Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94564351	94564351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ABCA4	NM_000350	exon6	c.T767C	p.V256A	.	.	55	21	56	0	.	162
ACP1	52	broad.mit.edu	37	2	275199	275199	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ACP1	NM_007099	exon4	c.G291T	p.L97L	.	.	131	4	122	0	.	523
ADRA1D	146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	4228867	4228867	+	Nonsense_Mutation	SNP	G	G	T	rs140080149	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ADRA1D	NM_000678	exon1	c.C738A	p.C246X	.	.	86	35	97	0	G|0.996;A|0.004	522
AGAP6	414189	broad.mit.edu	37	10	51768543	51768543	+	Missense_Mutation	SNP	T	T	C	rs76153144		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	AGAP6	NM_001077665	exon8	c.T658C	p.S220P	.	.	165	4	174	1	T|0.500;C|0.500	1
AKD1	221264	broad.mit.edu	37	6	109819128	109819128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	AKD1	NM_001145128	exon37	c.C5087A	p.A1696E	.	.	98	4	93	0	.	91
ANKRD13B	124930	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	27940598	27940598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANKRD13B	NM_152345	exon15	c.T1879C	p.X627Q	.	.	20	8	24	0	.	90
ANXA10	11199	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169108554	169108554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ANXA10	NM_007193	exon12	c.C944T	p.A315V	.	.	384	43	434	1	.	90
ARHGAP21	57584	bcgsc.ca	37	10	24884698	24884698	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARHGAP21	NM_020824	exon19	c.C3660T	p.S1220S	.	.	131	39	138	3	.	235
ARHGEF10	9639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	1871942	1871942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARHGEF10	NM_014629	exon21	c.C2390T	p.S797F	.	.	110	10	137	0	.	272
ARL14	80117	broad.mit.edu;mdanderson.org	37	3	160395171	160395171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARL14	NM_025047	exon1	c.C37T	p.Q13X	.	.	215	12	223	1	.	90
ARMC2	84071	bcgsc.ca	37	6	109233661	109233661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARMC2	NM_032131	exon10	c.A1250G	p.K417R	.	.	144	55	159	4	.	68
ARMC2	84071	bcgsc.ca	37	6	109233665	109233665	+	Silent	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARMC2	NM_032131	exon10	c.T1254A	p.G418G	.	.	146	58	160	4	.	68
ARMC2	84071	ucsc.edu;bcgsc.ca	37	6	109225474	109225474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ARMC2	NM_032131	exon8	c.C889T	p.H297Y	.	.	173	50	166	4	.	68
ASPN	54829	bcgsc.ca	37	9	95219654	95219654	+	Silent	SNP	C	C	T	rs148676537		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ASPN	NM_017680	exon8	c.G1059A	p.P353P	.	.	139	40	186	5	C|1.000;T|0.000	514
BAZ2B	29994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	160206490	160206490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	BAZ2B	NM_013450	exon28	c.C4592T	p.T1531I	.	.	134	11	135	0	.	94
BBS7	55212	bcgsc.ca	37	4	122780281	122780281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	BBS7	NM_018190	exon5	c.T394C	p.Y132H	.	.	209	75	241	5	.	91
C17orf75	64149	broad.mit.edu	37	17	30666908	30666908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C17orf75	NM_022344	exon3	c.C271T	p.R91C	.	.	70	4	70	0	.	23
C1orf170	84808	broad.mit.edu	37	1	915246	915246	+	RNA	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C1orf170	.	.	.	.	.	.	60	15	53	9	.	68
C2orf47	79568	broad.mit.edu;mdanderson.org	37	2	200820961	200820961	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C2orf47	NM_024520	exon2	c.G440T	p.G147V	.	.	18	4	32	0	.	90
C5orf60	285679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179069453	179069453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001142306	exon5	c.C721T	p.R241C	.	.	55	27	70	0	.	.
C8B	732	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	57406665	57406665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	C8B	NM_000066	exon9	c.A1255G	p.M419V	.	.	62	26	41	1	.	92
CCT8	10694	broad.mit.edu	37	21	30440001	30440001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CCT8	NM_006585	exon4	c.T257C	p.I86T	.	.	126	4	140	1	.	90
CDKL5	6792	bcgsc.ca	37	X	18622809	18622809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CDKL5	NM_003159	exon12	c.C1765T	p.H589Y	.	.	102	39	104	3	.	838
CELSR1	9620	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46782348	46782348	+	Silent	SNP	G	G	A	rs147425309		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CELSR1	NM_014246	exon19	c.C6690T	p.N2230N	.	.	97	57	82	1	G|1.000;A|0.000	525
CEP170B	283638	broad.mit.edu	37	14	105361198	105361198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001112726	exon19	c.C4568T	p.A1523V	.	.	46	3	36	0	.	.
CHMP7	91782	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	23104433	23104433	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHMP7	NM_152272	exon2	c.G225A	p.R75R	.	.	28	12	58	1	.	90
CHST13	166012	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	126260674	126260674	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CHST13	NM_152889	exon3	c.G279A	p.P93P	.	.	49	15	50	0	.	90
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7287981	7287981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CLSTN3	NM_014718	exon4	c.C442G	p.R148G	.	.	103	39	98	2	.	153
CNTLN	54875	ucsc.edu;bcgsc.ca	37	9	17340897	17340897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CNTLN	NM_017738	exon11	c.T1717C	p.Y573H	.	.	265	107	312	3	.	91
COX1	5742	broad.mit.edu	37	MT	6876	6876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	ENST00000361624	exon1	c.G973A	p.A325T	.	.	7	3	12	0	.	.
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	2	38301745	38301745	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	CYP1B1	NM_000104	exon2	c.C787T	p.Q263X	.	.	194	11	204	0	.	515
DDX19B	11269	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70363839	70363839	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DDX19B	NM_007242	exon9	c.G891A	p.L297L	.	.	115	30	148	1	.	226
DENND2C	163259	bcgsc.ca	37	1	115165635	115165635	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DENND2C	NM_001256404	exon6	c.C1029A	p.P343P	.	.	66	4	69	0	.	229
DFNB59	494513	broad.mit.edu	37	2	179325760	179325760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DFNB59	NM_001042702	exon7	c.T818C	p.L273P	.	.	147	4	143	0	.	22
DLST	1743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75359658	75359658	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	DLST	NM_001933	exon8	c.C564T	p.P188P	.	.	78	8	62	0	.	227
EEF1G	1937	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62334990	62334990	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001404	exon6	c.C533G	p.P178R	.	.	53	10	74	1	.	.
EIF4ENIF1	56478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31845450	31845450	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EIF4ENIF1	NM_019843	exon12	c.T1652G	p.L551W	.	.	72	24	77	0	.	91
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41574846	41574846	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EP300	NM_001429	exon31	c.T7131C	p.A2377A	.	.	63	22	87	0	.	2011
EP400	57634	broad.mit.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G	rs111782215	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EP400	NM_015409	exon47	c.A8226G	p.Q2742Q	.	.	88	6	94	3	A|0.995;G|0.005	520
EXOSC7	23016	broad.mit.edu;bcgsc.ca	37	3	45048999	45048999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	EXOSC7	NM_015004	exon7	c.G703T	p.V235F	.	.	66	5	79	0	.	90
FAM205B	389715	broad.mit.edu	37	9	34834814	34834814	+	RNA	SNP	C	C	G	rs525378	by2hit2allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	.	.	.	.	.	.	83	11	66	2	.	.
FAM208B	54906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5788372	5788372	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_017782	exon15	c.C2988T	p.Y996Y	.	.	51	5	82	0	.	.
FAM210A	125228	broad.mit.edu;ucsc.edu	37	18	13666480	13666480	+	Silent	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001098801	exon5	c.A818G	p.X273X	.	.	92	38	113	1	.	.
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45658377	45658377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	FANCM	NM_020937	exon20	c.G5152A	p.V1718M	.	.	176	77	174	0	.	569
FGF21	26291	ucsc.edu	37	19	49259710	49259710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	FGF21	NM_019113	exon1	c.G217A	p.A73T	.	.	28	1	12	0	.	522
GABRD	2563	broad.mit.edu	37	1	1957111	1957111	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GABRD	NM_000815	exon4	c.A404G	p.H135R	.	.	199	6	129	0	.	92
GALNT8	26290	bcgsc.ca	37	12	4854740	4854740	+	Missense_Mutation	SNP	G	G	T	rs71579265	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GALNT8	NM_017417	exon5	c.G1006T	p.D336Y	.	.	49	4	75	0	G|1.000;A|0.000	230
GLT1D1	144423	broad.mit.edu;bcgsc.ca	37	12	129360597	129360597	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GLT1D1	NM_144669	exon2	c.G207A	p.R69R	.	.	53	5	46	0	.	90
GPR56	9289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57685514	57685514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	GPR56	NM_001145773	exon3	c.G482C	p.S161T	.	.	55	20	55	1	.	90
HAO1	54363	broad.mit.edu	37	20	7894862	7894862	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HAO1	NM_017545	exon3	c.G494A	p.G165D	.	.	68	5	85	0	.	93
HECTD4	283450	ucsc.edu;bcgsc.ca	37	12	112622701	112622701	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_001109662	exon61	c.G9667C	p.A3223P	.	.	59	28	61	2	.	.
HEPACAM	220296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124794662	124794662	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HEPACAM	NM_152722	exon2	c.C389G	p.T130S	.	.	34	13	64	0	.	91
HEXIM1	10614	broad.mit.edu	37	17	43227088	43227088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HEXIM1	NM_006460	exon1	c.G531T	p.K177N	.	.	34	4	31	0	.	23
HMGB3	3149	mdanderson.org	37	X	150156360	150156360	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HMGB3	NM_005342	exon5	c.G576A	p.E192E	.	.	17	3	28	0	.	226
HSPH1	10808	bcgsc.ca	37	13	31722176	31722176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HSPH1	NM_006644	exon10	c.C1298T	p.T433I	.	.	144	51	131	3	.	90
HYOU1	10525	broad.mit.edu;bcgsc.ca	37	11	118925964	118925964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	HYOU1	NM_006389	exon5	c.G352A	p.A118T	.	.	78	5	111	0	.	90
IFT81	28981	bcgsc.ca	37	12	110574580	110574580	+	Splice_Site	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IFT81	NM_014055	exon8	c.697-1G>C	.	.	.	252	75	270	5	.	91
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81593848	81593848	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IL16	NM_001172128	exon15	c.T3313G	p.L1105V	.	.	63	19	56	0	.	653
IRX2	153572	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	2751518	2751518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	IRX2	NM_001134222	exon1	c.C10A	p.P4T	.	.	23	10	32	0	.	226
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	31414896	31414896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ITGAD	NM_005353	exon7	c.C634T	p.Q212X	.	.	76	27	62	0	.	226
KCNS3	3790	bcgsc.ca	37	2	18113275	18113275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	KCNS3	NM_002252	exon3	c.G1000T	p.G334C	.	.	102	40	86	2	.	94
KLHL29	114818	bcgsc.ca	37	2	23865257	23865257	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	KLHL29	NM_052920	exon5	c.G477T	p.L159L	.	.	116	52	116	4	.	70
KRTAP4-5	85289	ucsc.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	KRTAP4-5	NM_033188	exon1	c.T235A	p.C79S	.	.	46	13	37	0	A|0.354;T|0.646	90
KRTAP5-10	387273	broad.mit.edu	37	11	71276934	71276934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	KRTAP5-10	NM_001012710	exon1	c.A301C	p.K101Q	.	.	62	4	87	5	.	91
LAIR2	3904	broad.mit.edu	37	19	55020248	55020248	+	Missense_Mutation	SNP	G	G	C	rs12949	byfrequency;by1000genomes	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LAIR2	NM_002288	exon4	c.G368C	p.S123T	.	.	51	5	43	0	G|0.046;C|0.954	91
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	6985309	6985309	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LAMA1	NM_005559	exon39	c.A5587T	p.N1863Y	.	.	71	23	77	1	.	149
LCE4A	199834	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152681721	152681721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LCE4A	NM_178356	exon1	c.G170A	p.G57D	.	.	118	32	82	1	.	90
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	55148029	55148029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LILRB1	NM_001081637	exon14	c.C1738T	p.P580S	.	.	122	10	134	0	.	137
LOC255025	0	bcgsc.ca	37	3	94656737	94656737	+	RNA	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	.	.	.	.	.	.	65	18	72	2	.	.
LOC642236	0	bcgsc.ca	37	9	68433493	68433493	+	RNA	SNP	C	C	T	rs75971144		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	.	.	.	.	.	.	294	13	341	6	C|0.500;T|0.500	.
LRCH2	57631	broad.mit.edu;bcgsc.ca	37	X	114422835	114422835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LRCH2	NM_001243963	exon2	c.C448T	p.P150S	.	.	624	18	673	1	.	131
LRIT3	345193	broad.mit.edu	37	4	110772859	110772859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LRIT3	NM_198506	exon2	c.C316A	p.Q106K	.	.	67	5	74	3	.	90
LRRCC1	85444	broad.mit.edu	37	8	86053693	86053693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LRRCC1	NM_033402	exon18	c.G2917T	p.A973S	.	.	95	4	141	0	.	90
LTBP1	4052	broad.mit.edu	37	2	33488393	33488393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	LTBP1	NM_206943	exon15	c.G2551T	p.V851F	.	.	72	3	71	0	.	230
MAGEE1	57692	bcgsc.ca	37	X	75649243	75649243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MAGEE1	NM_020932	exon1	c.C920T	p.S307F	.	.	80	29	95	3	.	262
MAGEE1	57692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	75648383	75648383	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MAGEE1	NM_020932	exon1	c.G60A	p.A20A	.	.	138	15	152	0	.	262
MARCH6	10299	bcgsc.ca	37	5	10402495	10402495	+	Splice_Site	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MARCH6	NM_001270660	exon12	c.910-1G>A	.	.	.	188	78	239	5	.	501
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18159634	18159634	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MRGPRX3	NM_054031	exon3	c.G885T	p.L295L	.	.	53	19	51	0	.	92
MYO5C	55930	bcgsc.ca	37	15	52537596	52537596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	MYO5C	NM_018728	exon18	c.C2133G	p.S711R	.	.	69	11	100	0	.	145
NCKAP5L	57701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50186524	50186524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NCKAP5L	NM_001037806	exon11	c.C3586T	p.P1196S	.	.	96	29	57	0	.	68
NCOR2	9612	broad.mit.edu	37	12	124824871	124824871	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NCOR2	NM_006312	exon38	c.G5457A	p.T1819T	.	.	34	10	45	1	.	229
NEK9	91754	broad.mit.edu	37	14	75590774	75590774	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NEK9	NM_033116	exon2	c.G372A	p.L124L	.	.	60	4	77	0	.	359
NIPBL	25836	broad.mit.edu;ucsc.edu	37	5	36976361	36976361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NIPBL	NM_015384	exon9	c.C1352T	p.S451F	.	.	52	13	55	2	.	293
NOA1	84273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57842963	57842963	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_032313	exon1	c.G789A	p.R263R	.	.	64	10	84	0	.	.
NOB1	28987	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69776359	69776359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NOB1	NM_014062	exon9	c.C1115T	p.P372L	.	.	80	6	117	1	.	90
NUP93	9688	broad.mit.edu;mdanderson.org	37	16	56870513	56870513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	NUP93	NM_014669	exon17	c.C1783T	p.P595S	.	.	33	4	47	0	.	205
OMP	4975	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	76814313	76814313	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_006189	exon1	c.T428C	p.V143A	.	.	43	12	48	1	.	.
OR5P2	120065	bcgsc.ca	37	11	7817655	7817655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR5P2	NM_153444	exon1	c.C835T	p.P279S	.	.	206	7	223	3	.	496
OR5T2	219464	ucsc.edu;bcgsc.ca	37	11	56000549	56000549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR5T2	NM_001004746	exon1	c.T113C	p.L38P	.	.	86	37	103	2	.	70
OR6M1	390261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123676932	123676932	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OR6M1	NM_001005325	exon1	c.C126A	p.T42T	.	.	100	15	129	0	.	70
OS9	10956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58087958	58087958	+	Missense_Mutation	SNP	C	C	T	rs150848860	byfrequency;alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	OS9	NM_001261423	exon1	c.C14T	p.T5M	.	.	124	32	80	0	C|0.997;G|0.003	493
PAPLN	89932	broad.mit.edu	37	14	73729395	73729395	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PAPLN	NM_173462	exon18	c.C2502T	p.D834D	.	.	51	4	74	0	.	70
PCDH17	27253	bcgsc.ca	37	13	58208334	58208334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PCDH17	NM_001040429	exon1	c.G1654A	p.V552M	.	.	71	21	79	2	.	97
PDCD7	10081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	65411134	65411134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PDCD7	NM_005707	exon5	c.G1379A	p.G460D	.	.	80	37	73	1	.	227
PDPR	55066	broad.mit.edu	37	16	70170285	70170285	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PDPR	NM_017990	exon10	c.G1186T	p.G396X	.	.	145	4	187	0	.	135
PHACTR3	116154	broad.mit.edu;ucsc.edu;mdanderson.org	37	20	58349512	58349512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PHACTR3	NM_080672	exon7	c.G1141A	p.D381N	.	.	54	7	76	1	.	93
PHLPP2	23035	broad.mit.edu	37	16	71683623	71683623	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PHLPP2	NM_015020	exon18	c.A3142C	p.T1048P	.	.	121	14	101	13	.	91
PLCH1	23007	broad.mit.edu;bcgsc.ca	37	3	155200721	155200721	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PLCH1	NM_001130960	exon23	c.G3118A	p.G1040R	.	.	106	7	104	1	.	151
PNMAL1	55228	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46973078	46973078	+	Silent	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PNMAL1	NM_018215	exon2	c.T1215A	p.P405P	.	.	53	20	53	1	.	68
POLE	5426	bcgsc.ca	37	12	133201295	133201295	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	POLE	NM_006231	exon49	c.G6849A	p.Q2283Q	.	.	85	28	68	2	.	233
PPAPDC2	403313	hgsc.bcm.edu	37	9	4662394	4662394	+	Missense_Mutation	SNP	A	A	G	rs34250374	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PPAPDC2	NM_203453	exon1	c.A19G	p.S7G	.	.	5	4	2	0	A|0.895;G|0.105	90
PPIL2	23759	broad.mit.edu;ucsc.edu	37	22	22051036	22051036	+	Splice_Site	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PPIL2	.	.	.	.	.	.	6	3	15	0	.	92
PPP1R10	5514	broad.mit.edu;bcgsc.ca	37	6	30574619	30574619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PPP1R10	NM_002714	exon7	c.G397A	p.A133T	.	.	170	11	196	1	.	660
PRICKLE2	166336	broad.mit.edu;bcgsc.ca	37	3	64085071	64085071	+	Missense_Mutation	SNP	T	T	C	rs148689951	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRICKLE2	NM_198859	exon8	c.A2191G	p.S731G	.	.	76	30	66	1	T|0.999;C|0.001	95
PRKDC	5591	ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48732069	48732069	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRKDC	.	.	.	.	.	.	163	27	165	1	.	1515
PRSS35	167681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84233979	84233979	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PRSS35	NM_153362	exon2	c.G819A	p.L273L	.	.	56	17	66	1	.	91
PSMC6	5706	bcgsc.ca	37	14	53187606	53187606	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	PSMC6	NM_002806	exon11	c.A847T	p.T283S	.	.	283	94	335	6	.	91
R3HDM4	91300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	900139	900139	+	Silent	SNP	G	G	A	rs199817764		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_138774	exon5	c.C483T	p.P161P	.	.	52	27	60	0	G|0.999;A|0.001	.
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22347988	22347988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RAPGEF5	NM_012294	exon5	c.T191A	p.L64H	.	.	64	19	61	0	.	206
RP1L1	94137	ucsc.edu;bcgsc.ca	37	8	10467415	10467415	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RP1L1	NM_178857	exon4	c.G4193T	p.G1398V	.	.	41	4	49	0	.	139
RRM1	6240	hgsc.bcm.edu	37	11	4148364	4148364	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	RRM1	NM_001033	exon14	c.G1570T	p.A524S	.	.	91	4	102	0	.	227
SAMD9L	219285	bcgsc.ca	37	7	92760997	92760997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SAMD9L	NM_152703	exon5	c.G4288A	p.A1430T	.	.	118	30	125	3	.	94
SART3	9733	broad.mit.edu	37	12	108919350	108919350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SART3	NM_014706	exon17	c.C2407A	p.L803M	.	.	95	4	134	0	.	91
SFT2D2	375035	bcgsc.ca	37	1	168205972	168205972	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SFT2D2	NM_199344	exon6	c.T377C	p.L126P	.	.	183	97	146	3	.	69
SHROOM4	57477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50378093	50378093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SHROOM4	NM_020717	exon4	c.G980A	p.C327Y	.	.	101	32	76	0	.	131
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	66268836	66268836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC16A6	NM_001174166	exon5	c.T449C	p.I150T	.	.	135	32	107	0	.	90
SLC45A3	85414	broad.mit.edu;bcgsc.ca	37	1	205632672	205632672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC45A3	NM_033102	exon3	c.G247A	p.G83S	.	.	56	4	52	0	.	98
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48497559	48497559	+	Silent	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SLC9A8	NM_001260491	exon13	c.C1305T	p.I435I	.	.	113	34	115	0	.	91
SNTG2	54221	bcgsc.ca	37	2	1204904	1204904	+	Missense_Mutation	SNP	C	C	A	rs200559818	alternate_allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	SNTG2	NM_018968	exon9	c.C707A	p.T236K	.	.	67	36	56	2	C|0.999;T|0.001	136
ST7L	54879	bcgsc.ca	37	1	113140691	113140691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ST7L	NM_138729	exon5	c.G524A	p.G175D	.	.	129	52	135	4	.	90
STRN4	29888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47231256	47231256	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	STRN4	NM_001039877	exon8	c.C1048G	p.R350G	.	.	51	13	50	0	.	90
TCEB3C	162699	bcgsc.ca	37	18	44555051	44555051	+	Missense_Mutation	SNP	T	T	C	rs142051538	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TCEB3C	NM_145653	exon1	c.A1163G	p.E388G	.	.	679	21	759	18	T|0.999;C|0.001	68
TINAG	27283	ucsc.edu;bcgsc.ca	37	6	54191636	54191636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TINAG	NM_014464	exon4	c.G546A	p.M182I	.	.	162	50	181	3	.	93
TMEM30B	161291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	61747549	61747549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TMEM30B	NM_001017970	exon1	c.G317A	p.G106D	.	.	25	9	14	0	.	90
TNR	7143	ucsc.edu;bcgsc.ca	37	1	175335180	175335180	+	Silent	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TNR	NM_003285	exon11	c.C2148T	p.Y716Y	.	.	209	68	172	3	.	324
TOP2A	7153	broad.mit.edu	37	17	38552660	38552660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TOP2A	NM_001067	exon28	c.A3595G	p.K1199E	.	.	196	4	142	1	.	655
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	TUBA1C	NM_032704	exon4	c.G492A	p.K164K	.	.	365	27	325	19	G|0.998;A|0.002	90
USP13	8975	broad.mit.edu	37	3	179399783	179399783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	USP13	NM_003940	exon2	c.G286T	p.V96L	.	.	77	3	87	0	.	659
WASL	8976	broad.mit.edu	37	7	123324631	123324631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	WASL	NM_003941	exon11	c.A1460T	p.E487V	.	.	422	7	475	1	.	90
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38385769	38385769	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	NM_031951	exon4	c.A457T	p.M153L	.	.	45	22	65	0	.	.
WHAMMP3	339005	broad.mit.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs692550	bycluster;bysubmitter;by2hit2allele	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	.	.	.	.	.	.	43	4	51	1	.	.
ZNF28	7576	broad.mit.edu	37	19	53303332	53303332	+	Missense_Mutation	SNP	C	C	T	rs142442328	byfrequency	TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF28	NM_006969	exon4	c.G1766A	p.R589Q	.	.	95	7	125	1	C|0.998;T|0.002	91
ZNF324B	388569	broad.mit.edu	37	19	58967301	58967301	+	Silent	SNP	G	G	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF324B	NM_207395	exon4	c.G990T	p.R330R	.	.	117	31	102	1	.	91
ZNF451	26036	broad.mit.edu	37	6	57018812	57018812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF451	NM_001031623	exon13	c.G3037A	p.A1013T	.	.	64	5	76	1	.	93
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62594086	62594086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	ZNF512B	NM_020713	exon13	c.G2017A	p.G673S	.	.	69	21	77	0	.	90
PMVK	10654	bcgsc.ca	37	1	154909135	154909136	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-GJ-A6C0-01A-12D-A30V-10	TCGA-GJ-A6C0-10A-01D-A30V-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	36b33892-0a4d-42f1-8a5c-b51efd4d40a1	6fbe0c9d-a6ae-4737-8e50-926b0b027cdb	.	.	.	.	.	p.R9L	.	.	.	.	.	.	.	
