Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB11	8647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	169826676	169826676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ABCB11	NM_003742	exon15	c.A1688G	p.Q563R	.	.	146	36	235	3	.	139
ACCS	84680	bcgsc.ca	37	11	44104981	44104981	+	Missense_Mutation	SNP	C	C	T	rs3107275	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACCS	NM_032592	exon14	c.C1262T	p.P421L	.	.	94	7	120	0	C|0.575;T|0.425	155
ACTN3	89	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66322635	66322635	+	RNA	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACTN3	.	.	.	.	.	.	115	27	134	0	.	90
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	148680560	148680560	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ACVR2A	NM_001616	exon9	c.A1096G	p.M366V	.	.	97	38	168	0	.	831
ADAM8	101	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135082352	135082352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ADAM8	NM_001109	exon19	c.C1963T	p.P655S	.	.	72	25	69	1	.	90
AIFM1	9131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129264035	129264035	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	AIFM1	NM_004208	exon15	c.C1680T	p.Y560Y	.	.	251	33	229	0	.	586
AKAP17A	8227	ucsc.edu;bcgsc.ca	37	X	1719897	1719897	+	Missense_Mutation	SNP	C	C	G	rs28661622		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	AKAP17A	NM_005088	exon5	c.C1498G	p.P500A	.	.	23	4	40	0	C|0.460;G|0.540	40
ALK	238	bcgsc.ca	37	2	29416481	29416481	+	Missense_Mutation	SNP	T	T	C	rs1881420	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ALK	NM_004304	exon29	c.A4472G	p.K1491R	.	.	226	9	282	1	T|0.564;G|0.083	3833
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4219685	4219685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANKRD24	NM_133475	exon19	c.C3101T	p.A1034V	.	.	122	38	148	0	.	68
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	22272304	22272304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ANO5	NM_213599	exon11	c.C1031A	p.P344H	.	.	123	41	155	0	.	515
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74980004	74980004	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ARRB1	NM_004041	exon15	c.1023-1G>A	.	.	.	82	25	131	0	.	567
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197111554	197111554	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ASPM	NM_001206846	exon3	c.A1828G	p.K610E	.	.	93	27	92	0	.	615
ATAD5	79915	bcgsc.ca	37	17	29159404	29159404	+	Silent	SNP	G	G	C	rs999796	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATAD5	NM_024857	exon1	c.G39C	p.P13P	.	.	74	4	100	0	G|0.629;C|0.371	93
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160113232	160113232	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATP10B	NM_025153	exon6	c.C324T	p.P108P	.	.	145	40	154	0	.	72
ATXN1	6310	hgsc.bcm.edu	37	6	16327885	16327885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATXN1	NM_001128164	exon7	c.G657T	p.Q219H	.	.	109	12	80	0	.	93
ATXN1	6310	hgsc.bcm.edu;bcgsc.ca	37	6	16327891	16327891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ATXN1	NM_001128164	exon7	c.G651T	p.Q217H	.	.	99	12	78	0	.	93
B4GALNT2	124872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47246920	47246920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	B4GALNT2	NM_153446	exon11	c.G1531T	p.G511W	.	.	69	26	53	0	.	154
BHLHE23	128408	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	61637464	61637464	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	BHLHE23	NM_080606	exon1	c.C615T	p.D205D	.	.	23	9	20	0	.	90
BPIFC	254240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32829728	32829728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_174932	exon9	c.G956A	p.G319D	.	.	115	33	159	0	.	.
C15orf26	161502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81426689	81426689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	C15orf26	NM_173528	exon1	c.G19T	p.G7C	.	.	215	40	203	0	.	90
C7orf55-LUC7L2	100996928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	139026139	139026139	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_001244584	exon1	c.C9T	p.A3A	.	.	54	20	61	0	.	.
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	36960750	36960750	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.A620T	p.Q207L	.	.	65	5	105	0	.	90
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	36960792	36960792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CACNG2	NM_006078	exon4	c.T578C	p.V193A	.	.	80	7	123	0	.	90
CALCR	799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	93055779	93055779	+	Silent	SNP	G	G	A	rs145853724		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CALCR	NM_001164737	exon16	c.C1416T	p.I472I	.	.	93	6	128	0	G|1.000;A|0.000	664
CAMSAP2	23271	broad.mit.edu;ucsc.edu	37	1	200818517	200818517	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_203459	exon11	c.G2620T	p.E874X	.	.	164	35	129	2	.	.
CASZ1	54897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	10713785	10713785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CASZ1	NM_001079843	exon11	c.C2329T	p.P777S	.	.	56	14	86	0	.	113
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	74446154	74446154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD109	NM_133493	exon5	c.C556G	p.L186V	.	.	69	36	117	0	.	155
CD244	51744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160806007	160806007	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CD244	NM_001166663	exon6	c.T887C	p.I296T	.	.	97	46	105	0	.	91
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	73437280	73437280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CDH23	NM_001171931	exon15	c.C1582T	p.R528C	.	.	120	9	148	0	.	563
CEACAM3	1084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42300619	42300619	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEACAM3	NM_001815	exon1	c.C10A	p.P4T	.	.	73	18	97	0	.	91
CEP164	22897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117282631	117282631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CEP164	NM_014956	exon32	c.G4284T	p.R1428S	.	.	117	36	147	0	.	69
CEP170P1	645455	bcgsc.ca	37	4	119459039	119459039	+	RNA	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	.	.	.	461	84	622	1	.	.
CHRNA6	8973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42611206	42611206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CHRNA6	NM_004198	exon5	c.C1136A	p.A379D	.	.	124	42	116	0	.	90
CHRNA7	1139	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	32450652	32450652	+	Missense_Mutation	SNP	G	G	A	rs200236230		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CHRNA7	NM_001190455	exon7	c.G725A	p.C242Y	.	.	947	184	1045	2	.	91
CLCNKA	1187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	16351300	16351300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLCNKA	NM_004070	exon4	c.T272G	p.L91R	.	.	101	25	91	1	.	91
CLEC17A	388512	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14720955	14720955	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLEC17A	NM_001204118	exon14	c.C1084G	p.L362V	.	.	89	31	93	0	.	22
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	10147806	10147806	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CLEC1B	NM_016509	exon5	c.G478T	p.G160X	.	.	60	20	65	0	.	90
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238280705	238280705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	COL6A3	NM_004369	exon9	c.G3955T	p.V1319L	.	.	77	20	88	0	.	526
CRY1	1407	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107395609	107395609	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CRY1	NM_004075	exon4	c.A528G	p.E176E	.	.	94	33	102	2	.	93
CSPG5	10675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47618646	47618646	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CSPG5	NM_006574	exon2	c.A870G	p.G290G	.	.	63	15	65	0	.	91
CYFIP1	23191	broad.mit.edu	37	15	22958251	22958251	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CYFIP1	NM_014608	exon17	c.A1894G	p.M632V	.	.	94	3	93	1	.	99
CYP2A6	1548	bcgsc.ca	37	19	41355820	41355820	+	Silent	SNP	A	A	G	rs199702575		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CYP2A6	NM_000762	exon2	c.T246C	p.C82C	.	.	352	23	423	17	A|0.999;G|0.001	92
CYP2A6	1548	bcgsc.ca	37	19	41355828	41355828	+	Missense_Mutation	SNP	C	C	T	rs77233796		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	CYP2A6	NM_000762	exon2	c.G238A	p.V80M	.	.	344	24	421	18	.	92
CYTB	0	broad.mit.edu;bcgsc.ca	37	MT	15200	15200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	ENST00000361789	exon1	c.G454A	p.A152T	.	.	10	10	14	0	.	.
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	167962525	167962525	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCAF6	NM_001198956	exon7	c.750delT	p.N250fs	.	.	154	37	153	0	.	516
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155163818	155163818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DCHS2	NM_017639	exon22	c.T5683A	p.S1895T	.	.	89	34	100	0	.	94
DDX6	1656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118627983	118627983	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DDX6	NM_004397	exon10	c.A1007T	p.Q336L	.	.	90	17	119	1	.	659
DEGS1	8560	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	224371102	224371102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DEGS1	NM_003676	exon1	c.C64T	p.R22W	.	.	90	22	73	0	.	90
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52393979	52393979	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH1	NM_015512	exon27	c.G4455A	p.Q1485Q	.	.	176	69	203	0	.	67
DNAH9	1770	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11593045	11593045	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH9	NM_001372	exon20	c.G3906A	p.L1302L	.	.	140	57	204	1	.	168
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11597228	11597228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DNAH9	NM_001372	exon21	c.T4658G	p.L1553R	.	.	55	32	108	0	.	168
DOK3	79930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176936802	176936802	+	Splice_Site	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	DOK3	NM_024872	exon2	c.51+1G>A	.	.	.	125	30	158	0	.	226
EBNA1BP2	10969	bcgsc.ca	37	1	43632536	43632536	+	Missense_Mutation	SNP	C	C	T	rs7163	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EBNA1BP2	NM_001159936	exon8	c.G833A	p.R278H	.	.	93	5	77	0	C|0.804;T|0.196	90
EBNA1BP2	10969	hgsc.bcm.edu;bcgsc.ca	37	1	43630464	43630464	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EBNA1BP2	NM_001159936	exon9	c.A885G	p.K295K	.	.	83	4	98	0	.	90
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	184702094	184702094	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EDEM3	NM_025191	exon6	c.C489A	p.I163I	.	.	75	12	86	0	.	91
EHD1	10938	broad.mit.edu	37	11	64645818	64645818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EHD1	NM_006795	exon1	c.A119G	p.Y40C	.	.	222	6	230	0	.	90
ESCO2	157570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27645507	27645507	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ESCO2	NM_001017420	exon6	c.C1119G	p.D373E	.	.	60	11	68	0	.	90
EXOG	9941	bcgsc.ca	37	3	38565581	38565581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EXOG	NM_005107	exon6	c.G835T	p.V279L	.	.	53	4	70	0	.	90
EXOSC5	56915	broad.mit.edu;mdanderson.org	37	19	41892629	41892629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EXOSC5	NM_020158	exon6	c.T617C	p.L206P	.	.	37	6	35	0	.	90
EXTL1	2134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26355761	26355761	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	EXTL1	NM_004455	exon2	c.T857C	p.F286S	.	.	142	50	148	0	.	90
FAM122B	159090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133927919	133927919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM122B	NM_001170756	exon2	c.C103T	p.L35F	.	.	47	7	43	0	.	130
FAM160A1	729830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152571045	152571045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_001109977	exon11	c.C1852G	p.Q618E	.	.	101	15	147	0	.	.
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15326009	15326009	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM171A1	NM_001010924	exon2	c.T193C	p.S65P	.	.	97	35	143	0	.	138
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	34149907	34149907	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM47A	NM_203408	exon1	c.G489T	p.W163C	.	.	152	12	224	0	.	134
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	190195248	190195248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FAM5C	NM_199051	exon6	c.A925C	p.T309P	.	.	57	29	72	0	.	228
FANCD2	2177	bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FANCD2	NM_001018115	exon26	c.A2391G	p.V797V	.	.	92	8	90	0	A|0.909;G|0.091	229
FANCD2	2177	bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FANCD2	NM_001018115	exon26	c.G2406T	p.Q802H	.	.	111	6	116	0	G|0.990;T|0.010	229
FARP1	10160	broad.mit.edu	37	13	99098958	99098958	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FARP1	NM_005766	exon26	c.C2943T	p.Y981Y	.	.	117	3	143	0	.	290
FBXO30	84085	broad.mit.edu	37	6	146126547	146126547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FBXO30	NM_032145	exon2	c.C995T	p.A332V	.	.	75	4	96	1	.	291
FLNC	2318	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	128482322	128482322	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FLNC	NM_001127487	exon14	c.C2159T	p.P720L	.	.	144	10	166	1	.	141
FNBP1	23048	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	132691907	132691907	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_015033	exon7	c.T581C	p.L194P	.	.	201	49	211	0	.	.
FNBP4	23360	hgsc.bcm.edu	37	11	47772487	47772487	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FNBP4	NM_015308	exon6	c.C887A	p.A296D	.	.	80	4	89	0	.	91
FOCAD	54914	bcgsc.ca	37	9	20988426	20988426	+	Missense_Mutation	SNP	A	A	G	rs4977881	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_017794	exon43	c.A5002G	p.K1668E	.	.	77	5	117	0	A|0.237;G|0.763	.
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	37746731	37746731	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	FRMPD1	NM_014907	exon16	c.T4702G	p.L1568V	.	.	116	18	131	0	.	159
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	161324184	161324184	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	GABRA1,NS,NS,0	GABRA1	NM_001127643	exon11	c.C1127A	p.T376N	.	.	120	7	125	0	.	93
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173942670	173942670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GALNTL6	NM_001034845	exon12	c.C1532G	p.P511R	.	.	113	44	168	0	.	137
GCN1L1	10985	broad.mit.edu	37	12	120606097	120606097	+	Silent	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GCN1L1	NM_006836	exon16	c.A1527G	p.K509K	.	.	98	3	94	0	.	94
GIPR	2696	bcgsc.ca	37	19	46181001	46181008	+	Frame_Shift_Del	DEL	GTGGATTA	GTGGATTA	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	GTGGATTA	GTGGATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GIPR	NM_000164	exon10	c.888_895del	p.296_299del	.	.	82	3	142	0	.	523
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167571101	167571101	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR31	NM_005299	exon1	c.C219T	p.F73F	.	.	170	47	265	0	.	90
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41555817	41555817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPR34	NM_001097579	exon3	c.A931T	p.I311F	.	.	103	36	143	0	.	131
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101970175	101970185	+	Frame_Shift_Del	DEL	CCAGGCATGGG	CCAGGCATGGG	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CCAGGCATGGG	CCAGGCATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GPRASP2	NM_138437	exon4	c.378_388del	p.126_130del	.	.	125	29	146	0	.	131
GRM7	2917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	7494474	7494474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GRM7	NM_000844	exon6	c.T1355C	p.I452T	.	.	124	43	159	0	.	526
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49472819	49472819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GYS1	NM_002103	exon16	c.C1940T	p.S647L	.	.	31	12	41	0	.	524
GZMM	3004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	549779	549779	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	GZMM	NM_005317	exon5	c.C762G	p.G254G	.	.	45	18	72	0	.	90
HBS1L	10767	bcgsc.ca	37	6	135287533	135287533	+	Silent	SNP	A	A	G	rs13064	bycluster;byfrequency;by1000genomes	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HBS1L	NM_006620	exon17	c.T1977C	p.F659F	.	.	50	4	95	0	A|0.692;G|0.308	92
HECW2	57520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197189763	197189763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HECW2	NM_020760	exon6	c.G682T	p.G228W	.	.	228	77	266	1	.	668
HMCN1	83872	bcgsc.ca	37	1	186147773	186147773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HMCN1	NM_031935	exon104	c.A16169G	p.Q5390R	.	.	477	40	422	4	.	113
HNRNPH1	3187	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179047996	179047996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HNRNPH1	NM_001257293	exon4	c.G294T	p.K98N	.	.	250	61	254	1	.	22
HOXA6	3203	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27186959	27186959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HOXA6	NM_024014	exon1	c.A410T	p.Y137F	.	.	90	28	88	1	.	91
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14890638	14890638	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HSPA14	NM_016299	exon4	c.C252T	p.I84I	.	.	45	12	76	0	.	291
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3237426	3237426	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	HTT	NM_002111	exon63	c.G8706T	p.L2902L	.	.	56	27	97	0	.	281
IDH3G	3421	ucsc.edu;bcgsc.ca	37	X	153055666	153055666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IDH3G	NM_004135	exon4	c.G217T	p.V73F	.	.	342	146	273	5	.	90
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	160494391	160494391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IGF2R	NM_000876	exon34	c.G4837A	p.V1613M	.	.	164	7	233	0	.	118
IGSF3	3321	bcgsc.ca	37	1	117150600	117150600	+	Missense_Mutation	SNP	G	G	A	rs141947907		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IGSF3	NM_001542	exon5	c.C1186T	p.R396C	.	.	227	20	288	7	G|1.000;A|0.000	92
IRAK1	3654	broad.mit.edu	37	X	153278700	153278700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	IRAK1	NM_001569	exon12	c.C1724A	p.A575E	.	.	75	6	81	2	.	1074
JMY	133746	broad.mit.edu;bcgsc.ca	37	5	78533507	78533522	+	Splice_Site	DEL	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGAGTGAGTGAGCTCC	TGAGTGAGTGAGCTCC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	JMY	.	.	.	.	.	.	109	8	149	0	.	227
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	111147065	111147065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KCNA2	NM_001204269	exon3	c.C340T	p.R114W	.	.	46	15	76	0	.	91
KCNIP1	30820	bcgsc.ca	37	5	170145856	170145856	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KCNIP1	NM_001034837	exon3	c.189delG	p.E63fs	.	.	80	25	91	1	.	92
KIAA1217	56243	broad.mit.edu	37	10	24832874	24832874	+	Nonsense_Mutation	SNP	G	G	T	rs137864034	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIAA1217	NM_019590	exon19	c.G4675T	p.E1559X	.	.	46	16	49	1	G|1.000;A|0.000	98
KIAA1429	25962	hgsc.bcm.edu	37	8	95523460	95523460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIAA1429	NM_015496	exon13	c.C3343A	p.L1115I	.	.	80	4	129	0	.	92
KIAA2018	205717	ucsc.edu	37	3	113376119	113376119	+	Silent	SNP	C	C	T	rs62265538		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIAA2018	NM_001009899	exon7	c.G4410A	p.Q1470Q	.	.	90	13	118	0	C|0.500;T|0.500	93
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	168443256	168443256	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KIF25	NM_030615	exon8	c.C845G	p.T282S	.	.	56	31	105	0	.	92
KLHL15	80311	ucsc.edu;bcgsc.ca	37	X	24006091	24006091	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KLHL15	NM_030624	exon4	c.T1762G	p.C588G	.	.	537	176	529	2	.	131
KLK11	11012	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51528911	51528911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KLK11	NM_144947	exon2	c.G73T	p.A25S	.	.	91	26	108	1	.	650
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52760929	52760929	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	KRT85	NM_002283	exon1	c.G261A	p.V87V	.	.	351	69	378	0	.	91
KRTAP1-1	81851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39197352	39197352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_030967	exon1	c.G298A	p.G100S	.	.	154	39	172	0	.	.
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	72	14	72	8	.	.
KRTAP4-9	100132386	broad.mit.edu	37	17	39262086	39262086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_001146041	exon1	c.G446T	p.C149F	.	.	98	4	109	1	.	.
LILRA4	23547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54850148	54850148	+	Missense_Mutation	SNP	C	C	A	rs181991337	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LILRA4	NM_012276	exon2	c.G59T	p.R20L	.	.	108	31	135	0	C|0.999;T|0.000	91
LMBRD2	92255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36124328	36124328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMBRD2	NM_001007527	exon7	c.C787A	p.P263T	.	.	174	41	246	0	.	90
LMTK2	22853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	97821009	97821009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LMTK2	NM_014916	exon11	c.G1232A	p.R411Q	.	.	86	23	127	0	.	1381
LOC642236	0	bcgsc.ca	37	9	68433511	68433511	+	RNA	SNP	C	C	T	rs202018667		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	.	.	.	267	14	334	13	.	.
LOC642236	0	bcgsc.ca	37	9	68433548	68433548	+	RNA	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	.	.	.	270	20	382	17	.	.
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450892	85450892	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRRIQ1	NM_001079910	exon8	c.C2321A	p.P774Q	.	.	40	11	88	0	.	95
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	102108549	102108549	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	LRWD1	NM_152892	exon6	c.T719G	p.L240R	.	.	86	21	111	0	.	69
MAGI2	9863	hgsc.bcm.edu	37	7	77975281	77975281	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MAGI2	NM_012301	exon8	c.A1183T	p.T395S	.	.	83	4	106	0	.	461
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138728988	138728988	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MCF2	NM_001171876	exon3	c.G100T	p.V34L	.	.	596	107	551	0	.	227
MECP2	4204	hgsc.bcm.edu	37	X	153296110	153296110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MECP2	NM_001110792	exon3	c.C1205T	p.P402L	.	.	10	4	7	0	.	226
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu	37	19	42858165	42858165	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MEGF8	NM_001271938	exon22	c.4000delA	p.T1334fs	.	.	59	10	45	0	.	23
MIR372	442917	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54291196	54291196	+	RNA	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	.	.	.	57	21	57	0	.	.
MLL	4297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118362558	118362558	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MLL	NM_001197104	exon15	c.4919delA	p.E1640fs	.	.	76	12	101	0	.	1255
MSX1	4487	bcgsc.ca	37	4	4864431	4864431	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MSX1	NM_002448	exon2	c.G473T	p.R158L	.	.	38	21	76	2	.	90
MTO1	25821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74183325	74183325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MTO1	NM_133645	exon4	c.C773T	p.P258L	.	.	96	8	157	0	.	96
MUC21	394263	bcgsc.ca	37	6	30954669	30954669	+	Silent	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MUC21	NM_001010909	exon2	c.A717T	p.T239T	.	.	416	27	192	1	.	92
MUC2	4583	broad.mit.edu	37	11	1093299	1093299	+	Silent	SNP	G	G	A	rs113492997	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MUC2	NM_002457	exon30	c.G5118A	p.T1706T	.	.	102	3	112	1	.	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3238423	3238423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MXRA5	NM_015419	exon5	c.C5303G	p.S1768C	.	.	112	33	154	0	.	136
MXRA5	25878	ucsc.edu;bcgsc.ca	37	X	3261758	3261758	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MXRA5	NM_015419	exon2	c.C117A	p.V39V	.	.	702	249	725	3	.	136
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108133086	108133086	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	MYH15	NM_014981	exon31	c.G4198C	p.D1400H	.	.	142	27	130	0	.	73
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	33345295	33345295	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NCOA6	NM_014071	exon7	c.A1256T	p.Q419L	.	.	105	22	128	0	.	292
NCOR2	9612	mdanderson.org	37	12	124887093	124887093	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NCOR2	NM_006312	exon16	c.G1497A	p.Q499Q	.	.	28	4	31	0	.	229
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152528994	152528994	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NEB	NM_004543	exon37	c.C4188A	p.A1396A	.	.	210	91	344	0	.	145
NES	10763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156641173	156641173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NES	NM_006617	exon4	c.A2807T	p.E936V	.	.	113	6	73	0	.	520
NLRP13	126204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56416366	56416366	+	Missense_Mutation	SNP	C	C	A	rs201367180	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP13	NM_176810	exon8	c.G2560T	p.G854C	.	.	154	38	187	0	C|0.999;T|0.001	211
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56241199	56241199	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NLRP9	NM_176820	exon3	c.C1992T	p.L664L	.	.	69	19	88	0	.	294
NOD2	64127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	50750836	50750836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NOD2	NM_022162	exon6	c.C2581T	p.H861Y	.	.	146	43	182	0	.	231
NWD1	284434	broad.mit.edu	37	19	16908560	16908560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NWD1	NM_001007525	exon16	c.C3322T	p.R1108W	.	.	157	5	153	0	.	7
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16918939	16918939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NWD1	NM_001007525	exon18	c.A4279G	p.S1427G	.	.	94	29	103	0	.	7
NXF5	55998	broad.mit.edu;bcgsc.ca	37	X	101095492	101095492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	NXF5	NM_032946	exon10	c.C677T	p.S226L	.	.	869	23	823	1	.	204
OAS2	4939	ucsc.edu	37	12	113444350	113444350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OAS2	NM_002535	exon8	c.C1601T	p.S534F	.	.	112	2	110	0	.	91
OBSCN	84033	bcgsc.ca	37	1	228456291	228456291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OBSCN	NM_001271223	exon19	c.G5474A	p.G1825E	.	.	427	11	365	4	.	403
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576234	158576234	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR10Z1	NM_001004478	exon1	c.G6T	p.G2G	.	.	72	39	93	0	.	70
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143826880	143826880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR2A14	NM_001001659	exon1	c.G675T	p.L225F	.	.	175	19	166	0	.	90
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5510297	5510297	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OR52D1	NM_001005163	exon1	c.A361T	p.M121L	.	.	174	49	181	0	.	68
OSCAR	126014	hgsc.bcm.edu;bcgsc.ca	37	19	54598520	54598530	+	Frame_Shift_Del	DEL	CTGCGCCAGTC	CTGCGCCAGTC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CTGCGCCAGTC	CTGCGCCAGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	OSCAR	NM_130771	exon6	c.760_770del	p.254_257del	.	.	247	34	344	0	.	68
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950193	118950193	+	Silent	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PAPPA	NM_002581	exon2	c.C1176G	p.S392S	.	.	150	43	130	0	.	77
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140857854	140857854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PCDHGC3	NM_032402	exon1	c.G2171C	p.R724T	.	.	68	7	68	0	.	24
PGM3	5238	bcgsc.ca	37	6	83880167	83880167	+	Missense_Mutation	SNP	C	C	A	rs473267	byfrequency;alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PGM3	NM_001199917	exon13	c.G1480T	p.D494Y	.	.	101	31	152	3	C|0.638;N|0.000	90
PGM3	5238	ucsc.edu;bcgsc.ca	37	6	83880166	83880166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PGM3	NM_001199917	exon13	c.A1481T	p.D494V	.	.	102	32	155	3	.	90
PHF8	23133	ucsc.edu;bcgsc.ca	37	X	54011484	54011484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PHF8	NM_001184896	exon18	c.C2414T	p.P805L	.	.	139	45	162	2	.	133
PI4KA	5297	broad.mit.edu;bcgsc.ca	37	22	21150602	21150602	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PI4KA	NM_058004	exon18	c.G2109A	p.R703R	.	.	163	6	155	0	.	454
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178928226	178928226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	PIK3CA,NS,carcinoma,+1	PIK3CA	NM_006218	exon9	c.C1412T	p.P471L	.	.	99	4	114	0	.	27752
PIK3CG	5294	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	7	106508977	106508977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PIK3CG	NM_002649	exon2	c.C971T	p.P324L	.	.	156	44	167	0	.	1316
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110539193	110539193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PKHD1L1	NM_177531	exon77	c.G12665T	p.R4222I	.	.	109	14	132	0	.	145
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	128816239	128816239	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PLK4	NM_014264	exon14	c.G2694T	p.W898C	.	.	37	13	79	0	.	333
PODNL1	79883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	14043535	14043538	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	TGTT	TGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PODNL1	NM_024825	exon8	c.1519_1522del	p.507_508del	.	.	127	25	132	0	.	90
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103909723	103909723	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PPRC1	NM_015062	exon14	c.C4932T	p.S1644S	.	.	68	26	146	0	.	227
PRF1	5551	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72357968	72357968	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PRF1	NM_001083116	exon3	c.T1509C	p.S503S	.	.	80	43	143	1	.	578
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43523032	43523032	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_002785	exon3	c.G599T	p.R200M	.	.	161	49	172	0	.	.
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	23411941	23411941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	PTCHD1	NM_173495	exon3	c.C2306T	p.A769V	.	.	107	11	126	0	.	135
RAPGEF2	9693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	160253698	160253698	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RAPGEF2	NM_014247	exon11	c.T1501C	p.S501P	.	.	169	43	231	0	.	637
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	103179712	103179712	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RELN	NM_173054	exon45	c.T6993C	p.D2331D	.	.	120	41	119	0	.	574
RNF130	55819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179393926	179393926	+	Missense_Mutation	SNP	C	C	T	rs138960112	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RNF130	NM_018434	exon7	c.G1030A	p.G344S	.	.	191	69	220	0	C|0.999;T|0.001	227
RNF213	57674	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78319696	78319696	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RNF213	NM_001256071	exon29	c.A7561G	p.I2521V	.	.	147	40	192	1	.	577
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117638330	117638330	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ROS1	NM_002944	exon38	c.T6111C	p.Y2037Y	.	.	126	6	214	0	.	1353
RXFP3	51289	broad.mit.edu	37	5	33937074	33937074	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RXFP3	NM_016568	exon1	c.G229C	p.E77Q	.	.	57	3	61	0	.	91
RYR1	6261	hgsc.bcm.edu	37	19	38986916	38986965	+	Frame_Shift_Del	DEL	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	-	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	CACGAGACGGTCATGGAGGTCATGGTCAACGTCCTCGGGGGCGGCGAGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	RYR1	NM_001042723	exon40	c.6610_6659del	p.2204_2220del	.	.	91	6	88	0	.	100
SAA1	6288	ucsc.edu	37	11	18290866	18290866	+	Silent	SNP	T	T	C	rs71469385	bycluster	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SAA1	NM_199161	exon3	c.T216C	p.A72A	.	.	126	34	138	20	C|1.000;|0.000	650
SAFB2	9667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	5621381	5621381	+	Silent	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SAFB2	NM_014649	exon2	c.T213C	p.P71P	.	.	95	5	113	0	.	90
SALL2	6297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21992350	21992350	+	Silent	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SALL2	NM_005407	exon2	c.A1512T	p.G504G	.	.	63	21	66	0	.	92
SDK2	54549	broad.mit.edu	37	17	71468282	71468282	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SDK2	NM_001144952	exon3	c.G300A	p.L100L	.	.	88	24	76	2	.	24
SDPR	8436	hgsc.bcm.edu;broad.mit.edu	37	2	192700908	192700908	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SDPR	NM_004657	exon2	c.C1019A	p.A340E	.	.	84	4	120	0	.	92
SEC16A	9919	broad.mit.edu;bcgsc.ca	37	9	139370032	139370032	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_014866	exon3	c.T2036G	p.L679R	.	.	169	6	180	0	.	.
SHROOM2	357	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	9841727	9841727	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SHROOM2	NM_001649	exon2	c.G201A	p.K67K	.	.	194	56	262	2	.	198
SIDT2	51092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117056884	117056884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SIDT2	NM_001040455	exon9	c.A907G	p.I303V	.	.	146	45	172	1	.	90
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230914503	230914503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC16A14	NM_152527	exon3	c.T377G	p.L126R	.	.	248	43	252	0	.	96
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86905113	86905113	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC28A3	NM_001199633	exon11	c.T1105C	p.S369P	.	.	125	25	152	0	.	94
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	25671316	25671316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC34A2	NM_006424	exon7	c.T683A	p.V228E	.	.	171	57	186	0	.	95
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92918881	92918881	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLC36A4	NM_152313	exon2	c.A155G	p.Q52R	.	.	66	15	90	0	.	93
SLIT3	6586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	168233531	168233531	+	Silent	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SLIT3	NM_001271946	exon9	c.G855T	p.T285T	.	.	214	50	248	0	.	95
SMEK1	55671	broad.mit.edu;ucsc.edu	37	14	91927921	91927921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SMEK1	NM_032560	exon15	c.T2156A	p.L719Q	.	.	88	16	144	2	.	226
SNAI1	6615	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	48600475	48600475	+	Missense_Mutation	SNP	C	C	G	rs34261470	byfrequency;alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SNAI1	NM_005985	exon2	c.C197G	p.A66G	.	.	31	8	21	0	C|0.979;T|0.021	227
SORBS2	8470	hgsc.bcm.edu;bcgsc.ca	37	4	186544299	186544299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SORBS2	NM_001270771	exon16	c.C2572A	p.H858N	.	.	55	4	68	0	.	91
SOS2	6655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50655388	50655388	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SOS2	NM_006939	exon5	c.A541T	p.I181L	.	.	57	13	71	0	.	849
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215274960	215274960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SPAG16	NM_024532	exon16	c.C1817A	p.A606E	.	.	186	47	216	0	.	188
SPTB	6710	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65260468	65260468	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	SPTB	NM_001024858	exon13	c.G1913C	p.R638P	.	.	81	28	101	1	.	100
STRA6	64220	broad.mit.edu	37	15	74494562	74494562	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	STRA6	NM_001199042	exon2	c.A164G	p.E55G	.	.	61	3	86	0	.	90
SUZ12P1	440423	broad.mit.edu;ucsc.edu	37	17	29096768	29096768	+	RNA	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	.	.	.	32	6	47	0	.	.
TAS2R16	50833	broad.mit.edu;bcgsc.ca	37	7	122635089	122635089	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TAS2R16	NM_016945	exon1	c.G600T	p.M200I	.	.	217	15	204	1	.	92
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143175239	143175239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TAS2R41	NM_176883	exon1	c.C274G	p.L92V	.	.	126	19	138	0	.	92
TMCO1	54499	broad.mit.edu;bcgsc.ca	37	1	165738099	165738099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMCO1	NM_001256164	exon1	c.G43A	p.G15S	.	.	63	17	47	1	.	68
TMEM132C	92293	broad.mit.edu	37	12	129189941	129189941	+	Missense_Mutation	SNP	G	G	A	rs12424159	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM132C	NM_001136103	exon9	c.G2428A	p.G810R	.	.	70	3	68	0	G|0.517;A|0.483	68
TMEM145	284339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42827878	42827878	+	Silent	SNP	G	G	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM145	NM_173633	exon14	c.G1338C	p.T446T	.	.	194	30	206	0	.	90
TMEM5	10329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64174920	64174920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM5	NM_014254	exon2	c.T291A	p.D97E	.	.	55	13	107	0	.	90
TMEM71	137835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133734358	133734358	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM71	NM_144649	exon7	c.C623A	p.T208N	.	.	218	41	301	1	.	92
TMEM71	137835	ucsc.edu;bcgsc.ca	37	8	133734357	133734357	+	Silent	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMEM71	NM_144649	exon7	c.C624A	p.T208T	.	.	223	42	304	2	.	92
TMPRSS11D	9407	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	68725292	68725292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TMPRSS11D	NM_004262	exon2	c.T113A	p.V38D	.	.	206	18	266	1	.	91
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	93558624	93558624	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TNKS2	NM_025235	exon1	c.C177T	p.S59S	.	.	62	28	69	0	.	541
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175299224	175299224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TNR	NM_003285	exon21	c.A3779G	p.Y1260C	.	.	106	27	91	0	.	324
TRIM37	4591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	57093047	57093047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRIM37	NM_015294	exon21	c.G2500T	p.D834Y	.	.	185	65	203	2	.	660
TRIM74	378108	broad.mit.edu	37	7	75028355	75028355	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRIM74	NM_198853	exon2	c.C138T	p.H46H	.	.	353	64	381	0	.	40
TRIM9	114088	bcgsc.ca	37	14	51446216	51446216	+	Missense_Mutation	SNP	T	T	G	rs2275462	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRIM9	NM_015163	exon9	c.A1959C	p.L653F	.	.	77	5	108	0	T|0.451;G|0.549	227
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72975703	72975703	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRPA1	NM_007332	exon5	c.G656A	p.R219K	.	.	46	15	75	0	.	230
TRPM6	140803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77354337	77354337	+	Missense_Mutation	SNP	T	T	A	rs201318772	alternate_allele	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TRPM6	NM_017662	exon35	c.A5516T	p.K1839I	.	.	198	20	259	1	T|0.999;C|0.001	335
TTC13	79573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231060591	231060591	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	TTC13	NM_024525	exon14	c.A1717G	p.R573G	.	.	136	26	120	0	.	92
UBE2O	63893	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74387423	74387423	+	Silent	SNP	G	G	A	rs151029911	byfrequency	TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UBE2O	NM_022066	exon18	c.C3480T	p.N1160N	.	.	54	17	59	0	G|0.994;A|0.006	272
UBXN10	127733	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	20517817	20517817	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UBXN10	NM_152376	exon2	c.A763C	p.T255P	.	.	63	17	123	1	.	91
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141484571	141484571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	UCP1	NM_021833	exon3	c.G427A	p.A143T	.	.	118	24	134	0	.	91
VGLL2	245806	broad.mit.edu	37	6	117589552	117589552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	VGLL2	NM_182645	exon2	c.T289C	p.S97P	.	.	69	5	145	1	.	90
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158851225	158851225	+	Silent	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	VIPR2	NM_003382	exon5	c.C402T	p.Y134Y	.	.	54	15	80	0	.	91
WDR59	79726	broad.mit.edu	37	16	74949768	74949768	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	WDR59	NM_030581	exon13	c.G1224A	p.E408E	.	.	89	3	111	0	.	92
ZMAT4	79698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	40554844	40554844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZMAT4	NM_024645	exon4	c.C269T	p.A90V	.	.	122	34	122	0	.	92
ZNF250	58500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	146107239	146107239	+	Silent	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_021061	exon6	c.G1344A	p.E448E	.	.	168	54	196	0	.	.
ZNF286A	57335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15619991	15619991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF286A	NM_020652	exon6	c.G953T	p.R318I	.	.	146	59	283	0	.	90
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88500768	88500768	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	NM_001127464	exon2	c.C6806T	p.A2269V	.	.	88	10	91	0	.	.
ZNF536	9745	broad.mit.edu	37	19	30936127	30936127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	ZNF536	NM_014717	exon2	c.C1658T	p.A553V	.	.	120	3	156	0	.	144
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25924784	25924785	+	Missense_Mutation	DNP	CA	CA	AC	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	p.V1402F	.	.	.	.	.	.	.	
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36983573	36983574	+	Missense_Mutation	DNP	CT	CT	AA	novel		TCGA-HP-A5N0-01A-11D-A28X-10	TCGA-HP-A5N0-10A-01D-A28X-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed152c64-923a-45a2-a5e1-d8a649063561	06f66113-568b-43cd-a4f5-a6b4356cd508	.	.	.	.	.	p.K78I	.	.	.	.	.	.	.	
