Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A1BG	1	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58863684	58863684	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	A1BG	NM_130786	exon4	c.C578T	p.S193F	.	.	100	12	68	0	.	90
ACSL3	2181	broad.mit.edu;ucsc.edu	37	2	223791787	223791787	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ACSL3	NM_203372	exon11	c.T1345G	p.L449V	.	.	117	4	60	0	.	228
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	379	18	256	10	.	227
AGAP1	116987	bcgsc.ca	37	2	236617869	236617869	+	Silent	SNP	G	G	A	rs8178995	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	AGAP1	NM_014914	exon2	c.G210A	p.P70P	.	.	146	5	108	0	G|0.929;A|0.071	93
ALG1L2	644974	hgsc.bcm.edu	37	3	129810132	129810132	+	Missense_Mutation	SNP	T	T	C	rs200245267		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001136152	exon2	c.T49C	p.S17P	.	.	15	12	2	0	T|0.998;C|0.002	.
ANKRD30A	91074	broad.mit.edu	37	10	37506628	37506628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ANKRD30A	NM_052997	exon33	c.C2921T	p.T974I	.	.	63	4	53	0	.	161
ANKRD30BL	554226	broad.mit.edu	37	2	132919099	132919099	+	RNA	SNP	C	C	T	rs199974298		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	170	12	120	1	C|0.991;T|0.009	.
ANKRD35	148741	ucsc.edu;bcgsc.ca	37	1	145562881	145562881	+	Silent	SNP	T	T	C	rs10910824	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ANKRD35	NM_144698	exon10	c.T2569C	p.L857L	.	.	45	4	32	0	T|0.474;C|0.526	95
ANO4	121601	broad.mit.edu	37	12	101520845	101520845	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ANO4	NM_178826	exon26	c.G2760A	p.P920P	.	.	170	8	147	1	.	96
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183898651	183898651	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	AP2M1	NM_001025205	exon5	c.G438T	p.Q146H	.	.	231	19	197	0	.	90
ATAD3B	83858	bcgsc.ca	37	1	1421531	1421531	+	Silent	SNP	C	C	A	rs819976	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATAD3B	NM_031921	exon10	c.C1005A	p.T335T	.	.	331	9	230	2	C|0.587;A|0.413	44
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	138878508	138878508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP11C	NM_001010986	exon12	c.A1139T	p.D380V	.	.	143	26	151	0	.	198
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42486221	42486221	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ATP1A3	NM_001256214	exon9	c.A1070T	p.K357M	.	.	294	19	213	0	.	92
BMP1	649	bcgsc.ca	37	8	22067070	22067070	+	Silent	SNP	C	C	T	rs4076619	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	BMP1	NM_006129	exon19	c.C2688T	p.A896A	.	.	314	9	222	1	A|0.000;C|0.871;G|0.000;T|0.129	155
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	93749020	93749020	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	BTAF1	NM_003972	exon20	c.A2537G	p.N846S	.	.	112	9	73	0	.	92
C10orf71	118461	broad.mit.edu	37	10	50532047	50532047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	C10orf71	NM_001135196	exon3	c.G1457A	p.C486Y	.	.	142	5	115	0	.	90
C8orf74	203076	broad.mit.edu;bcgsc.ca	37	8	10530197	10530197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001040032	exon1	c.G22A	p.G8R	.	.	151	11	98	2	.	.
CASP6	839	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	110615726	110615726	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CASP6	NM_001226	exon5	c.C438G	p.D146E	.	.	271	16	216	0	.	660
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CCDC102A	NM_033212	exon2	c.C286T	p.R96W	.	.	4	4	0	0	G|0.001;A|0.999	91
CCNH	902	broad.mit.edu	37	5	86705132	86705132	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CCNH	NM_001239	exon3	c.A289G	p.M97V	.	.	69	4	45	0	.	441
CDC42BPA	8476	broad.mit.edu	37	1	227204739	227204739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CDC42BPA	NM_003607	exon32	c.T4523A	p.L1508Q	.	.	123	4	116	0	.	549
CDK12	51755	bcgsc.ca	37	17	37682292	37682292	+	Silent	SNP	G	G	A	rs12950784	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CDK12	NM_016507	exon13	c.G3483A	p.T1161T	.	.	269	7	170	2	G|0.933;A|0.067	1055
CEACAM16	388551	broad.mit.edu	37	19	45208989	45208989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CEACAM16	NM_001039213	exon5	c.G791A	p.W264X	.	.	304	9	248	0	.	23
CHN2	1124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29407578	29407578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CHN2	NM_004067	exon3	c.C119T	p.P40L	.	.	59	6	35	0	.	229
CNOT6	57472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179956354	179956354	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNOT6	NM_015455	exon2	c.A78G	p.G26G	.	.	316	25	252	0	.	90
CNST	163882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	246811218	246811218	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CNST	NM_152609	exon9	c.A1715G	p.D572G	.	.	156	9	117	0	.	90
CORIN	10699	hgsc.bcm.edu;broad.mit.edu	37	4	47663761	47663761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CORIN	NM_006587	exon12	c.C1702A	p.Q568K	.	.	108	6	64	0	.	91
CPO	130749	bcgsc.ca	37	2	207824384	207824384	+	Missense_Mutation	SNP	T	T	G	rs11903403	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CPO	NM_173077	exon5	c.T402G	p.S134R	.	.	172	7	149	0	T|0.526;G|0.474	154
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	3072177	3072177	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSMD1	NM_033225	exon30	c.T4709C	p.I1570T	.	.	144	9	118	0	.	86
CSRNP1	64651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	39184867	39184867	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CSRNP1	NM_033027	exon5	c.G1449C	p.V483V	.	.	130	9	111	0	.	230
CST1	1469	bcgsc.ca	37	20	23731426	23731426	+	Silent	SNP	C	C	T	rs13045477	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CST1	NM_001898	exon1	c.G78A	p.E26E	.	.	160	6	151	0	C|0.665;T|0.335	91
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37988645	37988645	+	Silent	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CTDSPL	NM_001008392	exon2	c.A177C	p.P59P	.	.	71	5	50	0	.	90
CTSD	1509	broad.mit.edu;bcgsc.ca	37	11	1782666	1782666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CTSD	NM_001909	exon2	c.G101T	p.R34L	.	.	218	7	153	0	.	90
CXorf36	79742	bcgsc.ca	37	X	45011018	45011018	+	Missense_Mutation	SNP	C	C	A	rs143817529		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CXorf36	NM_176819	exon5	c.G1181T	p.R394L	.	.	92	5	83	0	C|0.970;A|0.030	130
CYP3A5	1577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99273802	99273802	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	CYP3A5	NM_001190484	exon2	c.A101G	p.K34R	.	.	273	28	169	0	.	90
DCAF12L2	340578	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	125298989	125298989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	DCAF12L2	NM_001013628	exon1	c.C919T	p.R307X	.	.	174	26	133	1	.	113
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	31552686	31552686	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	DENND5B	NM_144973	exon16	c.G2970T	p.L990L	.	.	205	11	144	0	.	24
DZANK1	55184	broad.mit.edu;bcgsc.ca	37	20	18393361	18393381	+	In_Frame_Del	DEL	GCTAGTTCCTGTTCCTTTTTT	GCTAGTTCCTGTTCCTTTTTT	-	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	GCTAGTTCCTGTTCCTTTTTT	GCTAGTTCCTGTTCCTTTTTT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001099407	exon13	c.1341_1361del	p.447_454del	.	.	178	7	131	0	.	.
EIF3B	8662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2406209	2406209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EIF3B	NM_001037283	exon8	c.A1339C	p.S447R	.	.	172	17	131	0	.	68
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	40216999	40216999	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ENTHD1	NM_152512	exon5	c.A831G	p.A277A	.	.	76	7	49	0	.	93
EPM2A	7957	hgsc.bcm.edu;broad.mit.edu	37	6	145948714	145948714	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	EPM2A	NM_005670	exon4	c.C834T	p.C278C	.	.	74	4	82	0	.	415
ERP27	121506	bcgsc.ca	37	12	15090927	15090927	+	Missense_Mutation	SNP	A	A	G	rs35030722	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ERP27	NM_152321	exon2	c.T154C	p.F52L	.	.	127	7	76	0	A|0.987;G|0.013	153
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	58	4	41	0	.	.
FAM188B	84182	bcgsc.ca	37	7	30831082	30831082	+	Missense_Mutation	SNP	C	C	T	rs12701034	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FAM188B	NM_032222	exon5	c.C965T	p.T322M	.	.	273	7	211	2	C|0.515;T|0.485	90
FAM205B	389715	broad.mit.edu	37	9	34835532	34835532	+	RNA	SNP	A	A	G	rs2988118	by2hit2allele	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	49	7	38	1	A|1.000;|0.000	.
FAM5C	339479	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	190068069	190068069	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FAM5C	NM_199051	exon8	c.C1380T	p.C460C	.	.	139	9	117	1	.	228
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001145402	exon9	c.A2337C	p.P779P	.	.	66	8	51	0	.	.
FGR	2268	broad.mit.edu	37	1	27943782	27943782	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FGR	NM_001042729	exon6	c.A454T	p.K152X	.	.	63	4	43	0	.	547
FGR	2268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27949607	27949607	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FGR	NM_001042729	exon4	c.C275A	p.T92N	.	.	320	17	221	1	.	547
FLT4	2324	broad.mit.edu	37	5	180048894	180048894	+	Silent	SNP	G	G	A	rs143634822		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	FLT4	NM_182925	exon13	c.C1668T	p.D556D	.	.	194	14	132	0	G|1.000;A|0.000	1490
GANAB	23193	hgsc.bcm.edu	37	11	62400540	62400540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GANAB	NM_198335	exon9	c.C818A	p.P273Q	.	.	84	4	71	0	.	94
GNAS	2778	hgsc.bcm.edu;broad.mit.edu	37	20	57415270	57415270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GNAS	NM_016592	exon1	c.T109C	p.C37R	.	.	70	4	53	0	.	4767
GPATCH2L	55668	broad.mit.edu	37	14	76644346	76644346	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_017926	exon7	c.G1068A	p.L356L	.	.	47	4	37	0	.	.
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	107115727	107115727	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GPR22	NM_005295	exon3	c.C1222A	p.P408T	.	.	121	7	81	0	.	92
GPX1	2876	broad.mit.edu	37	3	49395482	49395482	+	Missense_Mutation	SNP	G	G	C	rs75404373	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	GPX1	.	.	.	.	.	.	112	12	56	1	G|0.333;C|0.667	68
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	50444279	50444279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IKZF1	NM_006060	exon4	c.C209A	p.A70D	.	.	122	12	89	0	.	1242
IL6	3569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	22767126	22767126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IL6	NM_000600	exon2	c.C83T	p.A28V	.	.	104	7	71	0	.	514
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	75893275	75893275	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IQGAP2	NM_006633	exon10	c.G919T	p.V307L	.	.	184	13	168	0	.	96
IRGM	345611	bcgsc.ca	37	5	150227998	150227998	+	Silent	SNP	C	C	T	rs10065172	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001145805	exon2	c.C313T	p.L105L	.	.	216	6	163	1	C|0.714;T|0.286	.
IWS1	55677	hgsc.bcm.edu;broad.mit.edu	37	2	128247456	128247457	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	IWS1	NM_017969	exon11	c.2111_2112insA	p.R704fs	.	.	159	11	126	0	.	91
KCNH6	81033	hgsc.bcm.edu;bcgsc.ca	37	17	61613103	61613103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KCNH6	NM_030779	exon6	c.G1175A	p.R392H	.	.	165	10	131	0	.	91
KDM5D	8284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	Y	21901515	21901515	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KDM5D	NM_001146705	exon6	c.A556G	p.K186E	.	.	109	5	91	0	.	560
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37447618	37447618	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001144990	exon7	c.A4008T	p.G1336G	.	.	116	6	73	0	.	.
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39448160	39448160	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KLB	NM_175737	exon4	c.C1814T	p.S605L	.	.	136	9	93	0	.	69
KRT73	319101	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53004991	53004991	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KRT73	NM_175068	exon6	c.G1107T	p.K369N	.	.	163	13	127	1	.	157
KRTAP5-2	440021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1619335	1619335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	KRTAP5-2	NM_001004325	exon1	c.G146A	p.C49Y	.	.	189	17	136	0	.	44
LAMA3	3909	bcgsc.ca	37	18	21406678	21406678	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LAMA3	NM_001127717	exon22	c.C2584T	p.L862L	.	.	76	4	58	0	.	100
LBX1	10660	broad.mit.edu;mdanderson.org	37	10	102988554	102988554	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LBX1	NM_006562	exon1	c.G19T	p.G7C	.	.	49	5	30	0	.	90
LRRC37A	9884	broad.mit.edu	37	17	44409918	44409918	+	Missense_Mutation	SNP	C	C	T	rs3196690		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LRRC37A	NM_014834	exon10	c.C4705T	p.L1569F	.	.	247	6	171	1	.	22
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	43968547	43968547	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	LYPD3	NM_014400	exon2	c.C141T	p.N47N	.	.	111	12	95	0	.	91
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20201371	20201371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MACC1	NM_182762	exon4	c.G115A	p.E39K	.	.	60	7	36	0	.	93
MAML2	84441	bcgsc.ca	37	11	95825386	95825386	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MAML2	NM_032427	exon2	c.G1809A	p.Q603Q	.	.	178	8	148	1	.	850
MAMLD1	10046	broad.mit.edu	37	X	149638771	149638771	+	Missense_Mutation	SNP	C	C	T	rs146141590	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MAMLD1	NM_005491	exon3	c.C926T	p.A309V	.	.	107	6	73	1	C|0.999;T|0.001	130
MIOX	55586	bcgsc.ca	37	22	50928005	50928005	+	Silent	SNP	G	G	A	rs2232884	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MIOX	NM_017584	exon9	c.G681A	p.T227T	.	.	113	5	98	1	G|0.926;A|0.074	90
MIR662	724032	bcgsc.ca	37	16	820249	820249	+	RNA	SNP	G	G	A	rs9745376	bycluster;byfrequency;by1000genomes	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	73	5	65	0	G|0.934;A|0.066	.
MRPL23	6150	bcgsc.ca	37	11	1972143	1972143	+	Missense_Mutation	SNP	G	G	A	rs34134444	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MRPL23	NM_021134	exon2	c.G32A	p.R11Q	.	.	118	5	87	1	G|0.946;A|0.054	136
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	80063794	80063794	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	MSH3	NM_002439	exon14	c.C1939G	p.H647D	.	.	125	9	99	0	.	661
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs75226570		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	44	6	33	1	G|0.500;A|0.500	.
ND4	0	broad.mit.edu	37	MT	11050	11050	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	ENST00000361381	exon1	c.T291C	p.S97S	.	.	53	4	18	0	.	.
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	44324091	44324091	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NDUFV3	NM_021075	exon3	c.A969G	p.Q323Q	.	.	110	6	73	0	.	92
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	56499259	56499259	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	NLRP8	NM_176811	exon10	c.C3127G	p.L1043V	.	.	128	6	93	0	.	361
OR2V2	285659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180582509	180582509	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	OR2V2	NM_206880	exon1	c.C567T	p.A189A	.	.	249	20	192	0	.	69
P2RY4	5030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	69479048	69479048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	P2RY4	NM_002565	exon1	c.G427T	p.A143S	.	.	111	13	101	0	.	540
PAQR4	124222	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	3021213	3021213	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PAQR4	NM_152341	exon2	c.G222T	p.Q74H	.	.	145	8	111	0	.	68
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	34671814	34671814	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PARD3	NM_001184788	exon9	c.C1053T	p.P351P	.	.	249	16	229	0	.	92
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	55719518	55719518	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PCDH15	NM_001142763	exon24	c.C3111T	p.I1037I	.	.	75	8	58	0	.	193
PCSK7	9159	broad.mit.edu	37	11	117079621	117079621	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PCSK7	NM_004716	exon13	c.C1683T	p.S561S	.	.	634	13	482	0	.	658
PGD	5226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	10468143	10468143	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PGD	NM_002631	exon6	c.C465T	p.T155T	.	.	144	10	105	0	.	91
PGGT1B	5229	broad.mit.edu;bcgsc.ca	37	5	114572220	114572220	+	Splice_Site	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PGGT1B	NM_005023	exon6	c.480-1G>T	.	.	.	145	9	111	1	.	90
PLEKHA8	84725	bcgsc.ca	37	7	30113706	30113706	+	Silent	SNP	A	A	G	rs11977829	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PLEKHA8	NM_001197027	exon13	c.A1320G	p.T440T	.	.	172	6	97	0	A|0.748;G|0.252	357
PPP2R5B	5526	broad.mit.edu	37	11	64695831	64695831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PPP2R5B	NM_006244	exon6	c.G656A	p.R219Q	.	.	233	7	188	0	.	660
PRF1	5551	bcgsc.ca	37	10	72358577	72358577	+	Silent	SNP	G	G	A	rs885822	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PRF1	NM_001083116	exon3	c.C900T	p.H300H	.	.	318	8	272	4	G|0.316;A|0.684	578
PRKD1	5587	bcgsc.ca	37	14	30066929	30066929	+	Silent	SNP	A	A	G	rs2230505	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PRKD1	NM_002742	exon16	c.T2202C	p.I734I	.	.	52	4	30	0	T|0.201;G|0.301;C|0.195;A|0.303	1534
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	1554786	1554786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PRPF8	NM_006445	exon41	c.A6572G	p.Q2191R	.	.	166	7	134	0	.	525
PXDN	7837	broad.mit.edu	37	2	1652500	1652500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	PXDN	NM_012293	exon17	c.A3052G	p.T1018A	.	.	226	7	155	0	.	166
RCBTB2	1102	bcgsc.ca	37	13	49085930	49085943	+	Frame_Shift_Del	DEL	AGCTGCCACTCTGC	AGCTGCCACTCTGC	-	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	AGCTGCCACTCTGC	AGCTGCCACTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RCBTB2	NM_001268	exon9	c.746_759del	p.249_253del	.	.	119	5	75	0	.	418
RGPD3	653489	bcgsc.ca	37	2	107049425	107049425	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RGPD3	NM_001144013	exon17	c.T2435G	p.L812R	.	.	737	14	633	6	.	23
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	104303192	104303192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RNF20	NM_019592	exon5	c.T563C	p.I188T	.	.	143	7	136	0	.	231
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	93026974	93026974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	RUNX1T1	NM_001198679	exon4	c.C478T	p.P160S	.	.	110	7	66	0	.	1196
SCN10A	6336	broad.mit.edu	37	3	38797277	38797277	+	Splice_Site	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SCN10A	NM_006514	exon11	c.1461+2T>C	.	.	.	171	5	115	0	.	99
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144891130	144891130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SCRIB	NM_015356	exon15	c.G1764T	p.Q588H	.	.	97	5	101	0	.	228
SEC22C	9117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	42610528	42610528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SEC22C	NM_001201584	exon2	c.T11G	p.I4S	.	.	304	21	250	0	.	90
SH3PXD2A	9644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105362908	105362908	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3PXD2A	NM_014631	exon14	c.C1983A	p.S661S	.	.	55	6	31	0	.	226
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148407630	148407630	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SH3TC2	NM_024577	exon11	c.C1665A	p.I555I	.	.	262	17	186	0	.	92
SLAMF1	6504	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160589594	160589594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SLAMF1	NM_003037	exon5	c.C836T	p.T279M	.	.	103	8	98	1	.	154
SLC25A26	115286	bcgsc.ca	37	3	66419956	66419956	+	Missense_Mutation	SNP	C	C	T	rs13874	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SLC25A26	NM_173471	exon9	c.C623T	p.T208M	.	.	197	7	159	0	C|0.342;T|0.658	46
SMCO2	0	broad.mit.edu	37	12	27648786	27648786	+	Silent	SNP	A	A	G	rs306646	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001145010	exon8	c.A831G	p.A277A	.	.	58	3	49	0	A|0.729;G|0.271	.
SORD	6652	broad.mit.edu	37	15	45364572	45364572	+	Missense_Mutation	SNP	G	G	A	rs146320103	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SORD	NM_003104	exon8	c.G844A	p.V282I	.	.	77	3	73	1	G|0.998;A|0.002	90
SPATA7	55812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88904449	88904449	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SPATA7	NM_018418	exon12	c.A1483G	p.I495V	.	.	122	11	81	0	.	91
SRGAP2	23380	broad.mit.edu;bcgsc.ca	37	1	206634640	206634640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	.	.	.	.	.	.	396	35	308	1	.	.
STARD7	56910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96861116	96861116	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	STARD7	NM_020151	exon2	c.G462A	p.R154R	.	.	154	13	85	0	.	68
SYDE1	85360	broad.mit.edu;bcgsc.ca	37	19	15220108	15220108	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SYDE1	NM_033025	exon2	c.C330A	p.I110I	.	.	237	9	179	1	.	92
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	95916270	95916270	+	Missense_Mutation	SNP	C	C	T	rs201231576	alternate_allele	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_152592	exon7	c.G1447A	p.E483K	.	.	336	22	294	0	.	.
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	51129160	51129160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	SYT3	NM_032298	exon5	c.T1396C	p.F466L	.	.	140	10	117	0	.	155
TACSTD2	4070	bcgsc.ca	37	1	59042181	59042181	+	Missense_Mutation	SNP	G	G	T	rs14008	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	TACSTD2	NM_002353	exon1	c.C648A	p.D216E	.	.	145	5	119	0	G|0.865;T|0.135	90
TAS1R3	83756	broad.mit.edu	37	1	1269237	1269237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	TAS1R3	NM_152228	exon6	c.T1952A	p.L651H	.	.	74	4	52	0	.	22
TMEM8A	58986	bcgsc.ca	37	16	427784	427784	+	Silent	SNP	G	G	A	rs11641742	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	TMEM8A	NM_021259	exon2	c.C186T	p.Y62Y	.	.	238	7	216	4	G|0.455;A|0.545	92
TMEM8A	58986	bcgsc.ca	37	16	427820	427820	+	Silent	SNP	C	C	T	rs12922073	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	TMEM8A	NM_021259	exon2	c.G150A	p.S50S	.	.	241	7	193	1	A|0.000;C|0.470;G|0.000;T|0.530	92
TRIM27	5987	broad.mit.edu;bcgsc.ca	37	6	28887852	28887852	+	Silent	SNP	G	G	A	rs36075786	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	TRIM27	NM_006510	exon3	c.C684T	p.H228H	.	.	176	6	133	1	G|0.995;A|0.005	684
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	19499468	19499468	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UBR4	NM_020765	exon25	c.G3411A	p.E1137E	.	.	157	12	138	0	.	612
UBTF	7343	bcgsc.ca	37	17	42287519	42287519	+	Silent	SNP	C	C	T	rs2071167	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UBTF	NM_014233	exon15	c.G1599A	p.K533K	.	.	107	6	119	0	C|0.599;T|0.401	90
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	35608295	35608295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	UNC5D	NM_080872	exon13	c.T2131C	p.Y711H	.	.	284	23	204	0	.	96
USP39	10713	bcgsc.ca	37	2	85843348	85843348	+	Silent	SNP	C	C	T	rs11544042	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	USP39	NM_001256725	exon1	c.C30T	p.R10R	.	.	112	5	61	0	C|0.936;T|0.064	658
USP5	8078	broad.mit.edu;bcgsc.ca	37	12	6975155	6975155	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	USP5	NM_001098536	exon20	c.A2491T	p.I831F	.	.	157	6	104	0	.	659
WDR35	57539	broad.mit.edu	37	2	20138103	20138103	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	WDR35	NM_001006657	exon19	c.T2019C	p.D673D	.	.	52	4	85	1	.	91
WDR49	151790	broad.mit.edu	37	3	167240162	167240162	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	WDR49	NM_178824	exon12	c.T1659C	p.C553C	.	.	44	3	54	0	.	155
WNK4	65266	broad.mit.edu;bcgsc.ca	37	17	40937151	40937151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	WNK4	NM_032387	exon5	c.C1207A	p.P403T	.	.	140	7	108	1	.	336
WNT9A	7483	bcgsc.ca	37	1	228113046	228113046	+	Silent	SNP	C	C	T	rs8192629	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	WNT9A	NM_003395	exon2	c.G270A	p.A90A	.	.	104	6	79	0	C|0.927;T|0.073	523
YIF1B	90522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38796124	38796124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	YIF1B	NM_001039672	exon8	c.C813G	p.I271M	.	.	281	23	242	0	.	68
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu	37	1	203797536	203797536	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZC3H11A	NM_014827	exon7	c.T284C	p.L95P	.	.	214	11	177	0	.	515
ZER1	10444	broad.mit.edu	37	9	131504918	131504918	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZER1	NM_006336	exon9	c.C1466G	p.T489R	.	.	214	6	175	0	.	91
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30794703	30794703	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001080417	exon3	c.A946T	p.K316X	.	.	223	14	157	0	.	.
ZNF841	284371	broad.mit.edu	37	19	52568422	52568422	+	Missense_Mutation	SNP	T	T	G	rs61743893	byfrequency	TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	.	NM_001136499	exon7	c.A2713C	p.T905P	.	.	182	4	152	1	T|0.939;G|0.061	.
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53279323	53279323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RF-01A-11D-A28X-10	TCGA-K7-A5RF-10B-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9ee0fd7-4827-4171-adec-2f21b3075a50	77617e95-e25c-432e-b8f7-1bb14530e30f	.	ZYG11B	NM_024646	exon11	c.G1811A	p.G604E	.	.	97	14	84	0	.	94
