Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137843669	137843669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	A4GNT	NM_016161	exon3	c.C460T	p.R154C	.	.	137	21	138	0	.	90
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	57216008	57216008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AASDH	NM_181806	exon11	c.A1909G	p.T637A	.	.	137	19	153	0	.	94
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94578571	94578571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ABCA4	NM_000350	exon2	c.A118G	p.I40V	.	.	216	29	202	0	.	162
ABCD4	5826	bcgsc.ca	37	14	74766352	74766352	+	Silent	SNP	A	A	G	rs2301345	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ABCD4	NM_005050	exon3	c.T184C	p.L62L	.	.	193	8	188	2	A|0.717;G|0.283	292
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132297694	132297694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ACAD11	NM_032169	exon15	c.A1720G	p.M574V	.	.	67	10	79	0	.	91
ACADSB	36	bcgsc.ca	37	10	124800853	124800853	+	Silent	SNP	C	C	T	rs1140591	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ACADSB	NM_001609	exon5	c.C639T	p.H213H	.	.	99	5	102	1	A|0.000;C|0.783;G|0.000;T|0.217	92
ADH5	128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100003145	100003146	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ADH5	NM_000671	exon3	c.237_238insG	p.G79fs	.	.	191	29	192	0	.	227
AFAP1L2	84632	bcgsc.ca	37	10	116073696	116073696	+	Silent	SNP	C	C	T	rs3813722	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AFAP1L2	NM_032550	exon7	c.G726A	p.T242T	.	.	144	7	154	2	C|0.396;T|0.604	136
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	12	58121178	58121178	+	Silent	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	AGAP2	NM_001122772	exon17	c.G3045C	p.T1015T	.	.	138	27	107	1	.	716
ALDH16A1	126133	bcgsc.ca	37	19	49969468	49969468	+	Silent	SNP	G	G	A	rs181566168		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ALDH16A1	NM_153329	exon14	c.G1866A	p.A622A	.	.	65	4	60	0	G|0.994;A|0.006	91
ALX4	60529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44289129	44289129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ALX4	NM_021926	exon3	c.G821A	p.R274H	.	.	206	33	107	0	.	90
AMER1	139285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	63412208	63412208	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152424	exon2	c.A959T	p.K320I	.	.	58	6	45	0	.	.
ANKRD26	22852	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27356183	27356183	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ANKRD26	NM_014915	exon10	c.A1110G	p.K370K	.	.	25	4	45	0	.	138
ANKRD36	375248	broad.mit.edu;bcgsc.ca	37	2	97851069	97851069	+	Silent	SNP	A	A	G	rs62154801		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001164315	exon29	c.A1956G	p.Q652Q	.	.	176	7	185	0	A|0.558;G|0.442	.
APOBR	55911	ucsc.edu	37	16	28507452	28507452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	APOBR	NM_018690	exon2	c.G1090T	p.G364W	.	.	19	4	12	2	.	90
ARHGEF26	26084	hgsc.bcm.edu;bcgsc.ca	37	3	153840488	153840488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ARHGEF26	NM_001251962	exon2	c.G707T	p.S236I	.	.	79	4	79	0	.	47
ASAP2	8853	broad.mit.edu;mdanderson.org	37	2	9347355	9347355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASAP2	NM_001135191	exon1	c.A122T	p.E41V	.	.	49	8	32	0	.	90
ASCC2	84164	broad.mit.edu;bcgsc.ca	37	22	30202864	30202865	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	GA	GA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASCC2	NM_032204	exon10	c.937_938del	p.313_313del	.	.	63	8	87	0	.	90
ASCL3	56676	hgsc.bcm.edu	37	11	8959174	8959174	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASCL3	NM_020646	exon2	c.A535T	p.R179X	.	.	85	4	78	0	.	90
ASPG	374569	bcgsc.ca	37	14	104571054	104571054	+	Missense_Mutation	SNP	C	C	G	rs8012505	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001080464	exon9	c.C1032G	p.S344R	.	.	182	6	203	1	C|0.778;G|0.222	.
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176853524	176853524	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ASTN1	NM_004319	exon19	c.C3177A	p.L1059L	.	.	196	28	175	0	.	319
ATP1B3	483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	141632520	141632520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP1B3	NM_001679	exon4	c.C373A	p.L125I	.	.	116	18	102	0	.	90
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36048727	36048727	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATP4A	NM_000704	exon11	c.A1523T	p.D508V	.	.	120	15	87	0	.	91
ATXN1	6310	mdanderson.org	37	6	16327921	16327921	+	Missense_Mutation	SNP	C	C	A	rs201030692		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ATXN1	NM_001128164	exon7	c.G621T	p.Q207H	.	.	67	14	52	1	.	93
BMP7	655	broad.mit.edu	37	20	55841132	55841132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	BMP7	NM_001719	exon1	c.C47A	p.A16E	.	.	34	4	18	1	.	187
C12orf74	338809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93100546	93100546	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C12orf74	NM_001037671	exon2	c.A139T	p.T47S	.	.	113	15	109	0	.	90
C17orf49	124944	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6920313	6920313	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C17orf49	NM_174893	exon5	c.A494C	p.K165T	.	.	53	7	63	2	.	135
C1QA	712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22965803	22965803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	C1QA	NM_015991	exon3	c.A641T	p.Q214L	.	.	123	23	95	0	.	90
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1254427	1254427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CACNA1H	NM_021098	exon10	c.C2420T	p.T807M	.	.	307	59	192	0	.	67
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156303388	156303388	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CCT3	NM_005998	exon5	c.G254C	p.R85P	.	.	55	6	52	0	.	92
CCT6P1	643253	broad.mit.edu	37	7	65222968	65222968	+	RNA	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NR_003110	exon5	c.589-2A>G	.	.	.	8	3	14	0	.	.
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7807945	7807945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CD209	NM_021155	exon7	c.C1195A	p.P399T	.	.	61	11	66	0	.	91
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	4892439	4892439	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CDYL	NM_004824	exon2	c.C517A	p.Q173K	.	.	126	24	113	0	.	90
CELA3A	10136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22336295	22336295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CELA3A	NM_005747	exon7	c.T740C	p.I247T	.	.	375	61	326	0	.	45
CEP89	84902	hgsc.bcm.edu;bcgsc.ca	37	19	33444519	33444519	+	Splice_Site	SNP	A	A	G	rs146108457	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CEP89	NM_032816	exon5	c.492+2T>C	.	.	.	41	6	45	0	A|0.924;G|0.076	94
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240071769	240071769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CHRM3	NM_000740	exon5	c.A1018G	p.N340D	.	.	185	26	167	0	.	95
CIDECP	152302	ucsc.edu	37	3	10059436	10059436	+	RNA	SNP	T	T	C	rs8411	byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	17	7	11	0	T|0.624;C|0.376	.
COL6A5	256076	broad.mit.edu;bcgsc.ca	37	3	130124491	130124491	+	Silent	SNP	G	G	A	rs10934940	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_153264	exon14	c.G4341A	p.A1447A	.	.	372	11	293	0	G|0.507;A|0.493	.
CTCF	10664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67655390	67655390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CTCF	NM_006565	exon7	c.A1253G	p.Q418R	.	.	122	18	118	0	.	91
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	CTGF	NM_001901	exon2	c.A219C	p.P73P	.	.	4	4	0	0	T|0.000;G|1.000	90
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109283310	109283310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DAO	NM_001917	exon4	c.C375A	p.F125L	.	.	125	11	97	0	.	92
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6643111	6643111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCHS1	NM_003737	exon21	c.C9796T	p.P3266S	.	.	126	14	102	0	.	73
DCTN2	10540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57929270	57929270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DCTN2	NM_001261412	exon4	c.G267T	p.E89D	.	.	87	11	82	0	.	23
DDX18	8886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	118575029	118575029	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DDX18	NM_006773	exon2	c.A95G	p.N32S	.	.	23	4	26	0	.	290
DIXDC1	85458	broad.mit.edu	37	11	111851475	111851475	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DIXDC1	.	.	.	.	.	.	94	4	88	0	.	91
DNAAF2	55172	hgsc.bcm.edu	37	14	50100800	50100800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_018139	exon1	c.G1068T	p.E356D	.	.	10	6	5	0	.	.
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124402197	124402197	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH10	NM_207437	exon63	c.A10715G	p.E3572G	.	.	166	28	110	0	.	95
DNAH14	127602	broad.mit.edu;bcgsc.ca	37	1	225156485	225156485	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH14	NM_001373	exon7	c.A676G	p.K226E	.	.	210	7	224	0	.	23
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20981196	20981196	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DNAH3	NM_017539	exon52	c.A8376G	p.P2792P	.	.	143	26	109	0	.	167
DPPA2	151871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	109028174	109028174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DPPA2	NM_138815	exon4	c.A185G	p.H62R	.	.	111	18	73	0	.	93
DUOXA1	90527	ucsc.edu	37	15	45409951	45409951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	DUOXA1	NM_144565	exon11	c.A1214G	p.D405G	.	.	71	1	73	0	.	227
EFCAB12	90288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	129147317	129147317	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_207307	exon1	c.T15C	p.Y5Y	.	.	268	38	244	1	.	.
EFHA1	221154	hgsc.bcm.edu	37	13	22178199	22178199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFHA1	NM_152726	exon1	c.G89A	p.R30Q	.	.	7	5	2	0	.	90
EFHA2	286097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	16961997	16961997	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFHA2	NM_181723	exon10	c.A1082G	p.Y361C	.	.	64	16	63	1	.	91
EFNA3	1944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	155057577	155057577	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EFNA3	NM_004952	exon2	c.G139A	p.E47K	.	.	137	27	127	0	.	90
EHD2	30846	broad.mit.edu;mdanderson.org	37	19	48229309	48229309	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EHD2	NM_014601	exon4	c.A743T	p.E248V	.	.	52	8	51	0	.	92
EMR2	30817	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14865791	14865791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EMR2	NM_013447	exon14	c.T1565C	p.V522A	.	.	221	33	182	1	.	524
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22902826	22902826	+	Silent	SNP	C	C	T	rs145476843	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EPHA8	NM_020526	exon3	c.C276T	p.D92D	.	.	406	82	310	1	C|1.000;T|0.000	1380
ERC2	26059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56468548	56468548	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ERC2	NM_015576	exon2	c.T488A	p.L163H	.	.	153	20	137	1	.	24
ESRP1	54845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95676928	95676928	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ESRP1	NM_001122827	exon7	c.C648T	p.S216S	.	.	190	18	137	0	.	94
ESX1	80712	bcgsc.ca	37	X	103499487	103499487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ESX1	NM_153448	exon1	c.G44A	p.R15H	.	.	76	4	58	0	.	131
EXT2	2132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44255728	44255728	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EXT2	NM_000401	exon12	c.A1969G	p.M657V	.	.	195	31	160	0	.	524
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72234031	72234031	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	EYA1	NM_172059	exon5	c.A356G	p.Q119R	.	.	335	38	288	0	.	652
FAM120AOS	158293	ucsc.edu	37	9	96214928	96214928	+	Missense_Mutation	SNP	G	G	A	rs1055710	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM120AOS	NM_198841	exon1	c.C64T	p.L22F	.	.	21	4	14	0	G|0.688;A|0.312	90
FAM196B	100131897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169309899	169309899	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001129891	exon2	c.A1004G	p.N335S	.	.	165	23	146	0	.	.
FAM22G	441457	bcgsc.ca	37	9	99700934	99700934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM22G	NM_001170741	exon7	c.C1729T	p.P577S	.	.	543	66	474	4	.	69
FAM45B	55855	broad.mit.edu;ucsc.edu;mdanderson.org	37	X	129629187	129629187	+	RNA	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM45B	.	.	.	.	.	.	185	57	197	0	.	63
FAM83H	286077	broad.mit.edu	37	8	144810584	144810584	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FAM83H	NM_198488	exon5	c.C1047T	p.H349H	.	.	92	3	58	0	.	92
FBRSL1	57666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	133102386	133102386	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBRSL1	NM_001142641	exon3	c.A556T	p.S186C	.	.	185	27	147	0	.	70
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100192090	100192090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FBXO24	NM_012172	exon6	c.A992G	p.K331R	.	.	127	15	110	0	.	229
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FRG1B	.	.	.	.	.	.	1097	43	1157	29	.	22
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40031879	40031879	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	FSIP1	NM_152597	exon7	c.A767G	p.K256R	.	.	25	6	30	0	.	517
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128118132	128118132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GAPVD1	NM_015635	exon24	c.G4048A	p.D1350N	.	.	221	35	214	0	.	93
GGH	8836	broad.mit.edu	37	8	63938819	63938819	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GGH	NM_003878	exon5	c.A397T	p.T133S	.	.	107	4	79	1	.	90
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58602018	58602018	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GLYATL2	NM_145016	exon6	c.T769G	p.Y257D	.	.	75	15	74	0	.	92
GNAS	2778	hgsc.bcm.edu	37	20	57429627	57429627	+	Missense_Mutation	SNP	C	C	A	rs61749698		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GNAS	NM_080425	exon1	c.C1307A	p.A436D	.	.	7	6	3	0	C|0.930;A|0.070	4767
GPR112	139378	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	135431901	135431901	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GPR112	NM_153834	exon6	c.T6036A	p.S2012S	.	.	79	22	65	1	.	183
GPR124	25960	broad.mit.edu	37	8	37688966	37688966	+	Missense_Mutation	SNP	G	G	A	rs111714720	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	GPR124	NM_032777	exon8	c.G958A	p.V320M	.	.	169	6	145	2	G|0.992;A|0.008	157
GPR144	347088	hgsc.bcm.edu	37	9	127215430	127215430	+	Missense_Mutation	SNP	G	G	C	rs184300525	by1000genomes	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001161808	exon4	c.G454C	p.D152H	.	.	4	4	2	0	G|0.991;C|0.009	.
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156696144	156696144	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon3	c.A102T	p.E34D	.	.	30	4	41	0	.	.
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	156726268	156726268	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_000857	exon13	c.C1723A	p.P575T	.	.	186	32	169	0	.	.
HACL1	26061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	15613198	15613198	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HACL1	NM_012260	exon12	c.A1072T	p.K358X	.	.	47	7	62	0	.	90
HHAT	55733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	210847644	210847644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HHAT	NM_001170587	exon11	c.A1408T	p.T470S	.	.	107	20	92	0	.	92
HLA-DQA2	3118	hgsc.bcm.edu	37	6	32714164	32714164	+	Missense_Mutation	SNP	T	T	C	rs115121776	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HLA-DQA2	NM_020056	exon4	c.T761C	p.L254P	.	.	177	9	147	0	T|0.982;C|0.018	90
HLA-F-AS1	285830	broad.mit.edu;bcgsc.ca	37	6	29713506	29713506	+	RNA	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	64	11	66	0	.	.
HOXB7	3217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46685442	46685442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HOXB7	NM_004502	exon2	c.G416A	p.R139Q	.	.	85	10	74	0	.	90
HTR1A	3350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	63256701	63256701	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTR1A	NM_000524	exon1	c.G846A	p.R282R	.	.	132	19	105	0	.	94
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3179109	3179109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	HTT	NM_002111	exon34	c.G4458T	p.Q1486H	.	.	55	10	58	0	.	281
IGF2BP1	10642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47119724	47119724	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGF2BP1	NM_006546	exon9	c.T1062C	p.D354D	.	.	249	46	227	2	.	226
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	201184848	201184848	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IGFN1	NM_001164586	exon15	c.G9177T	p.G3059G	.	.	213	37	193	0	.	71
IL12RB2	3595	bcgsc.ca	37	1	67852335	67852335	+	Silent	SNP	G	G	A	rs4297265	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL12RB2	NM_001559	exon14	c.G1929A	p.T643T	.	.	281	13	248	1	A|0.433;G|0.567	92
IL17REL	400935	bcgsc.ca	37	22	50439194	50439194	+	Missense_Mutation	SNP	C	C	T	rs9617090	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL17REL	NM_001001694	exon5	c.G208A	p.G70R	.	.	136	5	120	1	C|0.696;T|0.304	23
IL1RAPL1	11141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	29973747	29973747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL1	NM_014271	exon11	c.C1901T	p.P634L	.	.	118	32	77	0	.	134
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104999216	104999216	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IL1RAPL2	NM_017416	exon10	c.A1238G	p.Q413R	.	.	169	40	144	0	.	194
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121712594	121712594	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ILDR1	NM_001199799	exon7	c.A1002T	p.P334P	.	.	201	21	185	0	.	91
INADL	10207	bcgsc.ca	37	1	62261168	62261168	+	Missense_Mutation	SNP	A	A	G	rs7516332	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	INADL	NM_176877	exon10	c.A1198G	p.I400V	.	.	154	6	125	0	A|0.589;G|0.411	94
ITGB1	3688	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	33217025	33217025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITGB1	NM_002211	exon5	c.A544C	p.I182L	.	.	55	4	65	0	.	1084
ITPRIPL1	150771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96992598	96992598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ITPRIPL1	NM_178495	exon1	c.A253G	p.T85A	.	.	138	18	130	0	.	69
IZUMO1	284359	bcgsc.ca	37	19	49247786	49247786	+	Silent	SNP	G	G	A	rs8108468	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	IZUMO1	NM_182575	exon4	c.C321T	p.F107F	.	.	147	7	156	0	G|0.551;A|0.449	91
JAG1	182	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	10644621	10644621	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JAG1	NM_000214	exon3	c.T429C	p.N143N	.	.	193	17	164	0	.	1273
JUN	3725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	59248012	59248012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	JUN	NM_002228	exon1	c.C731T	p.P244L	.	.	81	19	69	0	.	1270
KCNC2	3747	broad.mit.edu;bcgsc.ca	37	12	75601331	75601331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KCNC2	NM_139137	exon2	c.G433A	p.E145K	.	.	337	12	243	0	.	224
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10602442	10602442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KEAP1	NM_012289	exon3	c.G1136T	p.G379V	.	.	112	14	75	0	.	637
KIAA0753	9851	bcgsc.ca	37	17	6515454	6515454	+	Missense_Mutation	SNP	C	C	T	rs2289643	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA0753	NM_014804	exon8	c.G1330A	p.D444N	.	.	48	4	78	0	C|0.456;T|0.544	90
KIAA1191	57179	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	175774612	175774612	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1191	NM_020444	exon9	c.T909A	p.T303T	.	.	30	4	27	0	.	91
KIAA1239	57495	bcgsc.ca	37	4	37445885	37445885	+	Silent	SNP	T	T	C	rs11724784	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001144990	exon7	c.T2275C	p.L759L	.	.	122	6	129	0	T|0.812;C|0.188	.
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138564336	138564336	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1549	NM_020910	exon12	c.T4293C	p.D1431D	.	.	27	5	26	0	.	369
KIAA1683	80726	broad.mit.edu;bcgsc.ca	37	19	18377981	18377981	+	Silent	SNP	C	C	G	rs61740692	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIAA1683	NM_001145304	exon3	c.G369C	p.L123L	.	.	245	8	188	0	C|0.984;G|0.016	92
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39607439	39607439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KIF6	NM_145027	exon4	c.G346A	p.D116N	.	.	147	18	131	0	.	713
KPTN	11133	hgsc.bcm.edu	37	19	47983128	47983128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KPTN	NM_007059	exon8	c.C779A	p.A260D	.	.	88	4	50	0	.	91
KRTAP5-10	387273	mdanderson.org	37	11	71276681	71276681	+	Silent	SNP	T	T	C	rs113879786	bycluster;byfrequency;by1000genomes	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KRTAP5-10	NM_001012710	exon1	c.T48C	p.G16G	.	.	135	40	91	0	T|0.717;C|0.283	91
KRTAP5-10	387273	mdanderson.org	37	11	71276702	71276702	+	Silent	SNP	C	C	T	rs113977776		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	KRTAP5-10	NM_001012710	exon1	c.C69T	p.G23G	.	.	118	18	82	0	C|0.500;T|0.500	91
LDB3	11155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88452294	88452294	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LDB3	NM_001171610	exon8	c.C1066A	p.Q356K	.	.	133	6	122	0	.	92
LHFPL3	375612	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	103969504	103969504	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_199000	exon1	c.A277G	p.S93G	.	.	63	7	73	1	.	.
LILRB3	11025	broad.mit.edu	37	19	54725007	54725007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LILRB3	NM_006864	exon5	c.C903A	p.N301K	.	.	136	5	110	0	.	93
LOC100294362	0	ucsc.edu	37	17	78327673	78327673	+	RNA	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	44	12	19	0	.	.
LOC645752	0	broad.mit.edu	37	15	78214075	78214075	+	RNA	SNP	T	T	C	rs4886971	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	367	7	326	1	T|0.824;C|0.176	.
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	40360391	40360391	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN2	NM_020737	exon3	c.T1661C	p.M554T	.	.	95	11	85	0	.	93
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42356745	42356745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	LRFN5	NM_152447	exon3	c.T917C	p.L306P	.	.	121	15	130	0	.	97
LRRC37A4P	55073	broad.mit.edu	37	17	43587524	43587524	+	RNA	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	107	18	134	0	.	.
LRRC72	100506049	mdanderson.org	37	7	16566643	16566643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001195280	exon1	c.A66T	p.E22D	.	.	26	5	15	0	.	.
MAML2	84441	ucsc.edu	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MAML2	NM_032427	exon2	c.G1812A	p.Q604Q	.	.	141	23	158	0	C|0.500;T|0.500	850
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3298983	3298983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MEFV	NM_000243	exon4	c.G1282A	p.E428K	.	.	72	17	55	0	.	228
MLLT10P1	140678	bcgsc.ca	37	20	29637999	29637999	+	RNA	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	50	4	38	0	.	.
MRGPRX4	117196	bcgsc.ca	37	11	18194878	18194878	+	Missense_Mutation	SNP	T	T	G	rs2445180	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MRGPRX4	NM_054032	exon1	c.T75G	p.N25K	.	.	408	10	333	4	T|0.706;G|0.294	91
MSH5	4439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31726633	31726633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MSH5	NM_025259	exon15	c.G1358A	p.S453N	.	.	217	29	161	0	.	661
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9073366	9073366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC16	NM_024690	exon3	c.C14080T	p.L4694F	.	.	188	37	187	0	.	566
MUC20	200958	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	195452975	195452978	+	Frame_Shift_Del	DEL	CCCA	CCCA	-	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	CCCA	CCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_152673	exon3	c.988_991del	p.330_331del	.	.	455	44	416	0	.	.
MUC2	4583	bcgsc.ca	37	11	1092884	1092884	+	Missense_Mutation	SNP	C	C	T	rs201415503		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC2	NM_002457	exon30	c.C4703T	p.T1568M	.	.	257	15	236	4	.	90
MUC2	4583	bcgsc.ca	37	11	1093289	1093289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC2	NM_002457	exon30	c.C5108A	p.T1703N	.	.	171	8	140	2	.	90
MUC2	4583	mdanderson.org	37	11	1093304	1093304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC2	NM_002457	exon30	c.C5123T	p.T1708I	.	.	200	13	153	5	.	90
MUC4	4585	bcgsc.ca	37	3	195509676	195509676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MUC4	NM_018406	exon2	c.G8775C	p.Q2925H	.	.	241	16	217	10	.	90
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71346647	71346647	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	MUC7,NS,carcinoma,+1	MUC7	NM_001145007	exon4	c.C186T	p.S62S	.	.	161	30	161	0	.	93
MYH3	4621	hgsc.bcm.edu	37	17	10543955	10543955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	MYH3	NM_002470	exon20	c.C2214A	p.D738E	.	.	124	5	119	0	.	95
NAV3	89795	broad.mit.edu;ucsc.edu	37	12	78452777	78452777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NAV3	NM_014903	exon12	c.T2518C	p.Y840H	.	.	57	8	60	1	.	279
NDUFAF7	55471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37474750	37474750	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_144736	exon9	c.T1088C	p.M363T	.	.	110	17	98	0	.	.
NEK9	91754	hgsc.bcm.edu;bcgsc.ca	37	14	75567697	75567697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NEK9	NM_033116	exon16	c.A2000C	p.D667A	.	.	60	5	80	0	.	359
NFKBID	84807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36387302	36387302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NFKBID	NM_139239	exon7	c.G397A	p.V133I	.	.	106	9	82	0	.	90
NOL8	55035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	95077366	95077366	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NOL8	NM_017948	exon7	c.C1541T	p.T514I	.	.	84	8	99	0	.	23
NPHP4	261734	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	5964775	5964775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NPHP4	NM_015102	exon16	c.G2045A	p.R682Q	.	.	297	33	210	2	.	515
NR1H3	10062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47282864	47282864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	NR1H3	NM_001251934	exon5	c.C590T	p.S197F	.	.	210	32	165	0	.	228
OBSL1	23363	bcgsc.ca	37	2	220419339	220419339	+	Missense_Mutation	SNP	T	T	C	rs10932814	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OBSL1	NM_015311	exon15	c.A4733G	p.Q1578R	.	.	376	10	305	2	T|0.030;C|0.970	71
OR1D5	8386	bcgsc.ca	37	17	2966565	2966565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_014566	exon1	c.C337T	p.L113F	.	.	625	15	609	1	.	.
OR3A4P	390756	bcgsc.ca	37	17	3214796	3214796	+	RNA	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	45	6	32	0	.	.
OR4N4	283694	bcgsc.ca	37	15	22383189	22383189	+	Silent	SNP	G	G	A	rs1820851	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR4N4	NM_001005241	exon1	c.G717A	p.T239T	.	.	118	6	103	0	G|0.537;A|0.463	73
OR6C4	341418	hgsc.bcm.edu;broad.mit.edu	37	12	55945800	55945800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C4	NM_001005494	exon1	c.G790T	p.E264X	.	.	85	6	104	0	.	68
OR6C68	403284	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	55886941	55886941	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OR6C68	NM_001005519	exon1	c.A780G	p.P260P	.	.	76	15	109	0	.	69
OSCAR	126014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54600387	54600387	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	OSCAR	NM_130771	exon4	c.T147A	p.P49P	.	.	93	16	95	0	.	68
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster;byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PABPC3	NM_030979	exon1	c.C786T	p.Y262Y	.	.	157	10	154	2	C|0.999;T|0.001	72
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	78940987	78940987	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PAPD4	NM_173797	exon9	c.C793T	p.P265S	.	.	184	24	183	0	.	69
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55581783	55581783	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDH15	NM_001142763	exon35	c.T5724C	p.S1908S	.	.	71	8	98	0	.	193
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140175547	140175547	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCDHA2	NM_031495	exon1	c.A998T	p.H333L	.	.	207	31	182	0	.	94
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	56139664	56139664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PCK1	NM_002591	exon8	c.C1313T	p.P438L	.	.	40	7	30	0	.	227
PDZRN3	23024	ucsc.edu;bcgsc.ca	37	3	73433494	73433494	+	Silent	SNP	T	T	C	rs13091636	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PDZRN3	NM_015009	exon10	c.A2223G	p.S741S	.	.	50	5	48	0	A|0.000;C|0.372;T|0.628	232
PHKG2	5261	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	16	30760208	30760208	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PHKG2	NM_001172432	exon2	c.A67T	p.K23X	.	.	214	33	186	0	.	334
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	18279669	18279669	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIK3R2	NM_005027	exon15	c.G1942T	p.E648X	.	.	217	30	165	0	.	1311
PIN4	5303	bcgsc.ca	37	X	71401607	71401607	+	Missense_Mutation	SNP	G	G	A	rs6525589	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIN4	NM_001170747	exon1	c.G47A	p.R16Q	.	.	279	8	233	3	G|0.193;A|0.807	130
PIN4	5303	bcgsc.ca	37	X	71401614	71401614	+	Missense_Mutation	SNP	C	C	A	rs7058353	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIN4	NM_001170747	exon1	c.C54A	p.S18R	.	.	292	8	237	2	C|0.217;A|0.783	130
PIP4K2B	8396	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	36955561	36955561	+	Silent	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PIP4K2B	NM_003559	exon1	c.C117T	p.S39S	.	.	74	17	58	0	.	266
PLA2G16	11145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63365558	63365558	+	Silent	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G16	NM_001128203	exon3	c.A93G	p.G31G	.	.	271	42	268	0	.	91
PLA2G4A	5321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186909157	186909157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PLA2G4A	NM_024420	exon10	c.G964T	p.A322S	.	.	70	14	73	0	.	721
PLSCR5	389158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	146318107	146318107	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001085420	exon2	c.A157T	p.S53C	.	.	46	9	44	0	.	.
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131195912	131195912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PODXL	NM_001018111	exon2	c.A381C	p.K127N	.	.	288	45	213	0	.	136
POLR2J4	84820	bcgsc.ca	37	7	44005528	44005528	+	RNA	SNP	C	C	T	rs11766894	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	.	.	.	203	6	235	0	C|0.874;T|0.126	.
PRIM2	5558	bcgsc.ca	37	6	57472389	57472389	+	RNA	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PRIM2	.	.	.	.	.	.	245	14	188	0	.	227
PSMC1	5700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90730490	90730490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMC1	NM_002802	exon6	c.G571A	p.D191N	.	.	86	12	91	0	.	90
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231927267	231927267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PSMD1	NM_002807	exon4	c.C182T	p.A61V	.	.	53	6	48	0	.	92
PTCHD2	57540	broad.mit.edu	37	1	11586811	11586811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PTCHD2	NM_020780	exon13	c.C2717T	p.T906M	.	.	83	9	53	1	.	209
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	40980734	40980734	+	Silent	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PTPRT	NM_007050	exon10	c.C1752A	p.T584T	.	.	139	10	102	0	.	664
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52339318	52339318	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	PXDNL	NM_144651	exon13	c.C1526G	p.A509G	.	.	53	9	33	0	.	70
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34823722	34823722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RAI14	NM_001145525	exon17	c.A1784C	p.K595T	.	.	151	30	121	0	.	91
RANGAP1	5905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41652812	41652812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RANGAP1	NM_002883	exon8	c.G791A	p.R264Q	.	.	74	10	64	0	.	90
RB1CC1	9821	bcgsc.ca	37	8	53586706	53586706	+	Missense_Mutation	SNP	A	A	G	rs17337252	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RB1CC1	NM_001083617	exon7	c.T701C	p.M234T	.	.	174	9	131	0	A|0.533;G|0.467	170
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205065957	205065957	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBBP5	NM_005057	exon12	c.G1249A	p.G417S	.	.	124	22	111	0	.	226
RBPJ	3516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	26426076	26426076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	RBPJ	NM_005349	exon7	c.G648T	p.Q216H	.	.	83	7	65	0	.	659
REV3L	5980	ucsc.edu;bcgsc.ca	37	6	111696852	111696852	+	Silent	SNP	T	T	C	rs458486	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	REV3L	NM_002912	exon13	c.A2706G	p.G902G	.	.	41	4	44	0	T|0.619;C|0.381	294
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92731170	92731170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SAMD9	NM_001193307	exon2	c.A4241G	p.Q1414R	.	.	120	17	146	0	.	140
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144892681	144892681	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SCRIB	NM_015356	exon13	c.C1498G	p.P500A	.	.	151	20	109	0	.	228
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	71334929	71334929	+	Missense_Mutation	SNP	C	C	T	rs199923333		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SDK2	NM_001144952	exon45	c.G6316A	p.D2106N	.	.	281	22	227	0	C|0.999;T|0.000	24
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17789515	17789515	+	Silent	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SH3GL2	NM_003026	exon6	c.T591A	p.A197A	.	.	91	19	66	0	.	91
SIAH2	6478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	150460068	150460068	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SIAH2	NM_005067	exon2	c.A835G	p.T279A	.	.	366	50	338	2	.	227
SLC12A3	6559	broad.mit.edu;ucsc.edu	37	16	56920369	56920369	+	Silent	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC12A3	NM_001126108	exon16	c.C2019A	p.I673I	.	.	89	12	61	1	.	155
SLC25A5	292	hgsc.bcm.edu	37	X	118603984	118603984	+	Missense_Mutation	SNP	G	G	A	rs199678822		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SLC25A5,NS,carcinoma,0	SLC25A5	NM_001152	exon2	c.G472A	p.G158S	.	.	103	5	62	2	.	131
SLC43A2	124935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1480000	1480000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC43A2	NM_152346	exon13	c.A1439T	p.Q480L	.	.	78	18	63	1	.	91
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	481703	481703	+	Silent	SNP	G	G	A	rs200474984		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A3	NM_004174	exon9	c.C1494T	p.I498I	.	.	141	13	129	0	G|0.999;A|0.001	90
SLC9A9	285195	broad.mit.edu;ucsc.edu	37	3	143292967	143292967	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLC9A9	NM_173653	exon8	c.G963A	p.W321X	.	.	438	68	382	1	.	229
SLC9C2	284525	broad.mit.edu;mdanderson.org	37	1	173478714	173478714	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_178527	exon24	c.T3032G	p.I1011S	.	.	128	18	123	1	.	.
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88328465	88328465	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SLITRK5	NM_015567	exon2	c.C822A	p.D274E	.	.	121	17	93	0	.	94
SNTA1	6640	ucsc.edu	37	20	32000201	32000201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SNTA1	NM_003098	exon5	c.C941A	p.A314D	.	.	73	3	52	0	.	91
SOCS5	9655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46986955	46986955	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	SOCS5,NS,carcinoma,0	SOCS5	NM_144949	exon2	c.G1286A	p.R429Q	.	.	216	25	245	0	.	659
SPOCK3	50859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	168155168	168155168	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	SPOCK3	NM_016950	exon2	c.A157T	p.K53X	.	.	141	27	141	0	.	136
STARD6	147323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	51851176	51851176	+	Silent	SNP	T	T	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	STARD6	NM_139171	exon6	c.A549C	p.I183I	.	.	118	10	111	0	.	91
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	17349528	17349528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TBC1D5	NM_014744	exon14	c.T1094C	p.V365A	.	.	190	38	224	0	.	91
TCF12	6938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	57212181	57212181	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TCF12	NM_207036	exon2	c.A70G	p.S24G	.	.	143	20	149	0	.	1085
THAP11	57215	broad.mit.edu	37	16	67876796	67876796	+	Silent	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	THAP11	NM_020457	exon1	c.A339G	p.Q113Q	.	.	15	6	24	0	.	90
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	71836182	71836182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TJP2	NM_001170416	exon5	c.G815A	p.R272H	.	.	72	6	58	0	.	115
TLX3	30012	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	170738472	170738472	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TLX3	NM_021025	exon3	c.C745T	p.Q249X	.	.	322	38	242	0	.	658
TMEM14C	51522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	10728899	10728899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TMEM14C	NM_001165258	exon5	c.A226G	p.M76V	.	.	79	12	73	0	.	90
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	47251729	47251729	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TNFRSF21	NM_014452	exon3	c.A1188T	p.K396N	.	.	124	14	114	0	.	227
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7576928	7576928	+	Splice_Site	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	TP53,NS,carcinoma,0	TP53	NM_000546	exon10	c.920-2A>G	.	.	.	193	38	173	1	.	70225
TRPM5	29850	bcgsc.ca	37	11	2432964	2432964	+	Silent	SNP	T	T	C	rs2074234	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TRPM5	NM_014555	exon17	c.A2508G	p.T836T	.	.	229	7	229	4	C|0.328;N|0.001;T|0.671	137
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	58141073	58141073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TSPAN31	NM_005981	exon6	c.A633G	p.X211W	.	.	68	7	59	0	.	446
TTBK2	146057	broad.mit.edu	37	15	43170754	43170754	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TTBK2	NM_173500	exon2	c.G62A	p.W21X	.	.	87	4	61	3	.	338
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179438598	179438598	+	Silent	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	TTN	NM_001267550	exon326	c.G72261A	p.L24087L	.	.	127	14	123	0	.	636
UGT2B28	54490	ucsc.edu	37	4	70160277	70160277	+	Missense_Mutation	SNP	T	T	G	rs6843900		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	UGT2B28	NM_053039	exon6	c.T1340G	p.I447R	.	.	35	5	40	0	T|0.630;G|0.370	91
UGT2B28	54490	ucsc.edu	37	4	70160309	70160309	+	Missense_Mutation	SNP	C	C	G	rs6828191		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	UGT2B28	NM_053039	exon6	c.C1372G	p.H458D	.	.	47	6	52	0	C|0.602;G|0.398	91
UNC5C	8633	broad.mit.edu	37	4	96127921	96127921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	UNC5C	NM_003728	exon11	c.T1760C	p.L587P	.	.	74	3	92	0	.	94
VDR	7421	bcgsc.ca	37	12	48238757	48238757	+	Silent	SNP	A	A	G	rs731236	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	VDR	NM_001017536	exon10	c.T1206C	p.I402I	.	.	158	6	126	1	A|0.692;G|0.308	188
VPS18	57617	broad.mit.edu	37	15	41191163	41191163	+	Missense_Mutation	SNP	G	G	A	rs140142469	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	VPS18	NM_020857	exon3	c.G292A	p.A98T	.	.	159	4	151	0	G|0.995;A|0.005	155
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122396358	122396358	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR66	NM_001178003	exon12	c.C1911A	p.N637K	.	.	139	17	111	0	.	92
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	68365900	68365900	+	Missense_Mutation	SNP	G	G	A	rs35021866		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WDR92	NM_001256476	exon5	c.C607T	p.R203W	.	.	117	9	119	0	G|0.983;A|0.017	68
WNT1	7471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49374980	49374980	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	WNT1	NM_005430	exon4	c.T670C	p.S224P	.	.	242	28	189	0	.	1083
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75245225	75245225	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	YLPM1	NM_019589	exon2	c.A949G	p.K317E	.	.	235	43	242	0	.	71
ZAK	0	bcgsc.ca	37	2	174131392	174131392	+	Missense_Mutation	SNP	T	T	C	rs35608243	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZAK	NM_016653	exon20	c.T2317C	p.Y773H	.	.	141	6	109	0	T|0.899;C|0.101	522
ZBTB18	10472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244217640	244217640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_205768	exon2	c.G564T	p.E188D	.	.	224	42	182	0	.	.
ZNF445	353274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44492403	44492403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF445	NM_181489	exon5	c.G650A	p.G217E	.	.	125	9	110	0	.	91
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31040266	31040266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF536	NM_014717	exon4	c.G3740T	p.G1247V	.	.	85	17	81	0	.	144
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40520371	40520371	+	Silent	SNP	A	A	T	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF546	NM_178544	exon7	c.A1194T	p.S398S	.	.	80	13	101	0	.	155
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85327447	85327447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF592	NM_014630	exon4	c.G1541C	p.S514T	.	.	196	33	154	0	.	96
ZNF778	197320	bcgsc.ca	37	16	89293271	89293271	+	Missense_Mutation	SNP	A	A	C	rs28417933	byfrequency	TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	NM_001201407	exon7	c.A575C	p.K192T	.	.	147	6	162	1	A|0.293;C|0.707	.
ZNF790	388536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37310227	37310227	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	ZNF790	NM_206894	exon5	c.G1019C	p.C340S	.	.	77	14	79	0	.	92
VEPH1	79674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	157188168	157188169	+	Missense_Mutation	DNP	AG	AG	TT	novel		TCGA-K7-A5RG-01A-11D-A28X-10	TCGA-K7-A5RG-10A-01D-A28X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95bf87d5-3675-43fb-9dad-5e8968afcf13	c34592de-1c9f-4df8-8565-e1ed94a51992	.	.	.	.	.	p.F97I	.	.	.	.	.	.	.	
