Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52575807	52575807	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	A1CF	NM_001198820	exon10	c.A1124G	p.H375R	.	.	177	50	205	0	.	68
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107607783	107607783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ABCA1	NM_005502	exon8	c.A788G	p.H263R	.	.	79	21	87	0	.	1016
ACE	1636	broad.mit.edu	37	17	61561892	61561892	+	Silent	SNP	G	G	A	rs200255554		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ACE	NM_000789	exon12	c.G1911A	p.P637P	.	.	79	3	86	0	G|0.999;A|0.000	94
ACTN3	89	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66330589	66330589	+	RNA	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ACTN3	.	.	.	.	.	.	104	18	113	0	.	90
ADORA2A	135	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24837235	24837235	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ADORA2A	NM_000675	exon3	c.C1017T	p.N339N	.	.	90	15	82	1	.	90
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105420945	105420945	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	AHNAK2	NM_138420	exon7	c.G843A	p.S281S	.	.	48	28	74	0	.	47
ALDH2	217	broad.mit.edu;bcgsc.ca	37	12	112220988	112220988	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ALDH2	NM_000690	exon3	c.C246T	p.A82A	.	.	50	18	44	1	.	228
ANKRD52	283373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56638565	56638565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ANKRD52	NM_173595	exon24	c.G2593A	p.A865T	.	.	59	8	73	0	.	70
ATN1	1822	ucsc.edu;mdanderson.org	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ATN1	NM_001007026	exon5	c.G1476A	p.Q492Q	.	.	86	11	115	0	.	139
AXDND1	126859	hgsc.bcm.edu	37	1	179504037	179504037	+	Missense_Mutation	SNP	G	G	C	rs6425573		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	AXDND1	NM_144696	exon25	c.G2971C	p.E991Q	.	.	271	20	220	0	G|1.000;|0.000	93
B4GALNT1	2583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58020643	58020643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	B4GALNT1	NM_001478	exon11	c.G1486A	p.D496N	.	.	121	28	156	0	.	514
BACE2	25825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	42598204	42598204	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BACE2	NM_138992	exon2	c.C324A	p.L108L	.	.	200	14	160	0	.	92
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	107491987	107491987	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	BBX	NM_001142568	exon11	c.C1419T	p.C473C	.	.	265	101	255	0	.	94
BRD8	10902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137501703	137501703	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	BRD8,NS,carcinoma,-2	BRD8	NM_006696	exon12	c.C1311T	p.I437I	.	.	61	18	79	0	.	91
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2774038	2774038	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CACNA1C	NM_199460	exon37	c.C4424T	p.P1475L	.	.	77	30	69	0	.	34
CAND2	23066	broad.mit.edu	37	3	12859357	12859357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CAND2	NM_001162499	exon10	c.C2926T	p.R976W	.	.	66	9	85	2	.	72
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76834775	76834775	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CAPN5	NM_004055	exon13	c.G1782A	p.Q594Q	.	.	144	29	136	0	.	90
CCDC34	91057	bcgsc.ca	37	11	27384585	27384585	+	Missense_Mutation	SNP	G	G	A	rs11549824	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CCDC34	NM_030771	exon1	c.C157T	p.P53S	.	.	87	5	104	1	G|0.951;A|0.049	90
CCHCR1	54535	bcgsc.ca	37	6	31116246	31116246	+	Missense_Mutation	SNP	G	G	A	rs130068	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CCHCR1	NM_001105564	exon10	c.C1516T	p.R506W	.	.	155	7	183	2	G|0.568;A|0.432	91
CCP110	9738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19551992	19551992	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CCP110	NM_001199022	exon5	c.A1932G	p.L644L	.	.	336	133	298	0	.	90
CD300E	342510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72613454	72613454	+	Missense_Mutation	SNP	G	G	C	rs201462551	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CD300E	NM_181449	exon2	c.C191G	p.T64S	.	.	164	18	150	0	G|0.999;A|0.000	156
CDH4	1002	broad.mit.edu;bcgsc.ca	37	20	60499390	60499390	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CDH4	NM_001794	exon11	c.1629-2A>G	.	.	.	47	5	85	0	.	282
CERS1	10715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18994929	18994929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_198207	exon3	c.C557T	p.T186I	.	.	202	22	163	1	.	.
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61764754	61764754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHD7	NM_017780	exon29	c.G5842A	p.V1948M	.	.	127	53	112	0	.	141
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	403447	403447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHL1	NM_001253388	exon11	c.T1372C	p.F458L	.	.	126	59	126	0	.	583
CHRND	1144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	233390976	233390976	+	Silent	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CHRND	NM_000751	exon1	c.T51C	p.C17C	.	.	215	24	197	0	.	155
CKAP5	9793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46817173	46817173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CKAP5	NM_001008938	exon13	c.G1621A	p.G541R	.	.	129	13	138	1	.	92
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140123517	140123517	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CLSTN2	NM_022131	exon4	c.G546A	p.E182E	.	.	235	84	260	0	.	157
COG5	10466	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	106921825	106921827	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	COG5	NM_006348	exon14	c.1586_1588del	p.529_530del	.	.	114	19	98	0	.	93
COL4A6	1288	bcgsc.ca	37	X	107408694	107408694	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	COL4A6	NM_001847	exon38	c.T3717C	p.P1239P	.	.	40	4	61	0	.	199
CPQ	10404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	97847252	97847252	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_016134	exon3	c.G485C	p.R162T	.	.	235	88	215	0	.	.
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207644362	207644362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CR2	NM_001006658	exon8	c.G1423A	p.G475R	.	.	238	27	192	0	.	232
CSAG1	158511	bcgsc.ca	37	X	151909156	151909156	+	Missense_Mutation	SNP	A	A	G	rs2515848	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CSAG1	NM_153478	exon5	c.A185G	p.K62R	.	.	319	12	338	1	A|0.381;G|0.619	131
CSNK1G3	1456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122940520	122940520	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	CSNK1G3	NM_001044723	exon11	c.A1285G	p.T429A	.	.	266	54	290	1	.	358
CYP2D7P1	1564	broad.mit.edu	37	22	42538509	42538509	+	RNA	SNP	G	G	A	rs56023519	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	167	6	222	0	G|0.642;A|0.358	.
DAPL1	92196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	159651944	159651944	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DAPL1	NM_001017920	exon1	c.58+2T>A	.	.	.	237	32	271	0	.	22
DGKQ	1609	bcgsc.ca	37	4	960836	960836	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DGKQ	NM_001347	exon10	c.C1227A	p.G409G	.	.	54	4	70	0	.	537
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30627550	30627550	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DHX16	NM_003587	exon11	c.A1817T	p.Q606L	.	.	72	10	109	0	.	228
DIS3	22894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73336102	73336102	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DIS3	NM_014953	exon17	c.A2301C	p.L767F	.	.	61	18	93	0	.	90
DNAI1	27019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34514529	34514529	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DNAI1	NM_012144	exon17	c.C1707T	p.D569D	.	.	90	14	91	0	.	90
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	7	111387428	111387428	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOCK4	NM_014705	exon42	c.T4461C	p.I1487I	.	.	60	33	70	2	.	26
DOK6	220164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67425047	67425047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DOK6	NM_152721	exon7	c.G794A	p.R265H	.	.	97	42	85	1	.	92
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	117342745	117342745	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DSCAML1	NM_020693	exon15	c.G2972A	p.W991X	.	.	178	12	163	0	.	159
DSG4	147409	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28972153	28972153	+	Silent	SNP	G	G	A	rs35210710	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DSG4	NM_001134453	exon8	c.G855A	p.S285S	.	.	163	27	131	0	G|0.984;A|0.016	177
DYRK2	8445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	68051874	68051874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	DYRK2	NM_006482	exon3	c.G1187A	p.G396E	.	.	113	23	107	1	.	861
EEF1A1	1915	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	74229722	74229722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A1	NM_001402	exon2	c.A28G	p.I10V	.	.	16	7	15	0	.	226
EEF1A2	1917	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62120486	62120486	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EEF1A2	NM_001958	exon7	c.C1049G	p.P350R	.	.	78	25	73	1	.	90
EFHA2	286097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	16921654	16921654	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EFHA2	NM_181723	exon2	c.443delG	p.R148fs	.	.	77	14	96	0	.	91
EFR3B	22979	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25359436	25359436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_014971	exon14	c.G1529A	p.C510Y	.	.	66	41	90	1	.	.
ESPNL	339768	bcgsc.ca	37	2	239040187	239040187	+	Silent	SNP	T	T	C	rs12692215	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ESPNL	NM_194312	exon9	c.T2832C	p.G944G	.	.	9	3	69	0	T|0.172;C|0.828	69
ESPNL	339768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	239039657	239039657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ESPNL	NM_194312	exon9	c.G2302T	p.A768S	.	.	10	5	18	0	.	69
EXOC6B	23233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	72692418	72692418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	EXOC6B	NM_015189	exon18	c.G1851T	p.K617N	.	.	136	57	149	0	.	68
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	75	5	74	1	.	.
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042218	100042218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C266T	p.A89V	.	.	122	18	119	0	.	90
FAM71C	196472	hgsc.bcm.edu;bcgsc.ca	37	12	100042223	100042223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.C271T	p.P91S	.	.	120	19	111	0	.	90
FAM71C	196472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	100042220	100042221	+	Frame_Shift_Del	DEL	CG	CG	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM71C	NM_153364	exon1	c.268_269del	p.90_90del	.	.	120	18	116	0	.	90
FAM81B	153643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94749799	94749799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FAM81B	NM_152548	exon4	c.G442A	p.G148S	.	.	174	33	165	2	.	92
FBXO4	26272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41927119	41927119	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FBXO4	NM_033484	exon2	c.A194T	p.D65V	.	.	67	10	70	0	.	227
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14862981	14862981	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FGD5	NM_152536	exon1	c.G2403T	p.T801T	.	.	80	32	81	0	.	231
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156482	34156482	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FHOD3	NM_025135	exon6	c.T580C	p.W194R	.	.	180	24	188	0	.	139
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159655441	159655441	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FNDC1	NM_032532	exon11	c.C3897A	p.R1299R	.	.	154	15	189	0	.	138
FRG1	2483	bcgsc.ca	37	4	190878596	190878596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FRG1	NM_004477	exon6	c.G476A	p.C159Y	.	.	467	31	492	9	.	90
FRMD8P1	83957	bcgsc.ca	37	X	64771032	64771032	+	RNA	DEL	G	G	-	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	92	19	116	0	.	.
FRMPD2	143162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49392901	49392901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	FRMPD2	NM_001018071	exon19	c.T2383C	p.Y795H	.	.	145	20	139	1	.	153
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46060284	46060284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GABRG1	NM_173536	exon7	c.G866T	p.W289L	.	.	185	39	196	0	.	92
GALNT1	2589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	33267144	33267144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GALNT1	NM_020474	exon5	c.C854T	p.P285L	.	.	133	17	129	0	.	92
GLRA4	441509	ucsc.edu	37	X	102973919	102973919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GLRA4	NM_001172285	exon7	c.C999A	p.C333X	.	.	180	67	189	0	.	108
GOLGA8I	283796	bcgsc.ca	37	15	23261007	23261007	+	RNA	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	492	194	332	2	.	.
GPX1	2876	broad.mit.edu;bcgsc.ca	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	GPX1	.	.	.	.	.	.	56	10	68	1	G|0.333;C|0.667	68
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73617654	73617654	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HCN4	NM_005477	exon5	c.C1722T	p.S574S	.	.	113	76	160	0	.	96
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71007177	71007177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HKDC1	NM_025130	exon9	c.G1093A	p.E365K	.	.	190	51	177	0	.	95
HLA-B	3106	bcgsc.ca	37	6	31322911	31322911	+	Missense_Mutation	SNP	C	C	T	rs1051488	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HLA-B	NM_005514	exon5	c.G985A	p.A329T	.	.	139	6	126	1	T|0.299;G|0.170;C|0.380;A|0.151	90
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74646693	74646693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMGCR	NM_001130996	exon9	c.C860A	p.S287Y	.	.	64	18	88	0	.	227
HMX2	3167	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	124908050	124908050	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HMX2	NM_005519	exon1	c.G156A	p.E52E	.	.	36	6	79	0	.	90
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141440	114141440	+	Missense_Mutation	SNP	C	C	T	rs77459121		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTR2C	NM_000868	exon6	c.C839T	p.P280L	.	.	137	51	153	0	C|0.999;T|0.001	133
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295868	8295868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.G991T	p.A331S	.	.	139	17	121	0	.	91
HTRA3	94031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	8295870	8295870	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HTRA3	NM_053044	exon6	c.C993T	p.A331A	.	.	136	17	121	0	.	91
HYOU1	10525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118924950	118924950	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	HYOU1	NM_001130991	exon9	c.679-2A>G	.	.	.	79	15	86	0	.	90
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	53277365	53277365	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IQSEC2	NM_001111125	exon7	c.G2513A	p.R838Q	.	.	158	11	150	0	.	178
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977917	107977917	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	IRS4	NM_003604	exon1	c.C1658T	p.A553V	.	.	41	8	56	0	.	623
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	314814	314814	+	Silent	SNP	C	C	A	rs140101617	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITFG3	NM_032039	exon13	c.C1452A	p.V484V	.	.	48	12	58	0	C|0.999;T|0.000	90
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48148866	48148866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA3	NM_005501	exon6	c.G943A	p.D315N	.	.	26	7	21	0	.	229
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56092544	56092544	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITGA7	NM_001144996	exon6	c.G960C	p.L320L	.	.	152	26	175	0	.	229
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	93542960	93542960	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ITPK1	NM_001142593	exon3	c.C100T	p.R34X	.	.	164	55	167	0	.	115
KDM5C	8242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53246991	53246991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KDM5C	NM_004187	exon4	c.G509T	p.G170V	.	.	227	43	241	0	.	1272
KIF15	56992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44843455	44843455	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF15	NM_020242	exon13	c.C1498A	p.L500M	.	.	107	23	88	0	.	91
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	104641634	104641634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26A	NM_015656	exon12	c.C2509T	p.R837C	.	.	18	8	77	0	.	24
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245849809	245849809	+	Missense_Mutation	SNP	C	C	T	rs202113373		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF26B	NM_018012	exon12	c.C3524T	p.T1175M	.	.	177	17	134	0	.	25
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	51901739	51901739	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KIF2B	NM_032559	exon1	c.G1345T	p.A449S	.	.	94	16	101	0	.	98
KLK1	3816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51322605	51322605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KLK1	NM_002257	exon5	c.G634A	p.G212S	.	.	79	5	63	0	.	226
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53041619	53041619	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRT2	NM_000423	exon6	c.T1143C	p.T381T	.	.	82	21	91	0	.	92
KRT39	390792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39114975	39114975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_213656	exon7	c.G1354A	p.G452R	.	.	204	43	210	1	.	.
KRT86	3892	broad.mit.edu;bcgsc.ca	37	12	52699526	52699526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRT86	NM_002284	exon6	c.G980A	p.R327H	.	.	224	6	220	0	.	91
KRTAP1-3	81850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39190602	39190602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_030966	exon1	c.T472C	p.C158R	.	.	263	46	294	0	.	.
KRTAP19-1	337882	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31852613	31852613	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP19-1	NM_181607	exon1	c.C24T	p.Y8Y	.	.	171	34	197	1	.	68
KRTAP8-1	337879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32185533	32185533	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	KRTAP8-1	NM_175857	exon1	c.C6G	p.L2L	.	.	173	52	190	0	.	68
LAMA5	3911	bcgsc.ca	37	20	60897487	60897487	+	Missense_Mutation	SNP	C	C	T	rs2274934	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LAMA5	NM_005560	exon47	c.G6184A	p.D2062N	.	.	44	5	51	0	C|0.464;T|0.536	93
LINC00854	100874261	broad.mit.edu	37	17	41381938	41381938	+	RNA	SNP	C	C	G	rs4986161	bycluster;byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	37	4	29	0	C|0.500;G|0.500	.
LOC283922	0	broad.mit.edu	37	16	74366531	74366531	+	RNA	SNP	A	A	C	rs3743922		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	208	5	190	0	.	.
LOC440518	0	ucsc.edu	37	19	22785450	22785450	+	RNA	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	16	4	21	0	.	.
LTB4R	1241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24785243	24785243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LTB4R	NM_181657	exon2	c.G386T	p.R129L	.	.	74	12	68	0	.	522
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	160664981	160664981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	LY75	NM_002349	exon33	c.G4801A	p.G1601R	.	.	104	20	94	0	.	90
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51638377	51638377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MAGED1	NM_001005333	exon4	c.T442C	p.Y148H	.	.	120	19	127	0	.	133
MANEA	79694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	96034461	96034461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MANEA	NM_024641	exon2	c.A146G	p.H49R	.	.	34	11	46	0	.	155
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	168810745	168810745	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MECOM	NM_001105077	exon15	c.2795+1G>T	.	.	.	78	13	43	0	.	853
MIR452	574412	ucsc.edu;mdanderson.org	37	X	151128155	151128155	+	RNA	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	187	26	176	0	.	.
MIR639	693224	ucsc.edu;mdanderson.org	37	19	14640442	14640442	+	RNA	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	242	25	145	0	.	.
MKNK1	8569	broad.mit.edu	37	1	47028362	47028362	+	Missense_Mutation	SNP	C	C	T	rs55791614	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MKNK1	NM_003684	exon11	c.G922A	p.D308N	.	.	163	5	195	0	C|0.996;T|0.004	978
MKRN3	7681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23811328	23811328	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MKRN3	NM_005664	exon1	c.G399A	p.S133S	.	.	51	22	75	1	.	1011
MLH3	27030	hgsc.bcm.edu;bcgsc.ca	37	14	75505047	75505047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLH3	NM_014381	exon6	c.G3639T	p.E1213D	.	.	65	4	64	0	.	228
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860411	151860411	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLL3	NM_170606	exon43	c.G10251A	p.Q3417Q	.	.	230	87	200	0	.	1398
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2257268	2257268	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MLST8	NM_001199174	exon6	c.G495T	p.L165L	.	.	220	87	180	0	.	392
MXRA5	25878	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248325	3248325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MXRA5	NM_015419	exon4	c.A443C	p.N148T	.	.	327	56	362	1	.	136
MYH2	4620	bcgsc.ca	37	17	10448769	10448769	+	Silent	SNP	A	A	T	rs11078850	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYH2	NM_017534	exon5	c.T399A	p.P133P	.	.	123	5	161	0	A|0.586;T|0.414	194
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26409644	26409644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYO3A	NM_017433	exon18	c.A1816T	p.N606Y	.	.	82	27	113	0	.	1007
MYOD1	4654	ucsc.edu;bcgsc.ca	37	11	17742518	17742518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	MYOD1	NM_002478	exon2	c.G700A	p.A234T	.	.	145	70	142	2	.	154
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40103840	40103840	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	N4BP2	NM_018177	exon4	c.T375G	p.S125R	.	.	98	38	117	0	.	602
NMRAL1	57407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4519432	4519432	+	Silent	SNP	C	C	T	rs11557237		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NMRAL1	NM_020677	exon3	c.G75A	p.L25L	.	.	81	36	73	0	.	91
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107799966	107799966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	NRCAM	NM_001037132	exon29	c.C3619T	p.H1207Y	.	.	90	38	89	0	.	156
OR2T10	127069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248756351	248756351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR2T10	NM_001004693	exon1	c.C719T	p.T240I	.	.	312	40	214	1	.	69
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135547	55135547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4A15	NM_001005275	exon1	c.A188T	p.Y63F	.	.	123	17	108	0	.	70
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55371775	55371775	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR4C11	NM_001004700	exon1	c.G75T	p.V25V	.	.	84	15	95	0	.	69
OR5K4	403278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98073262	98073262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR5K4	NM_001005517	exon1	c.T565A	p.C189S	.	.	94	21	79	0	.	68
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56114194	56114194	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	OR8K1	NM_001002907	exon1	c.T680G	p.I227S	.	.	105	51	96	0	.	70
P4HA3	283208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74013475	74013475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	P4HA3	NM_182904	exon3	c.A506G	p.D169G	.	.	123	22	79	1	.	69
PADI1	29943	broad.mit.edu	37	1	17548940	17548940	+	Missense_Mutation	SNP	C	C	T	rs41265071	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PADI1	NM_013358	exon2	c.C248T	p.A83V	.	.	166	6	163	0	C|0.997;T|0.003	68
PARP10	84875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145059302	145059302	+	Missense_Mutation	SNP	C	C	A	rs199611396	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PARP10	NM_032789	exon5	c.G868T	p.A290S	.	.	81	13	75	0	.	526
PCDH7	5099	hgsc.bcm.edu;mdanderson.org	37	4	30726251	30726251	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDH7	NM_032456	exon1	c.C3207T	p.P1069P	.	.	39	12	49	0	.	229
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558833	140558833	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHB8	NM_019120	exon1	c.A1218G	p.T406T	.	.	508	98	533	0	.	131
PCDHGC5	56097	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	5	140871340	140871340	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCDHGC5	NM_032407	exon1	c.T2533A	p.L845M	.	.	119	11	144	0	.	25
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82791801	82791801	+	Silent	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PCLO	NM_014510	exon1	c.G108T	p.A36A	.	.	75	42	110	0	.	29
PDCL2	132954	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	56458269	56458269	+	Splice_Site	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_152401	exon2	c.6+2T>G	.	.	.	144	18	146	2	.	.
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6381970	6381970	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PITPNM3	NM_031220	exon7	c.C674G	p.S225C	.	.	81	36	114	0	.	228
PKD1	5310	hgsc.bcm.edu	37	16	2157970	2157970	+	Silent	SNP	G	G	T	rs184394342	alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PKD1	NM_000296	exon16	c.C6979A	p.R2327R	.	.	53	4	112	0	G|0.999;A|0.001	91
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	110447476	110447476	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PKHD1L1	NM_177531	exon29	c.T3398G	p.V1133G	.	.	120	6	115	0	.	145
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153035892	153035892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon10	c.C1955A	p.A652E	.	.	165	67	181	0	.	130
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153042728	153042728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PLXNB3	NM_001163257	exon31	c.G5062A	p.E1688K	.	.	121	45	137	0	.	130
PPP1R42	286187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	67926750	67926750	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001013626	exon3	c.T207C	p.N69N	.	.	83	11	89	0	.	.
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47269978	47269978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PREX1	NM_020820	exon20	c.G2267A	p.G756D	.	.	63	18	67	0	.	231
PSG11	5680	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	43528932	43528932	+	Missense_Mutation	SNP	C	C	A	rs111739483	byfrequency;alternate_allele	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_002785	exon2	c.G341T	p.R114L	.	.	364	44	292	0	C|0.977;T|0.023	.
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1535964	1535964	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	PTX4	NM_001013658	exon3	c.C1398T	p.C466C	.	.	66	11	58	0	.	90
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144899577	144899577	+	Silent	SNP	T	T	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_078480	exon10	c.A1068T	p.P356P	.	.	187	84	151	0	.	.
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114424158	114424158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001145346	exon1	c.G154A	p.A52T	.	.	398	69	357	0	.	.
RGPD4	285190	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	108488192	108488192	+	Silent	SNP	G	G	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.G3732C	p.G1244G	.	.	508	80	493	0	.	2
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488196	108488196	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3736C	p.T1246P	.	.	527	86	519	1	.	2
RGPD4	285190	ucsc.edu;bcgsc.ca	37	2	108488198	108488198	+	Silent	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RGPD4	NM_182588	exon20	c.A3738C	p.T1246T	.	.	542	85	539	1	.	2
RNASE2	6036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21423958	21423958	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RNASE2	NM_002934	exon2	c.A28G	p.I10V	.	.	142	33	138	0	.	91
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	10468548	10468548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RP1L1	NM_178857	exon4	c.G3060A	p.Q1020Q	.	.	85	40	104	0	.	139
RRP1B	23076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45107710	45107710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	RRP1B	NM_015056	exon13	c.A1455T	p.E485D	.	.	131	25	120	0	.	91
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	76754132	76754132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SALL3	NM_171999	exon2	c.G2141T	p.R714L	.	.	75	17	133	0	.	155
SCNN1A	6337	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6457245	6457245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SCNN1A	NM_001159576	exon12	c.G1981A	p.A661T	.	.	135	63	159	1	.	90
SESN2	83667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28598805	28598805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SESN2	NM_031459	exon4	c.G365A	p.R122H	.	.	51	10	68	0	.	230
SLC22A14	9389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38357904	38357904	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC22A14	NM_004803	exon9	c.C1622A	p.P541H	.	.	125	25	87	0	.	90
SLC39A12	221074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18282170	18282170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC39A12	NM_001145195	exon9	c.G1483A	p.E495K	.	.	178	46	157	1	.	154
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244795	1244795	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SLC6A18	NM_182632	exon11	c.C1569T	p.V523V	.	.	142	33	118	0	.	91
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2076069	2076069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SMG6	NM_017575	exon13	c.G3240C	p.K1080N	.	.	127	57	134	0	.	228
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108367021	108367021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SORCS1	NM_001206572	exon23	c.C3068T	p.A1023V	.	.	78	24	90	0	.	153
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048842	24048842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T155G	p.L52R	.	.	120	37	133	0	.	655
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	24048849	24048849	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SOX5	NM_006940	exon2	c.T148G	p.F50V	.	.	118	33	132	0	.	655
SPATA31D1	389763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84608679	84608679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001001670	exon4	c.C3294A	p.D1098E	.	.	53	8	103	1	.	.
SPICE1	152185	hgsc.bcm.edu	37	3	113212077	113212077	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SPICE1	NM_144718	exon6	c.T468C	p.F156F	.	.	98	4	104	0	.	70
SPNS3	201305	hgsc.bcm.edu	37	17	4348361	4348361	+	Silent	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SPNS3	NM_182538	exon3	c.G300T	p.V100V	.	.	113	5	156	0	.	153
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	124	63	91	0	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	121	24	125	0	A|0.010;C|0.001;T|0.988	45
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123195634	123195634	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STAG2	NM_001042749	exon17	c.G1548A	p.R516R	.	.	138	22	152	0	.	134
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70644911	70644911	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	STOX1	NM_152709	exon3	c.C1359T	p.P453P	.	.	112	16	101	0	.	92
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152768757	152768757	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	SYNE1	NM_033071	exon29	c.G3526C	p.E1176Q	.	.	36	6	52	0	.	607
TENC1	23371	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53448150	53448150	+	Silent	SNP	C	C	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TENC1	NM_015319	exon7	c.C477G	p.P159P	.	.	48	4	144	0	.	92
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56700253	56700253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TEX14	NM_198393	exon4	c.C372A	p.N124K	.	.	129	56	135	0	.	810
TMEM132E	124842	broad.mit.edu;mdanderson.org	37	17	32964431	32964431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM132E	NM_207313	exon10	c.T2135C	p.L712P	.	.	68	8	88	3	.	68
TMEM176A	55365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150501448	150501448	+	Splice_Site	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM176A	NM_018487	exon6	c.556-2A>G	.	.	.	112	21	104	0	.	92
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	63212687	63212687	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TMEM26	NM_178505	exon1	c.G153A	p.A51A	.	.	212	27	207	0	.	90
TNXB	7148	bcgsc.ca	37	6	32032743	32032743	+	Silent	SNP	G	G	A	rs204883	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TNXB	NM_019105	exon19	c.C6696T	p.D2232D	.	.	117	5	125	1	G|0.570;A|0.430	90
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7574035	7574035	+	Splice_Site	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	TP53,NS,haematopoietic_neoplasm,0	TP53	NM_000546	exon11	c.994-2A>G	.	.	.	82	35	110	0	.	70225
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140093940	140093940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TPRN	NM_001128228	exon1	c.C1224A	p.D408E	.	.	75	33	102	0	.	90
TPRX1	284355	hgsc.bcm.edu;ucsc.edu	37	19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	rs112842028		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TPRX1	NM_198479	exon2	c.C622T	p.P208S	.	.	38	11	53	0	G|0.500;A|0.500	90
TPRX1	284355	ucsc.edu	37	19	48305650	48305650	+	Silent	SNP	C	C	T	rs112397458	bycluster;byfrequency;by1000genomes	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TPRX1	NM_198479	exon2	c.G618A	p.P206P	.	.	43	17	52	0	C|0.912;T|0.088	90
TRIO	7204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14374421	14374421	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRIO	NM_007118	exon19	c.G3300A	p.T1100T	.	.	149	41	130	2	.	562
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122836092	122836092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TRPC3	NM_001130698	exon4	c.C1184T	p.A395V	.	.	69	13	104	0	.	92
TSKU	25987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76507685	76507685	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TSKU	NM_015516	exon2	c.C1025A	p.T342N	.	.	38	11	55	0	.	90
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43220563	43220563	+	Silent	SNP	G	G	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTBK1	NM_032538	exon3	c.G195A	p.E65E	.	.	62	13	77	0	.	353
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117644020	117644020	+	Silent	SNP	A	A	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTF2	NM_003594	exon23	c.A3363G	p.T1121T	.	.	24	8	21	0	.	91
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	33370119	33370119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	NM_001265581	exon2	c.A13G	p.S5G	.	.	38	18	39	0	.	.
TTLL5	23093	broad.mit.edu;bcgsc.ca	37	14	76147887	76147887	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTLL5	NM_015072	exon4	c.182-1G>T	.	.	.	47	4	56	0	.	92
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179560835	179560835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	TTN	NM_001267550	exon114	c.G30964A	p.D10322N	.	.	116	38	140	0	.	636
UGT1A8	54576	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	234526864	234526864	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	UGT1A8	NM_019076	exon1	c.G511T	p.G171X	.	.	107	14	110	1	.	27
VIM	7431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	17271663	17271663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VIM	NM_003380	exon2	c.A242T	p.Q81L	.	.	98	34	107	0	.	291
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42454640	42454641	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	VPS39	NM_015289	exon22	c.2215_2216insC	p.S739fs	.	.	103	35	135	0	.	229
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	1630783	1630783	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	WDR81	NM_001163809	exon1	c.C2530T	p.Q844X	.	.	66	26	109	0	.	91
XIAP	331	bcgsc.ca	37	X	123034511	123034511	+	Missense_Mutation	SNP	A	A	C	rs5956583	byfrequency	TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	XIAP	NM_001204401	exon6	c.A1268C	p.Q423P	.	.	550	16	572	6	A|0.624;0|0.022	1084
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64813854	64813854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	XPOT	NM_007235	exon7	c.C494T	p.A165V	.	.	42	5	53	0	.	652
ZNF528	84436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52919064	52919064	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF528	NM_032423	exon7	c.C959A	p.T320N	.	.	90	7	89	0	.	92
ZNF835	90485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57175244	57175244	+	Silent	SNP	C	C	T	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	ZNF835	NM_001005850	exon2	c.G1323A	p.T441T	.	.	35	10	60	0	.	72
CTD-2089O24.1	0	bcgsc.ca	37	5	110286458	110286459	+	RNA	DNP	GA	GA	TT	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	.	.	.	.	.	.	.	.	
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	82320836	82320837	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-G3-A5SM-01A-12D-A28X-10	TCGA-G3-A5SM-10A-01D-A28X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e2dae934-c940-4712-976d-68a9cce2b2c2	e6086fb4-e933-4934-8437-5c592d7bf553	.	.	.	.	.	p.LV254FL	.	.	.	.	.	.	.	
