Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACAD8	27034	broad.mit.edu	37	11	134127137	134127137	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACAD8	NM_014384	exon3	c.T366C	p.Y122Y	.	.	80	4	66	0	.	90
ACADVL	37	ucsc.edu	37	17	7123830	7123830	+	Silent	SNP	G	G	A	rs2736882		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACADVL	NM_001270447	exon4	c.G255A	p.R85R	.	.	84	1	84	0	.	93
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89395101	89395101	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACAN	NM_001135	exon11	c.C2103A	p.I701I	.	.	130	23	184	0	.	25
ACOT2	10965	mdanderson.org	37	14	74041708	74041708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ACOT2	NM_006821	exon3	c.G943A	p.V315I	.	.	261	22	252	0	.	91
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148206993	148206993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ADRB2	NM_000024	exon1	c.C599T	p.A200V	.	.	55	13	59	0	.	523
ANKRD36BP2	645784	ucsc.edu	37	2	89102427	89102427	+	RNA	SNP	G	G	A	rs75022221		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	25	10	26	2	G|0.250;A|0.750	.
APBA2	321	broad.mit.edu	37	15	29346940	29346940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	APBA2	NM_005503	exon3	c.A853G	p.N285D	.	.	29	3	27	0	.	90
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu	37	1	27106176	27106176	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ARID1A	NM_006015	exon20	c.5787delT	p.S1929fs	.	.	111	10	115	0	.	584
ATN1	1822	bcgsc.ca	37	12	7045903	7045903	+	Silent	SNP	G	G	A	rs140703448	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ATN1	NM_001007026	exon5	c.G1473A	p.Q491Q	.	.	90	4	58	0	G|0.996;A|0.004	139
BAG6	7917	broad.mit.edu;mdanderson.org	37	6	31610118	31610118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	BAG6	NM_004639	exon15	c.G2016T	p.Q672H	.	.	47	6	28	0	.	154
C19orf45	374877	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7570453	7570453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	C19orf45	NM_198534	exon6	c.G946A	p.G316R	.	.	44	5	52	0	.	90
CBL	867	broad.mit.edu	37	11	119077190	119077190	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CBL	NM_005188	exon1	c.T63G	p.G21G	.	.	19	7	14	1	.	4020
CBWD1	55871	hgsc.bcm.edu	37	9	154795	154795	+	Silent	SNP	T	T	C	rs76344156		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CBWD1	NM_001145356	exon8	c.A576G	p.R192R	.	.	5	5	0	0	.	469
CCDC108	255101	broad.mit.edu	37	2	219897236	219897236	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC108	NM_194302	exon6	c.G601T	p.G201C	.	.	118	4	113	0	.	94
CCDC137	339230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	79638802	79638802	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC137	NM_199287	exon4	c.C526T	p.R176X	.	.	124	26	95	0	.	69
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	191107379	191107379	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CCDC50	NM_178335	exon11	c.T1417G	p.S473A	.	.	173	12	152	0	.	90
CELSR3	1951	bcgsc.ca	37	3	48691840	48691874	+	Frame_Shift_Del	DEL	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	-	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	GTTGGGGACACCTCCCAGAAGAAGAGGGCCCGTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CELSR3	NM_001407	exon7	c.5000_5034del	p.1667_1678del	.	.	160	7	302	0	.	523
CHCHD4	131474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14158003	14158003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CHCHD4	NM_144636	exon3	c.T83C	p.V28A	.	.	75	17	107	0	.	90
CLEC1A	51267	hgsc.bcm.edu;broad.mit.edu	37	12	10228256	10228256	+	Splice_Site	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CLEC1A	NM_016511	exon5	c.392-2A>G	.	.	.	117	7	99	0	.	91
CT45A5	441521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134947978	134947978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	CT45A5	NM_001007551	exon3	c.C347G	p.P116R	.	.	79	30	68	0	.	44
DDX17	10521	broad.mit.edu;ucsc.edu	37	22	38882316	38882316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DDX17	NM_001098504	exon13	c.G1820C	p.R607P	.	.	101	5	90	0	.	229
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	234299114	234299114	+	Silent	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DGKD	NM_152879	exon3	c.C333A	p.V111V	.	.	85	7	91	0	.	676
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	13776635	13776635	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DNAH5	NM_001369	exon55	c.C9286T	p.R3096X	.	.	244	25	231	0	.	182
DNAH7	56171	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	196891538	196891538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	DNAH7	NM_018897	exon7	c.A613G	p.T205A	.	.	105	8	84	1	.	102
ERG	2078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	39755511	39755511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ERG	NM_001136154	exon12	c.G1275A	p.M425I	.	.	81	12	102	0	.	848
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	45	4	44	0	.	.
FAM187B	148109	ucsc.edu;bcgsc.ca	37	19	35718938	35718938	+	Missense_Mutation	SNP	C	C	T	rs564117	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FAM187B	NM_152481	exon1	c.G646A	p.V216I	.	.	111	12	145	0	C|0.811;T|0.189	92
FAM65B	9750	broad.mit.edu;bcgsc.ca	37	6	24843221	24843221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FAM65B	NM_014722	exon14	c.A1789G	p.R597G	.	.	113	7	105	1	.	91
FBXO18	84893	broad.mit.edu;ucsc.edu	37	10	5945117	5945117	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FBXO18	NM_032807	exon3	c.A289T	p.R97X	.	.	67	7	80	0	.	228
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu	37	3	46008641	46008641	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	FYCO1	NM_024513	exon8	c.G2185T	p.E729X	.	.	48	4	51	0	.	91
GALNT12	79695	bcgsc.ca;mdanderson.org	37	9	101570276	101570276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GALNT12	NM_024642	exon1	c.G296T	p.R99L	.	.	26	5	25	0	.	92
GAS6	2621	hgsc.bcm.edu	37	13	114537552	114537552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GAS6	NM_000820	exon8	c.A806G	p.K269R	.	.	48	5	76	0	.	650
GLRA3	8001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175564944	175564944	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GLRA3	NM_006529	exon10	c.A1388C	p.Q463P	.	.	101	13	77	0	.	93
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52617735	52617735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	GSTA2	NM_000846	exon5	c.T331G	p.F111V	.	.	88	8	94	0	.	91
HIST1H2BK	85236	broad.mit.edu	37	6	27114569	27114569	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	HIST1H2BK	NM_080593	exon1	c.A9G	p.E3E	.	.	138	8	90	1	.	68
HIST1H3C	8352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26045686	26045686	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	HIST1H3C	NM_003531	exon1	c.T48A	p.A16A	.	.	121	13	113	0	.	69
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	75906955	75906955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	IQGAP2	NM_006633	exon13	c.C1468T	p.H490Y	.	.	74	10	108	0	.	96
KLHL5	51088	broad.mit.edu	37	4	39077644	39077644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	KLHL5	NM_015990	exon2	c.A581G	p.D194G	.	.	148	4	179	1	.	91
KRT71	112802	ucsc.edu	37	12	52946794	52946794	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	KRT71	NM_033448	exon1	c.T68C	p.V23A	.	.	40	5	53	0	.	92
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	98	32	87	0	A|0.046;T|0.954	22
LCN9	392399	broad.mit.edu	37	9	138556579	138556579	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LCN9	NM_001001676	exon3	c.A245G	p.E82G	.	.	82	6	86	1	.	67
LHFPL3	375612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	103969491	103969491	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_199000	exon1	c.G264T	p.L88L	.	.	65	13	62	0	.	.
LOC283683	0	broad.mit.edu	37	15	23108883	23108883	+	RNA	SNP	T	T	C	rs3178813	byfrequency;by1000genomes	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	29	7	25	0	G|0.067;A|0.933	.
LOH12CR1	118426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	12514204	12514204	+	Silent	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LOH12CR1	NM_058169	exon2	c.C123T	p.S41S	.	.	147	12	162	0	.	91
LRIG1	26018	hgsc.bcm.edu;broad.mit.edu	37	3	66431944	66431944	+	Missense_Mutation	SNP	G	G	A	rs201954431		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRIG1	NM_015541	exon17	c.C2729T	p.A910V	.	.	91	4	94	0	.	230
LRRK1	79705	broad.mit.edu	37	15	101595343	101595343	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRRK1	NM_024652	exon27	c.C4247G	p.S1416X	.	.	108	4	90	0	.	602
LRRK1	79705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101569225	101569225	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	LRRK1	NM_024652	exon20	c.G2751A	p.R917R	.	.	63	7	68	1	.	602
MIR1324	100302212	bcgsc.ca	37	3	75679963	75679963	+	RNA	SNP	C	C	T	rs201125883	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	49	7	57	2	C|0.923;T|0.078	.
MIR1324	100302212	bcgsc.ca	37	3	75679993	75679993	+	RNA	SNP	C	C	T	rs202177109	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	43	8	64	1	C|0.943;T|0.057	.
MLLT3	4300	broad.mit.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MLLT3	NM_004529	exon5	c.C471T	p.S157S	.	.	33	4	32	0	.	660
MN1	4330	bcgsc.ca	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MN1	NM_002430	exon1	c.G1596A	p.Q532Q	.	.	35	5	40	0	C|0.963;T|0.037	993
MST1P2	11209	ucsc.edu	37	1	16974868	16974868	+	RNA	SNP	G	G	T	rs28715800	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	.	.	.	.	.	.	32	17	27	8	G|0.835;T|0.165	.
MYH14	79784	broad.mit.edu	37	19	50779294	50779294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MYH14	NM_001145809	exon28	c.C3514T	p.R1172W	.	.	162	5	162	0	.	23
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36700184	36700184	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	MYH9	NM_002473	exon19	c.C2247A	p.L749L	.	.	103	16	119	0	.	292
NCOR2	9612	ucsc.edu	37	12	124827693	124827693	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NCOR2	NM_006312	exon35	c.C4794T	p.S1598S	.	.	64	1	83	0	.	229
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14108	14108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	ENST00000361567	exon1	c.T1772C	p.F591S	.	.	154	39	26	0	.	.
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51190328	51190328	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NIN	NM_020921	exon31	c.G6255T	p.L2085F	.	.	111	18	136	0	.	229
NOS1	4842	broad.mit.edu	37	12	117703190	117703190	+	Silent	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NOS1	NM_000620	exon12	c.C2067A	p.S689S	.	.	77	4	104	0	.	154
NOTCH3	4854	broad.mit.edu;mdanderson.org	37	19	15288466	15288466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	NOTCH3	NM_000435	exon24	c.T4273C	p.W1425R	.	.	14	3	14	0	.	855
OR1A1	8383	broad.mit.edu	37	17	3119176	3119176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	OR1A1	NM_014565	exon1	c.G262T	p.G88C	.	.	83	4	84	0	.	70
PENK	5179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57354357	57354357	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PENK	NM_001135690	exon4	c.G278A	p.S93N	.	.	81	10	91	0	.	517
PHACTR4	65979	broad.mit.edu	37	1	28802769	28802769	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PHACTR4	NM_023923	exon7	c.C1602G	p.Y534X	.	.	393	13	351	0	.	90
PIK3C2B	5287	broad.mit.edu	37	1	204413483	204413483	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PIK3C2B	NM_002646	exon18	c.A2748G	p.L916L	.	.	74	5	89	0	.	1310
PMP2	5375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	82357195	82357195	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PMP2	NM_002677	exon2	c.A103G	p.N35D	.	.	105	22	82	0	.	90
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	POTEC	NM_001137671	exon10	c.A1519G	p.K507E	.	.	173	5	210	0	.	3
PPP1R14D	54866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	41120819	41120819	+	Silent	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PPP1R14D	NM_017726	exon1	c.T21G	p.A7A	.	.	70	14	86	0	.	658
PSMA8	143471	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	23772351	23772352	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PSMA8	NM_144662	exon7	c.747_748insA	p.K249fs	.	.	97	15	73	0	.	91
PTPRE	5791	ucsc.edu	37	10	129881126	129881126	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	PTPRE	NM_006504	exon21	c.C2059T	p.Q687X	.	.	43	4	29	0	.	227
RAB40AL	282808	broad.mit.edu	37	X	102192424	102192424	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RAB40AL	NM_001031834	exon1	c.G178A	p.G60S	.	.	319	5	345	2	.	92
RHBDD1	84236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	227729638	227729638	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RHBDD1	NM_001167608	exon4	c.G229A	p.D77N	.	.	98	9	131	0	.	91
RNF11	26994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51736890	51736890	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RNF11	NM_014372	exon3	c.T361C	p.Y121H	.	.	61	6	51	0	.	226
RTN4R	65078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	20229527	20229527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RTN4R	NM_023004	exon2	c.C1129T	p.R377W	.	.	30	12	22	0	.	90
RUNX3	864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	25229111	25229111	+	Silent	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	RUNX3	NM_001031680	exon6	c.C792T	p.R264R	.	.	105	17	141	0	.	414
SETD8	387893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123880924	123880924	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SETD8	NM_020382	exon5	c.T542G	p.L181R	.	.	34	8	50	0	.	90
SMG7	9887	broad.mit.edu	37	1	183486833	183486833	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SMG7	NM_201569	exon4	c.G190A	p.A64T	.	.	88	7	104	0	.	92
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	97197265	97197265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SORBS1	NM_001034955	exon2	c.A58T	p.S20C	.	.	148	11	189	0	.	155
SPDYE3	441272	broad.mit.edu	37	7	99917393	99917393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SPDYE3	NM_001004351	exon9	c.C1552A	p.R518S	.	.	62	6	66	2	.	22
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	108	21	108	0	A|0.000;C|0.697;T|0.303	45
ST3GAL5	8869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	86075256	86075256	+	Silent	SNP	C	C	T	rs144270260	byfrequency	TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ST3GAL5	NM_003896	exon4	c.G390A	p.A130A	.	.	128	24	160	0	C|0.999;T|0.001	90
TAAR2	9287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132938785	132938785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TAAR2	NM_001033080	exon2	c.G560T	p.G187V	.	.	96	12	123	0	.	91
THOC5	8563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29907254	29907254	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	THOC5	NM_001002878	exon20	c.A1829T	p.K610M	.	.	60	8	51	0	.	585
TMEM150B	284417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55824349	55824349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TMEM150B	NM_001085488	exon8	c.G580A	p.A194T	.	.	86	11	98	0	.	68
TMPRSS7	344805	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	111785346	111785346	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TMPRSS7	NM_001042575	exon11	c.C1285T	p.Q429X	.	.	143	19	98	1	.	70
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	72975749	72975749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TRPA1	NM_007332	exon5	c.C610A	p.Q204K	.	.	85	7	58	0	.	230
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	135781136	135781136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSC1	NM_000368	exon15	c.T1829C	p.V610A	.	.	150	10	141	0	.	1906
TSSC4	10078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	2424029	2424029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TSSC4	NM_005706	exon2	c.G166T	p.G56W	.	.	100	12	94	0	.	90
TTN	7273	broad.mit.edu;bcgsc.ca	37	2	179614478	179614478	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TTN	NM_133379	exon46	c.T12649G	p.Y4217D	.	.	143	7	137	1	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179614477	179614477	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	TTN	NM_133379	exon46	c.A12650T	p.Y4217F	.	.	145	8	134	0	.	636
WHAMM	123720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83481941	83481941	+	Silent	SNP	T	T	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_001080435	exon2	c.T696A	p.V232V	.	.	192	32	260	0	.	.
WIPI2	26100	ucsc.edu	37	7	5265522	5265522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	WIPI2	NM_015610	exon9	c.A809T	p.E270V	.	.	73	3	82	0	.	516
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151687673	151687673	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZBTB2	NM_020861	exon3	c.G528T	p.Q176H	.	.	77	15	89	0	.	91
ZC3H12D	340152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	149771968	149771968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_207360	exon6	c.G1435A	p.A479T	.	.	27	8	22	0	.	.
ZNF133	7692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	18296766	18296766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF133	NM_001083330	exon4	c.C1268A	p.T423N	.	.	45	7	55	0	.	92
ZNF311	282890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	28963560	28963560	+	Silent	SNP	T	T	G	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF311	NM_001010877	exon7	c.A1219C	p.R407R	.	.	286	15	197	0	.	22
ZNF33A	7581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	38343571	38343571	+	Silent	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF33A	NM_006954	exon5	c.T519C	p.C173C	.	.	55	11	84	0	.	93
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71756473	71756473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF366	NM_152625	exon2	c.C851T	p.T284M	.	.	59	7	57	0	.	91
ZNF544	27300	broad.mit.edu	37	19	58773149	58773149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	ZNF544	NM_014480	exon7	c.T1177C	p.Y393H	.	.	88	3	85	0	.	91
ZNF814	730051	bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	141	48	110	2	.	.
ZNF814	730051	bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-KR-A7K8-01A-11D-A33K-10	TCGA-KR-A7K8-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	a4fc5ba8-74ba-4047-8857-5d6d6cbc978b	96ab975c-1da6-431f-a23b-cbfeaf1697dc	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	108	32	99	1	.	.
