Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;mdanderson.org	37	7	48273680	48273680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ABCA13	NM_152701	exon8	c.A829T	p.K277X	.	.	77	8	116	0	.	521
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62286773	62286773	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	AHNAK	NM_001620	exon5	c.A15116T	p.K5039I	.	.	126	28	138	0	.	109
AP1AR	55435	ucsc.edu	37	4	113189515	113189515	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	AP1AR	NM_018569	exon10	c.C859G	p.L287V	.	.	86	3	97	0	.	90
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	21230621	21230625	+	Frame_Shift_Del	DEL	GAAAA	GAAAA	-	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	GAAAA	GAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOB	NM_000384	exon26	c.9115_9119del	p.3039_3040del	.	.	123	38	164	0	.	175
APOH	350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	64210603	64210603	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	APOH	NM_000042	exon7	c.A950C	p.D317A	.	.	130	9	197	0	.	90
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071915	197071915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ASPM	NM_018136	exon18	c.G6466C	p.G2156R	.	.	51	18	57	0	.	615
BAGE3	85318	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	NM_182481	exon3	c.G118A	p.D40N	.	.	183	10	203	4	C|0.750;T|0.250	.
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	60687855	60687855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	BCL11A	NM_018014	exon4	c.G2192A	p.G731D	.	.	47	12	54	0	.	1149
C16orf59	80178	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	2514087	2514087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	C16orf59	NM_025108	exon9	c.G1012A	p.G338R	.	.	92	9	97	0	.	90
CCT6P1	643253	broad.mit.edu;ucsc.edu	37	7	65222986	65222986	+	RNA	SNP	G	G	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	.	.	.	.	.	.	34	5	29	0	.	.
CLVS2	134829	broad.mit.edu;bcgsc.ca	37	6	123319206	123319206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CLVS2	NM_001010852	exon2	c.G284A	p.G95D	.	.	127	9	137	0	.	27
COX2	5743	broad.mit.edu	37	MT	7928	7928	+	Missense_Mutation	SNP	G	G	A	rs78857533	alternate_allele	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361739	exon1	c.G343A	p.G115R	.	.	618	27	27	0	T|1.000;|0.000	.
COX2	5743	broad.mit.edu;bcgsc.ca	37	MT	7706	7706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361739	exon1	c.G121A	p.A41T	.	.	720	690	25	0	.	.
CTC1	80169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8139600	8139600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	CTC1	NM_025099	exon6	c.G853A	p.E285K	.	.	36	7	39	0	.	93
DVL2	1856	bcgsc.ca	37	17	7134065	7134065	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	DVL2	NM_004422	exon2	c.C246T	p.N82N	.	.	88	6	116	0	.	659
F5	2153	ucsc.edu	37	1	169526090	169526090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	F5	NM_000130	exon6	c.C746T	p.A249V	.	.	43	4	43	0	.	157
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	3532454	3532454	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	FZR1	NM_001136198	exon10	c.C1048T	p.Q350X	.	.	51	18	68	0	.	227
GMCL1	64395	ucsc.edu	37	2	70057275	70057275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GMCL1	NM_178439	exon1	c.C251T	p.T84I	.	.	41	4	51	0	.	93
GPR98	84059	bcgsc.ca	37	5	89969978	89969978	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GPR98	NM_032119	exon23	c.T5037C	p.P1679P	.	.	125	6	137	0	.	103
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158242731	158242731	+	Missense_Mutation	SNP	G	G	T	rs147349807		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	GRIA2	NM_000826	exon6	c.G862T	p.A288S	.	.	81	23	109	0	G|1.000;T|0.000	515
HMCN1	83872	ucsc.edu;bcgsc.ca	37	1	186077704	186077704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HMCN1	NM_031935	exon71	c.G10964T	p.W3655L	.	.	53	5	76	0	.	113
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46688035	46688035	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HOXB7	NM_004502	exon1	c.G246T	p.P82P	.	.	127	34	156	0	.	90
HYAL2	8692	broad.mit.edu	37	3	50357563	50357563	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	HYAL2	NM_033158	exon3	c.T358A	p.Y120N	.	.	78	4	58	0	.	279
IL1F10	84639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113832387	113832387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	IL1F10	NM_173161	exon4	c.C206T	p.A69V	.	.	164	56	188	3	.	91
INSR	3643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7120659	7120659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	INSR	NM_000208	exon20	c.G3631A	p.G1211R	.	.	88	37	110	0	.	1381
JAK2	3717	ucsc.edu	37	9	5066680	5066680	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	JAK2	NM_004972	exon10	c.T1217C	p.M406T	.	.	47	4	43	0	.	75307
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	118281508	118281508	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	KIAA1210	NM_020721	exon2	c.A338G	p.D113G	.	.	62	9	55	0	.	67
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	.	.	60	4	73	0	.	90
LRCH1	23143	ucsc.edu	37	13	47224391	47224391	+	Silent	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRCH1	NM_015116	exon2	c.A363T	p.S121S	.	.	41	4	57	0	.	91
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	44209519	44209519	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRPPRC	NM_133259	exon2	c.T204C	p.I68I	.	.	207	12	253	0	.	93
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	71329548	71329548	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	LRRC49	NM_001199017	exon15	c.C1749T	p.S583S	.	.	349	31	407	0	.	91
MICAL2	9645	bcgsc.ca	37	11	12241764	12241764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	MICAL2	NM_014632	exon9	c.A965G	p.E322G	.	.	72	5	88	0	.	92
MPO	4353	broad.mit.edu	37	17	56357975	56357975	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	MPO	NM_000250	exon1	c.G145A	p.A49T	.	.	209	6	220	0	.	156
MYBPC1	4604	ucsc.edu	37	12	102060543	102060543	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	MYBPC1	NM_001254718	exon21	c.A2303T	p.D768V	.	.	45	4	57	0	.	94
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13406	13406	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	ENST00000361567	exon1	c.G1070A	p.R357Q	.	.	653	628	17	0	.	.
NOTCH2	4853	ucsc.edu	37	1	120458721	120458721	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NOTCH2	NM_024408	exon34	c.G6624A	p.Q2208Q	.	.	41	4	38	0	.	1441
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6602579	6602579	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NSUN2	NM_017755	exon18	c.T1992C	p.D664D	.	.	72	25	91	0	.	91
NXF3	56000	ucsc.edu	37	X	102337988	102337988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	NXF3	NM_022052	exon7	c.A635G	p.Q212R	.	.	36	4	47	0	.	205
OR56B4	196335	broad.mit.edu;bcgsc.ca	37	11	6129724	6129724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	OR56B4	NM_001005181	exon1	c.C716T	p.A239V	.	.	118	8	107	0	.	68
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176709306	176709306	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PAPPA2	NM_020318	exon14	c.C4125T	p.D1375D	.	.	69	9	81	0	.	548
PGBD4	161779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34394935	34394935	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PGBD4	NM_152595	exon1	c.A203C	p.D68A	.	.	64	25	63	0	.	90
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	bycluster	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	PIK3CA,bladder,carcinoma,0	PIK3CA	NM_006218	exon21	c.A3140G	p.H1047R	.	.	77	22	93	0	.	27752
PIWIL4	143689	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94352999	94352999	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PIWIL4	NM_152431	exon18	c.C2242A	p.Q748K	.	.	152	54	186	1	.	91
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	204214797	204214797	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PLEKHA6	NM_014935	exon14	c.G1978T	p.E660X	.	.	34	11	35	0	.	654
PRSS1	5644	ucsc.edu;bcgsc.ca	37	7	142458511	142458511	+	Missense_Mutation	SNP	G	G	T	rs138464021	byfrequency	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PRSS1	NM_002769	exon2	c.G146T	p.G49V	.	.	156	16	178	4	G|0.951;T|0.049	577
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52735240	52735240	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	PTGDR	NM_000953	exon1	c.G708A	p.P236P	.	.	48	12	34	0	.	524
RNR2	6053	broad.mit.edu	37	MT	2492	2492	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	.	.	.	.	.	.	740	125	70	0	.	.
RNR2	6053	broad.mit.edu	37	MT	3147	3147	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	.	.	.	.	.	.	656	618	27	0	.	.
ROBO3	64221	ucsc.edu	37	11	124744102	124744102	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ROBO3	NM_022370	exon12	c.A1921G	p.S641G	.	.	40	4	45	0	.	113
RPL15	6138	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	3	23960001	23960001	+	Silent	SNP	C	C	T	rs35608037	byfrequency	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	RPL15	NM_001253383	exon3	c.C243T	p.Y81Y	.	.	33	11	35	0	C|0.992;T|0.008	91
RPP40	10799	broad.mit.edu	37	6	5002407	5002407	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	RPP40	NM_006638	exon2	c.T196C	p.Y66H	.	.	101	5	148	0	.	90
SLC22A11	55867	broad.mit.edu	37	11	64329843	64329843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SLC22A11	NM_018484	exon4	c.C757T	p.R253W	.	.	51	4	57	0	.	91
SLC8A2	6543	broad.mit.edu	37	19	47951297	47951297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SLC8A2	NM_015063	exon4	c.T1532A	p.L511Q	.	.	68	5	63	0	.	94
SNED1	25992	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241979571	241979571	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	.	.	51	6	59	0	.	72
SNX2	6643	broad.mit.edu	37	5	122152993	122152993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SNX2	NM_003100	exon10	c.C931G	p.Q311E	.	.	66	5	83	0	.	226
SPCS1	28972	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52741737	52741737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	SPCS1	NM_014041	exon4	c.A419G	p.H140R	.	.	383	28	428	2	.	90
SSPO	23145	ucsc.edu	37	7	149511448	149511448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	NM_198455	exon72	c.G10199A	p.C3400Y	.	.	42	4	50	0	.	.
TBC1D9B	23061	ucsc.edu	37	5	179297398	179297398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TBC1D9B	NM_198868	exon16	c.C2582T	p.A861V	.	.	29	4	32	0	.	154
TECR	9524	ucsc.edu	37	19	14674899	14674899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TECR	NM_138501	exon6	c.A373G	p.T125A	.	.	38	4	35	0	.	90
TNKS	8658	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9578010	9578010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TNKS	NM_003747	exon12	c.A1876G	p.T626A	.	.	121	33	132	1	.	660
TNPO3	23534	broad.mit.edu	37	7	128633878	128633878	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TNPO3	NM_012470	exon9	c.A1249G	p.M417V	.	.	82	5	94	0	.	228
TRIM21	6737	ucsc.edu	37	11	4409554	4409554	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TRIM21	NM_003141	exon4	c.C711A	p.H237Q	.	.	38	4	44	0	.	229
TRIM49C	642612	ucsc.edu	37	11	89774252	89774252	+	Missense_Mutation	SNP	G	G	A	rs672762	bycluster;bysubmitter	TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	NM_001195234	exon8	c.G893A	p.S298N	.	.	84	13	124	8	G|0.500;A|0.500	.
TUBGCP6	85378	ucsc.edu	37	22	50666361	50666361	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	TUBGCP6	NM_020461	exon5	c.T1387A	p.F463I	.	.	43	4	35	0	.	93
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	.	NM_145301	exon3	c.G152A	p.C51Y	.	.	198	11	220	8	.	.
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101679570	101679570	+	Silent	SNP	T	T	C	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	UTP20	NM_014503	exon4	c.T237C	p.N79N	.	.	89	32	85	0	.	155
ZNF91	7644	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23557476	23557476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M8-01A-11D-A33Q-10	TCGA-G3-A7M8-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ebbad8e2-34d1-4dfb-9d3b-96d717f3c94d	5ce7cd8f-dec6-4766-bc13-35f2ff250c92	.	ZNF91	NM_003430	exon2	c.G121T	p.V41L	.	.	291	102	326	1	.	90
