Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79094718	79094718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AATK	NM_001080395	exon11	c.G3018C	p.E1006D	.	.	71	21	64	0	.	933
ACAT2	39	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160197285	160197285	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ACAT2	NM_005891	exon6	c.C738T	p.V246V	.	.	62	15	90	0	.	91
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39506032	39506032	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ADAM18	NM_014237	exon12	c.T1216A	p.C406S	.	.	65	34	134	1	.	228
ADAMTS12	81792	broad.mit.edu	37	5	33630943	33630943	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ADAMTS12	NM_030955	exon13	c.G1964C	p.G655A	.	.	182	6	228	0	.	232
AGPAT1	10554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32138234	32138234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AGPAT1	NM_006411	exon4	c.T478C	p.S160P	.	.	37	15	39	0	.	90
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	427999	427999	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AHRR	NM_020731	exon9	c.G852A	p.P284P	.	.	130	20	93	0	.	225
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	106967133	106967133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AIM1	NM_001624	exon2	c.T826C	p.F276L	.	.	100	35	138	0	.	139
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34005903	34005903	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AMACR	NM_014324	exon2	c.T349G	p.C117G	.	.	32	5	37	0	.	90
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	112550033	112550033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANAPC1	NM_022662	exon38	c.C4618T	p.R1540C	.	.	389	125	521	1	.	228
ANKRD36B	57730	bcgsc.ca;mdanderson.org	37	2	98154646	98154646	+	Missense_Mutation	SNP	C	C	G	rs2258816	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_025190	exon32	c.G2074C	p.G692R	.	.	196	41	244	1	.	.
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	428795	428795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ANO9	NM_001012302	exon12	c.C947T	p.P316L	.	.	42	12	60	0	.	227
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	77298849	77298849	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AP3B1	NM_003664	exon27	c.A3162G	p.S1054S	.	.	42	17	39	0	.	90
APCDD1	147495	bcgsc.ca	37	18	10487611	10487611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	APCDD1	NM_153000	exon5	c.T1121A	p.M374K	.	.	47	5	79	0	.	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	21252519	21252519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	APOB	NM_000384	exon12	c.A1609G	p.K537E	.	.	36	13	50	0	.	175
AR	367	broad.mit.edu	37	X	66765161	66765161	+	Missense_Mutation	SNP	A	A	T	rs200185441		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	AR	NM_000044	exon1	c.A173T	p.Q58L	.	.	164	7	181	1	.	661
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10401666	10401666	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ATP2B2	NM_001001331	exon13	c.A1801T	p.T601S	.	.	30	11	33	0	.	95
BTK	695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100608970	100608970	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	BTK	NM_000061	exon17	c.C1638G	p.V546V	.	.	57	16	58	0	.	1395
C18orf8	29919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21110006	21110006	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C18orf8	NM_013326	exon17	c.A1509G	p.E503E	.	.	90	35	112	1	.	91
C19orf57	79173	ucsc.edu	37	19	14001028	14001028	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C19orf57	NM_024323	exon6	c.A641T	p.E214V	.	.	40	4	49	0	.	93
C1orf65	164127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223568587	223568587	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1orf65	NM_152610	exon1	c.T1770C	p.P590P	.	.	222	53	195	1	.	91
C1QC	714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22970634	22970634	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C1QC	NM_001114101	exon2	c.G118A	p.G40S	.	.	99	37	115	0	.	90
C6orf222	389384	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	36298316	36298316	+	Missense_Mutation	SNP	G	G	A	rs74561471	byfrequency	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	C6orf222	NM_001010903	exon2	c.C152T	p.T51M	.	.	44	17	57	0	G|0.998;A|0.002	93
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44137245	44137245	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CAPN11	NM_007058	exon3	c.A316G	p.N106D	.	.	118	39	151	0	.	136
CASP10	843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202082364	202082364	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CASP10	NM_032977	exon10	c.G1469C	p.R490T	.	.	162	53	197	0	.	1086
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77808750	77808751	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CBX4	NM_003655	exon5	c.691_692insC	p.N231fs	.	.	123	14	120	0	.	228
CCDC171	203238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	15777776	15777776	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_173550	exon19	c.A2850G	p.V950V	.	.	62	29	72	0	.	.
CD80	941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119263583	119263583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CD80	NM_005191	exon3	c.T232A	p.S78T	.	.	93	34	132	0	.	92
CDC14C	168448	ucsc.edu;bcgsc.ca	37	7	48964300	48964300	+	RNA	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	.	.	.	24	8	50	0	.	.
CDC27	996	broad.mit.edu	37	17	45234625	45234625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CDC27	NM_001114091	exon6	c.G601A	p.V201I	.	.	93	6	77	1	.	291
CFB	629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31915210	31915210	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CFB	NM_001710	exon4	c.C570T	p.H190H	.	.	35	15	50	0	.	91
CHD5	26038	ucsc.edu	37	1	6185204	6185204	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CHD5	NM_015557	exon29	c.C4350T	p.H1450H	.	.	42	4	25	0	.	719
CHPF	79586	ucsc.edu	37	2	220405243	220405243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CHPF	NM_024536	exon4	c.T1190C	p.F397S	.	.	42	4	55	0	.	90
CHSY3	337876	bcgsc.ca	37	5	129240587	129240587	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CHSY3	NM_175856	exon1	c.C65A	p.A22D	.	.	3	2	14	0	.	25
CLEC16A	23274	ucsc.edu	37	16	11076750	11076750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CLEC16A	NM_015226	exon9	c.C973T	p.H325Y	.	.	38	4	55	0	.	92
CLHC1	130162	ucsc.edu	37	2	55433497	55433497	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_152385	exon9	c.C915A	p.I305I	.	.	31	4	21	0	.	.
CLIP2	7461	ucsc.edu	37	7	73753114	73753114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CLIP2	NM_032421	exon3	c.G458A	p.G153D	.	.	35	4	47	0	.	93
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17342344	17342344	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CNTLN	NM_017738	exon12	c.G1788T	p.K596N	.	.	140	45	193	0	.	91
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36564429	36564429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	COL8A2	NM_005202	exon2	c.G853A	p.A285T	.	.	57	17	62	0	.	90
CPXCR1	53336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	88008954	88008954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CPXCR1	NM_001184771	exon3	c.G539A	p.C180Y	.	.	142	54	183	0	.	133
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34258042	34258042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CSMD2	NM_052896	exon11	c.A1412G	p.Q471R	.	.	113	38	151	0	.	103
CWH43	80157	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	49005828	49005828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	CWH43	NM_025087	exon7	c.T879A	p.F293L	.	.	69	9	103	0	.	93
DDR1	780	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30861167	30861167	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DDR1	NM_001202523	exon10	c.C1368A	p.L456L	.	.	23	6	21	0	.	1403
DLC1	10395	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	12957573	12957573	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DLC1	NM_182643	exon9	c.C2273T	p.P758L	.	.	10	5	27	0	.	657
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57356458	57356458	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAH12	NM_178504	exon50	c.G7833A	p.T2611T	.	.	67	23	74	0	.	47
DNAJC5B	85479	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	66992665	66992665	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DNAJC5B	NM_033105	exon5	c.G387T	p.L129L	.	.	113	26	84	1	.	226
DOK4	55715	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57509446	57509446	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DOK4	NM_018110	exon4	c.C261G	p.D87E	.	.	18	5	19	0	.	227
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7576541	7576541	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DSP	NM_004415	exon19	c.A2645G	p.E882G	.	.	85	30	103	0	.	518
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	71	11	84	0	.	90
EBF1	1879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	158135124	158135124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EBF1	NM_024007	exon15	c.G1607A	p.S536N	.	.	25	12	72	0	.	92
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	2885054	2885054	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EMILIN2	NM_032048	exon3	c.A350G	p.D117G	.	.	59	22	76	0	.	93
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22915685	22915685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	EPHA8	NM_020526	exon5	c.C1301T	p.T434I	.	.	99	28	104	0	.	1380
ERI2	112479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	20802201	20802219	+	Frame_Shift_Del	DEL	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	GTCCCCTGAGGCCAGATCA	GTCCCCTGAGGCCAGATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ERI2	NM_080663	exon9	c.768_786del	p.256_262del	.	.	277	48	379	0	.	153
FAM151A	338094	ucsc.edu	37	1	55085551	55085551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FAM151A	NM_176782	exon2	c.C248T	p.T83I	.	.	39	4	55	0	.	90
FAM22G	441457	bcgsc.ca;mdanderson.org	37	9	99701238	99701238	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FAM22G	NM_001170741	exon7	c.C2033A	p.A678D	.	.	151	37	203	0	.	69
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	162431553	162431553	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FSTL5	NM_020116	exon11	c.G1336T	p.E446X	.	.	308	103	346	0	.	158
FZD10	11211	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130648395	130648395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	FZD10	NM_007197	exon1	c.G908A	p.G303E	.	.	18	6	26	0	.	658
GART	2618	ucsc.edu	37	21	34889741	34889741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GART	NM_001136005	exon15	c.T1877A	p.L626H	.	.	42	4	66	0	.	91
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120580319	120580320	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GCN1L1	NM_006836	exon44	c.5821_5822insT	p.K1941_R1942delinsX	.	.	90	36	87	0	.	94
GEMIN8	54960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	14027290	14027290	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GEMIN8	NM_001042480	exon5	c.473-2A>T	.	.	.	81	25	103	0	.	130
GLP1R	2740	ucsc.edu	37	6	39033996	39033996	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GLP1R	NM_002062	exon5	c.G426A	p.L142L	.	.	44	4	35	0	.	659
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	182353689	182353689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GLUL	NM_001033056	exon7	c.A973G	p.I325V	.	.	95	41	83	0	.	90
GRID1	2894	broad.mit.edu;mdanderson.org	37	10	87362151	87362151	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRID1	NM_017551	exon16	c.C2909A	p.S970X	.	.	83	17	147	1	.	142
GRIK3	2899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	37270816	37270816	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GRIK3	NM_000831	exon15	c.C2337A	p.I779I	.	.	34	5	59	0	.	158
GTF3C3	9330	broad.mit.edu	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	GTF3C3	NM_001206774	exon3	c.G309A	p.E103E	.	.	183	5	232	1	.	97
HIP1	3092	ucsc.edu	37	7	75221769	75221769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HIP1	NM_005338	exon3	c.T248C	p.L83P	.	.	45	4	34	0	.	1085
HIPK3	10114	bcgsc.ca	37	11	33374642	33374673	+	Frame_Shift_Del	DEL	AGCACTTTGGATCTGGGCATCAAGAGTGGAAT	AGCACTTTGGATCTGGGCATCAAGAGTGGAAT	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	AGCACTTTGGATCTGGGCATCAAGAGTGGAAT	AGCACTTTGGATCTGGGCATCAAGAGTGGAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HIPK3	NM_005734	exon17	c.3176_3207del	p.1059_1069del	.	.	62	0	74	0	.	336
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025434	71025434	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HKDC1	NM_025130	exon17	c.C2466T	p.C822C	.	.	80	38	87	0	.	95
HNRNPC	3183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21681136	21681136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HNRNPC	NM_031314	exon6	c.C545T	p.S182F	.	.	64	26	110	1	.	90
HOXA5	3202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27183054	27183054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HOXA5	NM_019102	exon1	c.G173A	p.R58H	.	.	33	7	38	1	.	514
HSP90AB1	3326	ucsc.edu	37	6	44219290	44219290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HSP90AB1	NM_007355	exon8	c.C1259T	p.A420V	.	.	32	5	31	0	.	658
HTR2C	3358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	114141284	114141284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	HTR2C	NM_000868	exon6	c.C683G	p.T228R	.	.	113	42	164	0	.	133
JARID2	3720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	15468865	15468865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JARID2	NM_004973	exon5	c.A586C	p.K196Q	.	.	82	29	102	0	.	228
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75227318	75227318	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	JPH1	NM_020647	exon2	c.G917C	p.G306A	.	.	176	34	133	0	.	91
KCNH6	81033	broad.mit.edu	37	17	61611297	61611297	+	Silent	SNP	G	G	A	rs200501259		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KCNH6	NM_030779	exon5	c.G726A	p.P242P	.	.	62	4	60	1	G|1.000;A|0.000	91
KCNJ14	3770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48965315	48965315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KCNJ14	NM_013348	exon2	c.G334A	p.G112S	.	.	43	26	22	0	.	91
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138655844	138655844	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KIAA1244	NM_020340	exon33	c.G5861C	p.G1954A	.	.	46	12	50	0	.	228
KIAA1751	85452	ucsc.edu	37	1	1916914	1916914	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KIAA1751	NM_001080484	exon6	c.C411A	p.R137R	.	.	34	4	50	0	.	69
KIF6	221458	ucsc.edu	37	6	39313566	39313566	+	Splice_Site	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	KIF6	NM_145027	exon22	c.2232-1G>A	.	.	.	40	4	59	0	.	713
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464367	39464367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_001146182	exon1	c.C1139G	p.P380R	.	.	115	24	119	0	.	.
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	30	10	18	2	.	.
LARP4B	23185	bcgsc.ca	37	10	859073	859073	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	LARP4B	NM_015155	exon18	c.2010delA	p.K670fs	.	.	36	4	71	0	.	92
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31669449	31669449	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	LIMK2	NM_005569	exon14	c.G1570C	p.D524H	.	.	54	14	62	0	.	548
LRRC1	55227	ucsc.edu	37	6	53762099	53762099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	LRRC1	NM_018214	exon7	c.C584T	p.A195V	.	.	44	4	40	0	.	91
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51639742	51639742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MAGED1	NM_001005333	exon5	c.G1159A	p.A387T	.	.	113	48	158	0	.	133
MANEAL	149175	broad.mit.edu	37	1	38265650	38265650	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MANEAL	NM_001113482	exon4	c.C1149G	p.Y383X	.	.	88	5	102	0	.	90
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168833394	168833394	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MECOM	NM_004991	exon8	c.C2266G	p.P756A	.	.	68	26	77	0	.	853
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41961695	41961695	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MGA	NM_001080541	exon2	c.G603A	p.L201L	.	.	90	23	92	0	.	522
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222802341	222802341	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MIA3	NM_198551	exon4	c.C1779G	p.D593E	.	.	131	23	98	0	.	98
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49933287	49933287	+	Silent	SNP	G	G	A	rs201143544		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MST1R	NM_002447	exon12	c.C2823T	p.I941I	.	.	44	12	39	0	G|0.999;A|0.001	1406
MYO15A	51168	ucsc.edu	37	17	18030155	18030155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MYO15A	NM_016239	exon6	c.A3917T	p.K1306I	.	.	35	4	51	0	.	97
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	52521421	52521421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	MYO5C	NM_018728	exon25	c.A3116G	p.E1039G	.	.	37	14	62	0	.	145
NEK8	284086	ucsc.edu	37	17	27064454	27064454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	NEK8	NM_178170	exon5	c.G749T	p.S250I	.	.	36	4	38	1	.	335
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	33684417	33684417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	NPAS3	NM_001164749	exon3	c.G170T	p.R57L	.	.	95	26	93	0	.	93
OR10G3	26533	broad.mit.edu	37	14	22038025	22038025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR10G3	NM_001005465	exon1	c.T851C	p.L284P	.	.	90	5	132	0	.	68
OR10X1	128367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158549068	158549068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR10X1	NM_001004477	exon1	c.A622G	p.S208G	.	.	273	57	161	0	.	69
OR2M7	391196	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248487416	248487416	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR2M7	NM_001004691	exon1	c.G455C	p.G152A	.	.	136	19	117	1	.	70
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587833	55587833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR5D18	NM_001001952	exon1	c.C728T	p.A243V	.	.	70	20	87	0	.	71
OR7G1	125962	broad.mit.edu;bcgsc.ca	37	19	9225688	9225688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OR7G1	NM_001005192	exon1	c.T752C	p.F251S	.	.	67	5	69	0	.	70
OTX2	5015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57268479	57268479	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	OTX2	NM_001270525	exon3	c.T868A	p.S290T	.	.	72	33	101	0	.	205
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140530762	140530762	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PCDHB6	NM_018939	exon1	c.G924A	p.E308E	.	.	46	7	91	0	.	91
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24513001	24513001	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PDK3	NM_001142386	exon2	c.248+1G>C	.	.	.	76	24	110	0	.	377
PHF2	5253	ucsc.edu	37	9	96416730	96416730	+	Silent	SNP	G	G	A	rs139132481	byfrequency	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PHF2	NM_005392	exon7	c.G825A	p.S275S	.	.	37	4	50	0	G|0.999;A|0.001	91
PHF6	84295	bcgsc.ca	37	X	133527969	133527969	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PHF6	NM_032335	exon5	c.A405T	p.A135A	.	.	316	131	371	4	.	131
PKHD1	5314	ucsc.edu	37	6	51776605	51776605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PKHD1	NM_170724	exon39	c.C6482A	p.A2161D	.	.	40	4	61	0	.	603
PLEKHA8P1	51054	broad.mit.edu	37	12	45567600	45567600	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PLEKHA8P1	.	.	.	.	.	.	130	6	162	0	.	226
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	208219318	208219318	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PLXNA2	NM_025179	exon18	c.3400delG	p.D1134fs	.	.	170	132	198	0	.	92
POTEH	23784	hgsc.bcm.edu;broad.mit.edu	37	22	16279260	16279260	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	POTEH	NM_001136213	exon4	c.963delA	p.K321fs	.	.	389	41	387	0	.	1
PPP6R2	9701	ucsc.edu	37	22	50869780	50869780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PPP6R2	NM_001242899	exon11	c.C1307A	p.A436D	.	.	43	4	36	0	.	92
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109241956	109241956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PRPF38B	NM_018061	exon6	c.C955G	p.R319G	.	.	238	49	159	0	.	90
PSD4	23550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113949983	113949983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	PSD4	NM_012455	exon6	c.C1655T	p.S552F	.	.	45	11	62	0	.	229
RNU6-71	100873774	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	56468670	56468670	+	RNA	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	.	.	.	59	16	80	0	.	.
RP9P	441212	ucsc.edu	37	7	32956881	32956881	+	RNA	SNP	A	A	G	rs2598302	bycluster;byfrequency;by2hit2allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	.	.	.	65	14	77	2	A|0.500;G|0.500	.
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	237875069	237875069	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	RYR2	NM_001035	exon71	c.T10255G	p.F3419V	.	.	208	18	185	0	.	158
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77057677	77057677	+	Splice_Site	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SCAPER	NM_020843	exon13	c.1613+1G>T	.	.	.	95	26	125	0	.	137
SEC14L5	9717	ucsc.edu	37	16	5058530	5058530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_014692	exon14	c.G1681A	p.G561S	.	.	32	4	55	0	.	.
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	2954826	2954826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SERPINB6	NM_001271823	exon4	c.G487A	p.G163S	.	.	43	12	45	0	.	226
SFT2D1	113402	broad.mit.edu	37	6	166743049	166743049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SFT2D1	NM_145169	exon3	c.G179A	p.G60D	.	.	312	8	343	2	.	514
SLC10A3	8273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	153715955	153715955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC10A3	NM_001142392	exon3	c.C1325A	p.A442D	.	.	124	37	130	0	.	132
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	19560719	19560719	+	Splice_Site	SNP	G	G	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC24A3	NM_020689	exon4	c.423+1G>C	.	.	.	105	58	101	0	.	91
SLC29A4	222962	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	5331370	5331370	+	Missense_Mutation	SNP	C	C	A	rs140428222	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC29A4	NM_153247	exon5	c.C462A	p.D154E	.	.	58	25	68	1	C|1.000;T|0.000	515
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32396397	32396397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SLC30A6	NM_001193513	exon2	c.T45A	p.F15L	.	.	89	33	100	0	.	90
SORBS3	10174	ucsc.edu	37	8	22418851	22418851	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SORBS3	NM_005775	exon6	c.T482C	p.L161S	.	.	31	4	60	0	.	90
SPRR3	6707	mdanderson.org	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SPRR3	NM_001097589	exon2	c.T243A	p.G81G	.	.	57	16	99	1	A|0.010;C|0.001;T|0.988	45
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	64	38	79	0	A|0.000;C|0.697;T|0.303	45
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42273946	42273946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SREBF2	NM_004599	exon9	c.G1580T	p.G527V	.	.	34	14	45	0	.	154
SUSD5	26032	bcgsc.ca	37	3	33195150	33195150	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SUSD5	NM_015551	exon5	c.G974C	p.S325T	.	.	88	5	149	0	.	24
SYNM	23336	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	99669633	99669633	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYNM	.	.	.	.	.	.	48	16	57	0	.	26
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	7273526	7273526	+	Silent	SNP	C	C	T	rs146068689	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	SYT9	NM_175733	exon1	c.C109T	p.L37L	.	.	57	23	52	0	C|1.000;G|0.000	155
TASP1	55617	broad.mit.edu	37	20	13561621	13561621	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TASP1	NM_017714	exon6	c.G411A	p.K137K	.	.	77	19	47	6	.	90
TDRD9	122402	ucsc.edu	37	14	104431860	104431860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TDRD9	NM_153046	exon4	c.C611T	p.A204V	.	.	40	4	58	0	.	70
TFE3	7030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48895554	48895554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TFE3	NM_006521	exon5	c.G866A	p.G289E	.	.	130	46	144	0	.	658
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	90035650	90035650	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TIGD2	NM_145715	exon1	c.C1525T	p.L509F	.	.	80	34	110	0	.	90
TLN1	7094	ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35703574	35703574	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLN1	NM_006289	exon48	c.A6457T	p.I2153L	.	.	35	5	67	0	.	609
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12937389	12937389	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TLR8	NM_138636	exon2	c.A230G	p.H77R	.	.	306	99	394	0	.	629
TMUB2	79089	broad.mit.edu	37	17	42266738	42266738	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TMUB2	NM_001076674	exon3	c.T384G	p.G128G	.	.	47	15	46	6	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	TP53,NS,carcinoma,+1	TP53	NM_000546	exon6	c.G644A	p.S215N	.	.	51	29	108	1	.	70225
TRIM37	4591	broad.mit.edu	37	17	57141746	57141746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TRIM37	NM_015294	exon10	c.A830T	p.D277V	.	.	580	22	438	8	.	660
TRPM7	54822	broad.mit.edu	37	15	50867247	50867247	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TRPM7	NM_017672	exon34	c.C4821T	p.L1607L	.	.	70	5	95	0	.	392
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3446875	3446875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TRPV3	NM_001258205	exon5	c.A359C	p.K120T	.	.	26	20	60	0	.	94
TSPEAR	54084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45941865	45941865	+	Missense_Mutation	SNP	G	G	C	rs201105425	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TSPEAR	NM_144991	exon9	c.C1467G	p.F489L	.	.	123	43	119	0	G|0.999;A|0.001	244
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179615005	179615005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	TTN	NM_133379	exon46	c.T12122A	p.V4041D	.	.	84	31	110	0	.	636
UBA6	55236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68543400	68543400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBA6	NM_018227	exon6	c.T394C	p.Y132H	.	.	55	6	82	0	.	90
UBAP2	55833	ucsc.edu	37	9	33933533	33933533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBAP2	NM_018449	exon18	c.A2063T	p.Q688L	.	.	45	4	46	0	.	94
UBC	7316	broad.mit.edu	37	12	125397099	125397099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBC	NM_021009	exon2	c.A1219G	p.K407E	.	.	243	7	334	0	.	46
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25616615	25616615	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UBE3A	NM_000462	exon7	c.A715G	p.I239V	.	.	69	29	59	0	.	660
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118971720	118971720	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	UPF3B	NM_080632	exon10	c.G1302C	p.K434N	.	.	55	19	56	0	.	133
USP54	159195	broad.mit.edu	37	10	75276606	75276606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	USP54	NM_152586	exon18	c.G3578A	p.G1193E	.	.	47	5	48	0	.	721
VASN	114990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	4431099	4431099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VASN	NM_138440	exon2	c.G221T	p.G74V	.	.	49	12	73	1	.	68
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6125791	6125791	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	VWF	NM_000552	exon30	c.G5202A	p.Q1734Q	.	.	111	28	102	0	.	163
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	31030549	31030549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	WRN	NM_000553	exon35	c.G4230A	p.W1410X	.	.	35	16	80	0	.	1036
XCL2	6846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	168510343	168510343	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	XCL2	NM_003175	exon3	c.T192C	p.R64R	.	.	169	22	107	0	.	91
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	64167242	64167242	+	Missense_Mutation	SNP	C	C	A	rs199803183	alternate_allele	TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF107	NM_016220	exon7	c.C560A	p.P187H	.	.	73	27	63	0	C|0.999;T|0.001	69
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22000753	22000753	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF43	NM_001256653	exon3	c.C193T	p.L65L	.	.	52	34	61	0	.	154
ZNF615	284370	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52506956	52506956	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF615	NM_001199324	exon3	c.G9C	p.Q3H	.	.	66	10	62	0	.	95
ZNF678	339500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227843314	227843314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZNF678	NM_178549	exon4	c.C1528A	p.H510N	.	.	79	16	66	0	.	91
ZNF736	728927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63796756	63796756	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	NM_001170905	exon3	c.C123G	p.V41V	.	.	25	6	27	0	.	.
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44512235	44512235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	ZSWIM1	NM_080603	exon2	c.C1004T	p.T335I	.	.	96	51	77	0	.	91
OR5B12	390191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58207024	58207025	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-G3-A7M6-01A-11D-A33Q-10	TCGA-G3-A7M6-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b169ab6b-42d8-4868-bfc2-8f08e8d8a0f6	23b38a16-e459-4735-8033-cc843860bb38	.	.	.	.	.	p.V201L	.	.	.	.	.	.	.	
