Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC3	8714	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48735797	48735797	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ABCC3	NM_003786	exon6	c.A614C	p.N205T	.	.	176	49	197	7	.	93
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23530298	23530298	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ACIN1	NM_014977	exon18	c.A3694G	p.S1232G	.	.	93	40	156	0	.	156
ADAD2	161931	bcgsc.ca	37	16	84229287	84229287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADAD2	NM_139174	exon7	c.G1282A	p.A428T	.	.	24	15	38	1	.	68
ADAM21	8747	bcgsc.ca	37	14	70925501	70925501	+	Missense_Mutation	SNP	G	G	C	rs72735760	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADAM21	NM_003813	exon2	c.G1285C	p.E429Q	.	.	118	5	111	1	G|0.967;C|0.033	92
ADCY6	112	broad.mit.edu	37	12	49170944	49170944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADCY6	NM_020983	exon6	c.G1319A	p.R440Q	.	.	65	4	82	0	.	90
ADORA1	134	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	203134729	203134729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADORA1	NM_001048230	exon3	c.A682G	p.K228E	.	.	177	49	199	3	.	153
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24837383	24837383	+	Missense_Mutation	SNP	G	G	A	rs201827862		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADORA2A	NM_000675	exon3	c.G1165A	p.E389K	.	.	160	59	234	0	.	90
ADSS	159	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244582115	244582115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ADSS	NM_001126	exon9	c.A892G	p.K298E	.	.	329	35	238	1	.	229
AIM1L	55057	broad.mit.edu	37	1	26648530	26648530	+	Missense_Mutation	SNP	G	G	A	rs140821928	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AIM1L	NM_001039775	exon20	c.C4915T	p.R1639W	.	.	86	3	127	0	G|0.999;A|0.001	91
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6328940	6328940	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AIPL1	NM_014336	exon6	c.C995G	p.T332R	.	.	26	11	26	0	.	90
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737496	4737496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKAP3	NM_006422	exon4	c.C572T	p.A191V	.	.	94	37	102	0	.	292
AKR7A2	8574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19634996	19634996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AKR7A2	NM_003689	exon2	c.A439G	p.T147A	.	.	115	41	163	0	.	90
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	110819712	110819712	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANAPC7	NM_016238	exon8	c.A1079G	p.Y360C	.	.	47	18	64	0	.	226
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63063267	63063267	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANGPTL3	NM_014495	exon1	c.A30A	p.X10X	.	.	47	16	54	0	.	130
ANKRD50	57182	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	125591958	125591958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ANKRD50	NM_020337	exon4	c.G2474A	p.G825E	.	.	277	52	143	2	.	90
AP4S1	11154	broad.mit.edu	37	14	31549805	31549805	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	AP4S1	NM_007077	exon5	c.T321G	p.N107K	.	.	53	4	71	0	.	226
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36363455	36363455	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	APLP1	NM_005166	exon7	c.C921T	p.H307H	.	.	126	50	160	0	.	92
ARAP1	116985	broad.mit.edu	37	11	72437829	72437829	+	Silent	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ARAP1	NM_001040118	exon3	c.A345C	p.P115P	.	.	6	3	14	2	.	91
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	46245723	46245723	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ARID2	NM_152641	exon15	c.C3817T	p.R1273X	.	.	67	17	64	0	.	100
ATL2	64225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	38525447	38525447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ATL2	NM_001135673	exon12	c.C1471A	p.L491M	.	.	59	5	73	0	.	228
BAI1	575	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143623422	143623422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAI1	NM_001702	exon27	c.T3827C	p.F1276S	.	.	138	13	85	0	.	1129
BASP1	10409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	17275846	17275846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BASP1	NM_006317	exon2	c.C521A	p.P174H	.	.	35	16	52	0	.	90
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	160287506	160287506	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BAZ2B	NM_013450	exon10	c.G2062C	p.G688R	.	.	135	8	122	0	.	94
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147086412	147086412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BCL9	NM_004326	exon6	c.A557G	p.N186S	.	.	180	63	162	0	.	707
BPIFC	254240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32810334	32810335	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_174932	exon15	c.1480_1481insT	p.L494fs	.	.	209	22	202	0	.	.
BPNT1	10380	ucsc.edu	37	1	220231276	220231276	+	RNA	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BPNT1	.	.	.	.	.	.	104	1	73	0	.	91
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	15	83698992	83698992	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	BTBD1	NM_025238	exon5	c.C951A	p.Y317X	.	.	132	10	140	0	.	91
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81097428	81097428	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C16orf46	NM_001100873	exon2	c.C133T	p.L45F	.	.	68	29	94	0	.	90
C1orf68	100129271	broad.mit.edu	37	1	152692472	152692472	+	Missense_Mutation	SNP	A	A	C	rs873775	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C1orf68	NM_001024679	exon1	c.A475C	p.T159P	.	.	248	7	162	1	A|0.656;C|0.344	69
C2orf71	388939	broad.mit.edu	37	2	29293726	29293726	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C2orf71	NM_001029883	exon1	c.A3402C	p.K1134N	.	.	52	7	93	11	.	91
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	6631388	6631388	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	C7orf26	NM_024067	exon2	c.C304T	p.Q102X	.	.	163	20	202	0	.	91
CARD10	29775	hgsc.bcm.edu;broad.mit.edu	37	22	37888678	37888678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CARD10	NM_014550	exon17	c.C2608T	p.R870W	.	.	119	5	154	0	.	662
CARS2	79587	bcgsc.ca	37	13	111298392	111298392	+	Silent	SNP	A	A	G	rs436462	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CARS2	NM_024537	exon12	c.T1239C	p.D413D	.	.	92	5	158	0	A|0.580;G|0.420	90
CCDC129	223075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31683405	31683405	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_001257968	exon11	c.C2499A	p.I833I	.	.	190	96	106	1	.	.
CD1C	911	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158262506	158262506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CD1C	NM_001765	exon4	c.A731T	p.Q244L	.	.	245	24	103	1	.	94
CEP104	9731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3750533	3750533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CEP104	NM_014704	exon12	c.A1552T	p.S518C	.	.	93	30	148	0	.	92
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	439928	439928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CHL1	NM_006614	exon25	c.T3113C	p.I1038T	.	.	69	12	83	0	.	583
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86964423	86964423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CLCA1	NM_001285	exon13	c.C2282T	p.A761V	.	.	132	25	138	0	.	91
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97428070	97428070	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CNNM4	NM_020184	exon1	c.A1334G	p.Y445C	.	.	198	79	266	0	.	154
CNTRL	11064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	123937425	123937425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CNTRL	NM_007018	exon41	c.G6877A	p.A2293T	.	.	105	14	71	0	.	661
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46888317	46888317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL18A1	NM_030582	exon2	c.C808T	p.R270C	.	.	126	38	226	0	.	90
COL1A1	1277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48264129	48264129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL1A1	NM_000088	exon48	c.T3686A	p.L1229H	.	.	87	41	137	0	.	986
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48391816	48391816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	COL2A1	NM_001844	exon5	c.A374G	p.Q125R	.	.	100	39	156	0	.	92
COLGALT1	79709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17691557	17691557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_024656	exon11	c.C1444T	p.P482S	.	.	71	29	99	0	.	.
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148552327	148552327	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CPB1	NM_001871	exon3	c.C190A	p.H64N	.	.	190	89	191	0	.	92
CRSP8P	0	bcgsc.ca	37	5	79647211	79647211	+	RNA	SNP	T	T	C	rs62618672	bycluster;byfrequency;by1000genomes	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	.	.	.	.	.	.	186	6	282	0	T|0.989;C|0.011	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	G	rs121913396	bycluster	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95G	p.D32G	.	.	232	73	170	0	.	24361
CYP11B2	1585	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	143996507	143996507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CYP11B2	NM_000498	exon3	c.C550A	p.L184M	.	.	531	56	284	1	.	90
CYP8B1	1582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42916920	42916920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	CYP8B1	NM_004391	exon1	c.A389T	p.H130L	.	.	133	39	158	0	.	92
DDX42	11325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	61864631	61864631	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DDX42	NM_203499	exon2	c.221+1G>-	.	.	.	95	25	117	0	.	230
DLL3	10683	bcgsc.ca	37	19	39994711	39994711	+	Missense_Mutation	SNP	T	T	C	rs1110627	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DLL3	NM_016941	exon5	c.T653C	p.L218P	.	.	92	5	138	0	T|0.400;C|0.600	1083
DNAAF1	123872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	84209627	84209627	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DNAAF1	NM_178452	exon11	c.1787delA	p.E596fs	.	.	101	33	195	0	.	73
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21784074	21784074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DNAH11	.	.	.	.	.	.	77	15	77	0	.	146
DNAH3	55567	bcgsc.ca	37	16	21157375	21157375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DNAH3	NM_017539	exon2	c.A152G	p.H51R	.	.	90	5	99	0	.	167
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117321317	117321317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DSCAML1	NM_020693	exon20	c.G3836A	p.G1279E	.	.	47	9	69	0	.	159
DTNB	1838	broad.mit.edu	37	2	25606755	25606755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DTNB	NM_021907	exon19	c.A1829G	p.E610G	.	.	129	4	188	0	.	137
DUSP22	56940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	348175	348175	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	DUSP22	NM_020185	exon6	c.G336C	p.E112D	.	.	273	15	305	0	.	252
EDNRA	1909	ucsc.edu;bcgsc.ca	37	4	148407017	148407017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EDNRA	NM_001166055	exon2	c.A184G	p.N62D	.	.	289	121	259	2	.	586
EPAS1	2034	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	46611722	46611722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EPAS1	NM_001430	exon16	c.G2536T	p.V846L	.	.	78	25	131	2	.	227
EPHA5	2044	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	66280067	66280067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EPHA5	NM_004439	exon7	c.G1622A	p.R541Q	.	.	140	54	96	1	.	1430
ERI2	112479	ucsc.edu	37	16	20810369	20810369	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ERI2	NM_001142725	exon9	c.C753T	p.F251F	.	.	22	4	25	0	.	153
ERP29	10961	broad.mit.edu	37	12	112459955	112459955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ERP29	NM_001034025	exon2	c.T146C	p.I49T	.	.	60	4	89	0	.	90
ESPL1	9700	bcgsc.ca	37	12	53670561	53670561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ESPL1	NM_012291	exon8	c.G1858A	p.A620T	.	.	91	41	112	3	.	228
EXOSC10	5394	broad.mit.edu	37	1	11148250	11148250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	EXOSC10	NM_002685	exon7	c.C764T	p.A255V	.	.	40	3	56	0	.	116
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177245347	177245347	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FAM5B	NM_021165	exon6	c.G789A	p.L263L	.	.	240	27	143	0	.	28
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242430491	242430491	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FARP2	NM_014808	exon23	c.A2520G	p.K840K	.	.	243	79	442	1	.	93
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	80040959	80040959	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FASN	NM_004104	exon33	c.G5598A	p.K1866K	.	.	69	35	80	0	.	90
FCRL1	115350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157768011	157768011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FCRL1	NM_001159398	exon8	c.C1054A	p.Q352K	.	.	173	10	78	0	.	153
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155505929	155505929	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FGA	NM_000508	exon6	c.A1948G	p.I650V	.	.	39	18	29	0	.	93
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FRG1B	.	.	.	.	.	.	734	39	682	20	.	22
FRMD4A	55691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13708157	13708157	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	FRMD4A	NM_018027	exon18	c.A1543C	p.N515H	.	.	64	28	81	0	.	229
GFAP	2670	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	42988813	42988813	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	GFAP	NM_001131019	exon6	c.G918A	p.L306L	.	.	18	8	27	0	.	516
GOLGA1	2800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127685398	127685398	+	Missense_Mutation	SNP	C	C	A	rs138655913	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	GOLGA1	NM_002077	exon8	c.G537T	p.Q179H	.	.	33	15	27	0	C|1.000;T|0.000	91
HBE1	3046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5291042	5291042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HBE1	NM_005330	exon1	c.G79C	p.E27Q	.	.	90	10	58	0	.	90
HEPH	9843	broad.mit.edu	37	X	65480000	65480000	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HEPH	NM_138737	exon19	c.T3257C	p.V1086A	.	.	65	3	53	0	.	135
HGF	3082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	81372744	81372744	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HGF	NM_000601	exon7	c.G790T	p.D264Y	.	.	181	23	85	0	.	516
HIATL1	84641	broad.mit.edu;bcgsc.ca	37	9	97216242	97216242	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HIATL1	NM_032558	exon9	c.G918A	p.T306T	.	.	84	28	83	2	.	92
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12886218	12886218	+	Splice_Site	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	HOOK2	NM_001100176	exon2	c.45+1G>-	.	.	.	96	26	132	0	.	92
IL36A	27179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113763592	113763592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	IL36A	NM_014440	exon2	c.A52G	p.I18V	.	.	95	38	119	0	.	93
IRF6	3664	broad.mit.edu	37	1	209964204	209964204	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	IRF6	NM_006147	exon7	c.C696G	p.Y232X	.	.	177	6	109	0	.	92
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu	37	10	15559170	15559170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ITGA8	NM_003638	exon30	c.C3179G	p.T1060S	.	.	36	5	25	0	.	230
ITSN1	6453	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35169914	35169914	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ITSN1	NM_003024	exon18	c.2182+2T>C	.	.	.	149	57	185	1	.	94
KCNK2	3776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	215408294	215408294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KCNK2	NM_001017425	exon7	c.C1087T	p.R363W	.	.	146	39	62	0	.	90
KCNQ3	3786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133153487	133153487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KCNQ3	NM_004519	exon10	c.G1354A	p.A452T	.	.	231	58	131	1	.	138
KIAA0141	9812	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	141313823	141313823	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA0141	NM_001142603	exon9	c.T916C	p.L306L	.	.	134	47	196	2	.	91
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95523540	95523540	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon13	c.A3263G	p.N1088S	.	.	180	23	58	0	.	92
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95543221	95543221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1429	NM_015496	exon6	c.G577A	p.D193N	.	.	116	82	47	0	.	92
KIAA1522	57648	broad.mit.edu;mdanderson.org	37	1	33236026	33236026	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KIAA1522	NM_020888	exon6	c.T1246C	p.W416R	.	.	22	5	29	0	.	90
KLHL26	55295	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18779891	18779891	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KLHL26	NM_018316	exon3	c.T1684G	p.Y562D	.	.	64	26	123	2	.	91
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT4	NM_002272	exon1	c.T240C	p.F80F	.	.	56	17	62	1	A|1.000;|0.000	96
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT4	NM_002272	exon1	c.C237T	p.G79G	.	.	56	16	62	1	.	96
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	52979943	52979943	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT72	NM_001146225	exon9	c.1359delC	p.S453fs	.	.	82	28	68	0	.	96
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT8	NM_001256282	exon2	c.T175G	p.S59A	.	.	56	6	63	1	.	92
KRT8	3856	ucsc.edu	37	12	53298699	53298699	+	Missense_Mutation	SNP	G	G	A	rs201807576	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRT8	NM_001256282	exon2	c.C151T	p.R51C	.	.	56	8	69	1	G|0.944;A|0.055	92
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	130	44	94	0	A|0.046;T|0.954	22
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	43	17	43	1	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	20	6	21	0	C|0.500;T|0.500	91
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21441703	21441703	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LAMA3	NM_001127717	exon35	c.C4516A	p.L1506I	.	.	136	58	125	0	.	100
LDOC1L	84247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	44893045	44893045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LDOC1L	NM_032287	exon2	c.C392T	p.P131L	.	.	55	30	64	0	.	69
LGI2	55203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25005084	25005084	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LGI2	NM_018176	exon8	c.T1627G	p.L543V	.	.	46	15	77	0	.	90
LOC284009	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2310348	2310348	+	RNA	SNP	T	T	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	.	.	.	.	.	.	70	29	106	0	.	.
LRP5	4041	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68181295	68181295	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LRP5	NM_002335	exon12	c.T2642G	p.L881R	.	.	83	29	137	1	.	661
LRP5	4041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68216342	68216342	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	LRP5	NM_002335	exon23	c.A4652T	p.D1551V	.	.	62	24	92	0	.	661
LRRC37A4P	55073	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	.	.	.	.	.	.	227	4	256	1	G|1.000;|0.000	.
MAGEE2	139599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75003638	75003638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAGEE2	NM_138703	exon1	c.C1249T	p.R417C	.	.	91	62	96	0	.	132
MAP3K11	4296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65380716	65380716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAP3K11	NM_002419	exon1	c.T512A	p.L171Q	.	.	85	31	149	0	.	980
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	30747090	30747090	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MAP3K8	NM_001244134	exon6	c.C951A	p.L317L	.	.	150	54	147	0	.	981
MIR524	574478	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54214331	54214331	+	RNA	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	.	.	.	.	.	.	86	23	171	0	.	.
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158813151	158813151	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MNDA	NM_002432	exon3	c.C348T	p.P116P	.	.	315	65	181	0	.	94
MPI	4351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75182913	75182914	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MPI	NM_002435	exon2	c.62_63insG	p.M21fs	.	.	80	21	112	0	.	92
MUC16	94025	bcgsc.ca	37	19	9076858	9076858	+	Missense_Mutation	SNP	C	C	T	rs2547074	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MUC16	NM_024690	exon3	c.G10588A	p.V3530I	.	.	331	13	273	0	C|0.749;T|0.251	566
MUC16	94025	bcgsc.ca	37	19	9076929	9076929	+	Missense_Mutation	SNP	T	T	G	rs2547075	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MUC16	NM_024690	exon3	c.A10517C	p.K3506T	.	.	256	10	227	1	T|0.743;G|0.257	566
MUC16	94025	bcgsc.ca	37	19	9076950	9076950	+	Missense_Mutation	SNP	C	C	A	rs2547076	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MUC16	NM_024690	exon3	c.G10496T	p.R3499M	.	.	246	7	232	1	C|0.751;A|0.249	566
MUC5B	727897	bcgsc.ca;mdanderson.org	37	11	1266085	1266085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_002458	exon31	c.C7975T	p.P2659S	.	.	914	61	1872	3	.	.
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23898464	23898464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	MYH7	NM_000257	exon13	c.G1231A	p.V411I	.	.	169	62	215	0	.	94
NBPF22P	285622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	85581569	85581569	+	RNA	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	.	.	.	.	.	.	937	101	833	0	.	.
ND1	10625	broad.mit.edu;bcgsc.ca	37	MT	3767	3767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	ENST00000361390	exon1	c.T461C	p.L154S	.	.	36	25	22	0	.	.
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31926222	31926223	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_002904	exon2	c.2_3insA	p.M1fs	.	.	111	28	93	0	.	.
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	21555918	21555918	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NELL1	NM_006157	exon16	c.1646-2A>G	.	.	.	103	29	66	0	.	155
NFATC4	4776	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24839776	24839776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NFATC4	NM_001198967	exon3	c.T1361C	p.I454T	.	.	58	20	70	1	.	92
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	37017238	37017238	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NIPBL	NM_015384	exon24	c.G4894C	p.G1632R	.	.	169	13	206	0	.	293
NLRP3	114548	broad.mit.edu	37	1	247587264	247587264	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NLRP3	NM_183395	exon3	c.C519G	p.L173L	.	.	305	8	240	0	.	674
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50745410	50745410	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NOD2	NM_022162	exon4	c.T1588C	p.S530P	.	.	47	17	80	0	.	231
NOTCH3	4854	bcgsc.ca	37	19	15302456	15302456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NOTCH3	NM_000435	exon6	c.C815T	p.T272M	.	.	124	5	201	5	.	855
NPBWR1	2831	broad.mit.edu;ucsc.edu	37	8	53853329	53853329	+	Missense_Mutation	SNP	A	A	T	rs141356626	alternate_allele	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NPBWR1	NM_005285	exon1	c.A862T	p.I288F	.	.	269	40	123	2	A|1.000;G|0.000	155
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35809218	35809218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NPR2	NM_003995	exon21	c.G3052A	p.E1018K	.	.	49	18	48	0	.	335
NR0B2	8431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27240341	27240341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR0B2	NM_021969	exon1	c.G91A	p.A31T	.	.	34	10	41	0	.	186
NR2C2	7182	hgsc.bcm.edu;bcgsc.ca	37	3	15062430	15062430	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NR2C2	NM_003298	exon6	c.A604G	p.K202E	.	.	77	4	68	0	.	226
NT5C3A	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	33057096	33057100	+	Frame_Shift_Del	DEL	ATGAT	ATGAT	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	ATGAT	ATGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_001002010	exon7	c.659_663del	p.220_221del	.	.	134	24	156	0	.	.
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3797196	3797196	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	NUP98	NM_016320	exon5	c.T411A	p.S137S	.	.	163	37	200	0	.	703
OR11A1	26531	broad.mit.edu	37	6	29394942	29394942	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	OR11A1	NM_013937	exon1	c.G477A	p.L159L	.	.	216	6	110	0	.	23
OVGP1	5016	ucsc.edu	37	1	111957517	111957517	+	Missense_Mutation	SNP	T	T	C	rs3767609	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	OVGP1	NM_002557	exon11	c.A1606G	p.S536G	.	.	68	16	80	0	T|0.776;C|0.224	135
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572647	140572647	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCDHB10	NM_018930	exon1	c.C522T	p.P174P	.	.	186	67	323	0	.	92
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82545309	82545309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PCLO	NM_014510	exon7	c.C11993T	p.A3998V	.	.	51	22	27	0	.	29
PDGFD	80310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103814257	103814257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PDGFD	NM_025208	exon5	c.G695T	p.W232L	.	.	119	27	82	0	.	723
PEX5L	51555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179592187	179592187	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PEX5L	NM_016559	exon7	c.A654G	p.P218P	.	.	51	17	39	0	.	156
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	170112622	170112622	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PHF10	NM_018288	exon8	c.G817T	p.E273X	.	.	63	14	129	0	.	226
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	18691110	18691110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PIK3C2G	NM_004570	exon24	c.T3221G	p.F1074C	.	.	70	26	25	0	.	1312
PITRM1	10531	bcgsc.ca	37	10	3208566	3208566	+	Silent	SNP	C	C	T	rs114690446		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PITRM1	NM_001242307	exon4	c.G273A	p.Q91Q	.	.	87	0	91	1	.	91
PKD1L2	114780	bcgsc.ca	37	16	81253917	81253917	+	Missense_Mutation	SNP	A	A	G	rs9924530	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PKD1L2	NM_001076780	exon1	c.T59C	p.V20A	.	.	223	7	246	4	A|0.429;G|0.571	92
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51907882	51907882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PKHD1	NM_170724	exon27	c.G2872T	p.D958Y	.	.	139	33	55	0	.	603
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186948508	186948508	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PLA2G4A	NM_024420	exon17	c.A2022G	p.P674P	.	.	168	80	180	0	.	721
PLXNB3	5365	bcgsc.ca	37	X	153042419	153042419	+	Silent	SNP	G	G	A	rs34966902	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PLXNB3	NM_001163257	exon30	c.G4980A	p.R1660R	.	.	128	6	280	4	G|0.439;A|0.561	130
PLXND1	23129	broad.mit.edu;bcgsc.ca	37	3	129294662	129294662	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PLXND1	NM_015103	exon10	c.A2383G	p.I795V	.	.	340	9	574	3	.	90
PPP2R4	5524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131898785	131898785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PPP2R4	NM_178001	exon8	c.A701G	p.Y234C	.	.	134	51	179	0	.	660
PQLC3	130814	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	11300640	11300640	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PQLC3	NM_152391	exon2	c.G192C	p.L64L	.	.	134	7	212	0	.	90
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43221871	43221871	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRDM15	NM_022115	exon31	c.C4053T	p.T1351T	.	.	182	31	271	0	.	90
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	54031194	54031194	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PRKG1	NM_006258	exon11	c.C1258T	p.H420Y	.	.	100	32	42	0	.	523
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3002002	3002002	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	PTPRA	NM_002836	exon18	c.G1089A	p.G363G	.	.	223	78	264	0	.	227
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34824058	34824058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RAI14	NM_001145525	exon17	c.C2120T	p.S707F	.	.	252	40	297	0	.	91
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	86672363	86672363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RASA1	NM_002890	exon16	c.A2165C	p.E722A	.	.	94	9	55	0	.	661
RBMS3	27303	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	30032668	30032668	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RBMS3	NM_001003793	exon14	c.A1275G	p.E425E	.	.	204	86	169	1	.	90
RDH12	145226	bcgsc.ca;mdanderson.org	37	14	68195937	68195937	+	Missense_Mutation	SNP	C	C	G	rs104894476	bycluster	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RDH12	NM_152443	exon8	c.C688G	p.P230A	.	.	37	16	37	1	.	91
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103179563	103179563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RELN	NM_173054	exon45	c.A7142G	p.D2381G	.	.	150	68	104	0	.	574
REV3L	5980	bcgsc.ca	37	6	111688927	111688927	+	Silent	SNP	G	G	A	rs3218587	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	REV3L	NM_002912	exon14	c.C6064T	p.L2022L	.	.	76	4	92	0	G|0.969;A|0.031	294
RHPN1	114822	broad.mit.edu;bcgsc.ca	37	8	144459549	144459549	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RHPN1	NM_052924	exon4	c.306-1G>C	.	.	.	290	8	176	1	.	67
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55534004	55534004	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	RP1	NM_006269	exon2	c.A478G	p.R160G	.	.	243	37	97	0	.	102
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50886721	50886721	+	Silent	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SBF1	NM_002972	exon38	c.T5304A	p.A1768A	.	.	90	61	161	1	.	90
SCMH1	22955	broad.mit.edu	37	1	41579010	41579010	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SCMH1	NM_001172219	exon8	c.C690T	p.F230F	.	.	97	3	78	2	.	90
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	110442575	110442575	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SEC24B	NM_006323	exon14	c.2302-1G>A	.	.	.	70	16	123	0	.	137
SERTAD4	56256	broad.mit.edu;bcgsc.ca	37	1	210412874	210412874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SERTAD4	NM_019605	exon3	c.C212T	p.T71I	.	.	242	9	210	0	.	92
SGPP1	81537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64165361	64165361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SGPP1	NM_030791	exon2	c.G700A	p.G234R	.	.	94	24	158	0	.	90
SIM2	6493	broad.mit.edu	37	21	38117505	38117505	+	Silent	SNP	C	C	T	rs2073602	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SIM2	NM_009586	exon10	c.C1644T	p.G548G	.	.	295	8	398	1	C|0.739;T|0.261	90
SIRT3	23410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	230535	230535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SIRT3	NM_012239	exon4	c.T724G	p.S242A	.	.	111	37	165	0	.	650
SKIV2L2	23517	ucsc.edu	37	5	54649027	54649027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SKIV2L2	NM_015360	exon14	c.G1463T	p.G488V	.	.	20	2	19	0	.	92
SLC1A7	6512	bcgsc.ca	37	1	53554565	53554565	+	Missense_Mutation	SNP	C	C	T	rs145514886	byfrequency	TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC1A7	NM_006671	exon10	c.G1448A	p.R483Q	.	.	94	6	162	1	C|0.993;T|0.007	155
SLC25A15	10166	broad.mit.edu;bcgsc.ca	37	13	41367293	41367293	+	Splice_Site	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC25A15	.	.	.	.	.	.	61	19	61	0	.	226
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	50251707	50251707	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC38A3	NM_006841	exon2	c.C75T	p.V25V	.	.	135	58	207	0	.	67
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19445791	19445791	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC47A1	NM_018242	exon2	c.T221G	p.V74G	.	.	94	13	148	0	.	90
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220503556	220503556	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SLC4A3	NM_201574	exon19	c.C3069A	p.V1023V	.	.	81	25	139	0	.	157
SMARCA2	6595	broad.mit.edu	37	9	2115936	2115936	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SMARCA2	NM_139045	exon25	c.A3571G	p.K1191E	.	.	151	5	186	1	.	653
SMG7	9887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183515162	183515162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SMG7	NM_173156	exon17	c.G2432T	p.G811V	.	.	240	47	140	2	.	92
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158614175	158614175	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SPTA1	NM_003126	exon30	c.4206delG	p.G1402fs	.	.	165	42	77	0	.	142
SRR	63826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2227109	2227109	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	SRR	NM_021947	exon8	c.C965G	p.S322C	.	.	118	15	135	1	.	90
TAGLN2	8407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159888612	159888612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TAGLN2	NM_003564	exon5	c.G578A	p.G193E	.	.	134	84	151	0	.	90
TINF2	26277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24709083	24709083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TINF2	NM_001099274	exon9	c.T1276G	p.C426G	.	.	171	69	228	0	.	227
TLR4	7099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	120476662	120476662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TLR4	NM_138554	exon3	c.G2256C	p.E752D	.	.	73	5	53	0	.	577
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	94817076	94817076	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TMEM67	NM_153704	exon23	c.A2409G	p.E803E	.	.	120	7	49	0	.	92
TMPRSS15	5651	hgsc.bcm.edu	37	21	19647566	19647566	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TMPRSS15	NM_002772	exon24	c.C2852A	p.T951N	.	.	91	4	92	0	.	160
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32037394	32037394	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon15	c.G5523T	p.K1841N	.	.	79	8	55	0	.	90
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32041646	32041646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TNXB	NM_019105	exon12	c.C4459A	p.P1487T	.	.	134	31	111	0	.	90
TP73	7161	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3649427	3649427	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TP73	NM_005427	exon14	c.C1695A	p.N565K	.	.	18	4	40	0	.	415
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	141468638	141468638	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TRAPPC9	NM_031466	exon1	c.G26A	p.R9H	.	.	59	11	24	0	.	228
TRIM51	84767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55659022	55659022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_032681	exon7	c.G1273A	p.V425I	.	.	39	12	34	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179590290	179590290	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	TTN	NM_001267550	exon71	c.20641delC	p.Q6881fs	.	.	41	11	59	0	.	636
UAP1L1	91373	broad.mit.edu;bcgsc.ca	37	9	139973543	139973543	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UAP1L1	NM_207309	exon4	c.G786A	p.L262L	.	.	108	5	183	0	.	91
UGT2B10	7365	bcgsc.ca	37	4	69870758	69870758	+	RNA	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UGT2B10	.	.	.	.	.	.	78	21	39	0	.	65
UNC80	285175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210824368	210824368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UNC80	NM_032504	exon50	c.A7544G	p.Q2515R	.	.	90	33	78	1	.	90
UQCRB	7381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97245396	97245396	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UQCRB	NM_001254752	exon2	c.T79G	p.F27V	.	.	145	14	40	0	.	91
UTP6	55813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	30190389	30190389	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	UTP6	NM_018428	exon19	c.G1783C	p.G595R	.	.	101	6	132	0	.	91
VSIG10	54621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118504496	118504496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	.	NM_019086	exon9	c.A1571G	p.D524G	.	.	185	71	209	2	.	.
WDR17	116966	broad.mit.edu;ucsc.edu	37	4	177067183	177067183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	WDR17	NM_170710	exon13	c.C1639T	p.R547C	.	.	93	16	75	2	.	95
WDR93	56964	ucsc.edu	37	15	90258282	90258282	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	WDR93	NM_020212	exon6	c.C712T	p.Q238X	.	.	36	4	48	0	.	24
XPO4	64328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	21361634	21361634	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	XPO4	NM_022459	exon21	c.C3151G	p.R1051G	.	.	92	31	139	0	.	272
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	110034060	110034060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZC3H12C	NM_033390	exon5	c.A1211G	p.K404R	.	.	73	5	90	0	.	68
ZEB1	6935	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	31809696	31809696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZEB1	NM_001174096	exon7	c.G1436A	p.S479N	.	.	67	36	66	1	.	518
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68265045	68265045	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZFYVE26	NM_015346	exon11	c.T1934A	p.M645K	.	.	121	54	163	0	.	162
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57931234	57931234	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF17	NM_006959	exon3	c.T374G	p.L125R	.	.	162	10	187	0	.	90
ZNF208	7757	bcgsc.ca	37	19	22156870	22156870	+	Silent	SNP	G	G	A	rs200854866		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF208	NM_007153	exon4	c.C966T	p.F322F	.	.	50	6	28	0	.	7
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57036179	57036179	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF471	NM_020813	exon5	c.A743G	p.H248R	.	.	80	34	79	0	.	154
ZNF816	125893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53453569	53453569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SL-01A-11D-A27I-10	TCGA-G3-A5SL-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	70422e6d-cb1f-4284-8be9-1d4517ffad60	a38d4467-c3e5-4639-ad4f-88bcd7ab9f26	.	ZNF816	NM_001202457	exon4	c.G1459T	p.G487C	.	.	52	10	68	0	.	68
