Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADNP2	22850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	77896211	77896211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ADNP2	NM_014913	exon4	c.C2915A	p.S972Y	.	.	52	18	49	0	.	140
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	9208758	9208758	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ANKRD12	NM_015208	exon5	c.G408C	p.Q136H	.	.	169	49	174	0	.	92
ANKRD20A5P	440482	broad.mit.edu	37	18	14179258	14179258	+	RNA	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ANKRD20A5P	.	.	.	.	.	.	18	5	10	0	.	90
ANKRD36	375248	broad.mit.edu	37	2	97869931	97869931	+	Missense_Mutation	SNP	A	A	T	rs76309140		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_001164315	exon50	c.A2992T	p.T998S	.	.	76	5	40	1	.	.
APC	324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	112174286	112174286	+	Nonsense_Mutation	SNP	C	C	T	rs75239284	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	APC	NM_001127510	exon17	c.C2995T	p.Q999X	.	.	104	48	96	0	.	12026
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145755886	145755886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ARHGAP39	NM_025251	exon13	c.G3265C	p.E1089Q	.	.	203	28	99	0	.	90
ATXN1	6310	hgsc.bcm.edu	37	6	16327864	16327865	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ATXN1	NM_000332	exon8	c.678_679insGCA	p.H226delinsQH	.	.	63	16	50	0	.	93
BPNT1	10380	ucsc.edu	37	1	220231338	220231338	+	RNA	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BPNT1	.	.	.	.	.	.	91	1	54	0	.	91
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49693730	49693730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BSN	NM_003458	exon5	c.T6741G	p.I2247M	.	.	61	22	104	0	.	97
BZRAP1	9256	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56400053	56400053	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	BZRAP1	NM_004758	exon9	c.C1279T	p.L427L	.	.	52	7	53	0	.	229
CAV1	857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	116165144	116165144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CAV1	NM_001753	exon1	c.G28A	p.E10K	.	.	104	22	105	0	.	946
CDSN	1041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31084730	31084730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CDSN	NM_001264	exon2	c.A662G	p.D221G	.	.	125	66	96	0	.	92
CELF1	10658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	47510522	47510522	+	Silent	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CELF1	NM_001172639	exon4	c.T126A	p.A42A	.	.	143	31	143	0	.	92
CIITA	4261	broad.mit.edu	37	16	10989531	10989531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CIITA	NM_000246	exon3	c.G205A	p.D69N	.	.	62	3	89	0	.	226
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70894595	70894595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL19A1	NM_001858	exon45	c.G2776A	p.G926R	.	.	97	31	88	0	.	156
COL4A2	1284	broad.mit.edu	37	13	111158852	111158852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL4A2	NM_001846	exon46	c.C4493T	p.T1498M	.	.	274	5	238	0	.	95
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107422545	107422545	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL4A6	NM_001847	exon26	c.T2258G	p.I753S	.	.	363	165	349	0	.	199
COL5A3	50509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10080566	10080566	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	COL5A3	NM_015719	exon55	c.A3969T	p.R1323S	.	.	95	41	110	0	.	99
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	7337	7337	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	ENST00000361624	exon1	c.G1434A	p.S478S	.	.	7	7	24	0	.	.
CPD	1362	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	28772780	28772780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CPD	NM_001304	exon12	c.G2615T	p.R872L	.	.	199	54	236	1	.	92
CRIP3	401262	hgsc.bcm.edu;bcgsc.ca	37	6	43274193	43274193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CRIP3	NM_206922	exon5	c.G391A	p.V131I	.	.	90	5	89	0	.	91
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	113347573	113347574	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CSMD3	NM_198123	exon45	c.7150_7151insT	p.V2384fs	.	.	197	21	96	0	.	1132
CTU2	348180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88776364	88776364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	CTU2	NM_001012759	exon3	c.C162G	p.F54L	.	.	39	11	66	0	.	23
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	461547	461547	+	Missense_Mutation	SNP	C	C	T	rs150303478	byfrequency	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	DECR2	NM_020664	exon8	c.C848T	p.P283L	.	.	55	17	92	0	C|0.999;T|0.001	90
DPP7	29952	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140008803	140008803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	DPP7	NM_013379	exon3	c.C213G	p.I71M	.	.	62	13	80	1	.	90
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	60464748	60464748	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	EFCAB3	NM_001144933	exon5	c.278delA	p.E93fs	.	.	92	39	64	0	.	227
ERF	2077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42754547	42754547	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ERF	NM_006494	exon2	c.C193T	p.R65W	.	.	82	41	86	0	.	658
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101153180	101153180	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FBXO43	NM_001029860	exon2	c.A1302G	p.L434L	.	.	354	38	151	0	.	226
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	13	39264296	39264296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	FREM2	NM_207361	exon1	c.G2815T	p.E939X	.	.	72	15	68	0	.	100
GFPT1	2673	broad.mit.edu	37	2	69575352	69575352	+	Silent	SNP	G	G	T	rs140814934	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	GFPT1	NM_001244710	exon11	c.C960A	p.P320P	.	.	125	3	107	0	G|1.000;A|0.000	91
HDDC3	374659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	91475134	91475134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HDDC3	NM_198527	exon3	c.C209T	p.T70I	.	.	23	8	36	0	.	91
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124731574	124731574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HEG1	NM_020733	exon6	c.C2849T	p.P950L	.	.	45	15	74	0	.	70
HIPK1	204851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	114483116	114483116	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	HIPK1	NM_198268	exon2	c.T111A	p.S37R	.	.	69	17	121	0	.	361
IQGAP3	128239	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156503828	156503828	+	Silent	SNP	G	G	A	rs80078241	byfrequency	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	IQGAP3	NM_178229	exon30	c.C3846T	p.T1282T	.	.	66	17	63	0	G|0.999;A|0.001	96
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55362664	55362664	+	Missense_Mutation	SNP	C	C	G	rs143272826	alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	IRX6	NM_024335	exon5	c.C774G	p.D258E	.	.	30	11	46	0	C|1.000;A|0.000	174
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	79397093	79397093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNMA1	NM_002247	exon1	c.T308A	p.F103Y	.	.	60	22	113	0	.	93
KCNV1	27012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	110980791	110980791	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KCNV1	NM_014379	exon3	c.C1029T	p.Y343Y	.	.	109	21	55	0	.	226
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	.	.	115	5	59	0	.	90
KRTAP10-6	386674	mdanderson.org	37	21	46011298	46011298	+	Silent	SNP	G	G	A	rs74695406		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KRTAP10-6	NM_198688	exon1	c.C1068T	p.S356S	.	.	119	19	68	1	A|1.000;|0.000	90
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118199277	118199277	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	KSR2	NM_173598	exon4	c.G438A	p.T146T	.	.	70	29	82	0	.	1449
LOC493754	0	bcgsc.ca	37	7	66021904	66021904	+	RNA	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	.	.	.	.	.	.	22	9	22	0	.	.
MAP4	4134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47958322	47958322	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP4	NM_001134364	exon7	c.A995C	p.K332T	.	.	70	17	98	0	.	93
MAP7D1	55700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	36638161	36638161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAP7D1	NM_018067	exon4	c.G557A	p.R186H	.	.	213	17	326	0	.	138
MAPK10	5602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86988958	86988958	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAPK10	NM_002753	exon10	c.T953A	p.F318Y	.	.	154	52	197	1	.	1402
MAVS	57506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	3845079	3845079	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MAVS	NM_020746	exon6	c.G802T	p.E268X	.	.	53	21	55	0	.	90
MBOAT1	154141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20124766	20124766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MBOAT1	NM_001080480	exon8	c.G780T	p.K260N	.	.	172	75	148	0	.	68
MGAT2	4247	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	50089030	50089030	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MGAT2	NM_002408	exon1	c.G1044A	p.W348X	.	.	90	22	92	0	.	90
MLLT3	4300	bcgsc.ca	37	9	20414376	20414376	+	Silent	SNP	A	A	G	rs1761445	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MLLT3	NM_004529	exon5	c.T468C	p.S156S	.	.	32	10	31	0	A|0.905;G|0.095	660
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MLLT3	NM_004529	exon5	c.C471T	p.S157S	.	.	33	5	32	0	.	660
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	107372216	107372216	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MTERFD3	NM_001033050	exon3	c.G277C	p.A93P	.	.	80	43	75	0	.	68
MUC6	4588	bcgsc.ca	37	11	1017824	1017824	+	Silent	SNP	G	G	C	rs201767599		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MUC6	NM_005961	exon31	c.C4977G	p.L1659L	.	.	191	9	258	4	.	23
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57432386	57432386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	MYO1A	NM_005379	exon17	c.A1570T	p.N524Y	.	.	83	13	89	0	.	231
NASP	4678	hgsc.bcm.edu	37	1	46073372	46073372	+	Missense_Mutation	SNP	G	G	C	rs202027114		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NASP	NM_002482	exon6	c.G789C	p.Q263H	.	.	137	7	143	0	G|0.995;C|0.005	91
NCOA5	57727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44695721	44695721	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NCOA5	NM_020967	exon5	c.602delC	p.S201fs	.	.	164	71	139	0	.	226
NEU3	10825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74716816	74716816	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.G665A	p.C222Y	.	.	44	15	46	0	.	24
NEU3	10825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74717089	74717089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NEU3	NM_006656	exon3	c.A938G	p.Q313R	.	.	31	6	37	0	.	24
NLRP11	204801	broad.mit.edu	37	19	56321545	56321545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	NLRP11	NM_145007	exon5	c.C431A	p.A144E	.	.	164	5	135	0	.	169
OR10J1	26476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	159410510	159410510	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR10J1	NM_012351	exon1	c.G962A	p.X321X	.	.	42	25	40	0	.	69
OR2T4	127074	bcgsc.ca	37	1	248524967	248524967	+	Missense_Mutation	SNP	A	A	G	rs200915140		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR2T4	NM_001004696	exon1	c.A85G	p.M29V	.	.	156	11	151	2	.	68
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936112	4936112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	OR51G2	NM_001005238	exon1	c.T782C	p.I261T	.	.	110	23	118	0	.	70
PCDHB16	57717	bcgsc.ca;mdanderson.org	37	5	140564263	140564263	+	Missense_Mutation	SNP	C	C	T	rs61742755	byfrequency	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PCDHB16	NM_020957	exon1	c.C2129T	p.A710V	.	.	31	9	33	0	C|0.931;T|0.069	92
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140745479	140745479	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PCDHGA5	NM_032054	exon1	c.C1582A	p.L528I	.	.	82	16	81	0	.	35
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	610529	610529	+	Missense_Mutation	SNP	C	C	T	rs201225978		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PHRF1	NM_020901	exon16	c.C4442T	p.P1481L	.	.	15	7	23	0	.	22
PPAN-P2RY11	692312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10225190	10225190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PPAN-P2RY11	NM_001040664	exon13	c.G2161A	p.V721M	.	.	43	23	38	0	.	24
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	14105088	14105088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PRDM2	NM_015866	exon8	c.G798T	p.L266F	.	.	131	8	174	0	.	116
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48701573	48701573	+	Missense_Mutation	SNP	G	G	A	rs147753989	by1000genomes;alternate_allele	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PRKDC	.	.	.	.	.	.	272	193	127	1	G|0.999;C|0.001	1515
PSG10P	653492	ucsc.edu;bcgsc.ca	37	19	43349191	43349191	+	RNA	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	.	.	.	.	.	.	21	10	27	0	.	.
PTCHD2	57540	broad.mit.edu	37	1	11561875	11561875	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	PTCHD2	NM_020780	exon2	c.G826T	p.E276X	.	.	55	4	64	0	.	209
R3HDM2	22864	bcgsc.ca;mdanderson.org	37	12	57662147	57662147	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	R3HDM2	NM_014925	exon16	c.C1927A	p.P643T	.	.	59	30	40	1	.	92
RALY	22913	broad.mit.edu	37	20	32664877	32664877	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RALY	NM_016732	exon8	c.C702T	p.G234G	.	.	98	5	49	1	.	91
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88227931	88227931	+	Silent	SNP	A	A	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RARS2	NM_020320	exon17	c.T1467C	p.C489C	.	.	123	20	106	0	.	92
RBP3	5949	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48389261	48389261	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RBP3	NM_002900	exon1	c.G1617A	p.L539L	.	.	34	4	44	0	.	153
RTKN	6242	broad.mit.edu	37	2	74659757	74659757	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RTKN	NM_001015055	exon2	c.C148A	p.R50R	.	.	122	4	141	0	.	91
RTN4RL1	146760	broad.mit.edu	37	17	1840387	1840387	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_178568	exon2	c.G729A	p.P243P	.	.	26	3	31	0	.	.
RUSC1	23623	broad.mit.edu	37	1	155292770	155292770	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	RUSC1	NM_001105203	exon2	c.A1206C	p.P402P	.	.	55	24	42	14	.	92
SCN7A	6332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167273323	167273323	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SCN7A	NM_002976	exon20	c.A3308C	p.N1103T	.	.	306	124	298	2	.	67
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	42643643	42643643	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SETBP1	NM_015559	exon6	c.G4771C	p.E1591Q	.	.	206	55	280	0	.	155
SFXN5	94097	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	73195621	73195621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SFXN5	NM_144579	exon12	c.G783A	p.M261I	.	.	248	68	273	1	.	91
SH3KBP1	30011	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	19560151	19560151	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SH3KBP1	NM_031892	exon16	c.G1784A	p.G595E	.	.	227	46	276	1	.	130
SIRPA	140885	ucsc.edu	37	20	1895842	1895842	+	Silent	SNP	T	T	C	rs17853847	bycluster;byfrequency;by1000genomes	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SIRPA	NM_001040022	exon3	c.T177C	p.S59S	.	.	71	9	60	2	T|0.881;C|0.119	227
SLC2A10	81031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45354604	45354604	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SLC2A10	NM_030777	exon2	c.C929G	p.S310C	.	.	59	24	43	0	.	91
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1221849	1221849	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SLC6A19	NM_001003841	exon12	c.C1735A	p.P579T	.	.	127	61	142	0	.	90
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88383836	88383836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SMYD1	NM_198274	exon2	c.C139T	p.L47F	.	.	119	54	109	0	.	229
SORCS3	22986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106849559	106849559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SORCS3	NM_014978	exon6	c.C1055T	p.A352V	.	.	117	40	117	0	.	99
SP9	100131390	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	175200837	175200837	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_001145250	exon2	c.A24T	p.E8D	.	.	230	113	188	0	.	.
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	17723609	17723613	+	Frame_Shift_Del	DEL	TGGAG	TGGAG	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	TGGAG	TGGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	SREBF1	NM_001005291	exon3	c.404_408del	p.135_136del	.	.	54	24	48	0	.	91
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56822710	56822710	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TIMELESS	NM_003920	exon11	c.A1261T	p.M421L	.	.	91	37	83	0	.	159
TLN1	7094	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35703656	35703656	+	Silent	SNP	C	C	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TLN1	NM_006289	exon48	c.G6375C	p.V2125V	.	.	78	32	72	1	.	609
TNFRSF11A	8792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	60036567	60036567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TNFRSF11A	NM_003839	exon9	c.G1417A	p.A473T	.	.	26	7	35	0	.	659
TNRC18	84629	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5416611	5416611	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TNRC18	NM_001080495	exon8	c.A2475G	p.P825P	.	.	114	12	141	1	.	46
TRIL	9865	broad.mit.edu;mdanderson.org	37	7	28997603	28997603	+	RNA	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	.	.	.	.	.	.	12	6	9	0	.	.
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230668295	230668295	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	TRIP12	NM_004238	exon19	c.G2765A	p.R922K	.	.	158	67	150	0	.	572
UBQLN1	29979	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	86297921	86297921	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBQLN1	NM_053067	exon3	c.A393G	p.S131S	.	.	64	6	92	0	.	90
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	42610159	42610159	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UBR2	NM_015255	exon18	c.T2037G	p.Y679X	.	.	56	27	56	0	.	94
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	UQCRFS1	NM_006003	exon1	c.T16G	p.S6A	.	.	6	5	0	0	A|0.065;C|0.935	226
USP6	9098	ucsc.edu	37	17	5037195	5037195	+	Missense_Mutation	SNP	G	G	A	rs74900103		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	USP6	NM_004505	exon7	c.G398A	p.R133K	.	.	48	11	47	0	.	662
WNT5A	7474	broad.mit.edu	37	3	55513358	55513358	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	WNT5A	NM_003392	exon3	c.C375T	p.G125G	.	.	111	4	121	0	.	946
WSCD1	23302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	6023676	6023676	+	Missense_Mutation	SNP	G	G	A	rs191802540		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	WSCD1	NM_015253	exon9	c.G1423A	p.V475I	.	.	74	37	72	0	G|0.999;A|0.000	90
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	114070355	114070355	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZBTB20	NM_001164342	exon4	c.G570A	p.T190T	.	.	41	7	36	0	.	95
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57058902	57058902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZFP28	NM_020828	exon3	c.C326T	p.A109V	.	.	175	35	160	0	.	91
ZNF322	79692	broad.mit.edu	37	6	26637624	26637624	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_001242797	exon5	c.A1158G	p.K386K	.	.	555	5	547	0	.	.
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57086027	57086027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF470	NM_001001668	exon5	c.G208T	p.D70Y	.	.	83	45	92	0	.	92
ZNF517	340385	broad.mit.edu	37	8	146032761	146032761	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF517	NM_213605	exon5	c.C460T	p.R154W	.	.	192	5	88	0	.	90
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37203683	37203683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	ZNF567	NM_152603	exon3	c.G44A	p.G15E	.	.	89	50	103	0	.	90
ZNF844	284391	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12187711	12187711	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	NM_001136501	exon4	c.1776delA	p.T592fs	.	.	111	28	104	0	.	.
NASP	4678	hgsc.bcm.edu	37	1	46073361	46073362	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-KR-A7K7-01A-11D-A33K-10	TCGA-KR-A7K7-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c81cbc1f-0de9-4578-a35e-014fb80c54a4	9edcdb8d-6a27-4c45-a22e-30466a7e13cd	.	.	.	.	.	p.Q262W	.	.	.	.	.	.	.	
