Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACSS2	55902	hgsc.bcm.edu	37	20	33464506	33464506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ACSS2	NM_001076552	exon1	c.G58A	p.A20T	.	.	9	6	1	0	.	226
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62286109	62286109	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	AHNAK	NM_001620	exon5	c.15780delC	p.P5260fs	.	.	87	12	101	0	.	109
ALDOB	229	broad.mit.edu;bcgsc.ca	37	9	104193055	104193056	+	Splice_Site	DEL	CA	CA	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ALDOB	.	.	.	.	.	.	59	12	49	0	.	226
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21259995	21259995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	APOB	NM_000384	exon6	c.C670T	p.P224S	.	.	219	24	204	0	.	175
ATP5B	506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57037684	57037684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATP5B	NM_001686	exon4	c.A544G	p.I182V	.	.	179	33	131	0	.	91
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	117486766	117486766	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ATRNL1	NM_207303	exon27	c.T3804C	p.L1268L	.	.	37	10	20	0	.	96
C19orf55	148137	bcgsc.ca	37	19	36258765	36258765	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	C19orf55	NM_001039887	exon9	c.G1018A	p.E340K	.	.	97	11	64	4	.	23
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563360	121563360	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	C6orf170	NM_152730	exon18	c.C2144T	p.A715V	.	.	50	7	43	0	.	92
C7orf10	79783	bcgsc.ca	37	7	40314165	40314165	+	Silent	SNP	G	G	A	rs12669315	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	C7orf10	NM_001193313	exon8	c.G651A	p.L217L	.	.	205	7	174	0	G|0.683;A|0.317	24
CDC20B	166979	broad.mit.edu	37	5	54468809	54468809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CDC20B	NM_001170402	exon1	c.G20A	p.R7H	.	.	142	6	104	0	.	90
CDH9	1007	broad.mit.edu	37	5	26881641	26881641	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CDH9	NM_016279	exon12	c.C1974T	p.T658T	.	.	99	3	73	0	.	99
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125885319	125885319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CDON	NM_016952	exon7	c.C1015T	p.P339S	.	.	272	48	164	0	.	158
CELSR1	9620	hgsc.bcm.edu	37	22	46787555	46787555	+	Silent	SNP	G	G	A	rs150599618	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CELSR1	NM_014246	exon15	c.C6123T	p.A2041A	.	.	4	4	0	0	G|0.999;A|0.001	525
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49054803	49054803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CEP152	NM_014985	exon18	c.G2347A	p.A783T	.	.	78	9	58	0	.	70
CIB4	130106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26852279	26852279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIB4	NM_001029881	exon3	c.G185A	p.R62Q	.	.	96	19	77	0	.	131
CIRBP	1153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	1271998	1271998	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CIRBP	NM_001280	exon6	c.450delC	p.G150fs	.	.	456	86	391	0	.	226
COPG1	22820	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	128991183	128991183	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_016128	exon20	c.G2083T	p.A695S	.	.	327	54	256	2	.	.
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43166474	43166474	+	Silent	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	CUL9	NM_015089	exon12	c.C2931A	p.P977P	.	.	72	12	42	0	.	529
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124335946	124335946	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DMBT1	NM_007329	exon7	c.G315A	p.V105V	.	.	120	22	70	0	.	494
DNAH12	201625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57391435	57391435	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DNAH12	NM_178504	exon41	c.A6464G	p.H2155R	.	.	121	26	90	0	.	47
DOCK1	1793	broad.mit.edu;bcgsc.ca	37	10	129183066	129183066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DOCK1	NM_001380	exon38	c.G3757A	p.V1253M	.	.	201	12	170	1	.	698
DPP6	1804	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154002597	154002597	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPP6	NM_001936	exon1	c.G18T	p.E6D	.	.	92	18	60	1	.	652
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	134015481	134015481	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DPYSL4	NM_006426	exon11	c.T1142G	p.V381G	.	.	120	11	87	0	.	514
DSPP	1834	hgsc.bcm.edu	37	4	88537069	88537070	+	In_Frame_Ins	INS	-	-	GATAGCAGC	rs200486992	alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	DSPP	NM_014208	exon5	c.3255_3256insGATAGCAGC	p.S1085delinsSDSS	.	.	144	83	128	0	.	90
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31851702	31851702	+	Missense_Mutation	SNP	C	C	T	rs146726232		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EHMT2	NM_006709	exon22	c.G2797A	p.V933M	.	.	134	17	80	0	C|1.000;T|0.000	91
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34797717	34797717	+	Missense_Mutation	SNP	G	G	T	rs140677677	by1000genomes;alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EPB41L1	NM_001258329	exon16	c.G1976T	p.R659L	.	.	105	26	82	1	G|0.999;A|0.000	93
EPX	8288	broad.mit.edu	37	17	56281674	56281674	+	Missense_Mutation	SNP	G	G	A	rs137940518	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EPX	NM_000502	exon12	c.G2038A	p.G680S	.	.	111	4	98	0	G|0.996;A|0.004	92
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	67631603	67631603	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ETAA1	NM_019002	exon5	c.G1789C	p.D597H	.	.	81	11	73	0	.	156
EXOC5	10640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	57698355	57698355	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	EXOC5	NM_006544	exon11	c.A1017G	p.K339K	.	.	93	8	72	0	.	137
FAM157A	728262	hgsc.bcm.edu	37	3	197880164	197880164	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001145248	exon2	c.G243A	p.Q81Q	.	.	430	47	352	0	.	.
FCGR3B	2215	ucsc.edu	37	1	161596014	161596014	+	Silent	SNP	A	A	G	rs71632957	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FCGR3B	NM_001244753	exon4	c.T606C	p.D202D	.	.	178	32	108	8	A|0.987;G|0.013	22
FECH	2235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55226447	55226447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FECH	NM_001012515	exon7	c.T752A	p.L251Q	.	.	62	11	49	0	.	90
FLOT1	10211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30698721	30698721	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	FLOT1	NM_005803	exon9	c.C880G	p.L294V	.	.	53	6	31	0	.	90
FMN2	56776	mdanderson.org	37	1	240371223	240371223	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	FMN2,nipple,malignant_melanoma,+2	FMN2	NM_020066	exon5	c.C3111T	p.P1037P	.	.	24	3	18	0	.	145
GABBR2	9568	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101340352	101340352	+	Silent	SNP	G	G	A	rs145095054	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GABBR2	NM_005458	exon2	c.C324T	p.C108C	.	.	104	19	105	1	G|1.000;A|0.000	518
GABRQ	55879	broad.mit.edu	37	X	151821227	151821227	+	Missense_Mutation	SNP	G	G	A	rs199649217		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GABRQ	NM_018558	exon9	c.G1382A	p.R461Q	.	.	294	7	145	2	G|0.999;A|0.001	133
GDPD5	81544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75150967	75150967	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GDPD5	NM_030792	exon15	c.C1513T	p.L505L	.	.	163	27	107	0	.	91
GJD2	57369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	35044889	35044889	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GJD2	NM_020660	exon2	c.C756T	p.V252V	.	.	276	37	213	0	.	90
GP5	2814	broad.mit.edu	37	3	194118979	194118979	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GP5	NM_004488	exon2	c.C33T	p.L11L	.	.	100	4	69	0	.	155
GPRIN2	9721	ucsc.edu	37	10	46999030	46999030	+	Silent	SNP	C	C	T	rs4925989	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	GPRIN2	NM_014696	exon3	c.C150T	p.A50A	.	.	50	23	15	3	C|0.500;T|0.500	90
HECTD4	283450	broad.mit.edu;bcgsc.ca	37	12	112708155	112708155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001109662	exon12	c.C1619T	p.T540I	.	.	249	8	154	1	.	.
HTR1E	3354	broad.mit.edu;bcgsc.ca	37	6	87725469	87725469	+	Silent	SNP	C	C	T	rs146428063	alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	HTR1E	NM_000865	exon2	c.C417T	p.A139A	.	.	184	6	154	0	C|1.000;A|0.000	93
IFI16	3428	hgsc.bcm.edu;bcgsc.ca	37	1	159002321	159002321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IFI16	NM_005531	exon7	c.A1169G	p.K390R	.	.	41	4	36	0	.	91
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	76731919	76731919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	IMPG1	NM_001563	exon6	c.C580A	p.L194I	.	.	65	12	63	0	.	93
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26816709	26816709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITPR2	NM_002223	exon15	c.T1622G	p.L541R	.	.	94	13	58	0	.	542
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	35183471	35183471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ITSN1	NM_001001132	exon21	c.G2512T	p.V838L	.	.	179	36	146	0	.	94
KIAA0895L	653319	broad.mit.edu	37	16	67214370	67214370	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KIAA0895L	NM_001040715	exon2	c.C144T	p.P48P	.	.	94	4	52	0	.	68
KIF26A	26153	hgsc.bcm.edu	37	14	104644901	104644901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KIF26A	NM_015656	exon13	c.C5125T	p.R1709C	.	.	8	6	3	0	.	24
KRT16P2	400578	broad.mit.edu;ucsc.edu	37	17	16734855	16734855	+	RNA	SNP	C	C	T	rs688852	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	.	.	.	113	13	61	1	C|0.758;T|0.242	.
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39502874	39502874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT33A	NM_004138	exon6	c.G923A	p.S308N	.	.	87	23	61	0	.	90
KRT36	8689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39643887	39643887	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	KRT36	NM_003771	exon4	c.C802T	p.Q268X	.	.	209	27	137	0	.	90
KRTAP5-4	387267	broad.mit.edu	37	11	1643036	1643036	+	Silent	SNP	A	A	C	rs58877168		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001012709	exon1	c.T288G	p.G96G	.	.	36	6	23	1	.	.
LEFTY1	10637	bcgsc.ca	37	1	226076566	226076566	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LEFTY1	NM_020997	exon1	c.C201T	p.R67R	.	.	141	68	50	1	.	90
LPA	4018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160966524	160966524	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPA	NM_005577	exon34	c.C5346T	p.C1782C	.	.	133	6	107	0	.	74
LPGAT1	9926	hgsc.bcm.edu;broad.mit.edu	37	1	211952355	211952355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LPGAT1	NM_014873	exon6	c.A759G	p.I253M	.	.	80	4	60	0	.	92
LRRC58	116064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	120067725	120067725	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001099678	exon1	c.C366A	p.L122L	.	.	73	14	31	0	.	.
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7964686	7964686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	LRRC8E	NM_001268284	exon4	c.C1279T	p.P427S	.	.	55	9	27	0	.	92
MAGI3	260425	ucsc.edu	37	1	114216085	114216085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MAGI3	NM_152900	exon19	c.C3187T	p.H1063Y	.	.	35	4	31	0	.	524
MIR302A	407028	ucsc.edu;mdanderson.org	37	4	113569387	113569387	+	RNA	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	.	.	.	157	29	148	0	.	.
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36219035	36219035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MLL4	NM_014727	exon19	c.G4534A	p.D1512N	.	.	112	16	102	0	.	697
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	13126733	13126733	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MPDZ	NM_003829	exon33	c.T4503C	p.D1501D	.	.	152	26	91	0	.	231
MTERFD3	80298	broad.mit.edu	37	12	107372431	107372431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MTERFD3	NM_001033050	exon3	c.G62A	p.R21Q	.	.	122	4	75	0	.	68
MTMR6	9107	broad.mit.edu	37	13	25835847	25835847	+	Missense_Mutation	SNP	G	G	C	rs149526134	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MTMR6	NM_004685	exon6	c.C685G	p.P229A	.	.	83	4	69	0	G|0.999;C|0.001	94
MUC4	4585	bcgsc.ca	37	3	195511512	195511512	+	Silent	SNP	T	T	C	rs200426789		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	MUC4	NM_018406	exon2	c.A6939G	p.A2313A	.	.	185	15	119	2	T|0.998;C|0.002	90
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NEFH	NM_021076	exon4	c.A1965T	p.P655P	.	.	323	93	227	2	A|0.500;T|0.500	90
NUB1	51667	broad.mit.edu	37	7	151042484	151042484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUB1	NM_016118	exon2	c.G121A	p.E41K	.	.	113	3	120	0	.	226
NUBPL	80224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	32257020	32257020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUBPL	NM_025152	exon7	c.A548G	p.D183G	.	.	75	13	50	0	.	226
NUP98	4928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3735109	3735109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	NUP98	NM_005387	exon19	c.C2567T	p.S856L	.	.	147	20	117	1	.	703
OBSCN	84033	ucsc.edu	37	1	228504472	228504472	+	Missense_Mutation	SNP	T	T	C	rs1188732	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	OBSCN	NM_001271223	exon62	c.T16219C	p.C5407R	.	.	41	18	11	1	T|0.269;C|0.731	403
PCDHB4	56131	hgsc.bcm.edu;mdanderson.org	37	5	140503231	140503231	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PCDHB4	NM_018938	exon1	c.C1651T	p.L551L	.	.	19	4	8	0	.	93
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	208269429	208269429	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PLXNA2	NM_025179	exon8	c.G1927T	p.G643W	.	.	179	17	109	0	.	92
PMS1	5378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	190742031	190742031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PMS1	NM_000534	exon13	c.A2668G	p.M890V	.	.	152	16	111	1	.	1396
POU5F1B	5462	broad.mit.edu	37	8	128428638	128428638	+	Missense_Mutation	SNP	G	G	A	rs75641460		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_001159542	exon1	c.G527A	p.G176E	.	.	108	3	54	0	.	.
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46857241	46857241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PPP5C	NM_006247	exon2	c.G358C	p.E120Q	.	.	128	24	62	0	.	227
PTPRN2	5799	ucsc.edu	37	7	157959636	157959636	+	Silent	SNP	G	G	A	rs1130498	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	PTPRN2	NM_130843	exon6	c.C897T	p.S299S	.	.	47	4	44	0	G|0.222;A|0.778	295
RAB4A	5867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	229434759	229434759	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	RAB4A	NM_004578	exon6	c.G481T	p.E161X	.	.	155	23	85	0	.	182
SDK1	221935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4277393	4277393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SDK1	NM_152744	exon42	c.A6107G	p.K2036R	.	.	287	51	205	0	.	138
SLC10A7	84068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	147179851	147179851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC10A7	NM_001029998	exon11	c.G986A	p.R329K	.	.	97	12	64	0	.	22
SLC17A9	63910	broad.mit.edu	37	20	61595009	61595009	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC17A9	NM_022082	exon7	c.G799C	p.E267Q	.	.	109	14	71	2	.	92
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131721132	131721132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC22A5	NM_003060	exon4	c.C765G	p.D255E	.	.	274	78	151	0	.	90
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18001723	18001723	+	Silent	SNP	G	G	A	rs149937279	alternate_allele	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SLC5A5	NM_000453	exon14	c.G1680A	p.P560P	.	.	78	20	64	0	G|1.000;C|0.000	93
SPATA13	221178	broad.mit.edu	37	13	24797913	24797913	+	Silent	SNP	C	C	T	rs1220546	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SPATA13	NM_001166271	exon2	c.C846T	p.D282D	.	.	162	5	110	1	C|0.720;T|0.280	229
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	24861041	24861041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SPATA13	NM_001166271	exon7	c.A2620G	p.M874V	.	.	140	27	112	0	.	229
SPTB	6710	ucsc.edu	37	14	65216069	65216069	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SPTB	NM_001024858	exon35	c.G6942A	p.K2314K	.	.	30	11	14	2	.	100
SRRT	51593	broad.mit.edu;bcgsc.ca	37	7	100473251	100473274	+	In_Frame_Del	DEL	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GACAAGTTCAGAAGAGAGCGCAGC	GACAAGTTCAGAAGAGAGCGCAGC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	SRRT	NM_001128853	exon2	c.40_63del	p.14_21del	.	.	161	9	121	0	.	92
TIPARP	25976	bcgsc.ca	37	3	156422746	156422766	+	In_Frame_Del	DEL	TCATGGCATGAGAAGGCCCCC	TCATGGCATGAGAAGGCCCCC	-	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	TCATGGCATGAGAAGGCCCCC	TCATGGCATGAGAAGGCCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	TIPARP	NM_015508	exon6	c.1800_1820del	p.600_607del	.	.	159	6	126	0	.	523
TMEM177	80775	broad.mit.edu	37	2	120438981	120438981	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	TMEM177	NM_030577	exon2	c.C552T	p.G184G	.	.	65	4	59	0	.	91
TPH2	121278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	72416191	72416191	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	TPH2	NM_173353	exon9	c.A1081T	p.T361S	.	.	58	8	67	0	.	93
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	6495513	6495513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	NM_006087	exon4	c.G997A	p.V333M	.	.	76	8	61	0	.	.
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49849633	49849633	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	UBA7	NM_003335	exon7	c.G701T	p.G234V	.	.	196	32	165	0	.	228
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49321560	49321560	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	USP4	NM_003363	exon19	c.C2400T	p.P800P	.	.	253	37	202	0	.	660
VWC2	375567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	49951654	49951654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	VWC2	NM_198570	exon4	c.C851T	p.A284V	.	.	143	22	141	0	.	514
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	59029036	59029036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZBTB45	NM_032792	exon2	c.C5T	p.A2V	.	.	127	6	94	0	.	90
ZFPM2	23414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814199	106814199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZFPM2	NM_012082	exon8	c.C1889T	p.T630I	.	.	209	28	106	1	.	139
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	25655887	25655887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZNF337	NM_015655	exon5	c.C2037G	p.H679Q	.	.	179	42	148	1	.	90
ZNF471	57573	bcgsc.ca	37	19	57036678	57036678	+	Silent	SNP	G	G	A	rs3752177	byfrequency	TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	ZNF471	NM_020813	exon5	c.G1242A	p.S414S	.	.	93	5	84	0	A|0.209;G|0.791	154
THRSP	7069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	77774945	77774946	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	p.R7G	.	.	.	.	.	.	.	
TPTE	7179	bcgsc.ca	37	21	11029604	11029605	+	RNA	DNP	GA	GA	TG	novel		TCGA-HP-A5MZ-01A-21D-A27I-10	TCGA-HP-A5MZ-10A-01D-A27I-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c36213e4-c057-46f5-ada5-f1f921855bb4	09ea881b-e60d-4cbe-9c35-d556da8bf86c	.	.	.	.	.	.	.	.	.	.	.	.	.	
