Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAR2	25980	broad.mit.edu	37	20	34828175	34828175	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001271874	exon2	c.A385G	p.T129A	.	.	117	4	119	0	.	.
ABCB11	8647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	169847362	169847362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCB11	NM_003742	exon9	c.C857T	p.S286L	.	.	47	22	64	0	.	139
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16139804	16139804	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ABCC1	NM_004996	exon9	c.C1152T	p.Y384Y	.	.	101	12	86	0	.	94
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24157559	24157559	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ADAM28	NM_014265	exon2	c.A119G	p.H40R	.	.	23	17	28	0	.	228
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21229489	21229489	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	APOB	NM_000384	exon26	c.C10251A	p.T3417T	.	.	58	14	61	0	.	175
C6orf120	387263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170102922	170102922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	C6orf120	NM_001029863	exon1	c.T367A	p.S123T	.	.	35	14	44	0	.	90
CACNA1B	774	broad.mit.edu	37	9	140941473	140941473	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CACNA1B	NM_001243812	exon22	c.G3531A	p.S1177S	.	.	71	4	45	0	.	138
CADM1	23705	ucsc.edu	37	11	115049405	115049405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CADM1	NM_014333	exon9	c.G1169A	p.C390Y	.	.	37	4	35	0	.	92
CAPZA1	829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113212621	113212621	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CAPZA1	NM_006135	exon10	c.T728G	p.I243S	.	.	125	62	142	0	.	514
CATSPER2	117155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43924421	43924421	+	Missense_Mutation	SNP	G	G	T	rs148790135	alternate_allele	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CATSPER2	NM_172095	exon12	c.C1537A	p.R513S	.	.	59	35	80	0	G|1.000;A|0.000	91
CDH18	1016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	19747162	19747162	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CDH18	NM_001167667	exon4	c.C412A	p.P138T	.	.	106	54	105	0	.	159
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61654307	61654307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CHD7	NM_017780	exon2	c.C316T	p.H106Y	.	.	119	29	82	0	.	141
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99012595	99012595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CNGA3	NM_001298	exon8	c.A962G	p.Y321C	.	.	82	50	105	0	.	96
CPAMD8	27151	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17104379	17104379	+	Silent	SNP	G	G	A	rs75991134	byfrequency	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CPAMD8	NM_015692	exon12	c.C1254T	p.P418P	.	.	52	27	66	0	G|0.966;A|0.034	141
CROCCP3	114819	broad.mit.edu	37	1	16812151	16812151	+	RNA	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	.	.	.	.	.	.	55	6	76	1	.	.
CSTF2	1478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100086583	100086583	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	CSTF2	NM_001325	exon9	c.A969G	p.G323G	.	.	72	35	68	0	.	131
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6472968	6472968	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DENND1C	NM_024898	exon15	c.G1090C	p.A364P	.	.	35	6	29	0	.	67
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	32486815	32486815	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DMD	NM_004006	exon23	c.T2962C	p.S988P	.	.	140	115	124	0	.	265
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	71	0	64	0	.	90
DUS4L	11062	broad.mit.edu	37	7	107207563	107207563	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	DUS4L	NM_001270419	exon3	c.A48G	p.K16K	.	.	95	5	83	1	.	90
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139134461	139134461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ECT2L	NM_001195037	exon2	c.A50T	p.K17M	.	.	91	16	65	0	.	22
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	EP400	NM_015409	exon47	c.G8175A	p.Q2725Q	.	.	94	4	71	0	.	520
FAM127A	8933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134166686	134166686	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FAM127A	NM_001078171	exon1	c.C273A	p.L91L	.	.	129	50	136	0	.	130
FBF1	85302	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73914085	73914085	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FBF1	NM_001080542	exon21	c.C2268T	p.R756R	.	.	37	12	52	1	.	205
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127744387	127744387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FBN2	NM_001999	exon8	c.C1058T	p.T353I	.	.	271	107	221	0	.	146
FIG4	9896	hgsc.bcm.edu	37	6	110098138	110098138	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FIG4	NM_014845	exon16	c.A1764G	p.Q588Q	.	.	98	4	98	0	.	69
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	RNA	SNP	C	C	A	rs145033899		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FRG1B	.	.	.	.	.	.	141	7	95	2	.	22
FRMPD2	143162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49447719	49447719	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	FRMPD2	NM_001018071	exon7	c.G717T	p.T239T	.	.	45	21	49	0	.	153
FUNDC2P2	388965	broad.mit.edu;ucsc.edu	37	2	84518479	84518479	+	RNA	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	.	.	.	.	.	.	12	8	13	0	.	.
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46066470	46066470	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GABRG1	NM_173536	exon5	c.G613C	p.E205Q	.	.	319	90	344	0	.	92
GBP5	115362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	89726418	89726419	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GBP5	NM_052942	exon12	c.1729_1730del	p.577_577del	.	.	50	15	52	0	.	91
GJD4	219770	broad.mit.edu	37	10	35897239	35897239	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GJD4	NM_153368	exon2	c.G798A	p.P266P	.	.	18	3	17	0	.	155
GNPNAT1	64841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	53245074	53245074	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GNPNAT1	NM_198066	exon6	c.T510C	p.Y170Y	.	.	179	10	167	0	.	90
GPR144	347088	ucsc.edu	37	9	127231522	127231522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001161808	exon15	c.C2330T	p.A777V	.	.	41	4	28	0	.	.
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154055628	154055628	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GPR149	NM_001038705	exon4	c.A2056G	p.N686D	.	.	113	60	91	0	.	96
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11738866	11738866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GREB1	NM_014668	exon15	c.A2213G	p.Y738C	.	.	67	17	70	0	.	91
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141497429	141497429	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GRK7	NM_139209	exon1	c.C303A	p.T101T	.	.	68	20	94	0	.	522
GSN	2934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	124065340	124065340	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	GSN	NM_000177	exon3	c.C501G	p.Y167X	.	.	38	10	27	0	.	154
HLA-A	3105	broad.mit.edu	37	6	29910607	29910607	+	Silent	SNP	G	G	C	rs72555397		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	HLA-A	NM_001242758	exon2	c.G147C	p.V49V	.	.	99	8	91	1	.	92
INTS12	57117	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106603913	106603913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	INTS12	NM_020395	exon8	c.G1366T	p.A456S	.	.	108	58	114	1	.	68
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55946235	55946235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KDR	NM_002253	exon30	c.A3944G	p.D1315G	.	.	91	44	129	0	.	2298
KIAA1731	85459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93432956	93432959	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	AAAC	AAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KIAA1731	NM_033395	exon15	c.4878_4881del	p.1626_1627del	.	.	51	12	76	0	.	22
KRTAP9-2	83899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39383271	39383271	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	KRTAP9-2	NM_031961	exon1	c.A365G	p.Y122C	.	.	131	70	140	0	.	23
LCE1F	353137	hgsc.bcm.edu	37	1	152749040	152749040	+	Missense_Mutation	SNP	G	G	T	rs200171226	byfrequency	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	LCE1F	NM_178354	exon1	c.G193T	p.G65C	.	.	212	13	101	0	G|0.965;T|0.034	68
LCN1	3933	broad.mit.edu	37	9	138413373	138413373	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	LCN1	NM_001252617	exon1	c.T30C	p.L10L	.	.	56	7	52	1	.	90
LMOD2	442721	broad.mit.edu	37	7	123302900	123302900	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	LMOD2	NM_207163	exon2	c.A1260C	p.T420T	.	.	67	9	57	4	.	68
LOC100653515	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76887017	76887017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001243540	exon3	c.G1569T	p.M523I	.	.	40	22	49	0	.	.
MDFIC	29969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	114619638	114619638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MDFIC	NM_199072	exon4	c.G622C	p.G208R	.	.	156	19	150	0	.	91
MLKL	197259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	74708937	74708937	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MLKL	NM_152649	exon10	c.T1302G	p.G434G	.	.	128	53	92	0	.	561
MNT	4335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2290484	2290484	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MNT	NM_020310	exon6	c.C1460A	p.P487H	.	.	32	11	37	0	.	227
MORC3	23515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	21	37736428	37736428	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MORC3	NM_015358	exon14	c.C1490A	p.S497X	.	.	84	32	82	0	.	92
MRPS16	51021	ucsc.edu	37	10	75008873	75008873	+	RNA	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MRPS16	.	.	.	.	.	.	53	1	45	0	.	90
MSMO1	6307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	166259057	166259058	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_006745	exon3	c.372_373insA	p.N124fs	.	.	68	31	63	0	.	.
MUC4	4585	broad.mit.edu	37	3	195509939	195509939	+	Missense_Mutation	SNP	G	G	T	rs202039836		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MUC4	NM_018406	exon2	c.C8512A	p.P2838T	.	.	74	6	94	1	.	90
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108117574	108117574	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	MYH15	NM_014981	exon36	c.G5103A	p.R1701R	.	.	43	14	61	0	.	73
NCDN	23154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36024726	36024726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NCDN	NM_001014839	exon3	c.A52T	p.M18L	.	.	138	68	166	0	.	155
NCKAP5L	57701	ucsc.edu;bcgsc.ca	37	12	50190423	50190423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NCKAP5L	NM_001037806	exon8	c.G1220A	p.S407N	.	.	20	4	20	0	.	68
NFKB1	4790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103518690	103518690	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NFKB1	NM_003998	exon15	c.A1509G	p.L503L	.	.	23	8	33	0	.	912
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32163286	32163286	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOTCH4	NM_004557	exon30	c.A5940G	p.S1980S	.	.	61	7	84	0	.	1321
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069106	89069106	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NOX4	NM_016931	exon17	c.T1523G	p.I508S	.	.	219	116	196	0	.	515
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44555486	44555486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	NPC1L1	NM_013389	exon19	c.T3793A	p.F1265I	.	.	75	55	90	0	.	94
PAPOLG	64895	broad.mit.edu;bcgsc.ca	37	2	61014136	61014136	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PAPOLG	NM_022894	exon14	c.T1221C	p.N407N	.	.	99	7	115	0	.	69
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T	rs2573509		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PARG	NM_003631	exon8	c.G1750A	p.A584T	.	.	160	5	219	1	.	948
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	82451998	82451998	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PCLO	NM_014510	exon20	c.G14604T	p.Q4868H	.	.	32	20	24	0	.	29
PDE8A	5151	broad.mit.edu	37	15	85632603	85632603	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PDE8A	NM_173454	exon7	c.A670C	p.S224R	.	.	89	4	112	0	.	94
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	39905761	39905761	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_001100399	exon12	c.A1284G	p.K428K	.	.	56	32	48	0	.	.
PER2	8864	ucsc.edu;bcgsc.ca	37	2	239161897	239161897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PER2	NM_022817	exon19	c.G2767A	p.A923T	.	.	51	5	57	0	.	154
PI4K2A	55361	bcgsc.ca	37	10	99433490	99433490	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PI4K2A	NM_018425	exon9	c.A1431G	p.S477S	.	.	53	5	74	0	.	226
PLA2G2E	30814	ucsc.edu	37	1	20246905	20246905	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PLA2G2E	NM_014589	exon4	c.T324C	p.C108C	.	.	36	4	37	0	.	90
PLD2	5338	ucsc.edu	37	17	4722443	4722443	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PLD2	NM_001243108	exon22	c.G2238A	p.G746G	.	.	46	4	73	0	.	291
PLOD1	5351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12023642	12023642	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PLOD1	NM_000302	exon11	c.A1151C	p.D384A	.	.	49	12	61	0	.	155
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	131193749	131193751	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1060_1062del	p.354_354del	.	.	148	19	165	0	.	136
PODXL	5420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	131193753	131193756	+	Frame_Shift_Del	DEL	CTCT	CTCT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CTCT	CTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PODXL	NM_001018111	exon5	c.1055_1058del	p.352_353del	.	.	146	0	166	0	.	136
POLE3	54107	broad.mit.edu	37	9	116171251	116171251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	POLE3	NM_017443	exon5	c.A284G	p.E95G	.	.	86	7	61	4	.	227
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62659867	62659867	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PRPF6	NM_012469	exon18	c.G2376A	p.L792L	.	.	40	14	44	0	.	70
PSCA	8000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	143763524	143763524	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_005672	exon3	c.C319T	p.L107L	.	.	40	8	12	0	.	.
PTBP1	5725	broad.mit.edu;bcgsc.ca	37	19	808555	808555	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PTBP1	NM_002819	exon13	c.A1256G	p.H419R	.	.	91	6	51	1	.	227
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	8143692	8143692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	PTPRM	NM_001105244	exon14	c.C2215T	p.H739Y	.	.	81	22	68	0	.	228
RALGPS1	9649	ucsc.edu	37	9	129974422	129974422	+	Silent	SNP	G	G	A	rs199817962		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RALGPS1	NM_014636	exon15	c.G1260A	p.P420P	.	.	44	4	28	0	G|0.999;A|0.000	227
RFX7	64864	ucsc.edu;bcgsc.ca;mdanderson.org	37	15	56387352	56387352	+	Silent	SNP	T	T	C	rs117528481	byfrequency	TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RFX7	NM_022841	exon9	c.A2574G	p.Q858Q	.	.	42	24	68	0	T|0.995;C|0.005	90
RPTN	126638	broad.mit.edu	37	1	152128054	152128054	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RPTN	NM_001122965	exon3	c.A1521G	p.Q507Q	.	.	168	5	95	0	.	68
RREB1	6239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7231437	7231437	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RREB1	NM_001003700	exon10	c.C3105A	p.L1035L	.	.	47	12	41	0	.	144
RSPH10B	222967	broad.mit.edu;mdanderson.org	37	7	6797425	6797425	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RSPH10B	NM_173565	exon3	c.G117A	p.E39E	.	.	226	26	196	0	.	23
RUVBL1	8607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127831762	127831762	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RUVBL1	NM_003707	exon3	c.G330A	p.E110E	.	.	59	11	120	0	.	227
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237670087	237670087	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	RYR2	NM_001035	exon23	c.A2691G	p.K897K	.	.	86	25	40	0	.	158
SEC63	11231	broad.mit.edu	37	6	108214765	108214765	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SEC63	NM_007214	exon16	c.T1595A	p.L532X	.	.	47	5	58	1	.	227
SGK1	6446	bcgsc.ca	37	6	134495144	134495146	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SGK1	NM_001143676	exon5	c.510_512del	p.170_171del	.	.	48	5	67	0	.	981
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18289660	18289660	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SLC39A12	NM_001145195	exon11	c.T1665C	p.D555D	.	.	62	32	78	0	.	154
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228882606	228882606	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SPHKAP	NM_030623	exon7	c.C2964T	p.S988S	.	.	48	14	77	0	.	167
SSR4	6748	ucsc.edu	37	X	153060132	153060132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	SSR4	NM_001204526	exon2	c.G23C	p.R8T	.	.	118	100	109	0	.	130
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9994549	9994563	+	Frame_Shift_Del	DEL	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	-	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	CGGTAAGTCACAAGT	CGGTAAGTCACAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TAF1B	NM_005680	exon5	c.398_399del	p.133_133del	.	.	82	11	94	0	.	92
TMEM71	137835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133734323	133734323	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TMEM71	NM_144649	exon7	c.C658G	p.L220V	.	.	710	308	415	1	.	92
TRIM43	129868	broad.mit.edu	37	2	96259887	96259887	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TRIM43	NM_138800	exon2	c.T116A	p.L39H	.	.	209	7	247	0	.	63
TYMP	1890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	50968105	50968105	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	TYMP	NM_001257989	exon2	c.C34T	p.P12S	.	.	57	27	110	0	.	23
VIL1	7429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219305556	219305556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VIL1	NM_007127	exon19	c.C2341T	p.P781S	.	.	86	39	86	0	.	91
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100883103	100883103	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	VPS13B	NM_017890	exon60	c.T11558G	p.V3853G	.	.	345	73	176	0	.	301
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168108386	168108386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XIRP2	NM_152381	exon9	c.G10484T	p.G3495V	.	.	52	15	76	0	.	104
XPR1	9213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180794056	180794056	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	XPR1	NM_004736	exon8	c.T931C	p.L311L	.	.	111	16	53	0	.	90
ZFP57	346171	broad.mit.edu	37	6	29644759	29644759	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ZFP57	NM_001109809	exon1	c.A22G	p.I8V	.	.	84	3	73	0	.	5
ZNF784	147808	broad.mit.edu	37	19	56133790	56133790	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	ZNF784	NM_203374	exon2	c.C299G	p.P100R	.	.	71	14	40	0	.	68
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35449077	35449077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K2-01A-12D-A33Q-10	TCGA-KR-A7K2-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cbf5cf66-d096-4a67-b0a1-7f985b2dcd42	6b5190db-85e5-485f-8174-2c1727487ef2	.	.	NM_175872	exon4	c.C1682T	p.P561L	.	.	173	75	148	0	.	.
