Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94577092	94577092	+	Silent	SNP	C	C	T	rs201725352		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ABCA4	NM_000350	exon3	c.G204A	p.P68P	.	.	89	44	170	0	C|0.999;T|0.001	162
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160189612	160189612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ACAT2	NM_005891	exon4	c.T442A	p.C148S	.	.	69	22	206	0	.	91
ACTR3B	57180	ucsc.edu	37	7	152497656	152497656	+	Silent	SNP	T	T	C	rs2462099		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ACTR3B	NM_020445	exon3	c.T141C	p.A47A	.	.	73	10	190	9	.	514
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91694746	91694746	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	AKAP9_ENST00000356239,NS,other,0	AKAP9	NM_005751	exon25	c.A6179G	p.K2060R	.	.	50	23	100	1	.	755
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74283835	74283835	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALB	NM_000477	exon12	c.T1459G	p.L487V	.	.	53	16	141	1	.	96
ALG12	79087	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	50303561	50303561	+	Silent	SNP	C	C	T	rs12167668	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ALG12	NM_024105	exon5	c.G645A	p.P215P	.	.	81	9	263	0	C|0.993;T|0.007	90
ANKRD17	26057	hgsc.bcm.edu;bcgsc.ca	37	4	74008384	74008384	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.T2058G	p.H686Q	.	.	57	20	93	0	.	234
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74008379	74008379	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ANKRD17	NM_198889	exon12	c.2063delC	p.A688fs	.	.	53	19	81	0	.	234
APBA3	9546	ucsc.edu	37	19	3760254	3760254	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APBA3	NM_004886	exon2	c.C9A	p.F3L	.	.	5	2	22	0	.	90
APCDD1	147495	broad.mit.edu;bcgsc.ca	37	18	10487784	10487784	+	Silent	SNP	C	C	A	rs116143459	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APCDD1	NM_153000	exon5	c.C1294A	p.R432R	.	.	53	5	156	1	C|0.993;A|0.007	90
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58571884	58571884	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	APPBP2	NM_006380	exon3	c.A322G	p.I108V	.	.	77	44	100	0	.	226
ARHGEF10L	55160	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17948399	17948422	+	In_Frame_Del	DEL	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	AAGGCAGCTACGTGGAGTCTCTGA	AAGGCAGCTACGTGGAGTCTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ARHGEF10L	NM_018125	exon11	c.983_1006del	p.328_336del	.	.	65	11	197	0	.	292
ARID5B	84159	ucsc.edu	37	10	63850678	63850678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ARID5B	NM_032199	exon10	c.G1456A	p.E486K	.	.	32	4	116	0	.	94
ASTN1	460	ucsc.edu	37	1	177001965	177001965	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ASTN1	NM_004319	exon3	c.G492A	p.L164L	.	.	20	5	54	0	.	319
ATAD2	29028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	124408568	124408568	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATAD2	NM_014109	exon1	c.G30A	p.L10L	.	.	88	5	72	0	.	92
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43667458	43667458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ATP5A1	NM_004046	exon7	c.A800T	p.D267V	.	.	90	21	256	0	.	90
BCLAF1	9774	hgsc.bcm.edu;bcgsc.ca	37	6	136599396	136599396	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BCLAF1	NM_014739	exon4	c.C623A	p.T208K	.	.	72	10	165	0	.	228
BLNK	29760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97956734	97956734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	BLNK	NM_013314	exon16	c.A1181G	p.Y394C	.	.	14	7	68	0	.	92
C1QTNF1	114897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77042704	77042704	+	Missense_Mutation	SNP	C	C	T	rs148895244		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	C1QTNF1	NM_030968	exon3	c.C223T	p.R75C	.	.	126	29	246	1	C|1.000;T|0.000	91
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181700363	181700363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CACNA1E	NM_001205293	exon19	c.C2293A	p.H765N	.	.	123	34	260	2	.	95
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	31682701	31682701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001257968	exon11	c.G1795A	p.V599I	.	.	82	30	184	0	.	.
CCDC138	165055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	109405347	109405347	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCDC138	NM_144978	exon3	c.C191A	p.S64X	.	.	54	14	140	0	.	90
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	103392315	103392315	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001146197	exon4	c.T10732A	p.W3578R	.	.	112	43	198	0	.	.
CCT6B	10693	hgsc.bcm.edu	37	17	33281570	33281599	+	In_Frame_Del	DEL	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	TTATCTTTGCAGCTTCAAATCCTTCAGCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CCT6B	NM_006584	exon4	c.356_385del	p.119_129del	.	.	46	9	117	0	.	91
CD163	9332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7640068	7640068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CD163	NM_203416	exon8	c.G1937T	p.W646L	.	.	149	58	334	1	.	98
CFHR2	3080	bcgsc.ca	37	1	196928188	196928188	+	Missense_Mutation	SNP	A	A	G	rs41310132	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CFHR2	NM_005666	exon5	c.A791G	p.Y264C	.	.	130	6	211	0	A|0.988;G|0.012	93
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072344	240072344	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CHRM3	NM_000740	exon5	c.G1593C	p.W531C	.	.	96	32	367	0	.	95
CLIP4	79745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29366660	29366660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CLIP4	NM_024692	exon7	c.A734G	p.K245R	.	.	146	41	371	0	.	91
CNTN5	53942	bcgsc.ca	37	11	100226883	100226883	+	Missense_Mutation	SNP	T	T	A	rs1216183	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CNTN5	NM_001243270	exon24	c.T3235A	p.S1079T	.	.	56	5	124	2	T|0.476;A|0.524	366
CPE	1363	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	166388853	166388853	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CPE	NM_001873	exon3	c.A518G	p.K173R	.	.	40	11	83	1	.	155
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	207872610	207872619	+	Frame_Shift_Del	DEL	GTGTGTGAAC	GTGTGTGAAC	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GTGTGTGAAC	GTGTGTGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CR1L	NM_175710	exon8	c.1219_1228del	p.407_410del	.	.	112	12	402	0	.	46
CREBRF	153222	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	172517412	172517412	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_153607	exon4	c.T230G	p.V77G	.	.	163	58	407	2	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268760	41268760	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CTNNB1	NM_001098209	exon7	c.A998T	p.Y333F	.	.	39	14	107	0	.	24361
CYP24A1	1591	mdanderson.org	37	20	52789969	52789969	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	CYP24A1	NM_000782	exon1	c.C150T	p.G50G	.	.	8	3	14	0	.	228
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	124535286	124535286	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DAB2IP	NM_032552	exon12	c.T2395G	p.S799A	.	.	32	11	41	0	.	91
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50450198	50450198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DCC	NM_005215	exon4	c.G819T	p.W273C	.	.	137	36	264	0	.	225
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31695402	31695402	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DDAH2	NM_013974	exon6	c.G659C	p.C220S	.	.	88	21	253	0	.	90
DHX36	170506	broad.mit.edu	37	3	154042052	154042052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DHX36	NM_020865	exon1	c.C154T	p.R52W	.	.	30	3	71	0	.	226
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	79577541	79577541	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DLG5	NM_004747	exon18	c.C3778G	p.R1260G	.	.	52	29	161	0	.	98
DNAH3	55567	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21049196	21049196	+	Missense_Mutation	SNP	C	C	A	rs141984585		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH3	NM_017539	exon34	c.G4837T	p.A1613S	.	.	179	65	443	0	C|0.998;A|0.002	167
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11573031	11573031	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DNAH9	NM_001372	exon17	c.C3273G	p.P1091P	.	.	32	20	139	0	.	168
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116497381	116497381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	DPP10	NM_001178034	exon9	c.T776C	p.M259T	.	.	197	52	414	0	.	142
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183995039	183995039	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ECE2	NM_014693	exon4	c.A617G	p.D206G	.	.	70	20	269	0	.	94
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36895340	36895340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELMO1	NM_014800	exon22	c.A2000G	p.D667G	.	.	135	38	312	0	.	96
ELTD1	64123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	79403627	79403627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ELTD1	NM_022159	exon6	c.G625A	p.V209I	.	.	80	33	153	1	.	24
EMX1	2016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73160942	73160942	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EMX1	NM_004097	exon3	c.G732A	p.R244R	.	.	56	17	161	0	.	90
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134920510	134920510	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EPHB1	NM_004441	exon12	c.T2325G	p.D775E	.	.	175	60	393	1	.	1492
EPHB6	2051	ucsc.edu	37	7	142565370	142565370	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	EPHB6	NM_004445	exon12	c.G1755A	p.L585L	.	.	40	4	107	0	.	1489
F5	2153	bcgsc.ca	37	1	169510348	169510348	+	Missense_Mutation	SNP	T	T	C	rs1800595	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	F5	NM_000130	exon13	c.A3980G	p.H1327R	.	.	214	8	395	5	T|0.953;C|0.047	157
FAM200B	285550	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	15689295	15689295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001145191	exon2	c.G695A	p.S232N	.	.	15	5	51	0	.	.
FLT1	2321	hgsc.bcm.edu	37	13	28963881	28963881	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	FLT1	NM_001159920	exon13	c.2021delG	p.S674fs	.	.	33	15	50	0	.	1406
FOSL1	8061	ucsc.edu;bcgsc.ca	37	11	65664346	65664346	+	Silent	SNP	T	T	C	rs637571	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	FOSL1	NM_005438	exon2	c.A231G	p.Q77Q	.	.	36	5	91	3	T|0.473;C|0.527	522
GARS	2617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30673470	30673470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GARS	NM_002047	exon17	c.G2214T	p.E738D	.	.	35	17	91	0	.	91
GBP1	2633	bcgsc.ca	37	1	89525903	89525903	+	Missense_Mutation	SNP	C	C	T	rs143075008		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GBP1	NM_002053	exon3	c.G295A	p.E99K	.	.	177	10	278	3	C|0.984;T|0.016	92
GCC1	79571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127222282	127222282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GCC1	NM_024523	exon2	c.A2114G	p.H705R	.	.	225	62	620	1	.	92
GLB1L2	89944	bcgsc.ca	37	11	134244123	134244123	+	Silent	SNP	C	C	G	rs3741097	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GLB1L2	NM_138342	exon17	c.C1680G	p.T560T	.	.	92	5	408	2	C|0.688;G|0.312	25
GOLGB1	2804	bcgsc.ca	37	3	121414952	121414952	+	Missense_Mutation	SNP	G	G	T	rs202183314	alternate_allele	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GOLGB1	NM_001256486	exon13	c.C4418A	p.P1473Q	.	.	44	4	104	0	G|0.999;A|0.001	161
GPR176	11245	bcgsc.ca	37	15	40099272	40099272	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPR176	NM_007223	exon2	c.C360T	p.V120V	.	.	54	4	102	0	.	519
GPRIN1	114787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176024063	176024063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN1	NM_052899	exon2	c.T2773C	p.Y925H	.	.	18	8	21	0	.	92
GPRIN3	285513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90171127	90171127	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GPRIN3	NM_198281	exon2	c.T135C	p.N45N	.	.	62	23	141	0	.	71
GRIPAP1	56850	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48834814	48834814	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GRIPAP1	NM_020137	exon22	c.C1964T	p.S655L	.	.	21	20	62	2	.	227
GRK4	2868	bcgsc.ca	37	4	3039150	3039150	+	Missense_Mutation	SNP	T	T	C	rs1801058	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	GRK4	NM_182982	exon14	c.T1457C	p.V486A	.	.	252	7	588	2	T|0.327;C|0.673	507
HHIP	64399	hgsc.bcm.edu	37	4	145568034	145568034	+	Silent	SNP	C	C	T	rs200359445		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HHIP	NM_022475	exon1	c.C207T	p.C69C	.	.	72	4	195	0	.	283
HIST1H3D	8351	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26197153	26197153	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HIST1H3D	NM_003530	exon2	c.A326G	p.N109S	.	.	137	40	386	2	.	90
HOXB5	3215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	46669637	46669637	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HOXB5	NM_002147	exon2	c.G744C	p.K248N	.	.	104	48	164	0	.	90
HS2ST1	9653	hgsc.bcm.edu;bcgsc.ca	37	1	87563544	87563544	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.A612C	p.E204D	.	.	121	17	258	0	.	90
HS2ST1	9653	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87563541	87563541	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	HS2ST1	NM_012262	exon5	c.609delA	p.A203fs	.	.	114	17	248	0	.	90
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75888748	75888748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	IQGAP2	NM_006633	exon9	c.A905G	p.N302S	.	.	165	49	336	0	.	96
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15559199	15559199	+	Silent	SNP	G	G	T	rs199977895		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ITGA8	NM_003638	exon30	c.C3150A	p.T1050T	.	.	42	18	65	0	G|0.999;T|0.001	230
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5153808	5153808	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KCNA5	NM_002234	exon1	c.C495T	p.F165F	.	.	60	30	109	0	.	715
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18368011	18368011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KIAA1683	NM_001145304	exon4	c.C4083A	p.H1361Q	.	.	39	13	115	0	.	92
KLF17	128209	broad.mit.edu	37	1	44595041	44595041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLF17	NM_173484	exon2	c.C98T	p.A33V	.	.	89	4	189	0	.	92
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	87741993	87741994	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHDC4	NM_017566	exon11	c.1526_1527del	p.509_509del	.	.	44	10	98	0	.	182
KLHL1	57626	broad.mit.edu;ucsc.edu	37	13	70549804	70549804	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHL1	NM_020866	exon2	c.C628T	p.Q210X	.	.	55	5	122	0	.	90
KLHL6	89857	hgsc.bcm.edu	37	3	183209884	183209884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KLHL6	NM_130446	exon7	c.G1697T	p.R566L	.	.	92	5	122	0	.	93
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39084785	39084785	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	KRT23	NM_015515	exon5	c.G711C	p.L237L	.	.	74	18	168	0	.	91
KRT39	390792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39118509	39118509	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.A901G	p.S301G	.	.	76	32	132	0	.	.
KRT39	390792	ucsc.edu;bcgsc.ca	37	17	39118510	39118510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_213656	exon5	c.C900A	p.T300T	.	.	76	33	129	2	.	.
LCA5L	150082	bcgsc.ca	37	21	40778182	40778182	+	Missense_Mutation	SNP	C	C	T	rs11558767	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LCA5L	NM_152505	exon10	c.G1639A	p.G547S	.	.	88	5	209	2	C|0.932;T|0.068	22
LOC645752	0	broad.mit.edu	37	15	78212383	78212383	+	RNA	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	.	.	.	17	6	68	0	.	.
LOC727924	0	broad.mit.edu;bcgsc.ca	37	15	22332622	22332622	+	RNA	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	.	.	.	21	4	56	0	.	.
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113635842	113635842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRIG2	NM_014813	exon3	c.A320G	p.N107S	.	.	122	26	245	0	.	229
LRP1B	53353	broad.mit.edu;ucsc.edu	37	2	141122263	141122263	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LRP1B	NM_018557	exon72	c.G11098T	p.G3700X	.	.	163	48	208	2	.	311
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235964399	235964399	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	LYST	NM_000081	exon10	c.3713-2A>T	.	.	.	19	7	48	0	.	143
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	166990985	166990985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAEL	NM_032858	exon12	c.A1198G	p.I400V	.	.	153	44	395	0	.	91
MANSC4	100287284	broad.mit.edu	37	12	27915935	27915935	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001146221	exon3	c.C759T	p.N253N	.	.	74	5	186	0	.	.
MAVS	57506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3845200	3845200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MAVS	NM_020746	exon6	c.T923C	p.V308A	.	.	67	22	211	1	.	90
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141763307	141763307	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MGAM	NM_004668	exon36	c.T4266C	p.N1422N	.	.	70	21	157	0	.	70
MLL	4297	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	118342446	118342446	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MLL	NM_001197104	exon3	c.C572G	p.S191X	.	.	37	15	143	1	.	1255
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11317091	11317091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	MTOR,NS,malignant_melanoma,+1	MTOR	NM_004958	exon4	c.A403G	p.M135V	.	.	231	157	603	2	.	1439
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48458174	48458174	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYEF2	NM_016132	exon5	c.A481C	p.M161L	.	.	51	17	87	0	.	523
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23902342	23902342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYH7	NM_000257	exon4	c.C296T	p.P99L	.	.	182	66	413	0	.	94
MYO9B	4650	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17298831	17298831	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	MYO9B	NM_001130065	exon19	c.T2665C	p.Y889H	.	.	152	47	384	2	.	67
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	41905450	41905450	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAA16	NM_001110798	exon8	c.T852C	p.S284S	.	.	64	20	115	0	.	90
NAT8	9027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73868277	73868277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NAT8	NM_003960	exon2	c.C479A	p.T160N	.	.	107	44	296	1	.	91
ND1	10625	broad.mit.edu	37	MT	4227	4227	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	ENST00000361390	exon1	c.A921G	p.I307M	.	.	3	2	18	0	.	.
NDN	4692	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931945	23931945	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDN	NM_002487	exon1	c.C420A	p.L140L	.	.	27	9	43	1	.	90
NDRG1	10397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	134270653	134270653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NDRG1	NM_006096	exon7	c.G406A	p.G136S	.	.	212	65	270	0	.	230
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145281400	145281400	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NOTCH2NL	NM_203458	exon4	c.G330T	p.L110L	.	.	1094	78	2309	0	.	211
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176562395	176562395	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	NSD1	NM_022455	exon2	c.T291G	p.F97L	.	.	51	16	142	0	.	188
OBSCN	84033	ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228538636	228538636	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OBSCN	NM_001271223	exon88	c.G21282A	p.P7094P	.	.	142	50	224	2	.	403
ODF1	4956	ucsc.edu	37	8	103573037	103573037	+	Silent	SNP	G	G	C	rs62523273	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ODF1	NM_024410	exon2	c.G678C	p.P226P	.	.	110	59	177	1	G|0.862;C|0.138	70
ODF1	4956	ucsc.edu	37	8	103573042	103573042	+	Missense_Mutation	SNP	G	G	A	rs11992195	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ODF1	NM_024410	exon2	c.G683A	p.S228N	.	.	112	63	176	1	G|0.993;A|0.007	70
ODF2	4957	ucsc.edu;bcgsc.ca	37	9	131246268	131246268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ODF2	NM_153435	exon11	c.G1231A	p.G411R	.	.	26	4	106	0	.	69
OR2M3	127062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248367191	248367191	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OR2M3	NM_001004689	exon1	c.G822T	p.V274V	.	.	145	32	298	2	.	70
OR2T35	403244	bcgsc.ca	37	1	248802249	248802249	+	Missense_Mutation	SNP	T	T	A	rs80289323		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OR2T35	NM_001001827	exon1	c.A311T	p.Y104F	.	.	39	7	52	7	.	46
OSMR	9180	broad.mit.edu	37	5	38933274	38933274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	OSMR	NM_003999	exon18	c.C2668A	p.P890T	.	.	47	3	96	1	.	496
PAQR9	344838	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	3	142682019	142682019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PAQR9	NM_198504	exon1	c.T160G	p.F54V	.	.	67	19	105	0	.	68
PARP9	83666	bcgsc.ca	37	3	122277268	122277268	+	Missense_Mutation	SNP	G	G	A	rs34006803	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PARP9	NM_031458	exon3	c.C62T	p.S21L	.	.	56	4	117	0	G|0.914;A|0.086	525
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30726026	30726026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PCDH7	NM_032457	exon1	c.G2982T	p.R994S	.	.	100	36	222	0	.	229
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39902096	39902096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001100399	exon14	c.A1531G	p.M511V	.	.	34	16	93	0	.	.
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83881724	83881724	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PGM3	NM_001199917	exon12	c.A1381C	p.K461Q	.	.	37	9	137	0	.	90
PHF6	84295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133527959	133527959	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHF6	NM_032335	exon5	c.A395G	p.K132R	.	.	51	27	125	0	.	131
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	587380	587380	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PHRF1	NM_020901	exon4	c.C336A	p.L112L	.	.	49	24	222	0	.	22
PIK3R5	23533	bcgsc.ca	37	17	8791494	8791494	+	Missense_Mutation	SNP	T	T	C	rs141354792	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PIK3R5	NM_001142633	exon10	c.A1610G	p.N537S	.	.	48	4	172	1	T|0.996;C|0.004	1146
PIKFYVE	200576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209190271	209190271	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PIKFYVE	NM_015040	exon20	c.C2736T	p.P912P	.	.	67	17	163	0	.	583
PLXNA4	91584	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131910919	131910919	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PLXNA4	NM_020911	exon9	c.1982+1G>A	.	.	.	78	34	203	1	.	91
POMT2	29954	broad.mit.edu;ucsc.edu	37	14	77744797	77744797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	POMT2	NM_013382	exon20	c.C2087G	p.P696R	.	.	24	7	71	2	.	91
PPFIA1	8500	ucsc.edu	37	11	70218621	70218621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PPFIA1	NM_177423	exon23	c.T3080C	p.L1027S	.	.	10	1	59	0	.	228
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106554333	106554333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PRDM1	NM_001198	exon6	c.C1861T	p.H621Y	.	.	85	36	220	0	.	862
PRR21	643905	bcgsc.ca	37	2	240982228	240982228	+	Missense_Mutation	SNP	C	C	T	rs10439373	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PRR21	NM_001080835	exon1	c.G172A	p.G58S	.	.	235	12	529	11	C|0.491;T|0.509	70
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141874456	141874456	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTK2	NM_005607	exon5	c.C471G	p.N157K	.	.	90	32	169	0	.	1517
PTPN13	5783	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	87655497	87655497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPN13	NM_006264	exon13	c.A1900G	p.K634E	.	.	38	10	105	0	.	230
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8504350	8504350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	PTPRD	NM_130392	exon12	c.A1733G	p.N578S	.	.	135	41	348	0	.	912
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	34319990	34319990	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RBM39	NM_184234	exon4	c.C169T	p.R57X	.	.	57	18	143	0	.	91
RNR2	6053	broad.mit.edu	37	MT	2408	2408	+	RNA	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	.	.	.	4	3	34	0	.	.
RPL23A	6147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	27049757	27049757	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPL23A	NM_000984	exon3	c.A226G	p.I76V	.	.	199	84	351	0	.	91
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78857615	78857615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	RPTOR	NM_020761	exon16	c.G1685A	p.C562Y	.	.	60	17	96	0	.	847
SARDH	1757	bcgsc.ca	37	9	136536793	136536793	+	Silent	SNP	C	C	G	rs2519123	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SARDH	NM_007101	exon18	c.G2190C	p.V730V	.	.	158	6	326	4	C|0.518;G|0.482	90
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6483876	6483876	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SCNN1A	NM_001159576	exon1	c.A251G	p.K84R	.	.	35	16	67	0	.	90
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51169547	51169547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHANK3	NM_033517	exon22	c.G4961T	p.W1654L	.	.	18	5	83	0	.	69
SHISA6	388336	broad.mit.edu;ucsc.edu	37	17	11166793	11166793	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SHISA6	NM_207386	exon2	c.C749A	p.S250X	.	.	94	34	344	2	.	67
SLC13A4	26266	hgsc.bcm.edu;mdanderson.org	37	7	135412217	135412217	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC13A4	NM_012450	exon1	c.G28A	p.V10I	.	.	26	11	8	0	.	90
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19516230	19516230	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC24A2	NM_020344	exon10	c.T1907A	p.M636K	.	.	131	34	267	0	.	517
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33324221	33324221	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC7A9	NM_001243036	exon12	c.A1233T	p.V411V	.	.	152	45	430	1	.	91
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	70634240	70634240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLC8A3	NM_183002	exon2	c.C900T	p.N300N	.	.	23	7	95	0	.	225
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	88330185	88330185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SLITRK5	NM_015567	exon2	c.G2542A	p.V848M	.	.	46	18	84	0	.	94
SMG6	23293	bcgsc.ca	37	17	2091765	2091765	+	Missense_Mutation	SNP	C	C	T	rs903160	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SMG6	NM_017575	exon11	c.G2914A	p.A972T	.	.	90	5	303	5	C|0.625;T|0.375	228
SOX9	6662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	70119055	70119055	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SOX9	NM_000346	exon2	c.C627T	p.A209A	.	.	87	49	116	0	.	514
SPG20OS	100507135	bcgsc.ca;mdanderson.org	37	13	36939921	36939921	+	RNA	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	.	.	.	90	15	282	0	.	.
SRA1	10011	hgsc.bcm.edu	37	5	139930368	139930368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SRA1	NM_001035235	exon5	c.T628C	p.S210P	.	.	95	4	225	0	.	44
SREBF2	6721	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42271606	42271606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SREBF2	NM_004599	exon7	c.G1264A	p.E422K	.	.	88	13	253	1	.	154
SUMF2	25870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	56140741	56140741	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUMF2	NM_015411	exon3	c.G333C	p.W111C	.	.	84	20	178	0	.	92
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70955011	70955011	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SUPV3L1	NM_003171	exon7	c.A921T	p.R307S	.	.	39	20	150	0	.	227
SYAP1	94056	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	16761852	16761852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	SYAP1	NM_032796	exon5	c.C464A	p.P155Q	.	.	23	15	77	1	.	131
TAPBPL	55080	broad.mit.edu	37	12	6568090	6568090	+	Missense_Mutation	SNP	C	C	T	rs201307271		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TAPBPL	NM_018009	exon5	c.C1184T	p.A395V	.	.	47	3	141	1	C|0.999;T|0.001	90
TC2N	123036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92265340	92265340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TC2N	NM_001128596	exon6	c.A630C	p.R210S	.	.	13	7	24	0	.	69
TCEAL8	90843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	102508744	102508744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TCEAL8	NM_001006684	exon2	c.A164G	p.N55S	.	.	75	4	184	0	.	131
TCHH	7062	bcgsc.ca	37	1	152079989	152079989	+	Missense_Mutation	SNP	T	T	G	rs1131471	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TCHH	NM_007113	exon3	c.A5704C	p.K1902Q	.	.	99	5	268	0	T|0.479;G|0.521	72
TET1	80312	bcgsc.ca	37	10	70405855	70405855	+	Missense_Mutation	SNP	A	A	G	rs3998860	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TET1	NM_030625	exon4	c.A3369G	p.I1123M	.	.	70	6	231	2	A|0.276;G|0.724	663
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62230425	62230425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TEX2	NM_018469	exon10	c.A3041T	p.E1014V	.	.	66	28	115	0	.	91
TMEM173	340061	bcgsc.ca	37	5	138856982	138856982	+	Missense_Mutation	SNP	C	C	T	rs7380824	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TMEM173	NM_198282	exon7	c.G878A	p.R293Q	.	.	143	6	272	1	C|0.780;T|0.220	69
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578513	7578513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	TP53,arm,other,-2	TP53	NM_000546	exon5	c.G417T	p.K139N	.	.	48	24	111	0	.	70225
TRPM7	54822	ucsc.edu	37	15	50955220	50955220	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TRPM7	NM_017672	exon2	c.C27T	p.S9S	.	.	44	4	104	0	.	392
TTI1	9675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36634716	36634716	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TTI1	NM_014657	exon4	c.C2386T	p.P796S	.	.	100	32	203	0	.	94
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22848249	22848249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	TUBGCP5	NM_052903	exon9	c.G839T	p.G280V	.	.	40	11	129	0	.	91
UBC	7316	bcgsc.ca	37	12	125397080	125397101	+	Frame_Shift_Del	DEL	TTGTCTTGGATCTTTGCCTTGA	TTGTCTTGGATCTTTGCCTTGA	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	TTGTCTTGGATCTTTGCCTTGA	TTGTCTTGGATCTTTGCCTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBC	NM_021009	exon2	c.1217_1238del	p.406_413del	.	.	371	41	1140	1	.	46
UBL7	84993	hgsc.bcm.edu	37	15	74742014	74742014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBL7	NM_201265	exon8	c.G667T	p.G223C	.	.	79	4	191	0	.	91
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19483269	19483269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UBR4	NM_020765	exon41	c.G5911A	p.G1971R	.	.	163	82	352	0	.	612
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33486394	33486394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	UNC45B	NM_001267052	exon8	c.A809G	p.D270G	.	.	95	22	143	0	.	157
URGCP	55665	ucsc.edu;bcgsc.ca	37	7	43917614	43917614	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	URGCP	NM_001077663	exon6	c.T1448G	p.I483S	.	.	109	49	281	2	.	94
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234438104	234438104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP40	NM_018218	exon11	c.C1559A	p.A520E	.	.	24	8	61	0	.	455
USP42	84132	ucsc.edu;bcgsc.ca	37	7	6183809	6183809	+	Silent	SNP	C	C	T	rs151011297		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	USP42	NM_032172	exon9	c.C972T	p.T324T	.	.	22	4	75	0	C|0.999;T|0.001	659
VAV3	10451	bcgsc.ca	37	1	108185301	108185301	+	Missense_Mutation	SNP	C	C	G	rs12403266	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	VAV3,NS,carcinoma,-2	VAV3	NM_006113	exon20	c.G1854C	p.Q618H	.	.	57	4	95	0	C|0.866;G|0.134	1339
VAV3	10451	bcgsc.ca	37	1	108185309	108185309	+	Missense_Mutation	SNP	G	G	A	rs12410676	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VAV3	NM_006113	exon20	c.C1846T	p.P616S	.	.	54	4	98	0	G|0.884;A|0.116	1339
VEZF1	7716	bcgsc.ca	37	17	56060215	56060215	+	Silent	SNP	T	T	C	rs2228270	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VEZF1	NM_007146	exon2	c.A573G	p.R191R	.	.	217	7	370	0	T|0.916;C|0.084	136
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42476724	42476724	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VPS39	NM_015289	exon8	c.709delG	p.V237fs	.	.	114	41	265	0	.	229
VSIG8	391123	mdanderson.org	37	1	159825679	159825679	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	VSIG8	NM_001013661	exon6	c.A965T	p.E322V	.	.	12	3	8	0	.	68
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609400	31609400	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.A673G	p.K225E	.	.	60	19	172	0	.	158
XDH	7498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	31609402	31609402	+	Missense_Mutation	SNP	C	C	G	rs112466737	byfrequency;alternate_allele	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	XDH	NM_000379	exon9	c.G671C	p.R224P	.	.	59	20	170	0	C|0.999;T|0.001	158
ZBTB7B	51043	bcgsc.ca	37	1	154987526	154987526	+	Silent	SNP	C	C	T	rs11264295	byfrequency	TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZBTB7B	NM_001252406	exon4	c.C492T	p.I164I	.	.	56	4	114	0	C|0.487;T|0.513	90
ZNF420	147923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37582003	37582003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF420	NM_144689	exon4	c.A116G	p.Y39C	.	.	90	21	151	0	.	90
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	57011983	57011983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF451	NM_001031623	exon10	c.G1100T	p.C367F	.	.	84	19	172	0	.	93
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48370889	48370889	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF488	NM_153034	exon2	c.G357T	p.E119D	.	.	75	34	232	0	.	91
ZNF711	7552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84526390	84526390	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZNF711	NM_021998	exon9	c.T1842C	p.T614T	.	.	85	49	200	1	.	134
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	88	33	170	1	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	104	41	191	0	.	.
ZNF880	400713	broad.mit.edu	37	19	52887222	52887222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	NM_001145434	exon4	c.G389A	p.G130E	.	.	64	3	236	0	.	.
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	102175049	102175049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	ZPLD1	NM_175056	exon4	c.C388T	p.P130S	.	.	54	23	140	0	.	72
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37310028	37310029	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-G3-A5SJ-01A-11D-A27I-10	TCGA-G3-A5SJ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	92f0cb64-0a29-4ca2-92d0-94d1f0cf050b	b8cc644d-6325-45dc-bc23-58f5e69f8242	.	.	.	.	.	p.S406N	.	.	.	.	.	.	.	
