Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA12	26154	broad.mit.edu	37	2	215835096	215835096	+	Missense_Mutation	SNP	G	G	A	rs191670598		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ABCA12	NM_173076	exon37	c.C5591T	p.P1864L	.	.	183	9	256	2	A|0.000;G|0.999;T|0.000	99
ABCB5	340273	ucsc.edu	37	7	20744379	20744379	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ABCB5	NM_001163941	exon20	c.C2370A	p.S790R	.	.	41	4	47	0	.	158
ABCC3	8714	ucsc.edu	37	17	48755226	48755226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ABCC3	NM_003786	exon24	c.G3500T	p.S1167I	.	.	34	4	36	0	.	93
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	116417809	116417809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ABLIM1	NM_002313	exon1	c.G151T	p.A51S	.	.	55	17	64	0	.	153
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89385015	89385015	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ACAN	NM_001135	exon5	c.A674G	p.D225G	.	.	34	17	44	0	.	25
ACVR2B	93	ucsc.edu	37	3	38519987	38519987	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ACVR2B	NM_001106	exon5	c.C644A	p.A215D	.	.	38	4	46	0	.	942
ADAMTS10	81794	mdanderson.org	37	19	8654820	8654820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ADAMTS10	NM_030957	exon16	c.G1853A	p.S618N	.	.	10	3	15	0	.	229
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18639393	18639393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ADAMTSL1	NM_052866	exon7	c.C818T	p.A273V	.	.	44	16	56	0	.	230
ANKLE2	23141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133324833	133324833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ANKLE2	NM_015114	exon4	c.C932A	p.A311D	.	.	48	7	105	0	.	68
ARHGAP12	94134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	32150410	32150410	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ARHGAP12	NM_001270698	exon4	c.G861C	p.G287G	.	.	121	29	122	0	.	227
ARHGAP40	343578	bcgsc.ca	37	20	37267470	37267470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ARHGAP40	NM_001164431	exon8	c.G1105A	p.A369T	.	.	78	6	85	0	.	68
ARHGEF26	26084	ucsc.edu	37	3	153840804	153840804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ARHGEF26	NM_001251962	exon2	c.G1023T	p.Q341H	.	.	37	4	42	0	.	47
ARHGEF6	9459	broad.mit.edu	37	X	135862939	135862939	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ARHGEF6	NM_004840	exon1	c.C103A	p.L35M	.	.	34	5	41	1	.	227
ASB4	51666	ucsc.edu;bcgsc.ca	37	7	95157219	95157219	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASB4	NM_016116	exon3	c.C582T	p.Y194Y	.	.	20	4	25	0	.	226
ASL	435	ucsc.edu	37	7	65551762	65551762	+	Missense_Mutation	SNP	C	C	T	rs111407265	byfrequency;alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASL	NM_000048	exon8	c.C556T	p.R186W	.	.	21	4	20	0	C|0.995;A|0.005	153
ASNA1	439	broad.mit.edu;mdanderson.org	37	19	12856230	12856230	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASNA1	NM_004317	exon3	c.G349T	p.E117X	.	.	12	3	14	0	.	92
ASPH	444	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	62475310	62475310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ASPH	NM_004318	exon18	c.A1430T	p.Y477F	.	.	100	13	63	1	.	93
ATP6	0	broad.mit.edu;bcgsc.ca	37	MT	9187	9187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	ENST00000361899	exon1	c.T661C	p.Y221H	.	.	457	21	233	2	.	.
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142275251	142275251	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ATR	NM_001184	exon9	c.T2052G	p.S684S	.	.	77	18	87	0	.	1139
BFSP1	631	broad.mit.edu	37	20	17505501	17505501	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	BFSP1	NM_001195	exon2	c.C430A	p.L144I	.	.	60	5	88	0	.	90
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113005642	113005642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	BOC	NM_033254	exon20	c.C3278A	p.P1093H	.	.	33	12	60	0	.	157
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	41245778	41245778	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	BRCA1	NM_007300	exon10	c.T1770C	p.S590S	.	.	136	13	173	0	.	3415
C14orf180	400258	ucsc.edu	37	14	105054628	105054628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	C14orf180	NM_001008404	exon4	c.G259T	p.A87S	.	.	42	4	54	0	.	492
C16orf88	400506	ucsc.edu	37	16	19718344	19718344	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	C16orf88	NM_001012991	exon5	c.G1265C	p.R422P	.	.	26	3	34	0	.	68
C17orf80	55028	ucsc.edu	37	17	71232969	71232969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	C17orf80	NM_001100621	exon3	c.G1348T	p.A450S	.	.	34	4	41	0	.	91
C6orf15	29113	broad.mit.edu	37	6	31079732	31079732	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	C6orf15	NM_014070	exon2	c.T404A	p.L135H	.	.	27	4	48	2	.	90
CACNA1E	777	ucsc.edu	37	1	181721369	181721369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CACNA1E	NM_001205293	exon27	c.G3822T	p.K1274N	.	.	40	4	47	0	.	95
CCDC150	284992	ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197595663	197595663	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001080539	exon26	c.A3063C	p.S1021S	.	.	46	10	81	1	.	.
CCDC169-SOHLH2	100526761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36747869	36747869	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001198910	exon14	c.C1191T	p.S397S	.	.	38	9	50	0	.	.
CCDC178	374864	ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30926284	30926284	+	Silent	SNP	G	G	A	rs35283321	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001105528	exon8	c.C549T	p.D183D	.	.	131	37	149	1	G|0.991;A|0.009	.
CCR6	1235	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	167550438	167550438	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CCR6	NM_004367	exon3	c.C720T	p.T240T	.	.	52	9	58	1	.	227
CEP170P1	645455	broad.mit.edu	37	4	119444561	119444561	+	RNA	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	23	4	36	0	.	.
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93510735	93510735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CHD2	NM_001271	exon17	c.G2181C	p.Q727H	.	.	59	13	63	0	.	229
CLASP2	23122	ucsc.edu	37	3	33623319	33623319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CLASP2	NM_015097	exon23	c.C2344T	p.P782S	.	.	41	4	35	2	.	93
COL1A1	1277	ucsc.edu	37	17	48266853	48266853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	COL1A1	NM_000088	exon39	c.G2714T	p.G905V	.	.	30	4	44	0	.	986
COL24A1	255631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86554879	86554879	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	COL24A1	NM_152890	exon7	c.C1685T	p.P562L	.	.	160	40	188	0	.	94
COMMD5	28991	ucsc.edu	37	8	146076517	146076517	+	Silent	SNP	C	C	T	rs421427	alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	COMMD5	NM_001081004	exon2	c.G207A	p.Q69Q	.	.	29	4	12	0	C|1.000;|0.000	91
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3830772	3830772	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CREBBP	NM_004380	exon8	c.A1784G	p.H595R	.	.	43	10	73	0	.	1807
CROCCP3	114819	broad.mit.edu	37	1	16812113	16812113	+	RNA	SNP	G	G	A	rs200988154	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	22	5	26	0	G|0.979;A|0.021	.
CST5	1473	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	23856835	23856835	+	Missense_Mutation	SNP	C	C	A	rs146272783	byfrequency;alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CST5	NM_001900	exon3	c.G419T	p.R140L	.	.	22	4	23	0	C|0.998;T|0.002	90
CWF19L1	55280	bcgsc.ca	37	10	101996696	101996696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CWF19L1	NM_018294	exon12	c.A1285G	p.T429A	.	.	30	4	50	0	.	90
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	96796969	96796969	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	CYP2C8	NM_000770	exon9	c.T1389C	p.D463D	.	.	64	16	92	0	.	90
DBX2	440097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45429822	45429822	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DBX2	NM_001004329	exon2	c.C479G	p.A160G	.	.	33	5	50	0	.	90
DCAF7	10238	ucsc.edu	37	17	61660956	61660956	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DCAF7	NM_005828	exon6	c.C621A	p.R207R	.	.	35	4	34	0	.	91
DGCR6L	85359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20307214	20307214	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DGCR6L	NM_033257	exon2	c.C219T	p.L73L	.	.	54	9	73	0	.	90
DLST	1743	bcgsc.ca;mdanderson.org	37	14	75360077	75360077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DLST	NM_001933	exon9	c.C622A	p.P208T	.	.	72	20	95	2	.	227
DSG4	147409	ucsc.edu	37	18	28991218	28991218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	DSG4	NM_001134453	exon14	c.C2219T	p.A740V	.	.	30	4	50	0	.	177
EIF4G1	1981	ucsc.edu	37	3	184049055	184049055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	EIF4G1	NM_001194946	exon30	c.G4184A	p.G1395D	.	.	40	4	49	0	.	344
EPHB6	2051	ucsc.edu	37	7	142566407	142566407	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	EPHB6	NM_004445	exon15	c.G2196T	p.L732L	.	.	36	4	51	0	.	1489
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152415519	152415519	+	Splice_Site	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ESR1	NM_001122742	exon9	c.1370-1G>A	.	.	.	38	10	49	0	.	1042
FAM184A	79632	ucsc.edu	37	6	119399344	119399344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FAM184A	NM_024581	exon1	c.C121T	p.H41Y	.	.	20	4	31	0	.	519
FAM221B	392307	mdanderson.org	37	9	35825581	35825581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001012446	exon2	c.C578T	p.A193V	.	.	56	12	94	3	.	.
FAM22D	728130	broad.mit.edu	37	10	89117886	89117886	+	RNA	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FAM22D	.	.	.	.	.	.	149	29	182	1	.	22
FARSB	10056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223494886	223494886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FARSB	NM_005687	exon9	c.T794C	p.I265T	.	.	111	36	143	0	.	91
FBXO18	84893	ucsc.edu	37	10	5948208	5948208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FBXO18	NM_032807	exon4	c.G519T	p.K173N	.	.	34	4	30	0	.	228
FGD3	89846	mdanderson.org	37	9	95738622	95738622	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FGD3	NM_001083536	exon3	c.C84A	p.S28S	.	.	33	7	43	1	.	228
FLG	2312	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286392	152286392	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FLG	NM_002016	exon3	c.T970C	p.S324P	.	.	90	27	128	1	.	106
FLT3LG	2323	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49979435	49979435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FLT3LG	NM_001204503	exon3	c.G178A	p.V60M	.	.	29	6	52	0	.	115
FOXN4	121643	ucsc.edu	37	12	109728029	109728029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FOXN4	NM_213596	exon3	c.C149T	p.T50M	.	.	35	4	51	0	.	227
FOXRED1	55572	ucsc.edu	37	11	126139128	126139128	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	FOXRED1	NM_017547	exon1	c.C27T	p.G9G	.	.	33	4	61	0	.	90
GDPGP1	390637	mdanderson.org	37	15	90784559	90784559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001013657	exon4	c.G419A	p.R140Q	.	.	24	6	25	0	.	.
GGA3	23163	ucsc.edu;mdanderson.org	37	17	73236489	73236489	+	Silent	SNP	G	G	C	rs149621783	byfrequency;alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GGA3	NM_138619	exon12	c.C1197G	p.L399L	.	.	17	4	15	0	G|1.000;A|0.000	154
GLE1	2733	broad.mit.edu;mdanderson.org	37	9	131295815	131295815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GLE1	NM_001499	exon10	c.G1336A	p.D446N	.	.	53	11	53	2	.	22
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57484420	57484420	+	Missense_Mutation	SNP	C	C	T	rs11554273	bycluster	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	GNAS,colon,carcinoma,0	GNAS	NM_080425	exon8	c.C2530T	p.R844C	.	.	46	18	74	0	C|1.000	4767
GPC1	2817	ucsc.edu;bcgsc.ca	37	2	241401973	241401973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	GPC1	NM_002081	exon3	c.A691T	p.S231C	.	.	17	4	19	0	.	153
HDLBP	3069	ucsc.edu	37	2	242192889	242192889	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HDLBP	NM_005336	exon10	c.C1212A	p.G404G	.	.	41	4	52	0	.	290
HECW2	57520	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	197183957	197183957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HECW2	NM_020760	exon9	c.G1657A	p.G553S	.	.	34	7	46	0	.	668
HELZ2	85441	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62196722	62196722	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001037335	exon9	c.C3453A	p.S1151S	.	.	14	5	19	0	.	.
HIPK2	28996	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139258131	139258131	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HIPK2	NM_022740	exon15	c.A3139G	p.I1047V	.	.	14	5	27	0	.	785
HIST1H3G	8355	ucsc.edu	37	6	26271274	26271274	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HIST1H3G	NM_003534	exon1	c.C339A	p.I113I	.	.	41	4	58	0	.	90
HIST2H2BA	337875	broad.mit.edu;bcgsc.ca	37	1	120906208	120906208	+	RNA	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	56	17	65	0	.	.
HNRNPUL2	221092	bcgsc.ca	37	11	62491849	62491849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	HNRNPUL2	NM_001079559	exon2	c.G588T	p.E196D	.	.	79	6	93	0	.	22
ICK	22858	bcgsc.ca	37	6	52902748	52902748	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ICK	NM_016513	exon4	c.C145A	p.R49R	.	.	131	37	199	4	.	421
IFNA14	3448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21239523	21239523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	IFNA14	NM_002172	exon1	c.G412T	p.D138Y	.	.	47	18	103	0	.	68
JAKMIP1	152789	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6087184	6087184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	JAKMIP1	NM_001099433	exon4	c.C797G	p.P266R	.	.	16	5	32	0	.	292
KIF24	347240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34310818	34310818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	KIF24	NM_194313	exon2	c.A527G	p.Y176C	.	.	133	34	174	0	.	22
KL	9365	broad.mit.edu	37	13	33628246	33628246	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	KL	NM_004795	exon2	c.C1162T	p.Q388X	.	.	58	4	79	0	.	155
KRT14	3861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39740122	39740122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	KRT14	NM_000526	exon4	c.G817A	p.D273N	.	.	43	11	53	1	.	91
LAMC1	3915	ucsc.edu	37	1	183095376	183095376	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LAMC1	NM_002293	exon16	c.T2923C	p.F975L	.	.	40	4	84	0	.	252
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48950602	48950602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LHCGR	NM_000233	exon6	c.G529T	p.V177L	.	.	55	11	82	0	.	589
LMOD2	442721	broad.mit.edu;bcgsc.ca	37	7	123303229	123303229	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LMOD2	NM_207163	exon2	c.G1589A	p.R530Q	.	.	84	7	100	0	.	68
LRRC37A4P	55073	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	136	5	150	1	G|1.000;|0.000	.
LRRC6	23639	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133584681	133584681	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	LRRC6	NM_012472	exon12	c.T1274C	p.F425S	.	.	357	49	254	2	.	92
MAATS1	89876	ucsc.edu	37	3	119422051	119422051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_033364	exon1	c.G106A	p.A36T	.	.	38	4	46	0	.	.
MAD2L2	10459	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11736162	11736162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MAD2L2	NM_006341	exon6	c.T368A	p.L123H	.	.	15	5	21	0	.	659
MFAP3	4238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	153429404	153429404	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MFAP3	NM_005927	exon2	c.A122G	p.N41S	.	.	84	21	120	0	.	90
MICU1	10367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	74326487	74326487	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001195518	exon2	c.G65T	p.G22V	.	.	45	17	77	0	.	.
MIRLET7BHG	400931	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46501301	46501301	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	56	9	131	1	.	.
MLL2	8085	ucsc.edu	37	12	49426016	49426016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MLL2	NM_003482	exon39	c.C12472A	p.P4158T	.	.	23	4	32	0	.	612
MUC2	4583	mdanderson.org	37	11	1092910	1092910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MUC2	NM_002457	exon30	c.G4729A	p.G1577S	.	.	12	4	13	0	.	90
MUC4	4585	broad.mit.edu	37	3	195506914	195506914	+	Missense_Mutation	SNP	G	G	A	rs186560307	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MUC4	NM_018406	exon2	c.C11537T	p.P3846L	.	.	4	2	8	0	A|0.146;C|0.034;G|0.820	90
MYO1C	4641	ucsc.edu	37	17	1380804	1380804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MYO1C	NM_001080779	exon14	c.C1569A	p.F523L	.	.	44	4	46	0	.	90
MYO7B	4648	ucsc.edu	37	2	128389955	128389955	+	Missense_Mutation	SNP	G	G	A	rs201947315		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	MYO7B	NM_001080527	exon38	c.G5306A	p.R1769H	.	.	37	4	51	0	G|0.999;A|0.000	47
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	48595832	48595832	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	N4BP1	NM_153029	exon2	c.G722T	p.G241V	.	.	81	24	129	0	.	22
NCOA1	8648	broad.mit.edu;mdanderson.org	37	2	24962370	24962370	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NCOA1	NM_147223	exon16	c.A3271C	p.R1091R	.	.	52	8	43	2	.	228
ND4	0	broad.mit.edu	37	MT	11888	11888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	ENST00000361381	exon1	c.G1129A	p.G377R	.	.	412	10	226	2	.	.
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	21486186	21486186	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NDRG2	NM_201537	exon15	c.G909A	p.L303L	.	.	27	15	29	0	.	154
NLK	51701	broad.mit.edu	37	17	26370286	26370286	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NLK	NM_016231	exon1	c.G387A	p.S129S	.	.	218	5	294	1	.	1403
NLRP2	55655	bcgsc.ca	37	19	55501932	55501932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NLRP2	NM_017852	exon10	c.G2600T	p.S867I	.	.	81	6	93	0	.	120
NMD3	51068	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	160960387	160960387	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NMD3	NM_015938	exon11	c.C963T	p.C321C	.	.	52	9	76	1	.	91
NOP14-AS1	317648	ucsc.edu	37	4	2940462	2940462	+	RNA	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	.	.	.	46	1	59	0	.	.
NR1D1	9572	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38252734	38252734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	NR1D1	NM_021724	exon4	c.G566A	p.R189H	.	.	45	12	61	1	.	226
OR2F1	26211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143657370	143657370	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	OR2F1	NM_012369	exon1	c.T307C	p.F103L	.	.	62	17	95	0	.	71
OSCAR	126014	ucsc.edu	37	19	54600300	54600300	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	OSCAR	NM_130771	exon4	c.C234A	p.L78L	.	.	29	4	39	0	.	68
PARP4	143	ucsc.edu	37	13	25052393	25052393	+	Missense_Mutation	SNP	G	G	T	rs79107024	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PARP4	NM_006437	exon13	c.C1470A	p.H490Q	.	.	44	6	63	4	G|0.875;T|0.125	94
PARP4	143	ucsc.edu;bcgsc.ca	37	13	25021323	25021323	+	Missense_Mutation	SNP	A	A	G	rs73172125		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PARP4	NM_006437	exon26	c.T3116C	p.I1039T	.	.	55	10	80	2	A|0.500;G|0.500	94
PASK	23178	ucsc.edu	37	2	242046889	242046889	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PASK	NM_001252119	exon17	c.G3714T	p.L1238L	.	.	41	4	57	1	.	536
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140516880	140516880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PCDHB5	NM_015669	exon1	c.G1864C	p.E622Q	.	.	11	4	9	0	.	95
PCF11	51585	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82879585	82879585	+	Silent	SNP	G	G	A	rs149809762		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PCF11	NM_015885	exon8	c.G2208A	p.L736L	.	.	59	13	91	1	G|0.998;A|0.002	23
PDE4DIP	9659	broad.mit.edu	37	1	144882490	144882490	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PDE4DIP	NM_014644	exon24	c.C3529T	p.Q1177X	.	.	63	6	81	0	.	663
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	249211312	249211312	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PGBD2	NM_170725	exon3	c.C529T	p.Q177X	.	.	46	12	47	0	.	91
PHF2	5253	ucsc.edu	37	9	96429382	96429382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PHF2	NM_005392	exon17	c.G2208T	p.E736D	.	.	35	4	31	0	.	91
PIGZ	80235	bcgsc.ca;mdanderson.org	37	3	196674072	196674072	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PIGZ	NM_025163	exon3	c.G1696T	p.D566Y	.	.	13	7	28	1	.	93
PKD1L1	168507	ucsc.edu	37	7	47913570	47913570	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PKD1L1	NM_138295	exon24	c.A3823G	p.K1275E	.	.	31	4	54	0	.	145
PML	5371	ucsc.edu	37	15	74326859	74326859	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PML	NM_002675	exon7	c.T1698A	p.D566E	.	.	35	4	42	0	.	1083
PPIL2	23759	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	22049306	22049306	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PPIL2	NM_014337	exon19	c.G1413A	p.Q471Q	.	.	10	6	16	0	.	92
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	14105806	14105806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PRDM2	NM_015866	exon8	c.C1516T	p.H506Y	.	.	39	13	82	0	.	116
PSD4	23550	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	113955466	113955466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PSD4	NM_012455	exon14	c.G2600T	p.W867L	.	.	26	7	35	0	.	229
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114348335	114348335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PTGR1	NM_001146108	exon5	c.C320T	p.T107I	.	.	70	18	110	0	.	90
PXDN	7837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1638057	1638057	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	PXDN	NM_012293	exon23	c.T4359C	p.P1453P	.	.	27	7	40	0	.	166
RAB3GAP2	25782	ucsc.edu	37	1	220325062	220325062	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RAB3GAP2	NM_012414	exon34	c.G3912A	p.L1304L	.	.	36	4	34	0	.	90
RALGAPA2	57186	ucsc.edu	37	20	20392779	20392779	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RALGAPA2	NM_020343	exon38	c.G5509T	p.A1837S	.	.	42	4	64	0	.	24
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53609161	53609161	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RARG	NM_000966	exon5	c.A391G	p.N131D	.	.	25	6	39	0	.	722
RNF43	54894	ucsc.edu;mdanderson.org	37	17	56437569	56437569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RNF43	NM_017763	exon8	c.G893A	p.C298Y	.	.	21	4	28	0	.	92
ROCK1	6093	bcgsc.ca	37	18	18533546	18533546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ROCK1	NM_005406	exon32	c.A4054G	p.K1352E	.	.	242	42	357	3	.	1026
RP1L1	94137	bcgsc.ca	37	8	10465962	10465962	+	Missense_Mutation	SNP	C	C	A	rs111646478		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RP1L1	NM_178857	exon4	c.G5646T	p.E1882D	.	.	28	9	51	0	C|0.500;A|0.500	139
RP1L1	94137	bcgsc.ca	37	8	10465965	10465965	+	Silent	SNP	T	T	C	rs112534810	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RP1L1	NM_178857	exon4	c.A5643G	p.G1881G	.	.	28	9	49	2	T|0.997;C|0.003	139
RP1L1	94137	bcgsc.ca	37	8	10465990	10465990	+	Missense_Mutation	SNP	T	T	C	rs200622636	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	RP1L1	NM_178857	exon4	c.A5618G	p.D1873G	.	.	22	8	47	0	T|0.993;C|0.007	139
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92733863	92733863	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SAMD9	NM_001193307	exon2	c.A1548T	p.E516D	.	.	51	18	71	0	.	140
SEMA6A	57556	bcgsc.ca	37	5	115822643	115822643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SEMA6A	NM_020796	exon10	c.C764A	p.A255D	.	.	70	6	85	0	.	92
SESN3	143686	ucsc.edu	37	11	94926641	94926641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SESN3	NM_144665	exon2	c.G124T	p.A42S	.	.	45	4	44	0	.	90
SEZ6L	23544	ucsc.edu	37	22	26747127	26747127	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SEZ6L	NM_021115	exon12	c.G2517T	p.V839V	.	.	28	4	53	0	.	95
SGK196	0	bcgsc.ca;mdanderson.org	37	8	42977499	42977499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_032237	exon5	c.A532G	p.R178G	.	.	22	11	55	2	.	.
SIGLEC1	6614	ucsc.edu	37	20	3687736	3687736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SIGLEC1	NM_023068	exon1	c.T40C	p.F14L	.	.	21	4	30	0	.	167
SKIV2L	6499	ucsc.edu	37	6	31935834	31935834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SKIV2L	NM_006929	exon23	c.A2833G	p.S945G	.	.	28	4	48	0	.	290
SLC18A1	6570	bcgsc.ca	37	8	20036885	20036885	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SLC18A1	NM_001142324	exon4	c.235delT	p.S79fs	.	.	49	6	93	0	.	92
SLC30A4	7782	ucsc.edu	37	15	45778904	45778904	+	Missense_Mutation	SNP	G	G	T	rs139044393	alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SLC30A4	NM_013309	exon7	c.C1040A	p.A347D	.	.	49	5	52	0	G|1.000;C|0.000	90
SLC35G5	83650	ucsc.edu	37	8	11188922	11188922	+	Missense_Mutation	SNP	T	T	C	rs76944947	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_054028	exon1	c.T307C	p.W103R	.	.	34	6	56	2	T|0.975;C|0.025	.
SLC39A8	64116	ucsc.edu	37	4	103189148	103189148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SLC39A8	NM_022154	exon6	c.G929T	p.C310F	.	.	43	4	55	0	.	90
SPHK1	8877	ucsc.edu	37	17	74381218	74381218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SPHK1	NM_182965	exon1	c.G32T	p.S11I	.	.	37	4	40	0	.	1107
SSPO	23145	mdanderson.org	37	7	149474899	149474899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_198455	exon5	c.T698C	p.L233P	.	.	13	3	18	0	.	.
SVIL	6840	ucsc.edu	37	10	29779847	29779847	+	Missense_Mutation	SNP	A	A	C	rs61737900	byfrequency	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SVIL	NM_021738	exon22	c.T4121G	p.L1374R	.	.	55	11	70	5	A|0.783;C|0.217	96
SYNPO2	171024	ucsc.edu	37	4	119952761	119952761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	SYNPO2	NM_001128934	exon4	c.C2831A	p.A944D	.	.	31	4	37	0	.	92
TLN1	7094	ucsc.edu	37	9	35711032	35711032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TLN1	NM_006289	exon31	c.A4067G	p.Q1356R	.	.	40	4	58	0	.	609
TMEM187	8269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153247691	153247691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TMEM187	NM_003492	exon2	c.G178A	p.V60M	.	.	36	23	38	0	.	130
TMEM233	387890	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120031811	120031811	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001136534	exon1	c.A158G	p.N53S	.	.	51	12	85	1	.	.
TPO	7173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	1481014	1481014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TPO	NM_175719	exon8	c.G976T	p.A326S	.	.	38	10	62	0	.	332
TRABD2A	129293	bcgsc.ca;mdanderson.org	37	2	85097547	85097547	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	NM_001080824	exon2	c.T471T	p.A157A	.	.	30	12	31	1	.	.
TRERF1	55809	ucsc.edu	37	6	42231148	42231148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TRERF1	NM_033502	exon8	c.C1794A	p.S598R	.	.	53	5	68	0	.	230
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234839334	234839334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	TRPM8,upper_arm,malignant_melanoma,-1	TRPM8	NM_024080	exon3	c.G139A	p.A47T	.	.	57	13	92	0	.	94
TXNRD1	7296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	104645406	104645406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	TXNRD1	.	.	.	.	.	.	26	6	45	0	.	90
UMODL1	89766	ucsc.edu	37	21	43547837	43547837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	UMODL1	NM_173568	exon19	c.G3970T	p.A1324S	.	.	40	4	61	0	.	93
UTP20	27340	ucsc.edu	37	12	101767462	101767462	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	UTP20	NM_014503	exon54	c.A7048G	p.I2350V	.	.	41	4	87	0	.	155
WDFY3	23001	ucsc.edu	37	4	85781715	85781715	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	WDFY3	NM_014991	exon4	c.G30T	p.R10R	.	.	25	4	40	0	.	93
WDR17	116966	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177071281	177071281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	WDR17	NM_170710	exon16	c.A2207T	p.N736I	.	.	73	20	82	1	.	95
YIPF5	81555	ucsc.edu	37	5	143549469	143549469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	YIPF5	NM_001024947	exon2	c.C51A	p.S17R	.	.	32	4	64	1	.	92
ZFP37	7539	bcgsc.ca	37	9	115806220	115806220	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZFP37	NM_003408	exon4	c.T678C	p.T226T	.	.	255	75	308	6	.	92
ZG16B	124220	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	2880751	2880751	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZG16B	NM_145252	exon3	c.G217T	p.E73X	.	.	35	10	56	0	.	91
ZNF142	7701	ucsc.edu	37	2	219507362	219507362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF142	NM_001105537	exon8	c.G3877T	p.A1293S	.	.	35	4	46	0	.	137
ZNF239	8187	broad.mit.edu	37	10	44053311	44053311	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF239	NM_001099284	exon3	c.G217C	p.D73H	.	.	93	5	136	0	.	90
ZNF616	90317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52618825	52618825	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF616	NM_178523	exon4	c.G1592T	p.S531I	.	.	58	10	61	0	.	90
ZNF618	114991	ucsc.edu	37	9	116770655	116770655	+	Silent	SNP	G	G	T	rs3748184	alternate_allele	TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF618	NM_133374	exon7	c.G576T	p.R192R	.	.	38	4	44	0	G|1.000;|0.000	22
ZNF665	79788	broad.mit.edu	37	19	53686143	53686143	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF665	NM_024733	exon2	c.T9C	p.L3L	.	.	7	3	13	0	.	70
ZNF675	171392	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	23844915	23844915	+	Splice_Site	SNP	C	C	G	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZNF675	NM_138330	exon4	c.226+1G>C	.	.	.	57	15	51	1	.	228
ZSWIM2	151112	broad.mit.edu;bcgsc.ca	37	2	187713759	187713759	+	Silent	SNP	G	G	C	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	ZSWIM2	NM_182521	exon1	c.C99G	p.L33L	.	.	57	15	104	2	.	93
CNTNAP3B	728577	broad.mit.edu	37	9	43915846	43915847	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-G3-A7M7-01A-12D-A34Z-10	TCGA-G3-A7M7-10A-01D-A34Z-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2e2d5d14-93c7-44fb-bee9-d6bf7c286368	3a264183-655d-4ab5-ade1-24ffbfd0cdb0	.	.	.	.	.	p.E1232L	.	.	.	.	.	.	.	
