Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215813394	215813394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCA12	NM_173076	exon47	c.G7030A	p.D2344N	.	.	159	59	140	0	.	99
ABCB5	340273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20685646	20685646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCB5	NM_001163941	exon9	c.T866A	p.V289E	.	.	165	42	117	1	.	158
ABCC11	85320	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48234210	48234210	+	Missense_Mutation	SNP	C	C	T	rs16945928	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ABCC11	NM_033151	exon14	c.G2059A	p.V687I	.	.	60	27	76	0	C|0.988;T|0.012	95
ADCY3	109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25141567	25141567	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ADCY3	NM_004036	exon1	c.C290A	p.A97D	.	.	138	52	147	0	.	94
ALDH7A1	501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	125896800	125896800	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ALDH7A1	NM_001202404	exon10	c.A969G	p.E323E	.	.	505	172	473	0	.	227
ANKRD36BP2	645784	broad.mit.edu;ucsc.edu	37	2	89104276	89104276	+	RNA	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	17	7	11	0	.	.
ANKRD55	79722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55472050	55472050	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ANKRD55	NM_024669	exon4	c.T241C	p.L81L	.	.	100	41	76	0	.	91
ANO2	57101	ucsc.edu	37	12	5916483	5916483	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ANO2	NM_020373	exon8	c.A932G	p.H311R	.	.	37	4	46	0	.	139
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201531449	201531449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	AOX1	NM_001159	exon32	c.A3583G	p.I1195V	.	.	83	39	73	0	.	96
API5	8539	bcgsc.ca	37	11	43364000	43364000	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	API5	NM_006595	exon14	c.A1510G	p.K504E	.	.	76	6	73	0	.	136
ASS1	445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133327679	133327679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ASS1	NM_054012	exon2	c.G64T	p.V22L	.	.	53	26	68	0	.	91
ATF6B	1388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32084267	32084267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ATF6B	NM_004381	exon17	c.G1872A	p.M624I	.	.	175	54	61	0	.	90
BLVRA	644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	43846653	43846653	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	BLVRA	NM_001253823	exon9	c.C710G	p.S237C	.	.	72	26	56	0	.	91
BTBD18	643376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57513362	57513362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001145101	exon3	c.G383A	p.G128E	.	.	108	43	100	0	.	.
C19orf26	255057	broad.mit.edu	37	19	1233530	1233530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	C19orf26	NM_152769	exon8	c.A874C	p.T292P	.	.	72	22	88	17	.	90
C8orf86	389649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	38386043	38386043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	C8orf86	NM_207412	exon1	c.A113G	p.E38G	.	.	47	32	74	0	.	90
C9orf89	84270	ucsc.edu	37	9	95872978	95872978	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	C9orf89	NM_032310	exon3	c.C279T	p.S93S	.	.	33	4	45	0	.	90
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	67699851	67699851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CAND1	NM_018448	exon10	c.A2403C	p.K801N	.	.	80	38	63	0	.	516
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	180359906	180359906	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC39	NM_181426	exon13	c.T1749A	p.L583L	.	.	102	42	83	0	.	72
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	132290493	132290493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74A	NM_001258305	exon5	c.G740A	p.R247K	.	.	218	42	260	0	.	69
CCDC74B	91409	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130897613	130897613	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CCDC74B	NM_207310	exon6	c.G933A	p.E311E	.	.	75	28	74	1	.	90
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34057783	34057783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CEP250	NM_007186	exon10	c.A920G	p.K307R	.	.	85	38	66	0	.	27
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57731023	57731023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CGNL1	NM_001252335	exon3	c.C826T	p.L276F	.	.	237	58	196	0	.	100
CLSTN2	64084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140281700	140281700	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CLSTN2	NM_022131	exon14	c.T2260G	p.Y754D	.	.	121	47	116	0	.	157
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98996755	98996755	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNGA3	NM_001298	exon4	c.C333A	p.S111S	.	.	90	38	115	0	.	96
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	1189706	1189706	+	Nonsense_Mutation	SNP	G	G	A	rs144055237	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CNTN6	NM_014461	exon2	c.G14A	p.W5X	.	.	171	62	122	0	G|1.000;C|0.000	345
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103548452	103548452	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL11A1	NM_001854	exon2	c.C183G	p.C61W	.	.	62	25	47	0	.	586
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94027070	94027070	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	COL1A2	NM_000089	exon2	c.G81A	p.E27E	.	.	301	83	148	0	.	521
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130129336	130129336	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_153264	exon20	c.G4630T	p.V1544L	.	.	129	57	98	0	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266100	41266100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	CTNNB1,gallbladder,other,-1	CTNNB1	NM_001098209	exon3	c.T97C	p.S33P	.	.	154	70	183	0	.	24361
CUL9	23113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155007	43155007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	CUL9	NM_015089	exon6	c.C1411T	p.P471S	.	.	204	40	63	1	.	529
DCPS	28960	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	126201385	126201385	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DCPS	NM_014026	exon3	c.G462A	p.T154T	.	.	45	25	55	1	.	90
DGCR14	8220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19124884	19124884	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DGCR14	NM_022719	exon8	c.A987G	p.E329E	.	.	126	52	148	0	.	116
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	61525548	61525548	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DIDO1	NM_001193369	exon13	c.2573-2A>T	.	.	.	38	17	41	0	.	96
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52434364	52434364	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DNAH1	NM_015512	exon78	c.T12700A	p.S4234T	.	.	78	34	87	0	.	67
DOCK3	1795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51412013	51412013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DOCK3	NM_004947	exon50	c.G5407A	p.G1803R	.	.	164	72	155	1	.	22
DOPEY1	23033	ucsc.edu	37	6	83828695	83828695	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DOPEY1	NM_015018	exon8	c.C869T	p.A290V	.	.	45	5	51	0	.	155
DSPP	1834	hgsc.bcm.edu	37	4	88537080	88537088	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	DSPP	NM_014208	exon5	c.3266_3274del	p.1089_1092del	.	.	86	20	76	0	.	90
EIF1	10209	ucsc.edu	37	17	39846437	39846437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	EIF1	NM_005801	exon3	c.T293C	p.V98A	.	.	36	4	29	0	.	90
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108381599	108381599	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	EXPH5	NM_015065	exon6	c.G4635A	p.Q1545Q	.	.	89	43	89	0	.	95
FAM124A	220108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	51854702	51854702	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM124A	NM_145019	exon5	c.C1059A	p.S353R	.	.	44	13	49	0	.	90
FAM208A	23272	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56681127	56681127	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001112736	exon14	c.C1638A	p.S546R	.	.	158	69	129	1	.	.
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190067609	190067609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM5C	NM_199051	exon8	c.C1840A	p.L614M	.	.	73	21	67	0	.	228
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	37580989	37580998	+	Frame_Shift_Del	DEL	CAAAGAGCGG	CAAAGAGCGG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CAAAGAGCGG	CAAAGAGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAM83D	NM_030919	exon4	c.1674_1683del	p.558_561del	.	.	91	16	125	0	.	93
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10136948	10136948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FANCD2	NM_001018115	exon41	c.G4028A	p.G1343E	.	.	117	58	110	0	.	229
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92531036	92531036	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FAT3	NM_001008781	exon9	c.C4857T	p.V1619V	.	.	174	75	182	0	.	73
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34156492	34156492	+	Missense_Mutation	SNP	C	C	A	rs147225084	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FHOD3	NM_025135	exon6	c.C590A	p.T197N	.	.	86	32	82	0	C|1.000;T|0.000	139
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152282595	152282595	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLG	NM_002016	exon3	c.C4767A	p.R1589R	.	.	142	39	136	0	.	106
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089139	86089139	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FLRT2	NM_013231	exon2	c.C1281A	p.L427L	.	.	137	58	171	0	.	94
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359765	33359765	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T321C	p.S107S	.	.	166	44	111	0	.	23
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33359984	33359984	+	Silent	SNP	A	A	T	rs184741064	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FMN1	NM_001103184	exon1	c.T102A	p.S34S	.	.	127	39	79	0	A|0.999;G|0.000	23
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79373018	79373018	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FRAS1	NM_025074	exon46	c.G6556C	p.D2186H	.	.	55	20	56	0	.	68
FRG1B	284802	bcgsc.ca	37	20	29623214	29623214	+	RNA	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	FRG1B	.	.	.	.	.	.	404	39	342	10	.	22
GIMAP8	155038	broad.mit.edu	37	7	150164103	150164103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GIMAP8	NM_175571	exon2	c.T317C	p.F106S	.	.	105	4	80	0	.	95
GLDC	2731	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6604681	6604681	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GLDC	NM_000170	exon7	c.T965A	p.V322E	.	.	253	69	113	1	.	92
GPR162	27239	ucsc.edu	37	12	6934724	6934724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GPR162	NM_019858	exon3	c.G943A	p.A315T	.	.	57	5	37	0	.	92
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	89325566	89325566	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	GTF2B	NM_001514	exon5	c.A534G	p.K178K	.	.	68	28	50	0	.	154
HAUS5	23354	ucsc.edu	37	19	36109518	36109518	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HAUS5	NM_015302	exon12	c.C933T	p.L311L	.	.	43	4	50	0	.	68
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50688856	50688856	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HDAC10	NM_032019	exon3	c.G291T	p.P97P	.	.	57	36	68	0	.	226
HIST2H2BE	8349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	149858163	149858163	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HIST2H2BE	NM_003528	exon1	c.G28T	p.A10S	.	.	192	58	125	1	.	69
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	3241784	3241784	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	HTT	NM_002111	exon67	c.T9427A	p.X3143R	.	.	81	44	88	0	.	281
IFNA22P	3453	ucsc.edu	37	9	21278527	21278527	+	RNA	SNP	G	G	A	rs140046971	by1000genomes	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	18	4	10	0	G|0.997;A|0.003	.
IRS4	8471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107977380	107977380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	IRS4	NM_003604	exon1	c.A2195G	p.H732R	.	.	85	78	115	0	.	623
ITM2A	9452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	78618461	78618461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ITM2A	NM_004867	exon3	c.C419G	p.A140G	.	.	157	140	140	1	.	131
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37432206	37432207	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001144990	exon4	c.370_371insA	p.E124fs	.	.	63	28	60	0	.	.
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21334479	21334479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	KLHL9	NM_018847	exon1	c.A380G	p.E127G	.	.	116	46	107	0	.	94
KRTAP12-3	386683	ucsc.edu	37	21	46077930	46077930	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	KRTAP12-3	NM_198697	exon1	c.C34G	p.P12A	.	.	44	4	43	0	.	68
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60892042	60892042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMA5	NM_005560	exon56	c.A7549G	p.R2517G	.	.	32	17	23	0	.	93
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183111767	183111767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LAMC1	NM_002293	exon28	c.G4672A	p.V1558M	.	.	125	37	71	0	.	252
LCK	3932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32740006	32740006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCK	NM_005356	exon2	c.C76G	p.P26A	.	.	95	46	79	0	.	1378
LCTL	197021	broad.mit.edu;bcgsc.ca	37	15	66850163	66850163	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LCTL	NM_207338	exon8	c.C819G	p.P273P	.	.	204	10	113	0	.	92
LOC100505782	0	broad.mit.edu;bcgsc.ca	37	17	39563654	39563655	+	RNA	INS	-	-	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	39	16	55	0	.	.
LOC654433	0	ucsc.edu	37	2	113999107	113999107	+	RNA	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	24	4	31	0	.	.
LTBP3	4054	ucsc.edu	37	11	65319516	65319516	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	LTBP3	NM_001130144	exon8	c.G1458A	p.G486G	.	.	54	5	62	0	.	91
MAGEA6	4105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	151870008	151870008	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAGEA6	NM_005363	exon3	c.G698T	p.G233V	.	.	222	10	134	0	.	90
MAP6D1	79929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	183543020	183543020	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAP6D1	NM_024871	exon1	c.G316A	p.A106T	.	.	23	10	30	0	.	90
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	87024360	87024360	+	Missense_Mutation	SNP	G	G	A	rs138883015		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MAPK10	NM_002753	exon6	c.C404T	p.T135M	.	.	50	19	43	0	G|1.000;A|0.000	1402
MDN1	23195	bcgsc.ca	37	6	90442354	90442354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MDN1	NM_014611	exon34	c.A4864G	p.K1622E	.	.	109	6	181	0	.	100
MECOM	2122	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168810848	168810848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MECOM	NM_004991	exon14	c.G3062C	p.G1021A	.	.	62	6	45	1	.	853
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135095832	135095832	+	Silent	SNP	G	G	A	rs138350444		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MGAT5	NM_002410	exon6	c.G648A	p.A216A	.	.	228	103	226	0	G|0.999;A|0.001	93
MIR155HG	114614	ucsc.edu;bcgsc.ca	37	21	26946433	26946433	+	RNA	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	33	18	19	0	.	.
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31328358	31328358	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MORC2	NM_014941	exon25	c.A2643G	p.I881M	.	.	54	30	69	0	.	92
MTHFD1	4522	broad.mit.edu;bcgsc.ca	37	14	64914955	64914955	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MTHFD1	NM_005956	exon23	c.A2199G	p.K733K	.	.	98	6	74	0	.	92
MUC16	94025	broad.mit.edu	37	19	9047029	9047029	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MUC16	NM_024690	exon5	c.A34602G	p.S11534S	.	.	55	5	61	0	.	566
MUC2	4583	bcgsc.ca;mdanderson.org	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MUC2	NM_002457	exon30	c.G4729A	p.G1577S	.	.	20	5	37	1	.	90
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	42338684	42338684	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYBL2	NM_002466	exon10	c.C1587T	p.Y529Y	.	.	71	16	103	0	.	415
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10399270	10399270	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon35	c.C5166G	p.T1722T	.	.	59	28	63	0	.	171
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408340	10408340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	MYH1	NM_005963	exon22	c.G2478A	p.M826I	.	.	67	31	85	0	.	171
NCOA6	23054	broad.mit.edu;ucsc.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NCOA6	NM_014071	exon7	c.G807A	p.Q269Q	.	.	38	4	57	0	.	292
NCOR2	9612	ucsc.edu	37	12	124870344	124870344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NCOR2	NM_006312	exon19	c.T1966C	p.Y656H	.	.	42	4	34	0	.	229
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75590868	75590868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NEK9	NM_033116	exon2	c.G278A	p.R93H	.	.	134	13	131	0	.	359
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32166274	32166274	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NOTCH4	NM_004557	exon26	c.G4680T	p.A1560A	.	.	176	67	99	0	.	1321
NPEPPS	9520	ucsc.edu	37	17	45663050	45663050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NPEPPS	NM_006310	exon6	c.G833A	p.G278E	.	.	32	4	40	0	.	90
NSUN3	63899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93802963	93802963	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NSUN3	NM_022072	exon3	c.A135G	p.T45T	.	.	117	48	126	0	.	91
NUAK2	81788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205273292	205273292	+	Silent	SNP	C	C	T	rs149020592	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	NUAK2	NM_030952	exon7	c.G1173A	p.T391T	.	.	107	32	90	0	C|0.999;T|0.001	391
OR2W5	441932	hgsc.bcm.edu;bcgsc.ca	37	1	247655247	247655247	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR2W5	NM_001004698	exon1	c.818delT	p.V273fs	.	.	301	101	180	0	.	115
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	247875237	247875237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR6F1	NM_001005286	exon1	c.T821C	p.V274A	.	.	93	30	69	0	.	68
OR9Q2	219957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57958110	57958110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	OR9Q2	NM_001005283	exon1	c.C148T	p.R50C	.	.	91	44	126	0	.	115
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133197658	133197658	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	P2RX2	NM_170683	exon8	c.G846A	p.K282K	.	.	42	24	50	0	.	68
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90690655	90690655	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PABPC5	NM_080832	exon2	c.C79T	p.P27S	.	.	62	15	61	0	.	110
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3893207	3893207	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PANK2	NM_153638	exon4	c.G1338A	p.V446V	.	.	121	36	77	0	.	115
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52598201	52598201	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PBRM1	NM_018313	exon24	c.C3665T	p.T1222I	.	.	70	31	79	0	.	575
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145748546	145748546	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZK1	NM_002614	exon4	c.A419G	p.K140R	.	.	467	268	284	0	.	90
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	41949558	41949558	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PDZRN4	NM_001164595	exon7	c.T1361A	p.L454X	.	.	71	31	72	0	.	296
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61258660	61258660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PEX13	NM_002618	exon2	c.A199G	p.S67G	.	.	92	31	78	0	.	91
PHGDH	26227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120284487	120284487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PHGDH	NM_006623	exon10	c.C1176A	p.N392K	.	.	43	15	50	0	.	91
PHGR1	644844	bcgsc.ca	37	15	40648358	40648358	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001145643	exon3	c.103delC	p.P35fs	.	.	135	41	102	1	.	.
PIGH	5283	ucsc.edu	37	14	68056867	68056867	+	Missense_Mutation	SNP	C	C	T	rs199909748	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PIGH	NM_004569	exon4	c.G497A	p.C166Y	.	.	43	4	39	0	C|0.999;G|0.000	227
PIGW	284098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	34894023	34894034	+	In_Frame_Del	DEL	AAGTAAATGTAG	AAGTAAATGTAG	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	AAGTAAATGTAG	AAGTAAATGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PIGW	NM_178517	exon2	c.1073_1084del	p.358_362del	.	.	53	12	53	0	.	226
PINK1	65018	broad.mit.edu	37	1	20975606	20975606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PINK1	NM_032409	exon7	c.G1370A	p.G457D	.	.	124	6	107	0	.	380
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526271	159526271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PKP4	NM_001005476	exon17	c.G2768A	p.G923D	.	.	186	83	224	0	.	97
PLCG1	5335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39792440	39792440	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLCG1	NM_182811	exon10	c.T977C	p.L326P	.	.	82	39	73	0	.	911
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131829964	131829964	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PLXNA4	NM_020911	exon29	c.C5139A	p.I1713I	.	.	195	44	136	0	.	91
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54763785	54763785	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPAP2A	NM_176895	exon3	c.G406A	p.D136N	.	.	76	31	83	0	.	92
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	113558467	113558467	+	Silent	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPP1R3A	NM_002711	exon1	c.T585A	p.V195V	.	.	126	39	75	0	.	832
PPP2CA	5515	ucsc.edu	37	5	133561530	133561530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PPP2CA	NM_002715	exon1	c.A23T	p.K8M	.	.	30	4	30	0	.	1085
PRDM8	56978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	81123282	81123282	+	Silent	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRDM8	NM_001099403	exon4	c.C666A	p.G222G	.	.	154	67	213	0	.	91
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	42858275	42858275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRICKLE1	NM_001144882	exon7	c.C1561G	p.L521V	.	.	108	47	89	0	.	518
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47192900	47192900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRKD2	NM_016457	exon14	c.A1865T	p.K622I	.	.	103	47	128	0	.	759
PRMT10	90826	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148575293	148575293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRMT10	NM_138364	exon9	c.A1755T	p.L585F	.	.	148	69	148	2	.	91
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27222637	27222637	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PRSS16	NM_005865	exon10	c.T1316C	p.V439A	.	.	181	63	55	0	.	94
PSG3	5671	broad.mit.edu;mdanderson.org	37	19	43234066	43234066	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSG3	NM_021016	exon4	c.C852A	p.P284P	.	.	26	14	31	0	.	92
PSMB7	5695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	127174695	127174695	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	PSMB7	NM_002799	exon4	c.C331G	p.L111V	.	.	109	54	85	0	.	90
PTEN	5728	hgsc.bcm.edu	37	10	89653856	89653857	+	Nonsense_Mutation	INS	-	-	ATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	PTEN,NS,malignant_melanoma,0	PTEN	NM_000314	exon2	c.154_155insATGTAGTAAGGTAAGAATGCTTTGATTTTCTATTTCAA	p.D52_V53delinsDVVRX	.	.	61	0	51	0	.	17735
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113785076	113785076	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	QTRTD1	NM_001256835	exon3	c.G238A	p.A80T	.	.	59	27	50	0	.	91
RAB22A	57403	bcgsc.ca	37	20	56934701	56934701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	RAB22A	NM_020673	exon7	c.G527T	p.G176V	.	.	86	6	77	0	.	227
RHPN2	85415	mdanderson.org	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	RHPN2	NM_033103	exon3	c.G217A	p.V73M	.	.	9	3	13	0	.	516
RNR2	6053	broad.mit.edu	37	MT	2492	2492	+	RNA	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	81	63	41	0	.	.
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11348447	11348447	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ROCK2	NM_004850	exon19	c.A2330T	p.E777V	.	.	49	18	38	0	.	546
SAA2	6289	ucsc.edu	37	11	18266989	18266989	+	Missense_Mutation	SNP	T	T	C	rs202101890	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SAA2	NM_030754	exon4	c.A304G	p.K102E	.	.	64	1	78	0	T|0.997;C|0.003	514
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51173435	51173435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SALL1	NM_002968	exon2	c.A2698G	p.N900D	.	.	65	25	67	0	.	98
SEC31A	22872	ucsc.edu	37	4	83784486	83784486	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SEC31A	NM_001077206	exon12	c.A1494G	p.E498E	.	.	39	4	35	0	.	268
SENP7	57337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101058948	101058948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SENP7	NM_020654	exon16	c.T2348A	p.F783Y	.	.	293	116	258	0	.	661
SERTAD4-AS1	574036	broad.mit.edu;ucsc.edu	37	1	210404870	210404870	+	RNA	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	22	7	10	0	.	.
SETD2	29072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47164905	47164905	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SETD2	NM_014159	exon3	c.T1221C	p.S407S	.	.	110	56	109	2	.	1273
SIRPB1	10326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1551500	1551500	+	Silent	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SIRPB1	NM_006065	exon4	c.C1035G	p.A345A	.	.	107	34	70	1	.	91
SLC14A2	8170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43223109	43223109	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC14A2	NM_001242692	exon10	c.C1139T	p.A380V	.	.	99	41	72	1	.	93
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	4544613	4544613	+	Silent	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLC1A1	NM_004170	exon2	c.T138C	p.T46T	.	.	204	51	137	0	.	514
SLC35G6	643664	ucsc.edu	37	17	7386234	7386234	+	Missense_Mutation	SNP	G	G	A	rs200251320	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001102614	exon2	c.G931A	p.V311M	.	.	80	15	56	3	G|0.793;A|0.207	.
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	33769276	33769276	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SLFN13	NM_144682	exon5	c.G1228T	p.E410X	.	.	43	19	41	0	.	91
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	67358566	67358566	+	Missense_Mutation	SNP	G	G	T	rs191612061	by1000genomes	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SMAD3	NM_005902	exon1	c.G74T	p.G25V	.	.	89	27	87	0	G|0.999;T|0.000	904
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	36508355	36508355	+	Silent	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SOCS7	NM_014598	exon1	c.C228T	p.V76V	.	.	38	12	28	0	.	227
SP140	11262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231090583	231090583	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP140	NM_007237	exon1	c.G24A	p.G8G	.	.	100	38	72	1	.	90
SP3	6670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	174820558	174820558	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SP3	NM_003111	exon4	c.682delA	p.I228fs	.	.	63	32	72	0	.	227
SPI1	6688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47381480	47381480	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SPI1	NM_001080547	exon3	c.A257G	p.Y86C	.	.	28	11	25	0	.	226
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	109	59	81	1	A|0.000;C|0.697;T|0.303	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	111	26	107	2	A|0.010;C|0.001;T|0.988	45
SSMEM1	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129856208	129856208	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_145268	exon3	c.G633A	p.A211A	.	.	381	106	219	2	.	.
SUV420H1	51111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67953257	67953257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	SUV420H1	NM_017635	exon3	c.T299G	p.M100R	.	.	98	38	70	0	.	228
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20876328	20876328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TEP1	NM_007110	exon2	c.A271C	p.M91L	.	.	182	75	173	0	.	95
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5352548	5352548	+	Silent	SNP	T	T	G	rs112615228	alternate_allele	TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TNRC18	NM_001080495	exon27	c.A7974C	p.S2658S	.	.	30	13	32	0	T|0.500;A|0.500	46
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23545860	23545860	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TRA2A	NM_013293	exon6	c.G667C	p.G223R	.	.	116	40	76	0	.	91
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31768705	31768705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TSHZ3	NM_020856	exon2	c.G1994A	p.R665H	.	.	44	18	65	0	.	232
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231096999	231096999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTC13	NM_001122835	exon2	c.T322G	p.S108A	.	.	106	27	67	0	.	92
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	33361419	33361419	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_001265581	exon5	c.T962A	p.I321N	.	.	47	39	87	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179484523	179484523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TTN	NM_001267550	exon250	c.G46521T	p.K15507N	.	.	77	40	62	0	.	636
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5442825	5442825	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TUBAL3	NM_024803	exon2	c.T229A	p.L77M	.	.	71	30	67	0	.	91
TXNL1	9352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	54285333	54285333	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	TXNL1	NM_004786	exon4	c.A394G	p.K132E	.	.	51	23	47	0	.	90
TYW1B	441250	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	72277659	72277659	+	RNA	SNP	C	C	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	133	37	108	0	.	.
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118245829	118245829	+	Silent	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBE4A	NM_004788	exon9	c.A1356G	p.L452L	.	.	111	53	91	0	.	229
UBXN7	26043	hgsc.bcm.edu;broad.mit.edu	37	3	196159225	196159226	+	In_Frame_Ins	INS	-	-	CCC	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	UBXN7	NM_015562	exon1	c.46_47insGGG	p.L16delinsGL	.	.	151	57	154	0	.	71
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75276369	75276369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP54	NM_152586	exon18	c.C3815G	p.S1272C	.	.	70	24	57	0	.	721
USP6	9098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	5072174	5072174	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	USP6	NM_004505	exon27	c.A3341G	p.D1114G	.	.	188	88	218	1	.	662
VPS25	84313	ucsc.edu	37	17	40927397	40927397	+	Splice_Site	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	VPS25	NM_032353	exon4	c.254-2A>T	.	.	.	37	4	41	0	.	90
VWA5B2	90113	broad.mit.edu	37	3	183951124	183951124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	NM_138345	exon3	c.A469C	p.T157P	.	.	52	20	39	11	.	.
VWC2	375567	ucsc.edu	37	7	49842436	49842436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	VWC2	NM_198570	exon3	c.G826T	p.G276C	.	.	42	4	59	0	.	514
WASH3P	374666	broad.mit.edu	37	15	102516473	102516473	+	RNA	SNP	G	G	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	285	23	228	0	.	.
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102239757	102239757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	WNT8B	NM_003393	exon3	c.G229A	p.G77R	.	.	36	16	41	0	.	625
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75230510	75230510	+	Silent	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	YLPM1	NM_019589	exon1	c.G318T	p.P106P	.	.	45	15	38	0	.	71
ZBTB43	23099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	129595723	129595723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB43	NM_001135776	exon2	c.A935T	p.D312V	.	.	56	18	51	0	.	91
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37440805	37440805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZBTB5	NM_014872	exon2	c.C1744A	p.P582T	.	.	71	36	70	0	.	92
ZDHHC20	253832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	21974596	21974597	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC20	NM_153251	exon7	c.510_511insT	p.F170fs	.	.	405	177	332	0	.	23
ZDHHC23	254887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113667674	113667674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZDHHC23	NM_173570	exon2	c.C25T	p.P9S	.	.	65	29	48	0	.	92
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	72017346	72017346	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZFC3H1	NM_144982	exon24	c.T4538G	p.V1513G	.	.	96	48	61	0	.	138
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62340049	62340049	+	Silent	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZGPAT	NM_032527	exon2	c.G117A	p.L39L	.	.	41	15	43	0	.	90
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43306248	43306248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF318	NM_014345	exon10	c.A5488C	p.M1830L	.	.	272	61	136	0	.	157
ZNF331	55422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54080362	54080362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF331	NM_001253801	exon5	c.G548T	p.G183V	.	.	100	51	113	0	.	663
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57839129	57839129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF543	NM_213598	exon4	c.A299G	p.E100G	.	.	220	46	239	0	.	92
ZNF716	441234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	57529339	57529339	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF716	NM_001159279	exon4	c.T1172A	p.L391X	.	.	73	33	78	0	.	24
ZNF7	7553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	146067786	146067786	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZNF7	NM_003416	exon5	c.C1294T	p.Q432X	.	.	59	20	36	0	.	94
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	58549467	58549467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZSCAN1	NM_182572	exon3	c.G263A	p.G88D	.	.	37	21	19	0	.	92
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116972883	116972883	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	ZUFSP	NM_145062	exon7	c.A1168T	p.I390F	.	.	51	46	29	0	.	69
C12orf68	387856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48578199	48578200	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.Q99K	.	.	.	.	.	.	.	
ATP8A2	51761	hgsc.bcm.edu;bcgsc.ca	37	13	26273415	26273416	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.L773F	.	.	.	.	.	.	.	
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186839647	186839648	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.ML38II	.	.	.	.	.	.	.	
POTEI	653269	bcgsc.ca	37	2	131266599	131266600	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.P70Q	.	.	.	.	.	.	.	
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151687721	151687722	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.R160L	.	.	.	.	.	.	.	
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	7103697	7103698	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	p.C813D	.	.	.	.	.	.	.	
MYO5BP3	441442	bcgsc.ca	37	9	68357396	68357397	+	RNA	DNP	GG	GG	TT	novel		TCGA-G3-A6UC-01A-21D-A33K-10	TCGA-G3-A6UC-10A-01D-A33K-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ec3c8a89-d074-4f74-afca-6f67a8fb7ce4	fe550293-61ff-43cb-aace-8ff6e6889a33	.	.	.	.	.	.	.	.	.	.	.	.	.	
