Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28296456	28296456	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ADAMTS5	NM_007038	exon8	c.G2709A	p.Q903Q	.	.	43	15	56	0	.	229
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	163	3	195	6	.	227
AEN	64782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	89169543	89169543	+	Nonsense_Mutation	SNP	C	C	T	rs199532354		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AEN	NM_022767	exon2	c.C103T	p.R35X	.	.	23	5	15	0	C|0.998;T|0.002	226
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12356735	12356735	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	AFG3L2	NM_006796	exon9	c.A1122C	p.G374G	.	.	51	11	58	0	.	90
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74283386	74283387	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon11	c.1428_1428del	p.476_476del	.	.	68	23	111	0	.	96
ALB	213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	74285295	74285296	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ALB	NM_000477	exon13	c.1724_1725insC	p.F575fs	.	.	62	18	51	0	.	96
ARHGAP11B	89839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	30926529	30926529	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ARHGAP11B	NM_001039841	exon4	c.A454G	p.K152E	.	.	431	113	461	0	.	22
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	25965885	25965885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ASXL2	NM_018263	exon12	c.G3321T	p.M1107I	.	.	57	13	35	0	.	23
ATN1	1822	hgsc.bcm.edu	37	12	7045939	7045939	+	Missense_Mutation	SNP	T	T	G	rs146578563	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ATN1	NM_001007026	exon5	c.T1509G	p.H503Q	.	.	44	4	43	0	C|0.001;G|0.000;T|0.999	139
ATP6V1B2	526	broad.mit.edu	37	8	20054989	20054989	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ATP6V1B2	NM_001693	exon1	c.G72A	p.P24P	.	.	70	4	78	0	.	90
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96052422	96052422	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BMPR1B	NM_001256793	exon8	c.A925G	p.T309A	.	.	132	33	162	0	.	1378
BNIP2	663	bcgsc.ca	37	15	59963488	59963488	+	Silent	SNP	A	A	G	rs1135148	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BNIP2	NM_004330	exon7	c.T964C	p.L322L	.	.	40	4	76	0	A|0.703;G|0.297	228
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31672781	31672781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_182519	exon4	c.G761A	p.R254H	.	.	33	12	32	0	.	.
BRWD1	54014	hgsc.bcm.edu	37	21	40619671	40619671	+	Missense_Mutation	SNP	G	G	T	rs201010892	alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	BRWD1	NM_018963	exon21	c.C2437A	p.R813S	.	.	89	4	88	0	G|0.999;A|0.001	94
C22orf26	55267	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	22	46449729	46449729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C22orf26	NM_018280	exon1	c.C245A	p.P82Q	.	.	15	5	12	0	.	90
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73824849	73824849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C2CD3	NM_015531	exon11	c.G1819T	p.A607S	.	.	51	5	47	0	.	75
C4orf17	84103	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	100463066	100463066	+	Splice_Site	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	C4orf17	NM_032149	exon9	c.881-1G>C	.	.	.	176	10	232	0	.	90
CACNA1A	773	bcgsc.ca;mdanderson.org	37	19	13325091	13325091	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CACNA1A	NM_001127221	exon40	c.C5899G	p.R1967G	.	.	17	4	21	0	.	67
CAMSAP3	57662	ucsc.edu;bcgsc.ca	37	19	7673101	7673101	+	Silent	SNP	G	G	A	rs199927493	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001080429	exon7	c.G792A	p.A264A	.	.	37	4	53	0	G|0.991;A|0.009	.
CAPN11	11131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44147887	44147887	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CAPN11	NM_007058	exon14	c.C1627A	p.H543N	.	.	31	8	37	0	.	136
CBLB	868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	105586253	105586253	+	Splice_Site	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CBLB	NM_170662	exon3	c.168+1G>-	.	.	.	56	19	68	0	.	849
CD93	22918	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	23066708	23066708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CD93	NM_012072	exon1	c.C122A	p.S41X	.	.	13	4	33	0	.	153
CEP85L	387119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	118887408	118887408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001178035	exon4	c.G313T	p.V105L	.	.	46	13	61	0	.	.
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189907465	189907465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COL5A2	NM_000393	exon49	c.C3506G	p.P1169R	.	.	42	17	46	0	.	92
COQ6	51004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	74428466	74428466	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	COQ6	NM_182476	exon11	c.G1237T	p.E413X	.	.	40	13	52	0	.	90
CPLX2	10814	hgsc.bcm.edu	37	5	175306952	175306952	+	Silent	SNP	G	G	T	rs150632571	alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CPLX2	NM_006650	exon5	c.G309T	p.A103A	.	.	119	5	155	0	G|1.000;A|0.000	227
CTDSPL2	51496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44816346	44816346	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CTDSPL2	NM_016396	exon13	c.T1375C	p.L459L	.	.	49	24	46	0	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004C	p.K335T	.	.	111	24	94	0	.	24361
CTNND2	1501	ucsc.edu;bcgsc.ca	37	5	11117583	11117583	+	Silent	SNP	C	C	T	rs2285975	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CTNND2	NM_001332	exon13	c.G2256A	p.G752G	.	.	37	4	49	0	C|0.857;T|0.143	293
CYP26B1	56603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	72374800	72374800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CYP26B1	NM_019885	exon1	c.G164T	p.G55V	.	.	49	11	63	0	.	92
CYSLTR1	10800	bcgsc.ca	37	X	77528317	77528317	+	Silent	SNP	G	G	A	rs320995	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	CYSLTR1	NM_006639	exon3	c.C927T	p.F309F	.	.	157	6	168	0	G|0.287;A|0.713	131
ECM1	1893	bcgsc.ca	37	1	150483355	150483355	+	Missense_Mutation	SNP	C	C	T	rs3737240	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ECM1	NM_001202858	exon6	c.C470T	p.T157M	.	.	91	5	71	0	C|0.728;T|0.272	92
ECM1	1893	bcgsc.ca	37	1	150484987	150484987	+	Missense_Mutation	SNP	G	G	A	rs13294	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ECM1	NM_001202858	exon8	c.G1324A	p.G442S	.	.	110	6	83	0	A|0.317;C|0.005	92
EEF1A1	1915	broad.mit.edu	37	6	74228852	74228852	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EEF1A1	NM_001402	exon4	c.A424G	p.T142A	.	.	4	3	19	0	.	226
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42964016	42964016	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EFTUD2	NM_004247	exon3	c.G208A	p.E70K	.	.	50	12	58	0	.	91
EIF4E	1977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	99850252	99850252	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4E	NM_001130679	exon1	c.C12T	p.V4V	.	.	46	12	54	0	.	1270
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10824602	10824602	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EIF4G2	NM_001042559	exon11	c.A971G	p.N324S	.	.	54	15	58	0	.	91
ENTPD1	953	hgsc.bcm.edu;bcgsc.ca	37	10	97624496	97624496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ENTPD1	NM_001164178	exon9	c.G1240T	p.A414S	.	.	63	4	66	0	.	93
EPHA2	1969	broad.mit.edu;mdanderson.org	37	1	16464616	16464616	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EPHA2	NM_004431	exon5	c.G1044A	p.W348X	.	.	15	4	20	0	.	1419
EWSR1	2130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29664336	29664336	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EWSR1	NM_013986	exon1	c.C11G	p.T4R	.	.	43	11	56	0	.	3375
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65149117	65149117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	EYS	NM_001142800	exon27	c.C5773A	p.Q1925K	.	.	90	16	146	0	.	660
FAM182A	284800	broad.mit.edu	37	20	26061817	26061817	+	RNA	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	71	5	57	1	.	.
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45960824	45960824	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	FBLN1	NM_006485	exon15	c.G1758T	p.R586S	.	.	41	15	55	0	.	515
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151821124	151821124	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GABRQ	NM_018558	exon9	c.G1279C	p.A427P	.	.	84	44	64	0	.	133
GAN	8139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81390417	81390417	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GAN	NM_022041	exon4	c.C661T	p.L221L	.	.	149	46	132	0	.	92
GGN	199720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38877684	38877684	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GGN	NM_152657	exon3	c.T218C	p.L73P	.	.	44	9	64	0	.	90
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205339	48205339	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GLTSCR1	NM_015711	exon15	c.G4350T	p.E1450D	.	.	12	9	4	0	.	48
GON4L	54856	ucsc.edu;bcgsc.ca	37	1	155733257	155733257	+	Silent	SNP	T	T	C	rs607834	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GON4L	NM_001037533	exon22	c.A4572G	p.P1524P	.	.	33	8	31	2	T|0.054;C|0.946	93
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148725167	148725167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	GRPEL2	NM_152407	exon1	c.C65G	p.A22G	.	.	91	18	133	0	.	91
HCAR2	338442	broad.mit.edu	37	12	123187407	123187407	+	Missense_Mutation	SNP	G	G	A	rs151172149	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HCAR2	NM_177551	exon1	c.C424T	p.R142W	.	.	51	3	64	1	G|1.000;A|0.000	91
HERC2	8924	broad.mit.edu	37	15	28459392	28459392	+	Missense_Mutation	SNP	G	G	A	rs138059246	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HERC2	NM_004667	exon41	c.C6385T	p.R2129C	.	.	67	5	70	1	G|0.999;A|0.001	234
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	28419597	28419597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HERC2	NM_004667	exon65	c.T10001G	p.V3334G	.	.	211	67	211	0	.	234
HIGD1A	25994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42826810	42826810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HIGD1A	NM_001099668	exon4	c.A277G	p.M93V	.	.	538	108	648	0	.	226
HIST1H2BK	85236	broad.mit.edu	37	6	27114569	27114569	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	HIST1H2BK	NM_080593	exon1	c.A9G	p.E3E	.	.	65	6	64	0	.	68
IGSF3	3321	ucsc.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T	rs76151115	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	IGSF3	NM_001542	exon8	c.G2039A	p.R680Q	.	.	23	5	26	0	C|0.990;T|0.010	92
IL18BP	10068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71711533	71711533	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	IL18BP	NM_001145057	exon3	c.C165T	p.P55P	.	.	20	6	26	0	.	90
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59947136	59947136	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	INTS2	NM_020748	exon21	c.A3016G	p.I1006V	.	.	70	22	71	0	.	206
KBTBD12	166348	bcgsc.ca	37	3	127641968	127641968	+	Missense_Mutation	SNP	C	C	A	rs4141499	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KBTBD12	NM_207335	exon1	c.C64A	p.Q22K	.	.	143	6	138	1	C|0.339;A|0.661	23
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73843259	73843259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KCNQ5	NM_001160133	exon11	c.G1420A	p.E474K	.	.	48	12	92	0	.	158
KIAA0232	9778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6863165	6863165	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA0232	NM_014743	exon7	c.C1056T	p.S352S	.	.	88	21	107	0	.	92
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	24508649	24508649	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KIAA1217	NM_019590	exon2	c.A165G	p.S55S	.	.	66	22	80	0	.	98
KRT19P2	160313	broad.mit.edu;bcgsc.ca	37	12	95228772	95228772	+	RNA	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	9	4	21	0	.	.
KRT78	196374	broad.mit.edu;mdanderson.org	37	12	53242690	53242690	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRT78	NM_173352	exon1	c.C25T	p.Q9X	.	.	19	8	22	0	.	188
KRT81	3887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52681386	52681386	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRT81	NM_002281	exon6	c.G1020T	p.K340N	.	.	50	18	57	0	.	90
KRTAP5-5	439915	bcgsc.ca	37	11	1651199	1651199	+	Silent	SNP	A	A	G	rs144216147		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	KRTAP5-5	NM_001001480	exon1	c.A129G	p.G43G	.	.	67	19	91	8	.	23
LAMC1	3915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183101589	183101589	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LAMC1	NM_002293	exon21	c.G3621A	p.T1207T	.	.	101	37	103	1	.	252
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133942439	133942439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	LAMC3,NS,carcinoma,0	LAMC3	NM_006059	exon14	c.G2440A	p.G814R	.	.	26	10	42	0	.	93
LDHAL6A	160287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18499168	18499168	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LDHAL6A	NM_144972	exon6	c.G712T	p.G238C	.	.	75	16	105	0	.	90
LOC150776	0	broad.mit.edu	37	2	132256505	132256505	+	RNA	SNP	A	A	C	rs3817572	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	210	5	207	2	A|0.497;C|0.503	.
LOC284100	0	broad.mit.edu;bcgsc.ca	37	17	36243630	36243630	+	RNA	SNP	C	C	A	rs1964698	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LOC284100	.	.	.	.	.	.	493	14	544	0	C|0.462;A|0.538	136
LOC96610	0	ucsc.edu	37	22	22661378	22661378	+	RNA	SNP	T	T	C	rs76530335		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	42	14	32	3	C|1.000;|0.000	.
LRRC37B	114659	broad.mit.edu;ucsc.edu	37	17	30351740	30351740	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LRRC37B	NM_052888	exon2	c.G1690T	p.G564X	.	.	446	137	610	2	.	92
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7960521	7960521	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	LRRC8E	NM_001268284	exon3	c.G33A	p.T11T	.	.	56	21	109	0	.	92
MAML2	84441	ucsc.edu	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAML2	NM_032427	exon2	c.G1812A	p.Q604Q	.	.	47	7	61	1	C|0.500;T|0.500	850
MAN2B1	4125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12757461	12757461	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAN2B1	NM_000528	exon24	c.A3009G	p.S1003S	.	.	62	13	72	0	.	94
MAT1A	4143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82036284	82036284	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MAT1A	NM_000429	exon6	c.T616G	p.S206A	.	.	16	8	19	0	.	90
MS4A7	58475	bcgsc.ca	37	11	60152584	60152584	+	Silent	SNP	G	G	A	rs950802	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MS4A7	NM_021201	exon3	c.G171A	p.L57L	.	.	91	5	96	0	G|0.609;A|0.391	91
MUC2	4583	bcgsc.ca	37	11	1092636	1092636	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MUC2	NM_002457	exon30	c.C4455T	p.S1485S	.	.	139	14	132	0	.	90
MUC2	4583	bcgsc.ca	37	11	1092647	1092647	+	Missense_Mutation	SNP	C	C	T	rs201749895		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MUC2	NM_002457	exon30	c.C4466T	p.T1489I	.	.	164	14	143	1	.	90
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MUC2	NM_002457	exon30	c.G5163T	p.P1721P	.	.	61	5	60	0	.	90
MUC2	4583	broad.mit.edu;bcgsc.ca	37	11	1092920	1092920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MUC2	NM_002457	exon30	c.C4739A	p.T1580N	.	.	50	5	68	2	.	90
MUC4	4585	broad.mit.edu	37	3	195509955	195509955	+	Silent	SNP	A	A	C	rs71635078		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MUC4	NM_018406	exon2	c.T8496G	p.S2832S	.	.	28	2	24	0	C|1.000;|0.000	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3248697	3248697	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	MXRA5	NM_015419	exon3	c.C306T	p.L102L	.	.	35	17	55	0	.	136
NAGPA	51172	hgsc.bcm.edu	37	16	5083483	5083483	+	Silent	SNP	T	T	C	rs2972272	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NAGPA	NM_016256	exon2	c.A333G	p.G111G	.	.	5	5	0	0	T|0.273;C|0.727	90
NBPF9	400818	broad.mit.edu	37	1	144813815	144813815	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	15	6	17	0	.	.
NCKAP1L	3071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54910687	54910687	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NCKAP1L	NM_005337	exon11	c.T1006C	p.F336L	.	.	78	19	97	0	.	93
NEFH	4744	hgsc.bcm.edu	37	22	29885589	29885590	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NEFH	NM_021076	exon4	c.1960_1961insCCCCTGAGAAGGCCAAGT	p.S654delinsSPEKAKS	.	.	182	104	192	0	.	90
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	21592455	21592455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NELL1	NM_006157	exon18	c.G2126T	p.W709L	.	.	69	12	82	0	.	155
NFU1	27247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69650764	69650764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NFU1	NM_001002755	exon3	c.G252T	p.R84S	.	.	90	25	98	0	.	90
NOL6	65083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	33465828	33465828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOL6	NM_022917	exon19	c.G2432A	p.S811N	.	.	41	12	45	0	.	92
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139405212	139405212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NOTCH1	NM_017617	exon17	c.G2633A	p.C878Y	.	.	38	17	73	0	.	5459
NPTX2	4885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98257930	98257930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NPTX2	NM_002523	exon5	c.C1285T	p.L429F	.	.	50	12	64	0	.	515
NSRP1	84081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	28506153	28506156	+	Frame_Shift_Del	DEL	AAGG	AAGG	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	AAGG	AAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	NSRP1	NM_032141	exon5	c.346_349del	p.116_117del	.	.	256	58	290	0	.	91
OR51I1	390063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5462429	5462429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OR51I1	NM_001005288	exon1	c.A316G	p.I106V	.	.	70	20	75	0	.	69
OR5AN1	390195	bcgsc.ca	37	11	59132798	59132798	+	Missense_Mutation	SNP	G	G	C	rs7941190	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OR5AN1	NM_001004729	exon1	c.G867C	p.L289F	.	.	46	4	39	0	G|0.358;C|0.642	69
OTUD4	54726	hgsc.bcm.edu	37	4	146059006	146059006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OTUD4	NM_001102653	exon21	c.C2726T	p.T909I	.	.	79	4	115	0	.	565
OXER1	165140	broad.mit.edu	37	2	42990966	42990966	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	OXER1	NM_148962	exon1	c.C354T	p.C118C	.	.	61	3	53	0	.	500
PADI1	29943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17565194	17565194	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PADI1	NM_013358	exon13	c.C1542T	p.A514A	.	.	55	18	120	0	.	68
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134071449	134071449	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PCDH10	NM_032961	exon1	c.G154A	p.G52R	.	.	79	19	94	0	.	92
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140214367	140214367	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PCDHA7	NM_031852	exon1	c.399delC	p.F133fs	.	.	328	94	405	0	.	94
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20766493	20766493	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PDE3A	NM_000921	exon3	c.C1128A	p.A376A	.	.	71	22	73	0	.	94
PIEZO1	9780	broad.mit.edu	37	16	88783449	88783449	+	Silent	SNP	C	C	G	rs8057031	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001142864	exon45	c.G6642C	p.L2214L	.	.	29	3	32	0	C|0.319;G|0.681	.
PITPNM2	57605	hgsc.bcm.edu	37	12	123470586	123470586	+	Silent	SNP	C	C	T	rs12828755	bycluster;byfrequency;by1000genomes	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PITPNM2	NM_020845	exon25	c.G4038A	p.A1346A	.	.	10	7	0	0	C|0.870;G|0.000;T|0.130	228
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	9449315	9449315	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PLCB4	NM_001172646	exon35	c.G3346T	p.E1116X	.	.	49	18	57	0	.	274
PNLDC1	154197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160237044	160237044	+	Missense_Mutation	SNP	G	G	T	rs137878641	byfrequency;alternate_allele	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PNLDC1	NM_173516	exon13	c.G1006T	p.A336S	.	.	41	11	47	0	G|0.999;A|0.001	90
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	38162065	38162065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	POSTN	NM_006475	exon5	c.G500A	p.S167N	.	.	317	102	356	0	.	516
PPIG	9360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170460700	170460700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PPIG	NM_004792	exon4	c.G65T	p.G22V	.	.	70	26	89	0	.	92
PRAMEF4	400735	ucsc.edu	37	1	12939904	12939904	+	Missense_Mutation	SNP	A	A	C	rs77146569	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRAMEF4	NM_001009611	exon4	c.T898G	p.F300V	.	.	18	7	21	4	A|0.500;C|0.500	45
PRDM9	56979	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	23526529	23526529	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRDM9	NM_020227	exon11	c.A1332G	p.P444P	.	.	87	25	115	1	.	139
PRKCQ	5588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6498670	6498670	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRKCQ	NM_006257	exon15	c.C1613A	p.T538N	.	.	72	16	50	0	.	1380
PRMT10	90826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	148579096	148579097	+	Nonsense_Mutation	INS	-	-	AGGCTTTTTAGTTGCA	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRMT10	NM_138364	exon8	c.1177_1178insTGCAACTAAAAAGCCT	p.D393_K394delinsCNX	.	.	119	21	102	0	.	91
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79320343	79320343	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PRUNE2	NM_015225	exon8	c.G6847A	p.D2283N	.	.	90	16	93	0	.	157
PSMA1	5682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	14535383	14535383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PSMA1	NM_148976	exon7	c.C412G	p.L138V	.	.	61	17	82	0	.	92
PTPN2	5771	broad.mit.edu	37	18	12836838	12836838	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	PTPN2	NM_001207013	exon3	c.C213A	p.A71A	.	.	75	4	63	0	.	652
RAG1	5896	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596559	36596559	+	Missense_Mutation	SNP	G	G	T	rs138101978		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	RAG1	NM_000448	exon2	c.G1705T	p.A569S	.	.	62	18	80	1	G|1.000;T|0.000	230
RPL23P8	222901	ucsc.edu	37	7	20867373	20867373	+	RNA	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	.	.	.	.	.	.	24	7	38	0	.	.
SCN1B	6324	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35524522	35524522	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SCN1B	NM_001037	exon3	c.C327T	p.T109T	.	.	65	26	73	1	.	91
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	166229735	166229735	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SCN2A	NM_001040143	exon20	c.G3850C	p.V1284L	.	.	96	21	102	0	.	142
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47162395	47162395	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SETD2	NM_014159	exon3	c.C3731T	p.P1244L	.	.	71	7	79	0	.	1273
SETDB2	83852	bcgsc.ca	37	13	50050620	50050620	+	Missense_Mutation	SNP	A	A	G	rs7998427	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SETDB2	NM_031915	exon7	c.A350G	p.E117G	.	.	135	5	121	0	A|0.272;G|0.728	91
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29891311	29891311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SEZ6L2	NM_001243332	exon9	c.C1447T	p.P483S	.	.	50	14	61	0	.	92
SI	6476	bcgsc.ca	37	3	164764719	164764719	+	Silent	SNP	C	C	A	rs9838509	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SI	NM_001041	exon16	c.G1797T	p.A599A	.	.	199	7	180	0	C|0.416;A|0.584	104
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51630358	51630358	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SIGLEC9	NM_001198558	exon4	c.G820A	p.V274I	.	.	40	8	52	0	.	91
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19459199	19459199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SLC47A1	NM_018242	exon9	c.A830G	p.Y277C	.	.	22	7	25	0	.	90
SNX29	92017	broad.mit.edu	37	16	12136797	12136797	+	Silent	SNP	C	C	T	rs148440564	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SNX29	NM_032167	exon5	c.C291T	p.H97H	.	.	46	3	53	0	C|0.999;T|0.001	23
SOX2	6657	ucsc.edu;mdanderson.org	37	3	181431520	181431520	+	RNA	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SOX2	.	.	.	.	.	.	198	61	251	0	.	650
SPANXC	64663	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	140335728	140335728	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SPANXC	NM_022661	exon2	c.C216A	p.A72A	.	.	308	165	219	0	.	62
SPANXE	171489	broad.mit.edu;bcgsc.ca	37	X	140785700	140785700	+	Silent	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_145665	exon2	c.C216A	p.A72A	.	.	552	95	397	0	.	.
SPRR1B	6699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153004986	153004986	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	SPRR1B	NM_003125	exon2	c.G165A	p.E55E	.	.	66	9	86	0	.	69
TENM3	55714	broad.mit.edu	37	4	183721276	183721276	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001080477	exon27	c.G7872A	p.A2624A	.	.	22	3	11	0	.	.
TFAP2E	339488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36060160	36060160	+	Silent	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TFAP2E	NM_178548	exon7	c.C1212T	p.A404A	.	.	44	10	73	0	.	90
TFG	10342	broad.mit.edu;mdanderson.org	37	3	100467366	100467366	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TFG	NM_006070	exon8	c.T1194G	p.G398G	.	.	23	6	32	0	.	861
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63031555	63031555	+	Silent	SNP	A	A	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TLN2	NM_015059	exon28	c.A3696G	p.P1232P	.	.	37	7	37	0	.	573
TMPRSS13	84000	ucsc.edu;bcgsc.ca	37	11	117782522	117782522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TMPRSS13	NM_001206790	exon6	c.T863A	p.I288N	.	.	31	4	51	0	.	91
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1499804	1499804	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	TPO,NS,carcinoma,0	TPO	NM_001206744	exon12	c.C2050T	p.R684C	.	.	36	12	32	0	.	332
TSTA3	7264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144695934	144695934	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TSTA3	NM_003313	exon8	c.C717T	p.P239P	.	.	122	43	70	0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179439946	179439946	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	TTN	NM_001267550	exon326	c.T70913G	p.I23638S	.	.	53	15	77	0	.	636
TXLNB	167838	bcgsc.ca	37	6	139563914	139563914	+	Missense_Mutation	SNP	C	C	G	rs9495391	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	TXLNB,colon,carcinoma,+2	TXLNB	NM_153235	exon10	c.G1804C	p.A602P	.	.	47	4	70	0	C|0.511;G|0.489	91
UBA1	7317	ucsc.edu	37	X	47060333	47060333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	UBA1	NM_153280	exon6	c.G521T	p.R174L	.	.	44	4	40	0	.	227
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	62226473	62226473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS13C	NM_020821	exon49	c.T5813G	p.F1938C	.	.	236	10	280	0	.	92
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151158055	151158055	+	Silent	SNP	C	C	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VPS72	NM_001271087	exon3	c.G312T	p.P104P	.	.	139	36	97	0	.	154
VSIG4	11326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65253415	65253415	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	VSIG4	NM_001100431	exon2	c.A313G	p.M105V	.	.	62	27	52	0	.	130
WNT2	7472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	116960721	116960721	+	Silent	SNP	G	G	A	rs139486726		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	WNT2	NM_003391	exon2	c.C210T	p.A70A	.	.	50	13	36	0	G|1.000;A|0.000	1011
XKR7	343702	mdanderson.org	37	20	30585204	30585204	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	XKR7	NM_001011718	exon3	c.C1684T	p.Q562X	.	.	8	2	8	0	.	137
ZCCHC2	54877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60241963	60241963	+	Silent	SNP	T	T	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZCCHC2	NM_017742	exon13	c.T2649G	p.P883P	.	.	102	25	114	0	.	432
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44515439	44515440	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF230	NM_006300	exon5	c.1248_1249insA	p.R416fs	.	.	113	24	120	0	.	90
ZNF362	149076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33760792	33760792	+	Silent	SNP	C	C	G	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF362	NM_152493	exon8	c.C1032G	p.P344P	.	.	171	40	226	1	.	68
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	88494198	88494198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001127464	exon1	c.G320T	p.R107M	.	.	36	9	41	0	.	.
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123979216	123979216	+	Silent	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	ZNF608,NS,carcinoma,-1	ZNF608	NM_020747	exon6	c.C4284T	p.S1428S	.	.	110	27	119	0	.	229
ZNF681	148213	broad.mit.edu	37	19	23926530	23926530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_138286	exon4	c.C1822T	p.H608Y	.	.	24	3	32	0	.	.
ZNF746	155061	broad.mit.edu	37	7	149189988	149189988	+	Missense_Mutation	SNP	C	C	T	rs61732237	byfrequency	TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF746	NM_001163474	exon4	c.G482A	p.G161D	.	.	63	4	60	0	C|0.039;T|0.961	155
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	185800549	185800549	+	Silent	SNP	T	T	C	novel		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	ZNF804A	NM_194250	exon4	c.T426C	p.V142V	.	.	66	19	70	0	.	163
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	125	39	106	1	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-K7-A6G5-01A-11D-A30V-10	TCGA-K7-A6G5-10A-01D-A30V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1ba1022c-bdf7-464b-a527-f69dd5bac5be	9878f24b-c9b2-4b3b-9cf2-d4ad1132ee86	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	113	27	89	1	.	.
