Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACPP	55	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132050504	132050504	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ACPP	NM_001099	exon3	c.A230T	p.Q77L	.	.	90	27	94	0	.	91
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	175897719	175897719	+	Missense_Mutation	SNP	G	G	A	rs201308805		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.G1043A	p.R348H	.	.	173	12	149	0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175898784	175898784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAM29	NM_001130703	exon4	c.C2108G	p.P703R	.	.	57	17	59	0	.	729
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	72503886	72503886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADAMTS14	NM_139155	exon14	c.G2132T	p.G711V	.	.	161	10	122	0	.	232
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25059801	25059801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ADCY3	NM_004036	exon8	c.G1647T	p.E549D	.	.	181	57	109	1	.	94
ALB	213	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74281995	74281995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALB	NM_000477	exon10	c.T1214C	p.V405A	.	.	133	29	142	1	.	96
ALKBH5	54890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18110272	18110272	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ALKBH5	NM_017758	exon3	c.A995T	p.D332V	.	.	124	43	72	0	.	90
APOA4	337	broad.mit.edu;ucsc.edu	37	11	116693402	116693402	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	APOA4	NM_000482	exon2	c.A149T	p.Q50L	.	.	186	5	132	0	.	22
ARHGAP23	57636	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	36622415	36622415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARHGAP23	NM_001199417	exon7	c.C491T	p.S164F	.	.	56	20	30	0	.	205
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	128839106	128839106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARHGAP32	NM_001142685	exon22	c.A5960G	p.H1987R	.	.	266	25	198	0	.	231
ARMC1	55156	bcgsc.ca	37	8	66525548	66525548	+	Silent	SNP	T	T	C	rs11559265	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ARMC1	NM_018120	exon4	c.A396G	p.Q132Q	.	.	187	6	170	0	T|0.731;C|0.269	91
ATP2B3	492	broad.mit.edu	37	X	152821620	152821620	+	Silent	SNP	C	C	T	rs140411431	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ATP2B3	NM_001001344	exon12	c.C2172T	p.P724P	.	.	534	9	192	0	C|1.000;T|0.000	109
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33397473	33397473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BBS9	NM_198428	exon16	c.C1559T	p.P520L	.	.	46	17	39	0	.	230
BIRC2	329	hgsc.bcm.edu;broad.mit.edu	37	11	102221361	102221362	+	In_Frame_Ins	INS	-	-	TAG	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BIRC2	NM_001256163	exon2	c.776_777insTAG	p.F259delinsFS	.	.	50	0	32	0	.	660
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31609598	31609598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_025227	exon15	c.T1328C	p.V443A	.	.	113	33	93	0	.	.
BRF1	2972	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105722840	105722840	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BRF1	NM_001242790	exon4	c.T486G	p.R162R	.	.	242	68	161	0	.	155
BRWD3	254065	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	79984393	79984393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	BRWD3	NM_153252	exon14	c.C1244T	p.P415L	.	.	279	18	121	1	.	134
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201058470	201058470	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA1S	NM_000069	exon6	c.C816T	p.I272I	.	.	419	170	202	0	.	94
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	55108222	55108222	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CACNA2D3	NM_018398	exon38	c.T3265G	p.F1089V	.	.	208	10	118	0	.	138
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	62107453	62107453	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CCT4	NM_006430	exon4	c.T347G	p.L116R	.	.	117	32	78	0	.	92
CD93	22918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23065572	23065572	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CD93	NM_012072	exon1	c.G1258A	p.E420K	.	.	220	77	149	0	.	153
CDH7	1005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	63489356	63489356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CDH7	NM_004361	exon5	c.C665T	p.A222V	.	.	176	45	134	0	.	94
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	65305033	65305033	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CEP68	NM_015147	exon5	c.C2039G	p.S680C	.	.	147	42	103	0	.	91
CHDC2	286464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	36103589	36103589	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_173695	exon5	c.T575C	p.V192A	.	.	69	52	58	0	.	.
CHEK2P2	646096	bcgsc.ca	37	15	20488770	20488770	+	RNA	SNP	A	A	T	rs74751600	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	508	16	428	0	.	.
CNGB1	1258	ucsc.edu;bcgsc.ca	37	16	57951296	57951296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNGB1	NM_001297	exon21	c.C2042T	p.P681L	.	.	532	139	238	2	.	137
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	125547604	125547604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CNTNAP5	NM_130773	exon18	c.C2875A	p.H959N	.	.	332	98	230	2	.	524
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130104098	130104098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_153264	exon5	c.A1752G	p.I584M	.	.	80	29	76	0	.	.
CWC25	54883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36958366	36958366	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_017748	exon10	c.G1257A	p.E419E	.	.	118	35	65	0	.	.
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49046853	49046853	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CWH43	NM_025087	exon14	c.A1854G	p.R618R	.	.	92	19	85	0	.	93
CYP2E1	1571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	135340926	135340949	+	In_Frame_Del	DEL	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	CCTGCTGGTGTGGGCGGCCTTCCT	CCTGCTGGTGTGGGCGGCCTTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP2E1	NM_000773	exon1	c.27_50del	p.9_17del	.	.	32	8	65	0	.	514
CYP46A1	10858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	100191750	100191750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	CYP46A1	NM_006668	exon13	c.G1199A	p.R400Q	.	.	151	49	113	0	.	90
DCAF15	90379	broad.mit.edu	37	19	14070435	14070435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCAF15	NM_138353	exon8	c.G1261A	p.D421N	.	.	158	7	90	0	.	90
DCDC1	341019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	31312242	31312242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCDC1	NM_181807	exon7	c.G912A	p.M304I	.	.	161	11	125	0	.	91
DCDC5	100506627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	30921967	30921972	+	In_Frame_Del	DEL	GACTTG	GACTTG	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	GACTTG	GACTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCDC5	NM_020869	exon14	c.1896_1901del	p.632_634del	.	.	120	14	149	0	.	23
DCHS1	8642	broad.mit.edu	37	11	6644545	6644545	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DCHS1	NM_003737	exon21	c.G8362A	p.A2788T	.	.	91	3	65	0	.	73
DDX52	11056	broad.mit.edu	37	17	35990076	35990076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DDX52	NM_007010	exon5	c.G731A	p.R244Q	.	.	140	4	154	0	.	228
DLG3	1741	broad.mit.edu	37	X	69672476	69672476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DLG3	NM_020730	exon1	c.A5G	p.E2G	.	.	117	23	97	2	.	219
DMRTA1	63951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	22447695	22447695	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DMRTA1	NM_022160	exon1	c.G631T	p.E211X	.	.	148	42	135	0	.	578
DMTF1	9988	broad.mit.edu	37	7	86815201	86815201	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DMTF1	NM_001142327	exon12	c.A1106G	p.E369G	.	.	443	9	327	0	.	91
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76440846	76440846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH17	NM_173628	exon71	c.G11368T	p.D3790Y	.	.	200	66	118	0	.	142
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11725907	11725907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNAH9	NM_001372	exon47	c.G9003T	p.E3001D	.	.	123	51	115	0	.	168
DNASE1L1	1774	broad.mit.edu	37	X	153633387	153633387	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DNASE1L1	NM_006730	exon3	c.T173G	p.V58G	.	.	281	33	103	13	.	554
DPF3	8110	broad.mit.edu;bcgsc.ca	37	14	73238520	73238520	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DPF3	NM_012074	exon2	c.T114C	p.R38R	.	.	218	7	150	0	.	1
DPPA4	55211	bcgsc.ca	37	3	109052732	109052732	+	Missense_Mutation	SNP	T	T	C	rs3762648	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	DPPA4	NM_018189	exon2	c.A163G	p.I55V	.	.	129	5	91	0	T|0.557;C|0.443	227
EHMT1	79813	broad.mit.edu	37	9	140637837	140637837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EHMT1	NM_001145527	exon5	c.G838T	p.V280F	.	.	36	10	22	2	.	154
ELMO2	63916	hgsc.bcm.edu	37	20	45014770	45014770	+	Missense_Mutation	SNP	G	G	A	rs112131818	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ELMO2	NM_182764	exon8	c.C670T	p.L224F	.	.	116	6	103	0	G|0.999;A|0.001	91
ELMO2	63916	hgsc.bcm.edu	37	20	45014804	45014804	+	Silent	SNP	G	G	A	rs201990540		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ELMO2	NM_182764	exon8	c.C636T	p.A212A	.	.	146	6	118	0	G|0.998;A|0.002	91
EPB41L2	2037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	131179313	131179313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EPB41L2	NM_001431	exon19	c.A2981G	p.H994R	.	.	193	69	146	0	.	91
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	95677274	95677274	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ESRP1	NM_001122827	exon8	c.875delC	p.T292fs	.	.	276	86	231	0	.	94
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108383488	108383488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EXPH5	NM_015065	exon6	c.C2746A	p.P916T	.	.	89	28	77	0	.	95
EYA1	2138	bcgsc.ca	37	8	72211295	72211295	+	Silent	SNP	T	T	C	rs1445398	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	EYA1	NM_000503	exon9	c.A813G	p.T271T	.	.	240	9	220	0	T|0.888;C|0.112	652
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	5	14608988	14608988	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM105A	NM_019018	exon7	c.A759C	p.E253D	.	.	87	5	61	0	.	91
FAM166B	730112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35563264	35563264	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_001099951	exon2	c.C185T	p.P62L	.	.	178	53	134	0	.	.
FAM46A	55603	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	82459698	82459698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM46A	NM_017633	exon3	c.A1043G	p.E348G	.	.	159	47	143	1	.	90
FAM73B	84895	broad.mit.edu;bcgsc.ca	37	9	131810739	131810739	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAM73B	NM_032809	exon4	c.G341C	p.S114T	.	.	233	9	142	0	.	91
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92538485	92538485	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FAT3	NM_001008781	exon10	c.T9063C	p.D3021D	.	.	230	71	198	0	.	73
FFAR2	2867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35940974	35940974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FFAR2	NM_005306	exon1	c.T358G	p.S120A	.	.	194	60	157	0	.	90
FKBP10	60681	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	39975544	39975544	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FKBP10	NM_021939	exon5	c.A810G	p.L270L	.	.	152	7	108	0	.	227
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152279760	152279760	+	Silent	SNP	G	G	A	rs3126073	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	FLG	NM_002016	exon3	c.C7602T	p.H2534H	.	.	361	99	225	0	G|0.987;A|0.013	106
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151818957	151818957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GABRQ	NM_018558	exon7	c.T815C	p.V272A	.	.	445	171	148	0	.	133
GALR1	2587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	74980684	74980684	+	Silent	SNP	G	G	T	rs199730182	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GALR1	NM_001480	exon3	c.G876T	p.A292A	.	.	124	41	76	0	G|0.999;A|0.001	522
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	147381088	147381088	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GJA8	NM_005267	exon2	c.1006delC	p.P336fs	.	.	201	39	115	0	.	138
GOLGA6D	653643	broad.mit.edu	37	15	75586787	75586787	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_001145224	exon18	c.C2053T	p.Q685X	.	.	336	10	210	0	.	.
GP9	2815	broad.mit.edu;mdanderson.org	37	3	128781113	128781113	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	GP9	NM_000174	exon3	c.T531C	p.D177D	.	.	30	9	31	0	.	90
HERC2	8924	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	28421656	28421656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HERC2	NM_004667	exon63	c.C9604G	p.L3202V	.	.	281	81	209	1	.	234
HIBCH	26275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	191077767	191077767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	HIBCH	NM_014362	exon12	c.T926G	p.I309S	.	.	26	8	34	0	.	90
HOXD12	3238	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	176964643	176964643	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_021193	exon1	c.G114C	p.A38A	.	.	48	10	39	0	.	.
IFNA16	3449	broad.mit.edu;bcgsc.ca	37	9	21216801	21216801	+	Missense_Mutation	SNP	T	T	A	rs148820316	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IFNA16	NM_002173	exon1	c.A504T	p.R168S	.	.	231	9	168	0	T|1.000;C|0.000	91
IKBIP	121457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99028193	99028193	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IKBIP	NM_201612	exon3	c.180-2A>T	.	.	.	35	15	45	0	.	226
INSR	3643	bcgsc.ca	37	19	7170598	7170598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	INSR	NM_000208	exon6	c.G1433A	p.R478H	.	.	209	73	158	5	.	1381
IRAK3	11213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66611016	66611016	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	IRAK3	NM_007199	exon6	c.653+1G>T	.	.	.	88	28	107	0	.	1379
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	50685666	50685666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ISL1	NM_002202	exon4	c.C665A	p.P222H	.	.	256	84	148	0	.	515
KCTD16	57528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	143853624	143853624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KCTD16	NM_020768	exon4	c.C1234T	p.P412S	.	.	91	25	92	0	.	137
KDM5C	8242	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53228047	53228047	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KDM5C	NM_004187	exon16	c.T2267A	p.L756H	.	.	252	157	149	1	.	1272
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6864199	6864199	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0232	NM_014743	exon7	c.T2090A	p.F697Y	.	.	244	86	188	0	.	92
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27772791	27772791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA0556	NM_015202	exon19	c.G3689A	p.G1230D	.	.	101	8	55	0	.	141
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39879769	39879769	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_015038	exon1	c.G3832A	p.E1278K	.	.	145	55	91	0	.	.
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113373818	113373818	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2018	NM_001009899	exon7	c.A6711G	p.L2237L	.	.	184	62	128	0	.	93
KIAA2022	340533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73962088	73962088	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KIAA2022	NM_001008537	exon3	c.A2304T	p.S768S	.	.	85	63	62	0	.	183
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	133	38	90	0	A|0.046;T|0.954	22
KRTAP4-6	81871	ucsc.edu	37	17	39296254	39296254	+	Silent	SNP	C	C	T	rs72483263		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_030976	exon1	c.G486A	p.P162P	.	.	83	16	63	6	C|0.500;T|0.500	.
LINC00294	283267	ucsc.edu	37	11	33097724	33097724	+	RNA	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	52	17	53	0	.	.
LOC146481	0	broad.mit.edu	37	16	34712195	34712195	+	RNA	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	32	8	20	0	.	.
LOC401010	0	ucsc.edu;bcgsc.ca	37	2	132202250	132202250	+	RNA	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	18	8	25	0	.	.
LRIT1	26103	broad.mit.edu	37	10	85991740	85991740	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	LRIT1	NM_015613	exon4	c.G1815A	p.V605V	.	.	84	5	76	1	.	90
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	LSM14A	NM_001114093	exon7	c.T801G	p.A267A	.	.	58	3	29	1	T|0.999;G|0.001	91
MAP3K9	4293	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	71215655	71215655	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MAP3K9	NM_033141	exon5	c.T1217C	p.I406T	.	.	286	94	201	1	.	546
MARC2	54996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220935024	220935024	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_017898	exon3	c.C471T	p.G157G	.	.	269	137	134	0	.	.
MAZ	4150	mdanderson.org	37	16	29821450	29821450	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MAZ	NM_002383	exon5	c.A1332G	p.A444A	.	.	22	10	11	0	.	136
MEGF6	1953	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3432019	3432019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEGF6	NM_001409	exon6	c.G677A	p.R226H	.	.	197	65	134	1	.	90
MEIS3	56917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47910667	47910667	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEIS3	NM_020160	exon9	c.G1015C	p.E339Q	.	.	79	20	39	0	.	90
MEX3B	84206	broad.mit.edu	37	15	82336824	82336824	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MEX3B	NM_032246	exon2	c.T387C	p.S129S	.	.	112	5	57	0	.	226
MIA3	375056	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222805522	222805522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MIA3	NM_198551	exon5	c.A3185G	p.H1062R	.	.	433	99	205	1	.	98
MIR374B	100126317	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	73438407	73438407	+	RNA	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	114	97	64	0	.	.
MIR524	574478	ucsc.edu	37	19	54214286	54214286	+	RNA	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	152	56	168	3	.	.
MTRF1	9617	bcgsc.ca	37	13	41835039	41835039	+	Missense_Mutation	SNP	T	T	C	rs9532758	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MTRF1	NM_004294	exon2	c.A5G	p.N2S	.	.	77	4	55	0	T|0.911;C|0.089	90
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	7892874	7892874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MTRR	NM_024010	exon11	c.G1486C	p.V496L	.	.	213	14	150	0	.	91
MUC2	4583	broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MUC2	NM_002457	exon30	c.C5111T	p.T1704I	.	.	161	9	102	2	.	90
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu	37	17	1381960	1381960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MYO1C	NM_001080779	exon10	c.C1162T	p.R388C	.	.	145	6	124	0	.	90
MYO7A	4647	broad.mit.edu;bcgsc.ca	37	11	76901902	76901902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	MYO7A	NM_000260	exon30	c.C3911G	p.A1304G	.	.	277	7	190	0	.	138
NCAN	1463	broad.mit.edu	37	19	19339317	19339317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NCAN	NM_004386	exon8	c.C2888A	p.T963N	.	.	168	4	103	0	.	94
NHEJ1	79840	broad.mit.edu	37	2	220022918	220022918	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NHEJ1	NM_024782	exon2	c.A167T	p.Q56L	.	.	183	6	126	0	.	227
NOP56	10528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2635207	2635207	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NOP56	NM_006392	exon4	c.C356G	p.A119G	.	.	202	65	184	0	.	92
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	176721088	176721088	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NSD1	NM_022455	exon23	c.C6719A	p.S2240X	.	.	87	34	79	0	.	188
NUP205	23165	broad.mit.edu	37	7	135307542	135307542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NUP205	NM_015135	exon31	c.G4348T	p.E1450X	.	.	45	3	38	0	.	207
NXPH2	11249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	139428566	139428566	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	NXPH2	NM_007226	exon2	c.G721C	p.D241H	.	.	90	31	58	0	.	72
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487546	248487546	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR2M7	NM_001004691	exon1	c.G325C	p.G109R	.	.	414	188	197	1	.	70
OR5T1	390155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56043388	56043388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR5T1	NM_001004745	exon1	c.A274G	p.K92E	.	.	111	40	79	0	.	71
OR6K3	391114	broad.mit.edu	37	1	158687039	158687039	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	OR6K3	NM_001005327	exon1	c.T867C	p.Y289Y	.	.	502	10	299	0	.	70
PCDH11Y	83259	bcgsc.ca	37	Y	4968203	4968203	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_032972	exon2	c.A2584T	p.I862F	.	.	394	213	240	3	.	.
PCDHA6	56142	broad.mit.edu	37	5	140209079	140209079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PCDHA6	NM_018909	exon1	c.A1403C	p.N468T	.	.	204	40	153	30	.	92
PGBD5	79605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	230468595	230468595	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PGBD5	NM_001258311	exon5	c.A1268G	p.Q423R	.	.	293	22	198	0	.	93
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9371192	9371192	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLCB4	NM_182797	exon15	c.A1253G	p.Y418C	.	.	107	29	94	0	.	274
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161139737	161139737	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PLG	NM_000301	exon9	c.A963G	p.E321E	.	.	233	24	189	0	.	94
POU2AF1	5450	broad.mit.edu	37	11	111229602	111229602	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	POU2AF1	NM_006235	exon2	c.C58T	p.Q20X	.	.	66	3	55	0	.	658
PPM1F	9647	broad.mit.edu	37	22	22285649	22285649	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	PPM1F,NS,carcinoma,-1	PPM1F	NM_014634	exon6	c.C762A	p.G254G	.	.	85	7	62	1	.	292
PRKACA	5566	broad.mit.edu	37	19	14217654	14217654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PRKACA	NM_002730	exon3	c.C155T	p.T52M	.	.	222	6	192	1	.	978
PROZ	8858	broad.mit.edu	37	13	113825987	113825987	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PROZ	NM_001256134	exon9	c.G837A	p.A279A	.	.	126	5	93	0	.	90
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121653216	121653216	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PTPRZ1	NM_002851	exon12	c.G4116C	p.G1372G	.	.	235	63	196	0	.	699
PTX4	390667	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1536357	1536357	+	Silent	SNP	G	G	A	rs112226694	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	PTX4	NM_001013658	exon3	c.C1005T	p.F335F	.	.	124	56	85	0	G|0.979;A|0.021	90
RHBDF2	79651	broad.mit.edu	37	17	74473774	74473774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RHBDF2	NM_024599	exon7	c.G853A	p.G285R	.	.	123	4	71	0	.	90
RNF166	115992	hgsc.bcm.edu	37	16	88764990	88764990	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RNF166	NM_178841	exon5	c.T568G	p.W190G	.	.	141	6	79	0	.	226
RP1L1	94137	broad.mit.edu;bcgsc.ca	37	8	10466903	10466903	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RP1L1	NM_178857	exon4	c.C4705A	p.Q1569K	.	.	46	5	42	0	.	139
RXFP3	51289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	33938060	33938060	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RXFP3	NM_016568	exon1	c.G1215A	p.W405X	.	.	115	46	74	0	.	91
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237823313	237823313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	RYR2	NM_001035	exon55	c.T8237C	p.I2746T	.	.	63	19	57	0	.	158
S100A4	6275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153517143	153517143	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	S100A4	NM_002961	exon2	c.C128A	p.P43H	.	.	179	53	109	0	.	90
SDC2	6383	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	97621749	97621749	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDC2	NM_002998	exon5	c.G579A	p.K193K	.	.	148	41	80	2	.	516
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	3658865	3658865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SDK1	NM_152744	exon2	c.A452T	p.E151V	.	.	152	47	90	0	.	138
SERPINF1	5176	bcgsc.ca	37	17	1674429	1674429	+	Silent	SNP	T	T	C	rs8074840	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SERPINF1	NM_002615	exon4	c.T390C	p.T130T	.	.	113	6	119	2	T|0.735;C|0.265	227
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170077556	170077556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SH3RF1	NM_020870	exon3	c.A668C	p.K223T	.	.	253	92	184	0	.	567
SHC1	6464	broad.mit.edu	37	1	154942771	154942771	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SHC1	NM_183001	exon1	c.C232T	p.P78S	.	.	435	8	178	0	.	847
SLC26A4	5172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107342429	107342429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC26A4	NM_000441	exon17	c.C1961T	p.P654L	.	.	263	83	212	0	.	96
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153750269	153750269	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC27A3	NM_024330	exon4	c.G1210C	p.A404P	.	.	267	12	105	0	.	91
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69925257	69925257	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLC39A9	NM_018375	exon7	c.C871G	p.L291V	.	.	143	48	73	0	.	90
SLC6A10P	386757	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	32891000	32891000	+	RNA	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	111	74	53	0	.	.
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144905414	144905414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SLITRK2	NM_001144005	exon5	c.T1471A	p.F491I	.	.	121	38	41	0	.	136
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42159172	42159172	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SPTBN5	NM_016642	exon36	c.C6360T	p.T2120T	.	.	102	43	78	0	.	91
SRPR	6734	broad.mit.edu	37	11	126137083	126137083	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	SRPR	NM_003139	exon4	c.G513A	p.G171G	.	.	93	3	91	0	.	90
TAF1C	9013	broad.mit.edu	37	16	84214979	84214979	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TAF1C	NM_005679	exon10	c.G1197T	p.V399V	.	.	217	17	97	1	.	91
TBP	6908	hgsc.bcm.edu	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TBP	NM_003194	exon3	c.A189G	p.Q63Q	.	.	132	7	79	0	.	91
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71840272	71840272	+	Silent	SNP	G	G	T	rs140444730	alternate_allele	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TJP2	NM_001170416	exon6	c.G1098T	p.T366T	.	.	121	47	94	0	G|0.999;A|0.000	115
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145668658	145668658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TONSL	NM_013432	exon4	c.C311A	p.T104K	.	.	197	61	111	0	.	92
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30138285	30138285	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRIM15	NM_033229	exon5	c.A739C	p.M247L	.	.	106	29	63	0	.	90
TRIM71	131405	broad.mit.edu	37	3	32931996	32931996	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRIM71	NM_001039111	exon4	c.C1300T	p.R434X	.	.	243	6	148	0	.	92
TRIP11	9321	ucsc.edu	37	14	92480761	92480761	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRIP11	NM_004239	exon7	c.C984T	p.D328D	.	.	34	4	39	0	.	1400
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	3481004	3481004	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TRPV1	NM_018727	exon11	c.T1601G	p.L534R	.	.	171	89	149	0	.	23
TTN-AS1	100506866	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179448634	179448634	+	RNA	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	151	41	102	0	.	.
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48073678	48073678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	TXK	NM_003328	exon14	c.G1371T	p.W457C	.	.	46	13	25	0	.	521
U2SURP	23350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	142747437	142747437	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	U2SURP	NM_001080415	exon16	c.1559delA	p.E520fs	.	.	248	84	220	0	.	71
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43547324	43547324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	UMODL1	NM_173568	exon18	c.C3886A	p.P1296T	.	.	165	41	147	0	.	93
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215960064	215960064	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	USH2A	NM_206933	exon52	c.A10335G	p.S3445S	.	.	505	145	235	0	.	115
VEZF1	7716	broad.mit.edu	37	17	56060477	56060477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	VEZF1	NM_007146	exon2	c.G311A	p.R104Q	.	.	101	3	88	1	.	136
WDPCP	51057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	63631475	63631475	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	WDPCP	NM_015910	exon10	c.A1143G	p.S381S	.	.	97	7	75	0	.	91
WDR86	349136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151093228	151093228	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	NM_198285	exon3	c.G360C	p.R120R	.	.	84	24	54	0	.	.
ZACN	353174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74076379	74076379	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZACN	NM_180990	exon5	c.G418C	p.D140H	.	.	245	75	137	0	.	90
ZBTB40	9923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22848029	22848029	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZBTB40	NM_001083621	exon16	c.C3089A	p.P1030H	.	.	713	223	453	1	.	91
ZDHHC8P1	150244	broad.mit.edu	37	22	23736241	23736241	+	RNA	SNP	G	G	A	rs34481096	bycluster;byfrequency;by1000genomes	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	.	.	.	.	.	.	.	122	4	87	0	G|0.847;A|0.153	.
ZEB2	9839	broad.mit.edu	37	2	145156631	145156631	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZEB2	NM_014795	exon8	c.T2123G	p.L708R	.	.	235	9	182	7	.	297
ZHX2	22882	bcgsc.ca	37	8	123964431	123964431	+	Silent	SNP	G	G	A	rs3204141	byfrequency	TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZHX2	NM_014943	exon3	c.G681A	p.S227S	.	.	258	10	186	3	G|0.767;A|0.233	227
ZIC3	7547	broad.mit.edu	37	X	136651196	136651196	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZIC3	NM_003413	exon2	c.A1196G	p.H399R	.	.	505	10	258	2	.	195
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44797559	44797559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZMIZ2	NM_174929	exon5	c.C665G	p.S222C	.	.	124	41	91	0	.	137
ZNF287	57336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	16470785	16470785	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZNF287	NM_020653	exon2	c.A261C	p.Q87H	.	.	177	10	108	0	.	90
ZSWIM3	140831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44506970	44506970	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SK-01A-11D-A27I-10	TCGA-G3-A5SK-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	30544c96-0217-45e7-98dc-3dcbf4cf5ab3	2acbefee-83af-414b-8ddf-9f823a91bb22	.	ZSWIM3	NM_080752	exon2	c.C1773G	p.L591L	.	.	358	109	224	0	.	92
