Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57215517	57215517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	AASDH	NM_181806	exon11	c.C2400A	p.Y800X	.	.	123	50	152	0	.	94
ABI3	51225	broad.mit.edu	37	17	47299493	47299493	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ABI3	NM_016428	exon7	c.A843T	p.P281P	.	.	113	5	135	1	.	90
ADNP	23394	broad.mit.edu	37	20	49509393	49509393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ADNP	NM_015339	exon5	c.G1858A	p.G620R	.	.	131	6	139	0	.	92
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu	37	2	73680580	73680580	+	Missense_Mutation	SNP	C	C	T	rs147001219	by1000genomes	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ALMS1	NM_015120	exon8	c.C6923T	p.T2308M	.	.	86	4	74	0	C|0.999;T|0.000	142
ANXA6	309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150483246	150483246	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ANXA6	NM_001155	exon25	c.1847delG	p.G616fs	.	.	53	22	86	0	.	22
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49719195	49719195	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	APEH	NM_001640	exon16	c.C1479T	p.S493S	.	.	166	21	187	0	.	91
ARSA	410	bcgsc.ca	37	22	51064039	51064039	+	Missense_Mutation	SNP	G	G	C	rs743616	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ARSA	NM_001085426	exon8	c.C1178G	p.T393S	.	.	70	4	184	0	G|0.545;C|0.455	92
ARV1	64801	broad.mit.edu	37	1	231114907	231114907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ARV1	NM_022786	exon1	c.T56G	p.V19G	.	.	134	30	77	12	.	154
ATAD3B	83858	ucsc.edu	37	1	1431060	1431060	+	Missense_Mutation	SNP	T	T	C	rs9792997		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ATAD3B	NM_031921	exon16	c.T1810C	p.Y604H	.	.	54	9	107	1	.	44
C11orf93	120376	bcgsc.ca	37	11	111179054	111179054	+	Silent	SNP	A	A	G	rs3087587	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_001271458	exon5	c.A648G	p.A216A	.	.	56	4	111	0	G|0.408;N|0.000	.
C19orf43	79002	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	12845284	12845284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	C19orf43	NM_024038	exon1	c.G188A	p.G63D	.	.	20	5	27	0	.	90
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	1263800	1263800	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CACNA1H	NM_021098	exon27	c.T4798C	p.Y1600H	.	.	22	5	35	0	.	67
CASR	846	broad.mit.edu	37	3	121981221	121981221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CASR	NM_001178065	exon4	c.G1339A	p.G447S	.	.	64	3	63	0	.	97
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65788038	65788038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CATSPER1	NM_053054	exon7	c.T1988C	p.L663P	.	.	120	42	105	0	.	92
CEP135	9662	hgsc.bcm.edu;broad.mit.edu	37	4	56835289	56835289	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CEP135	NM_025009	exon9	c.C1105T	p.Q369X	.	.	125	5	117	0	.	94
CERS4	79603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	8321909	8321909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_024552	exon9	c.G689A	p.R230H	.	.	212	17	215	0	.	.
CHRM2	1129	broad.mit.edu;bcgsc.ca	37	7	136700641	136700641	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CHRM2	NM_001006632	exon3	c.C1029T	p.T343T	.	.	189	7	192	0	.	94
CKB	1152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103986257	103986257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CKB	NM_001823	exon8	c.G1090A	p.E364K	.	.	43	16	47	0	.	115
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	56345032	56345032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CLOCK	NM_004898	exon6	c.A206T	p.D69V	.	.	104	43	102	0	.	515
CNGB3	54714	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87738774	87738774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CNGB3	NM_019098	exon3	c.A323G	p.K108R	.	.	133	38	103	3	.	93
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180815590	180815590	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CWC22	NM_020943	exon18	c.C1881T	p.A627A	.	.	32	18	48	0	.	90
CYYR1	116159	bcgsc.ca	37	21	27852724	27852724	+	Silent	SNP	A	A	G	rs966410	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	CYYR1	NM_052954	exon3	c.T201C	p.V67V	.	.	50	4	79	0	A|0.549;G|0.451	90
DDIT4L	115265	bcgsc.ca	37	4	101108877	101108877	+	Missense_Mutation	SNP	T	T	C	rs201713115		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DDIT4L	NM_145244	exon3	c.A539G	p.K180R	.	.	89	4	152	0	.	91
DEK	7913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18249918	18249918	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DEK	NM_003472	exon7	c.G726A	p.E242E	.	.	111	8	58	0	.	658
DTNA	1837	hgsc.bcm.edu;bcgsc.ca	37	18	32418068	32418068	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	DTNA	NM_001390	exon11	c.1105delA	p.K369fs	.	.	93	25	114	0	.	153
EPHA2	1969	bcgsc.ca	37	1	16451767	16451767	+	Silent	SNP	G	G	A	rs3754334	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	EPHA2	NM_004431	exon17	c.C2874T	p.I958I	.	.	115	6	224	1	G|0.777;A|0.223	1419
FAM102A	399665	bcgsc.ca	37	9	130710387	130710387	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	FAM102A	NM_001035254	exon6	c.C579A	p.S193S	.	.	51	4	67	0	.	91
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	FRG1	NM_004477	exon6	c.G506A	p.S169N	.	.	708	19	813	13	G|0.500;A|0.500	90
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	42116418	42116418	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GLI3	NM_000168	exon4	c.C406A	p.P136T	.	.	175	33	161	0	.	1149
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	54756722	54756722	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	GPR84	NM_020370	exon2	c.G914A	p.R305K	.	.	135	9	154	0	.	523
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65680865	65680865	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	IGDCC4	NM_020962	exon16	c.A2767T	p.M923L	.	.	82	30	101	0	.	93
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133141974	133141974	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KCNQ3	NM_004519	exon15	c.G2154C	p.V718V	.	.	304	89	176	0	.	138
KHNYN	23351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24901509	24901509	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KHNYN	NM_015299	exon3	c.C1042A	p.H348N	.	.	150	8	174	0	.	93
KIF17	57576	ucsc.edu;bcgsc.ca	37	1	21042094	21042094	+	Silent	SNP	G	G	A	rs12046928	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KIF17	NM_020816	exon2	c.C270T	p.Y90Y	.	.	61	6	98	0	G|0.810;A|0.190	94
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	113	15	101	0	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	111	13	104	0	.	96
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	57	4	48	1	.	92
LATS1	9113	hgsc.bcm.edu	37	6	149997737	149997737	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	LATS1	NM_004690	exon6	c.G2730A	p.L910L	.	.	69	4	75	0	.	992
LRP12	29967	broad.mit.edu;bcgsc.ca	37	8	105502999	105502999	+	Missense_Mutation	SNP	G	G	A	rs138849088	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	LRP12	NM_013437	exon7	c.C2482T	p.R828C	.	.	393	26	281	1	G|1.000;A|0.000	90
LSP1P3	729862	ucsc.edu	37	5	28927036	28927036	+	RNA	SNP	A	A	G	rs434405	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	.	.	.	.	.	.	43	4	66	0	A|0.494;G|0.506	.
MAATS1	89876	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119425666	119425666	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_033364	exon2	c.T135C	p.F45F	.	.	90	28	121	1	.	.
MUC5B	727897	ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1272392	1272392	+	Missense_Mutation	SNP	C	C	T	rs190661408	by1000genomes	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_002458	exon31	c.C14282T	p.T4761M	.	.	491	234	576	3	C|0.999;T|0.000	.
MYH14	79784	hgsc.bcm.edu	37	19	50766674	50766674	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	MYH14	NM_001145809	exon22	c.C2691T	p.T897T	.	.	88	4	117	0	.	23
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	1998979	1998979	+	Silent	SNP	G	G	A	rs112978000	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	MYOM2	NM_003970	exon2	c.G99A	p.A33A	.	.	99	41	134	0	A|0.001;C|0.000;G|0.999	95
NAB2	4665	hgsc.bcm.edu	37	12	57484963	57484963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	NAB2	NM_005967	exon2	c.C139T	p.R47W	.	.	96	4	95	0	.	92
NBEAP1	606	bcgsc.ca	37	15	20886461	20886461	+	RNA	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	.	.	.	.	.	.	33	9	36	0	.	.
NFX1	4799	broad.mit.edu	37	9	33295194	33295194	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	NFX1	NM_147134	exon2	c.C802T	p.R268X	.	.	127	7	146	1	.	91
NPHP4	261734	bcgsc.ca	37	1	5940243	5940243	+	Missense_Mutation	SNP	G	G	A	rs17472401	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	NPHP4	NM_015102	exon19	c.C2542T	p.R848W	.	.	105	6	207	2	G|0.986;A|0.014	515
OGN	4969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95152228	95152228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	OGN	NM_033014	exon5	c.C538G	p.L180V	.	.	29	14	56	0	.	492
OLIG2	10215	bcgsc.ca	37	21	34399401	34399401	+	Silent	SNP	A	A	G	rs762178	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	OLIG2	NM_005806	exon2	c.A231G	p.S77S	.	.	120	6	172	0	A|0.499;G|0.501	629
OTOGL	283310	ucsc.edu;bcgsc.ca	37	12	80665553	80665553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_173591	exon23	c.T2617G	p.S873A	.	.	297	130	327	3	.	.
PBRM1	55193	hgsc.bcm.edu	37	3	52643631	52643631	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PBRM1	NM_018313	exon17	c.C2265A	p.V755V	.	.	96	4	108	0	.	575
PCBP3	54039	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	47330914	47330914	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PCBP3	NM_001130141	exon7	c.C570A	p.C190X	.	.	76	29	93	1	.	227
PCDH11Y	83259	hgsc.bcm.edu;broad.mit.edu	37	Y	5605945	5605945	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_032973	exon5	c.A3985T	p.R1329X	.	.	242	220	241	1	.	.
PLEKHN1	84069	hgsc.bcm.edu	37	1	902177	902177	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PLEKHN1	NM_001160184	exon2	c.G177T	p.P59P	.	.	4	4	6	0	.	227
PLXNB2	23654	broad.mit.edu	37	22	50718110	50718110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PLXNB2	NM_012401	exon27	c.C4338A	p.Y1446X	.	.	92	3	179	1	.	211
POLR2C	5432	broad.mit.edu	37	16	57499917	57499917	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	POLR2C	NM_032940	exon3	c.C189T	p.F63F	.	.	90	5	184	0	.	90
PPM1E	22843	hgsc.bcm.edu	37	17	56833457	56833458	+	In_Frame_Ins	INS	-	-	GAACCCGAACCC	rs201186780	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PPM1E	NM_014906	exon1	c.99_100insGAACCCGAACCC	p.P33delinsPEPEP	.	.	40	9	53	0	-|0.416;GAACCC|0.584	291
PRKCQ	5588	broad.mit.edu;bcgsc.ca	37	10	6540456	6540456	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PRKCQ	NM_006257	exon5	c.C444T	p.A148A	.	.	226	8	232	0	.	1380
PTENP1	11191	broad.mit.edu	37	9	33676094	33676094	+	RNA	SNP	C	C	G	rs7853346	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	.	.	.	.	.	.	102	5	77	1	C|0.716;G|0.284	.
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87622910	87622910	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPN13	NM_006264	exon7	c.G1151T	p.R384I	.	.	64	8	119	1	.	230
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	40730794	40730795	+	Frame_Shift_Ins	INS	-	-	GA	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	PTPRT	NM_133170	exon27	c.3741_3742insTC	p.S1247fs	.	.	138	62	173	0	.	664
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48953741	48953742	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	RB1	NM_000321	exon14	c.1344_1345insG	p.L448fs	.	.	25	19	91	0	.	3784
RNF40	9810	broad.mit.edu	37	16	30779756	30779756	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	RNF40	NM_014771	exon13	c.C1884T	p.A628A	.	.	76	3	77	1	.	226
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54624616	54624616	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SKIV2L2	NM_015360	exon5	c.A492C	p.S164S	.	.	66	27	76	0	.	92
SLC22A4	6583	bcgsc.ca	37	5	131670546	131670546	+	Silent	SNP	C	C	G	rs272879	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC22A4	NM_003059	exon7	c.C1182G	p.T394T	.	.	155	8	173	1	C|0.424;G|0.576	90
SLC25A37	51312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23429092	23429092	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC25A37	NM_016612	exon4	c.C741T	p.L247L	.	.	33	16	39	0	.	90
SLC38A1	81539	broad.mit.edu;bcgsc.ca	37	12	46596826	46596826	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SLC38A1	NM_030674	exon12	c.C869A	p.P290Q	.	.	173	6	191	0	.	518
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2203672	2203672	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	SMG6	NM_017575	exon2	c.T375C	p.A125A	.	.	17	15	30	0	.	228
SP9	100131390	broad.mit.edu	37	2	175202128	175202128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_001145250	exon2	c.G1315A	p.E439K	.	.	117	5	135	0	.	.
STC1	6781	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	23709890	23709890	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	STC1	NM_003155	exon2	c.G126T	p.V42V	.	.	115	44	127	1	.	94
TAS2R3	50831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141464093	141464093	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TAS2R3	NM_016943	exon1	c.C135G	p.D45E	.	.	148	6	172	0	.	90
TCHH	7062	bcgsc.ca	37	1	152081119	152081119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TCHH	NM_007113	exon3	c.A4574G	p.H1525R	.	.	121	17	70	1	.	72
TCHH	7062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152081138	152081138	+	Missense_Mutation	SNP	C	C	G	rs189687085	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TCHH	NM_007113	exon3	c.G4555C	p.E1519Q	.	.	120	24	73	1	C|0.999;T|0.000	72
TDO2	6999	ucsc.edu;bcgsc.ca	37	4	156826233	156826233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TDO2	NM_005651	exon3	c.G156T	p.L52F	.	.	42	4	100	0	.	514
THSD7B	80731	bcgsc.ca	37	2	138420996	138420996	+	Missense_Mutation	SNP	A	A	G	rs10206850	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	THSD7B	.	.	.	.	.	.	78	4	115	0	A|0.415;G|0.585	75
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19245614	19245614	+	Missense_Mutation	SNP	C	C	G	rs143085909	alternate_allele	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TMEM161A	NM_001256766	exon2	c.G86C	p.R29P	.	.	56	27	56	0	C|1.000;A|0.000	154
TMTC4	84899	broad.mit.edu	37	13	101264705	101264705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TMTC4	NM_032813	exon17	c.C2011T	p.H671Y	.	.	125	3	224	0	.	155
TNXB	7148	broad.mit.edu	37	6	32065893	32065893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TNXB	NM_019105	exon2	c.C83T	p.S28L	.	.	71	3	62	0	.	90
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30365347	30365347	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TPX2	NM_012112	exon9	c.G788T	p.R263L	.	.	153	68	169	0	.	290
TTC5	91875	ucsc.edu	37	14	20760258	20760258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	TTC5	NM_138376	exon9	c.C1087T	p.P363S	.	.	44	4	72	1	.	91
UGT2B4	7363	hgsc.bcm.edu;bcgsc.ca	37	4	70361558	70361580	+	Frame_Shift_Del	DEL	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	-	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	CTGAAGTCCATTTCATAGACATC	CTGAAGTCCATTTCATAGACATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	UGT2B4	NM_021139	wholegene			.	.	58	5	73	0	.	92
USE1	55850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17330476	17330476	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	.	NM_018467	exon8	c.C634G	p.L212V	.	.	162	10	145	0	.	.
WDFY4	57705	broad.mit.edu;ucsc.edu	37	10	50108278	50108278	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WDFY4	NM_020945	exon46	c.G7450T	p.E2484X	.	.	136	63	167	1	.	22
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414248	32414248	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	WT1	NM_024424	exon8	c.T1303C	p.S435P	.	.	243	101	260	0	.	6891
XKR6	286046	broad.mit.edu	37	8	10755515	10755515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	XKR6	NM_173683	exon3	c.T1873G	p.Y625D	.	.	171	6	175	1	.	92
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100004329	100004329	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZCWPW1	NM_001258008	exon12	c.G1161A	p.E387E	.	.	85	8	83	0	.	90
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3335687	3335687	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZNF263	NM_005741	exon3	c.C575G	p.S192C	.	.	142	27	133	0	.	94
ZSWIM2	151112	bcgsc.ca	37	2	187698751	187698751	+	Silent	SNP	G	G	A	rs7559533	byfrequency	TCGA-G3-A5SI-01A-31D-A27I-10	TCGA-G3-A5SI-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	93545962-11bc-4519-a539-fc6651d02b31	f7b392f4-f65f-496b-abcc-8b81bb38e24f	.	ZSWIM2	NM_182521	exon6	c.C750T	p.T250T	.	.	64	5	63	0	G|0.785;A|0.215	93
