000442	exon1	c.G7A	p.V3M	.	.	101	42	72	0	.	.
PECR	55825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216923626	216923626	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PECR	NM_018441	exon4	c.A498T	p.P166P	.	.	192	66	202	0	.	90
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83896734	83896734	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PGM3	NM_001199917	exon5	c.A534G	p.Q178Q	.	.	246	74	216	0	.	90
PHLDA1	22822	bcgsc.ca	37	12	76424809	76424809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDA1	NM_007350	exon1	c.A713G	p.K238R	.	.	61	4	55	0	.	90
PHLDA1	22822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	76425350	76425350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDA1	NM_007350	exon1	c.G172A	p.D58N	.	.	155	66	122	0	.	90
PHLDB2	90102	hgsc.bcm.edu;bcgsc.ca	37	3	111632427	111632427	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PHLDB2	NM_001134437	exon4	c.1678delT	p.F560fs	.	.	150	51	115	0	.	96
PI4KB	5298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	151280253	151280253	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PI4KB	NM_002651	exon5	c.G1015T	p.E339X	.	.	226	105	219	0	.	268
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27124244	27124259	+	Frame_Shift_Del	DEL	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GTTCTCCAGTCACACG	GTTCTCCAGTCACACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PIGV	NM_001202554	exon4	c.1391_1406del	p.464_469del	.	.	117	23	150	0	.	91
PIK3R1	5295	bcgsc.ca	37	5	67591136	67591136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PIK3R1	NM_181523	exon13	c.A1729G	p.R577G	.	.	151	5	159	0	.	4332
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2140513	2140513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PKD1	NM_001009944	exon45	c.A12217G	p.T4073A	.	.	76	28	52	0	.	91
PLCD1	5333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38061825	38061825	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLCD1	NM_001130964	exon2	c.A116T	p.D39V	.	.	100	30	124	0	.	226
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	57752800	57752800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLK2	NM_006622	exon8	c.A1128G	p.K376K	.	.	145	53	96	0	.	409
PLTP	5360	bcgsc.ca	37	20	44536384	44536384	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PLTP	NM_006227	exon7	c.T560C	p.V187A	.	.	93	4	106	0	.	91
POLI	11201	bcgsc.ca	37	18	51800299	51800299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	POLI	NM_007195	exon3	c.T245C	p.V82A	.	.	85	4	123	0	.	229
POLQ	10721	bcgsc.ca	37	3	121190862	121190862	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	POLQ	NM_199420	exon22	c.T6693C	p.P2231P	.	.	87	4	70	0	.	664
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42599725	42599725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	POU2F2	NM_001207025	exon10	c.G926A	p.R309H	.	.	77	11	88	0	.	227
PPIL4	85313	bcgsc.ca	37	6	149842251	149842251	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PPIL4	NM_139126	exon10	c.A927G	p.R309R	.	.	187	6	189	0	.	90
PPP1R18	170954	bcgsc.ca	37	6	30652836	30652836	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001134870	exon2	c.A960G	p.E320E	.	.	210	7	208	0	.	.
PRELID1	27166	bcgsc.ca	37	5	176731636	176731636	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRELID1	NM_013237	exon2	c.T103C	p.L35L	.	.	84	4	76	0	.	90
PRKCZ	5590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2103755	2103755	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKCZ	NM_002744	exon13	c.G1213T	p.G405C	.	.	104	25	124	0	.	1465
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu	37	19	47214295	47214320	+	Frame_Shift_Del	DEL	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCTGTAGGCGGAAAATAGGGGTGGAT	GCTGTAGGCGGAAAATAGGGGTGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKD2	NM_016457	exon3	c.380_380del	p.127_127del	.	.	111	14	189	0	.	759
PRKDC	5591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48856412	48856412	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRKDC	NM_001081640	exon10	c.808+1G>T	.	.	.	133	40	136	0	.	1515
PRSS55	203074	broad.mit.edu;bcgsc.ca	37	8	10388924	10388924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PRSS55	NM_001197020	exon3	c.A467G	p.D156G	.	.	134	5	113	1	.	91
PSMA4	5685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78837279	78837279	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PSMA4	NM_001102667	exon6	c.A356T	p.Q119L	.	.	73	23	93	0	.	90
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	114341085	114341086	+	Nonsense_Mutation	INS	-	-	TT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PTGR1	NM_001146108	exon7	c.642_643insAA	p.Y214_F215delinsX	.	.	112	13	136	0	.	90
PTPN18	26469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131117002	131117002	+	Silent	SNP	G	G	T	rs138461234	byfrequency;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PTPN18	NM_014369	exon4	c.G312T	p.T104T	.	.	98	30	119	0	G|0.996;C|0.004	229
PVRL3	25945	bcgsc.ca	37	3	110852899	110852899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PVRL3	NM_015480	exon6	c.A1487G	p.N496S	.	.	152	5	142	0	.	92
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52323847	52323847	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	PXDNL	NM_144651	exon16	c.T2025C	p.R675R	.	.	227	71	179	0	.	70
R3HDM1	23518	bcgsc.ca	37	2	136396525	136396525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	R3HDM1	NM_015361	exon14	c.A1052G	p.E351G	.	.	131	7	124	0	.	91
RAB40C	57799	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	16	677600	677600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB40C	NM_021168	exon6	c.G824C	p.R275P	.	.	81	24	90	0	.	227
RAB4A	5867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229431599	229431599	+	Missense_Mutation	SNP	G	G	T	rs141754859	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RAB4A	NM_004578	exon4	c.G232T	p.V78L	.	.	125	32	110	0	G|1.000;A|0.000	182
RABL6	55684	bcgsc.ca	37	9	139733408	139733408	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001173988	exon11	c.A1331G	p.D444G	.	.	124	5	117	0	.	.
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170346578	170346578	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RANBP17	NM_022897	exon11	c.T1235G	p.F412C	.	.	193	73	190	0	.	524
RASAL2	9462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178269226	178269226	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RASAL2	NM_170692	exon3	c.T430C	p.Y144H	.	.	86	44	74	0	.	155
RBM19	9904	bcgsc.ca	37	12	114387907	114387907	+	Silent	SNP	T	T	C	rs144902333	byfrequency;alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RBM19	NM_001146699	exon9	c.A1053G	p.K351K	.	.	70	4	82	0	T|0.998;A|0.002	95
RCC1	1104	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28861881	28861881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RCC1	NM_001048194	exon7	c.G743C	p.R248P	.	.	123	43	105	1	.	228
RECQL4	9401	broad.mit.edu	37	8	145742030	145742030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RECQL4	NM_004260	exon5	c.A473G	p.E158G	.	.	150	7	132	0	.	1083
RIMS2	9699	bcgsc.ca	37	8	105261807	105261807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RIMS2	NM_001100117	exon22	c.A3682G	p.T1228A	.	.	69	4	64	0	.	279
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104898096	104898096	+	Silent	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	RIMS2,colon,carcinoma,0	RIMS2	NM_001100117	exon4	c.T1269G	p.S423S	.	.	67	28	81	0	.	279
RIPK4	54101	bcgsc.ca	37	21	43169350	43169350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RIPK4	NM_020639	exon4	c.A637G	p.I213V	.	.	65	4	54	0	.	947
RNF146	81847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127608258	127608258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RNF146	NM_001242850	exon3	c.A500C	p.K167T	.	.	90	23	77	0	.	226
RPL35	11224	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	127622525	127622525	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPL35	NM_007209	exon3	c.C159T	p.S53S	.	.	112	36	116	1	.	91
RPP40	10799	broad.mit.edu;bcgsc.ca	37	6	4996528	4996528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPP40	NM_006638	exon6	c.G686A	p.G229E	.	.	97	4	101	0	.	90
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150437008	150437008	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPRD2	NM_015203	exon10	c.A1417G	p.S473G	.	.	57	21	34	0	.	23
RPS10	6204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	34389539	34389539	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RPS10	NM_001203245	exon4	c.A368G	p.D123G	.	.	113	34	104	0	.	90
RRS1	23212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67341483	67341483	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RRS1	NM_015169	exon1	c.G117A	p.L39L	.	.	202	77	161	0	.	90
RXFP2	122042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32371491	32371491	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	RXFP2	NM_130806	exon17	c.A1940C	p.D647A	.	.	229	94	186	0	.	90
SAMD3	154075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130536349	130536349	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SAMD3	NM_001017373	exon3	c.A70G	p.R24G	.	.	127	40	100	0	.	91
SART3	9733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	108932816	108932816	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SART3	NM_014706	exon7	c.T956G	p.F319C	.	.	162	63	145	0	.	91
SCAMP4	113178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1924232	1924242	+	Frame_Shift_Del	DEL	GCCCGAGTACC	GCCCGAGTACC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GCCCGAGTACC	GCCCGAGTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCAMP4	NM_079834	exon7	c.639_649del	p.213_217del	.	.	37	13	77	0	.	68
SCN9A	6335	bcgsc.ca	37	2	167142891	167142891	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCN9A	NM_002977	exon11	c.A1557G	p.E519E	.	.	217	6	239	0	.	181
SCYL1	57410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65293085	65293085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL1	NM_020680	exon2	c.A152C	p.K51T	.	.	122	38	109	0	.	333
SCYL3	57147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169847817	169847817	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SCYL3	NM_020423	exon3	c.G309T	p.G103G	.	.	391	208	260	0	.	361
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	118827051	118827051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SEPT6	NM_145802	exon1	c.A18G	p.I6M	.	.	122	77	185	0	.	969
SERPINB7	8710	bcgsc.ca	37	18	61471590	61471590	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SERPINB7	NM_001261830	exon8	c.A864G	p.K288K	.	.	63	5	65	0	.	226
SH2B1	25970	bcgsc.ca	37	16	28877724	28877724	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SH2B1	NM_001145796	exon2	c.A309G	p.P103P	.	.	79	4	78	0	.	92
SH2B3	10019	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111884570	111884570	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SH2B3	NM_005475	exon3	c.A746C	p.K249T	.	.	125	48	128	1	.	91
SIM2	6493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38117328	38117328	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SIM2	NM_005069	exon10	c.C1467T	p.C489C	.	.	128	38	116	0	.	90
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	54619962	54619962	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SKIV2L2	NM_015360	exon3	c.T275A	p.L92X	.	.	115	51	85	0	.	92
SLC16A2	6567	bcgsc.ca	37	X	73641310	73641310	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC16A2	.	.	.	.	.	.	66	5	37	0	.	194
SLC22A11	55867	hgsc.bcm.edu	37	11	64323714	64323715	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC22A11	NM_018484	exon1	c.243_244insC	p.G81fs	.	.	95	9	76	0	.	91
SLC22A25	387601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62931493	62931493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC22A25	NM_199352	exon9	c.G1447T	p.A483S	.	.	286	97	295	0	.	72
SLC25A11	8402	bcgsc.ca	37	17	4842501	4842501	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC25A11	NM_003562	exon2	c.A102G	p.G34G	.	.	72	4	69	0	.	90
SLC26A7	115111	bcgsc.ca	37	8	92364099	92364099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC26A7	NM_134266	exon10	c.T1202C	p.L401P	.	.	119	5	71	0	.	92
SLC2A2	6514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	170723139	170723139	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC2A2	NM_000340	exon7	c.T898C	p.Y300H	.	.	198	65	215	0	.	515
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47781491	47781491	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC35B1	NM_005827	exon6	c.A626C	p.N209T	.	.	395	127	279	0	.	90
SLC44A4	80736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31833747	31833747	+	Missense_Mutation	SNP	C	C	T	rs149591801		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SLC44A4	NM_025257	exon14	c.G1390A	p.V464I	.	.	122	48	113	0	C|1.000;T|0.000	156
SLC9B2	133308	bcgsc.ca	37	4	103964510	103964510	+	Silent	SNP	T	T	C	rs115461318	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_178833	exon9	c.A1089G	p.G363G	.	.	82	4	64	0	T|0.999;A|0.001	.
SLC9C1	285335	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	111939985	111939985	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_183061	exon14	c.A1660T	p.K554X	.	.	145	42	164	0	.	.
SMARCA2	6595	hgsc.bcm.edu	37	9	2039779	2039779	+	Silent	SNP	G	G	A	rs62639301	bycluster;byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SMARCA2	NM_139045	exon4	c.G669A	p.Q223Q	.	.	100	5	104	0	G|0.993;A|0.007	653
SMNDC1	10285	bcgsc.ca	37	10	112054011	112054011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SMNDC1	NM_005871	exon6	c.T614C	p.V205A	.	.	87	4	104	0	.	91
SNCA	6622	broad.mit.edu;bcgsc.ca	37	4	90743513	90743513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SNCA	NM_000345	exon4	c.A190G	p.T64A	.	.	198	6	151	0	.	90
SND1	27044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	127338946	127338946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SND1	NM_014390	exon4	c.A367G	p.I123V	.	.	100	5	85	0	.	92
SNTA1	6640	broad.mit.edu	37	20	31996546	31996546	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SNTA1	NM_003098	exon7	c.T1386C	p.S462S	.	.	154	4	128	1	.	91
SP3	6670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	174820648	174820648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SP3	NM_003111	exon4	c.A592C	p.N198H	.	.	193	63	208	0	.	227
SPATA31D5P	347127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84531233	84531233	+	RNA	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	29	15	35	0	.	.
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24718668	24718668	+	Missense_Mutation	SNP	A	A	G	rs200752862	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPECC1L	NM_001145468	exon4	c.A1720G	p.I574V	.	.	79	27	71	0	.	92
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24718674	24718674	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPECC1L	NM_001145468	exon4	c.A1726C	p.M576L	.	.	82	27	66	0	.	92
SPG11	80208	bcgsc.ca	37	15	44914952	44914952	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPG11	NM_025137	exon12	c.A2290G	p.T764A	.	.	104	4	99	1	.	95
SPTLC2	9517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	78021746	78021746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SPTLC2	NM_004863	exon8	c.G1073A	p.G358D	.	.	127	46	164	0	.	92
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45812829	45812829	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SRBD1	NM_018079	exon5	c.A733C	p.I245L	.	.	104	25	134	0	.	90
SRSF7	6432	broad.mit.edu	37	2	38976763	38976763	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SRSF7	NM_001195446	exon3	c.T294C	p.R98R	.	.	356	7	406	2	.	226
SSBP2	23635	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80762867	80762867	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SSBP2	NM_001256732	exon9	c.A588T	p.S196S	.	.	204	74	250	1	.	223
ST5	6764	bcgsc.ca	37	11	8720511	8720511	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ST5	NM_213618	exon16	c.T2909C	p.V970A	.	.	78	4	72	0	.	227
STAG2	10735	bcgsc.ca	37	X	123205063	123205063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STAG2	NM_001042749	exon25	c.A2423G	p.D808G	.	.	76	4	84	0	.	134
STON1	11037	hgsc.bcm.edu;bcgsc.ca	37	2	48818838	48818838	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.A1977T	p.S659S	.	.	216	36	258	0	.	91
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48818835	48818835	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.1974delA	p.G658fs	.	.	217	36	256	0	.	91
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48818840	48818841	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STON1	NM_001198595	exon4	c.1979_1980del	p.660_660del	.	.	216	35	255	0	.	91
STRN	6801	bcgsc.ca	37	2	37152329	37152329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STRN	NM_003162	exon2	c.G257A	p.G86E	.	.	269	18	317	9	.	91
STX7	8417	bcgsc.ca	37	6	132791739	132791739	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	STX7	NM_003569	exon6	c.A414G	p.K138K	.	.	67	4	50	0	.	90
SVEP1	79987	broad.mit.edu	37	9	113233781	113233781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SVEP1	NM_153366	exon16	c.A2861G	p.K954R	.	.	409	7	378	1	.	75
SYNE2	23224	bcgsc.ca	37	14	64491973	64491973	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	SYNE2	NM_182914	exon41	c.T6086C	p.L2029P	.	.	169	5	162	0	.	164
TAF1C	9013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84216853	84216853	+	Silent	SNP	C	C	T	rs187518651		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAF1C	NM_001243156	exon5	c.G405A	p.A135A	.	.	67	26	62	0	C|0.999;T|0.000	91
TAF6L	10629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	62554224	62554224	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAF6L	NM_006473	exon11	c.G1325C	p.R442P	.	.	78	29	47	0	.	93
TAP1	6890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32821062	32821062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAP1	NM_000593	exon1	c.T532C	p.S178P	.	.	155	54	91	1	.	91
TAP1	6890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32821435	32821435	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TAP1	NM_000593	exon1	c.C159T	p.D53D	.	.	41	16	32	0	.	91
TBCK	93627	bcgsc.ca	37	4	107157548	107157548	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TBCK	NM_001163436	exon14	c.A1349G	p.K450R	.	.	58	4	55	0	.	336
TCF15	6939	hgsc.bcm.edu	37	20	590855	590855	+	Silent	SNP	G	G	A	rs45526442		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TCF15	NM_004609	exon1	c.C27T	p.V9V	.	.	10	6	4	0	G|0.950;A|0.050	90
TEAD2	8463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49845749	49845749	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TEAD2	NM_001256660	exon12	c.G1188C	p.Q396H	.	.	181	63	154	0	.	92
TENM3	55714	broad.mit.edu	37	4	183713603	183713603	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001080477	exon25	c.G5778A	p.T1926T	.	.	184	6	162	0	.	.
TET3	200424	bcgsc.ca	37	2	74328700	74328700	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_144993	exon9	c.T4380C	p.A1460A	.	.	187	6	165	1	.	.
THAP2	83591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72070666	72070666	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	THAP2	NM_031435	exon3	c.C465T	p.C155C	.	.	170	55	166	1	.	91
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30011153	30011153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TJP1	NM_003257	exon21	c.A3193G	p.S1065G	.	.	355	103	424	0	.	95
TLE1	7088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	84300807	84300807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TLE1	NM_005077	exon3	c.A130G	p.K44E	.	.	188	62	209	0	.	92
TMEM138	51524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61131920	61131920	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM138	NM_016464	exon2	c.T58C	p.Y20H	.	.	152	50	132	0	.	90
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41941283	41941289	+	Frame_Shift_Del	DEL	CATCAAA	CATCAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CATCAAA	CATCAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.211_217del	p.71_73del	.	.	234	17	274	0	.	91
TMEM33	55161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	41941291	41941298	+	Frame_Shift_Del	DEL	ATTACCAC	ATTACCAC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	ATTACCAC	ATTACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TMEM33	NM_018126	exon3	c.219_226del	p.73_76del	.	.	221	17	276	0	.	91
TNFSF13B	10673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	108922722	108922722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TNFSF13B	NM_006573	exon2	c.C374T	p.S125F	.	.	93	33	97	0	.	659
TNNI2	7136	broad.mit.edu;mdanderson.org	37	11	1860927	1860927	+	Translation_Start_Site	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TNNI2	.	.	.	.	.	.	94	27	131	0	.	90
TOB1	10140	bcgsc.ca	37	17	48940347	48940347	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TOB1	NM_005749	exon2	c.T1032C	p.A344A	.	.	85	4	50	0	.	226
TOMM70A	9868	bcgsc.ca	37	3	100105782	100105782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TOMM70A	NM_014820	exon2	c.A365G	p.N122S	.	.	224	6	231	0	.	91
TOX4	9878	bcgsc.ca	37	14	21956750	21956750	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TOX4	NM_014828	exon4	c.A320G	p.D107G	.	.	200	6	206	0	.	91
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186295352	186295352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TPR	NM_003292	exon41	c.G5905A	p.E1969K	.	.	140	73	135	0	.	228
TRAM1L1	133022	bcgsc.ca	37	4	118006013	118006013	+	Silent	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TRAM1L1	NM_152402	exon1	c.T537C	p.A179A	.	.	210	6	182	0	.	90
TREML1	340205	bcgsc.ca	37	6	41118584	41118584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TREML1	NM_178174	exon4	c.T541C	p.F181L	.	.	141	5	161	0	.	153
TRIM71	131405	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32932714	32932714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TRIM71	NM_001039111	exon4	c.A2018G	p.D673G	.	.	81	31	74	2	.	92
TRMT10B	158234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37776352	37776352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_144964	exon8	c.G794C	p.R265T	.	.	203	76	213	0	.	.
TSHZ2	128553	broad.mit.edu;bcgsc.ca	37	20	51872734	51872734	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TSHZ2	NM_173485	exon2	c.A2737G	p.T913A	.	.	104	6	99	0	.	232
TTC17	55761	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	43411274	43411274	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TTC17	NM_018259	exon3	c.A322G	p.N108D	.	.	220	68	199	1	.	95
TTC7A	57217	bcgsc.ca	37	2	47277163	47277163	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TTC7A	NM_020458	exon17	c.T1995C	p.P665P	.	.	85	4	94	0	.	136
TUBAL3	79861	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5437356	5437356	+	Silent	SNP	G	G	A	rs141292428	byfrequency	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	TUBAL3	NM_024803	exon3	c.C330T	p.Y110Y	.	.	112	31	134	0	G|0.998;A|0.002	91
TUBBP5	643224	broad.mit.edu	37	9	141070069	141070069	+	RNA	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	.	.	.	86	3	81	0	.	.
TVP23A	780776	bcgsc.ca	37	16	10912343	10912343	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_001079512	exon1	c.A8G	p.Q3R	.	.	68	4	67	0	.	.
TVP23C	201158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15406305	15406305	+	Missense_Mutation	SNP	T	T	A	rs141163711	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_145301	exon6	c.A704T	p.Q235L	.	.	132	36	148	0	T|1.000;C|0.000	.
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	99853763	99853763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBAC2	NM_177967	exon1	c.G98A	p.G33E	.	.	501	166	503	0	.	91
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19482082	19482082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UBR4	NM_020765	exon43	c.C6153A	p.F2051L	.	.	244	68	223	0	.	612
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234581246	234581246	+	Silent	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T666A	p.R222R	.	.	341	117	414	0	.	91
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234581248	234581248	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UGT1A9	NM_021027	exon1	c.T668A	p.F223Y	.	.	336	113	411	0	.	91
UNC13B	10497	broad.mit.edu	37	9	35389967	35389967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UNC13B	NM_006377	exon24	c.A2972G	p.N991S	.	.	158	4	185	0	.	157
UNC45B	146862	bcgsc.ca	37	17	33486412	33486412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UNC45B	NM_001267052	exon8	c.A827G	p.K276R	.	.	82	5	84	1	.	157
UNC79	57578	bcgsc.ca	37	14	94069738	94069738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_020818	exon26	c.T3197C	p.L1066P	.	.	165	5	141	0	.	.
UPK3B	80761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	76141019	76141019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	UPK3B	NM_030570	exon2	c.C446T	p.A149V	.	.	416	109	415	0	.	90
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229779359	229779359	+	Silent	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	URB2	NM_014777	exon5	c.G3714A	p.G1238G	.	.	253	127	208	0	.	174
USP28	57646	bcgsc.ca	37	11	113705004	113705004	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	USP28	NM_020886	exon6	c.A588G	p.P196P	.	.	72	4	82	0	.	706
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	108322079	108322079	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VAV3	NM_006113	exon3	c.T357A	p.P119P	.	.	112	39	83	0	.	1339
VCL	7414	bcgsc.ca	37	10	75860818	75860818	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VCL	NM_003373	exon14	c.A1985G	p.Q662R	.	.	107	5	90	0	.	93
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177608449	177608449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	VEGFC,NS,carcinoma,-1	VEGFC	NM_005429	exon6	c.C1037G	p.T346S	.	.	230	89	257	0	.	710
VEPH1	79674	bcgsc.ca	37	3	157031445	157031445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VEPH1	NM_001167912	exon11	c.A1975G	p.T659A	.	.	65	4	54	0	.	155
VPS51	738	bcgsc.ca	37	11	64875424	64875424	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_013265	exon4	c.T655C	p.F219L	.	.	63	4	75	0	.	.
VPS51	738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64877952	64877952	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	NM_013265	exon8	c.1879-2A>G	.	.	.	148	59	149	0	.	.
VPS53	55275	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	531471	531479	+	Frame_Shift_Del	DEL	TCTAGTAAA	TCTAGTAAA	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TCTAGTAAA	TCTAGTAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VPS53	NM_001128159	exon9	c.688_688del	p.230_230del	.	.	72	20	103	0	.	90
VPS54	51542	bcgsc.ca	37	2	64126630	64126630	+	Missense_Mutation	SNP	A	A	G	rs17854180	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VPS54	NM_016516	exon21	c.T2711C	p.L904P	.	.	70	4	77	0	.	90
VWDE	221806	bcgsc.ca	37	7	12414761	12414761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	VWDE	NM_001135924	exon8	c.A1117G	p.T373A	.	.	152	6	125	0	.	68
WBSCR22	114049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73105342	73105342	+	Silent	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WBSCR22	NM_001202560	exon6	c.C459A	p.L153L	.	.	329	117	361	0	.	90
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43638463	43638463	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WDR65	NM_001195831	exon2	c.T39C	p.G13G	.	.	170	27	158	0	.	91
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	10094158	10094158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	WWC3	NM_015691	exon15	c.A1918G	p.I640V	.	.	121	79	112	0	.	134
ZBTB16	7704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114113007	114113007	+	Silent	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZBTB16	NM_006006	exon5	c.C1572T	p.N524N	.	.	124	49	126	0	.	659
ZBTB40	9923	bcgsc.ca	37	1	22848934	22848934	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZBTB40	NM_001083621	exon17	c.T3276C	p.V1092V	.	.	146	5	161	0	.	91
ZBTB9	221504	broad.mit.edu	37	6	33423833	33423833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZBTB9	NM_152735	exon2	c.A956G	p.E319G	.	.	36	3	27	0	.	90
ZC3H8	84524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	112989510	112989510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZC3H8	NM_032494	exon7	c.A748C	p.K250Q	.	.	74	24	63	0	.	226
ZCCHC24	219654	bcgsc.ca	37	10	81146135	81146135	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZCCHC24	NM_153367	exon4	c.A692G	p.K231R	.	.	143	5	109	0	.	153
ZFP37	7539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115805892	115805892	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP37	NM_003408	exon4	c.C1006G	p.L336V	.	.	128	46	177	0	.	92
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36884388	36884388	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFP82	NM_133466	exon5	c.A854C	p.K285T	.	.	121	64	118	0	.	91
ZFYVE9	9372	broad.mit.edu;bcgsc.ca	37	1	52704848	52704848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZFYVE9	NM_007323	exon4	c.C1759A	p.L587I	.	.	147	5	129	0	.	230
ZNF215	7762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6977459	6977459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF215	NM_013250	exon7	c.C1251A	p.N417K	.	.	43	14	38	0	.	514
ZNF22	7570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	45499035	45499035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF22	NM_006963	exon2	c.C219A	p.H73Q	.	.	43	12	47	0	.	154
ZNF235	9310	bcgsc.ca	37	19	44802974	44802974	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF235	NM_004234	exon4	c.A225G	p.R75R	.	.	144	6	124	0	.	137
ZNF335	63925	broad.mit.edu	37	20	44596191	44596191	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF335	NM_022095	exon6	c.A897G	p.G299G	.	.	375	9	445	2	.	94
ZNF34	80778	broad.mit.edu	37	8	146002955	146002955	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF34	NM_030580	exon5	c.A231G	p.G77G	.	.	71	4	107	0	.	90
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37734483	37734484	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF383	NM_152604	exon5	c.1345_1346del	p.449_449del	.	.	66	20	79	0	.	92
ZNF397	84307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	32826113	32826113	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF397	NM_001135178	exon4	c.C1444T	p.Q482X	.	.	169	64	172	0	.	90
ZNF428	126299	bcgsc.ca	37	19	44112156	44112156	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF428	NM_182498	exon3	c.A180G	p.E60E	.	.	126	6	104	0	.	90
ZNF432	9668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52538392	52538392	+	Silent	SNP	A	A	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF432	NM_014650	exon5	c.T540A	p.S180S	.	.	100	30	81	0	.	154
ZNF443	10224	broad.mit.edu	37	19	12542542	12542542	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF443	NM_005815	exon4	c.A444G	p.K148K	.	.	415	7	411	3	.	91
ZNF454	285676	bcgsc.ca	37	5	178392048	178392048	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF454	NM_001178089	exon5	c.A643G	p.R215G	.	.	67	4	41	0	.	93
ZNF560	147741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9578276	9578276	+	Silent	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF560	NM_152476	exon10	c.A1347G	p.G449G	.	.	131	56	146	0	.	158
ZNF594	84622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5085970	5085970	+	Missense_Mutation	SNP	G	G	T	rs181984106	alternate_allele	TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF594	NM_032530	exon2	c.C1582A	p.R528S	.	.	160	61	166	0	G|0.999;A|0.001	71
ZNF618	114991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116770657	116770657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF618	NM_133374	exon7	c.C578T	p.A193V	.	.	112	34	123	0	.	22
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71577282	71577282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF638	NM_014497	exon2	c.G1198A	p.D400N	.	.	82	6	58	0	.	94
ZNF652	22834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47390068	47390068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF652	NM_001145365	exon3	c.A1040G	p.H347R	.	.	121	32	80	0	.	91
ZNF675	171392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	23837293	23837293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF675	NM_138330	exon4	c.A442C	p.K148Q	.	.	119	6	97	0	.	228
ZNF678	339500	bcgsc.ca	37	1	227843075	227843075	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF678	NM_178549	exon4	c.A1289G	p.K430R	.	.	75	4	42	0	.	91
ZNF703	80139	bcgsc.ca	37	8	37554708	37554708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZNF703	NM_025069	exon2	c.T289C	p.S97P	.	.	109	5	117	0	.	523
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113619110	113619110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	ZW10	NM_004724	exon8	c.A958C	p.K320Q	.	.	196	67	167	0	.	228
RAD9A	5883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67163617	67163618	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	p.NL235KV	.	.	.	.	.	.	.	
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	93154522	93154523	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A3CK-01A-11D-A20W-10	TCGA-G3-A3CK-10A-01D-A20W-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1127b561-ea40-4d5e-95df-daa0a5ebc1e4	b9244ba4-a36a-415f-8975-7e933dd7d8a4	.	.	.	.	.	p.P962S	.	.	.	.	.	.	.	
