Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACR	49	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51183204	51183204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ACR	NM_001097	exon5	c.T835C	p.W279R	.	.	171	64	176	0	.	90
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	127753560	127753560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ADAM12	NM_021641	exon14	c.C1433T	p.A478V	.	.	31	16	33	0	.	716
ALX1	8092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85677457	85677457	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ALX1	NM_006982	exon2	c.G334A	p.E112K	.	.	120	41	120	0	.	24
AMPD3	272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10527413	10527413	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	AMPD3	NM_000480	exon15	c.C2313T	p.I771I	.	.	36	15	45	0	.	291
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	90335706	90335706	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.G2337A	p.W779X	.	.	95	33	126	0	.	94
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90335708	90335708	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANPEP	NM_001150	exon17	c.T2335G	p.W779G	.	.	94	34	128	0	.	94
ANXA1	301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	75782426	75782426	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ANXA1	NM_000700	exon11	c.A816T	p.T272T	.	.	123	9	150	0	.	650
ARFRP1	10139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62338416	62338416	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARFRP1	NM_001134758	exon2	c.A28G	p.K10E	.	.	49	20	60	0	.	291
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46123902	46123902	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon2	c.168delT	p.T56fs	.	.	110	46	117	0	.	100
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46246499	46246499	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ARID2	NM_152641	exon15	c.4593delA	p.P1531fs	.	.	88	26	75	0	.	100
ATN1	1822	hgsc.bcm.edu	37	12	7045894	7045894	+	Missense_Mutation	SNP	G	G	C	rs139947770	byfrequency;alternate_allele	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATN1	NM_001007026	exon5	c.G1464C	p.Q488H	.	.	98	7	85	0	G|0.991;A|0.009	139
ATP5L	10632	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	118277703	118277703	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATP5L	NM_006476	exon2	c.A104C	p.K35T	.	.	20	5	43	0	.	90
ATRN	8455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3541522	3541522	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ATRN	NM_139321	exon8	c.T1417G	p.Y473D	.	.	132	51	189	0	.	154
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	118769207	118769207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BCL9L	NM_182557	exon8	c.C4417A	p.P1473T	.	.	62	28	83	0	.	229
BDKRB2	624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	96707560	96707560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	BDKRB2	NM_000623	exon3	c.G895A	p.G299S	.	.	52	20	43	0	.	662
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29295459	29295459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	C2orf71	NM_001029883	exon1	c.G1669T	p.V557L	.	.	48	16	70	0	.	91
C6orf226	441150	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42858426	42858426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001008739	exon1	c.T101C	p.L34P	.	.	44	16	53	1	.	.
C8orf82	414919	hgsc.bcm.edu	37	8	145752900	145752900	+	Silent	SNP	C	C	T	rs11557085		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	C8orf82	NM_001001795	exon3	c.G477A	p.P159P	.	.	6	6	0	0	C|0.601;T|0.399	44
CARS2	79587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	111335421	111335421	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CARS2	NM_024537	exon6	c.T632G	p.V211G	.	.	40	19	44	0	.	90
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu	37	20	32199083	32199084	+	In_Frame_Ins	INS	-	-	CAATGACAT	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CBFA2T2	NM_005093	exon4	c.389_390insCAATGACAT	p.G130delinsGNDI	.	.	74	10	105	0	.	92
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52830265	52830265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CC2D1B	NM_032449	exon2	c.G28T	p.G10C	.	.	22	8	44	0	.	92
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	91779756	91779756	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CCDC88C	NM_001080414	exon15	c.G2404C	p.D802H	.	.	26	10	23	0	.	25
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91389492	91389492	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001145065	exon5	c.G1711A	p.E571K	.	.	145	42	171	0	.	.
CD164L2	388611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27709145	27709145	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD164L2	NM_207397	exon2	c.G101A	p.R34Q	.	.	60	26	76	0	.	90
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35832797	35832797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CD22	NM_001185100	exon9	c.G1964C	p.G655A	.	.	66	25	84	0	.	526
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109812678	109812678	+	Missense_Mutation	SNP	A	A	G	rs78104849		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CELSR2	NM_001408	exon23	c.A7231G	p.I2411V	.	.	99	37	123	0	A|0.999;G|0.000	526
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	146747921	146747921	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD1L	NM_004284	exon14	c.G1539A	p.Q513Q	.	.	66	22	73	0	.	231
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6703766	6703778	+	Frame_Shift_Del	DEL	TCCACCTGTAGCA	TCCACCTGTAGCA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	TCCACCTGTAGCA	TCCACCTGTAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHD4	NM_001273	exon15	c.2160_2172del	p.720_724del	.	.	107	33	96	0	.	228
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu	37	15	78894345	78894345	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CHRNA3	NM_000743	exon5	c.A639T	p.P213P	.	.	94	4	111	0	.	515
CNBD1	168975	broad.mit.edu	37	8	88364024	88364024	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CNBD1	NM_173538	exon9	c.1152+2T>C	.	.	.	116	5	64	0	.	3
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71688713	71688713	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COL13A1	NM_001130103	exon27	c.G1410T	p.G470G	.	.	62	11	122	0	.	91
COPZ1	22818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54736037	54736037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	COPZ1	NM_001271736	exon3	c.G159T	p.E53D	.	.	89	31	113	0	.	90
CPT1B	1375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51014481	51014481	+	Missense_Mutation	SNP	T	T	C	rs148070553		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CPT1B	NM_001145135	exon7	c.A760G	p.S254G	.	.	44	18	56	0	T|1.000;C|0.000	116
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113304861	113304861	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CSMD3	NM_198123	exon55	c.C8693A	p.T2898K	.	.	223	24	97	1	.	1132
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	.	.	68	27	61	0	.	24361
CYP11B2	1585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143994269	143994269	+	Missense_Mutation	SNP	A	A	G	rs28930074		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	CYP11B2	NM_000498	exon7	c.T1154C	p.V385A	.	.	131	20	68	0	.	90
DDX18	8886	broad.mit.edu	37	2	118588188	118588188	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DDX18	NM_006773	exon14	c.A1901G	p.K634R	.	.	276	4	351	0	.	290
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95574719	95574719	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DICER1	NM_030621	exon16	c.A2378G	p.Y793C	.	.	69	21	78	0	.	961
DMRTA2	63950	hgsc.bcm.edu	37	1	50884778	50884778	+	Silent	SNP	G	G	A	rs2746610	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_032110	exon3	c.C1188T	p.A396A	.	.	5	5	1	0	T|0.877;C|0.120	.
DMRTB1	63948	broad.mit.edu;bcgsc.ca	37	1	53932274	53932274	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DMRTB1	NM_033067	exon4	c.A968T	p.Q323L	.	.	200	7	217	0	.	92
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196866480	196866480	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DNAH7	NM_018897	exon11	c.T1092A	p.A364A	.	.	112	41	135	0	.	102
DPYSL2	1808	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	26485436	26485436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DPYSL2	NM_001197293	exon7	c.G985T	p.V329L	.	.	25	5	63	0	.	153
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117352790	117352790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSCAML1	NM_020693	exon12	c.G2627A	p.R876Q	.	.	81	28	107	0	.	159
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65179142	65179142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DSEL	NM_032160	exon2	c.G2734T	p.D912Y	.	.	73	23	94	0	.	157
DTX3L	151636	hgsc.bcm.edu	37	3	122288501	122288501	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	DTX3L	NM_138287	exon3	c.A1565T	p.E522V	.	.	68	4	100	0	.	587
EEA1	8411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93205145	93205145	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EEA1	NM_003566	exon17	c.T2109C	p.H703H	.	.	62	38	54	0	.	229
EP400NL	347918	bcgsc.ca	37	12	132610931	132610931	+	RNA	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	56	29	54	0	.	.
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	111598279	111598279	+	Splice_Site	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPB41L4A	NM_022140	exon8	c.555-1G>A	.	.	.	61	20	57	0	.	91
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22902830	22902830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	EPHA8	NM_020526	exon3	c.G280A	p.A94T	.	.	177	76	194	0	.	1380
ESRRB	2103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76905705	76905705	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ESRRB	NM_004452	exon4	c.G9A	p.S3S	.	.	67	29	96	0	.	188
FADD	8772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049616	70049616	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FADD	NM_003824	exon1	c.C51T	p.S17S	.	.	101	34	122	0	.	660
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	225266002	225266002	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM124B	NM_024785	exon1	c.A484T	p.R162X	.	.	82	30	69	0	.	92
FAM160A1	729830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	152550986	152550986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001109977	exon8	c.G1111A	p.D371N	.	.	50	13	74	0	.	.
FAM179A	165186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	29222109	29222109	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FAM179A	NM_199280	exon4	c.G202T	p.G68X	.	.	59	15	78	0	.	26
FAM86DP	692099	broad.mit.edu;bcgsc.ca	37	3	75472165	75472165	+	RNA	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	414	15	535	1	.	.
FCGR1C	100132417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	149374999	149374999	+	RNA	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	209	69	293	0	.	.
FHOD3	80206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	34174853	34174853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FHOD3	NM_025135	exon7	c.C710A	p.T237K	.	.	100	39	101	0	.	139
FLG2	388698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152323836	152323836	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FLG2	NM_001014342	exon3	c.G6426T	p.G2142G	.	.	188	32	129	0	.	151
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171178027	171178027	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FMO2	NM_001460	exon9	c.T1351A	p.S451T	.	.	119	25	85	0	.	91
FNBP4	23360	broad.mit.edu	37	11	47788826	47788826	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FNBP4	NM_015308	exon1	c.C15T	p.S5S	.	.	7	2	8	0	.	91
FZD5	7855	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208632778	208632778	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	FZD5	NM_003468	exon2	c.C686A	p.A229D	.	.	70	32	70	1	.	660
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161113294	161113294	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GABRA6	NM_000811	exon2	c.A97G	p.S33G	.	.	59	23	89	0	.	163
GALK1	2584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73761055	73761055	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GALK1	NM_000154	exon1	c.A163G	p.M55V	.	.	102	34	140	0	.	90
GLCE	26035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69560737	69560737	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GLCE	NM_015554	exon5	c.T1008C	p.D336D	.	.	85	32	94	0	.	92
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	78427073	78427073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	GPR174	NM_032553	exon1	c.A569G	p.E190G	.	.	72	6	84	0	.	130
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12120854	12120854	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HIVEP1	NM_002114	exon4	c.G826T	p.A276S	.	.	82	36	102	0	.	139
HMCN1	83872	broad.mit.edu	37	1	185951500	185951500	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HMCN1	NM_031935	exon18	c.G2769T	p.R923R	.	.	164	4	142	1	.	113
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	76471204	76471204	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HNF4G	NM_004133	exon8	c.A1025T	p.Q342L	.	.	136	20	78	0	.	187
HPCAL4	51440	bcgsc.ca	37	1	40149792	40149792	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	HPCAL4	NM_016257	exon3	c.G195A	p.A65A	.	.	71	5	94	0	.	90
ITGAM	3684	bcgsc.ca	37	16	31273020	31273020	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ITGAM	NM_000632	exon2	c.C36A	p.T12T	.	.	72	5	95	0	.	226
JMJD7-PLA2G4B	8681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42126967	42126967	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	JMJD7-PLA2G4B	NM_005090	exon2	c.C94T	p.L32L	.	.	59	21	84	1	.	135
KAT5	10524	hgsc.bcm.edu	37	11	65484247	65484247	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KAT5	NM_182710	exon9	c.A1139G	p.K380R	.	.	95	4	96	0	.	90
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	155891367	155891367	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA0907	NM_014949	exon10	c.T1065G	p.Y355X	.	.	239	201	180	0	.	90
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1890603	1890603	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KIAA1751	NM_001080484	exon16	c.G1807C	p.G603R	.	.	40	12	67	0	.	69
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	KRAS,NS,haematopoietic_neoplasm,0	KRAS	NM_004985	exon2	c.G35A	p.G12D	.	.	162	75	176	0	.	92875
KRT10	3858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38976377	38976377	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	KRT10	NM_000421	exon5	c.G1079C	p.S360T	.	.	61	24	70	0	.	90
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107580787	107580787	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LAMB1	NM_002291	exon25	c.C3408T	p.P1136P	.	.	42	18	34	0	.	97
LGALS3BP	3959	ucsc.edu;bcgsc.ca	37	17	76973243	76973243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LGALS3BP	NM_005567	exon2	c.C31A	p.L11M	.	.	28	4	53	0	.	515
LINC00862	554279	broad.mit.edu;ucsc.edu	37	1	200312363	200312363	+	RNA	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	127	53	81	0	.	.
LOC440518	0	broad.mit.edu	37	19	22782314	22782314	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	6	4	10	0	.	.
LOC650368	0	broad.mit.edu	37	11	3424836	3424836	+	RNA	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	364	5	414	0	.	.
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46921486	46921486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	LRP4	NM_002334	exon4	c.G358A	p.G120S	.	.	46	13	52	0	.	94
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30681730	30681731	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MDC1	NM_014641	exon3	c.366_367del	p.122_123del	.	.	72	25	98	0	.	273
METTL13	51603	broad.mit.edu	37	1	171759605	171759605	+	Silent	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	METTL13	NM_015935	exon5	c.G1323C	p.R441R	.	.	364	4	224	0	.	91
MIR186	406962	ucsc.edu;mdanderson.org	37	1	71533380	71533380	+	RNA	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	250	95	258	0	.	.
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MLLT3	NM_004529	exon5	c.T501C	p.S167S	.	.	18	4	30	1	.	660
MOCOS	55034	broad.mit.edu	37	18	33840082	33840082	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MOCOS	NM_017947	exon13	c.A2353G	p.R785G	.	.	122	4	127	0	.	91
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	60742016	60742016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MRC2	NM_006039	exon2	c.C226A	p.R76S	.	.	51	14	45	0	.	117
MROH5	389690	ucsc.edu	37	8	142506546	142506546	+	Nonsense_Mutation	SNP	G	G	A	rs138841422	alternate_allele	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	205	45	121	2	G|0.991;T|0.009	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9084547	9084547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MUC16	NM_024690	exon1	c.A7268C	p.N2423T	.	.	93	6	183	0	.	566
MUC2	4583	bcgsc.ca	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	MUC2	NM_002457	exon30	c.G5212A	p.G1738S	.	.	95	7	105	2	.	90
N4BP2L2	10443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	33110720	33110720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	N4BP2L2	NM_014887	exon2	c.A445G	p.I149V	.	.	139	50	182	0	.	68
NEO1	4756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73541427	73541427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	NEO1	NM_001172623	exon10	c.C1633T	p.L545F	.	.	41	23	61	1	.	116
NID2	22795	broad.mit.edu	37	14	52520800	52520800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	NID2	NM_007361	exon4	c.T1007C	p.L336S	.	.	100	5	92	0	.	158
OR13C9	286362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107379836	107379836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR13C9	NM_001001956	exon1	c.C650A	p.S217Y	.	.	52	21	71	0	.	68
OR2L13	284521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248263223	248263223	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2L13	NM_175911	exon3	c.C546T	p.A182A	.	.	153	68	111	0	.	70
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248366590	248366590	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR2M3	NM_001004689	exon1	c.T221C	p.I74T	.	.	260	46	192	0	.	70
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587642	55587642	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	OR5D18	NM_001001952	exon1	c.C537T	p.F179F	.	.	93	28	115	0	.	71
PARG	8505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51040916	51040916	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PARG	NM_003631	exon16	c.G2580T	p.E860D	.	.	150	44	199	0	.	948
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195975135	195975135	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PCYT1A	NM_005017	exon5	c.G277T	p.A93S	.	.	63	26	80	0	.	90
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	608998	608998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PHRF1	NM_020901	exon14	c.G3539T	p.R1180L	.	.	25	11	35	0	.	22
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	99400560	99400560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PI4K2A	NM_018425	exon1	c.C61T	p.P21S	.	.	44	18	35	0	.	226
PIGL	9487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16216896	16216896	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PIGL	NM_004278	exon4	c.C462A	p.H154Q	.	.	74	29	99	0	.	226
PKD1	5310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2158624	2158624	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKD1	NM_000296	exon15	c.C6544G	p.Q2182E	.	.	46	16	53	0	.	91
PKMYT1	9088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3024301	3024301	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PKMYT1	NM_182687	exon6	c.G1097A	p.G366D	.	.	105	35	117	0	.	765
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	19436367	19436367	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PLEKHA5	NM_001256470	exon12	c.A1467G	p.T489T	.	.	66	36	57	0	.	227
POF1B	79983	broad.mit.edu	37	X	84606411	84606411	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	POF1B	NM_024921	exon5	c.A485C	p.N162T	.	.	114	3	143	0	.	130
POTEF	728378	broad.mit.edu	37	2	130877866	130877866	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	POTEF	NM_001099771	exon3	c.A223G	p.S75G	.	.	165	6	184	1	.	27
POU5F1B	5462	hgsc.bcm.edu;broad.mit.edu	37	8	128428177	128428199	+	Frame_Shift_Del	DEL	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	ATGGGGGGCGGAGCCGGGCTGGG	ATGGGGGGCGGAGCCGGGCTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001159542	exon1	c.66_88del	p.22_30del	.	.	76	0	57	0	.	.
PRKACB	5567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	84662426	84662427	+	Splice_Site	INS	-	-	TA	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PRKACB	NM_002731	exon6	c.546+1->TA	.	.	.	124	50	155	0	.	1083
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11591710	11591710	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTCHD2	NM_020780	exon17	c.C3318T	p.H1106H	.	.	96	31	104	0	.	209
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70953301	70953301	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PTPRB	NM_001109754	exon18	c.G4536A	p.E1512E	.	.	173	47	155	0	.	226
PVRL2	5819	broad.mit.edu	37	19	45381766	45381766	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	PVRL2	NM_002856	exon6	c.G1329A	p.E443E	.	.	57	3	76	0	.	90
QRICH2	84074	broad.mit.edu;mdanderson.org	37	17	74271920	74271920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	QRICH2	NM_032134	exon18	c.T4964G	p.I1655S	.	.	18	6	23	0	.	94
RASAL3	64926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15569403	15569403	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_022904	exon7	c.C726A	p.A242A	.	.	26	16	40	0	.	.
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	48390301	48390301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RBP3	NM_002900	exon1	c.A577G	p.I193V	.	.	121	6	159	0	.	153
RECK	8434	hgsc.bcm.edu;broad.mit.edu	37	9	36116999	36116999	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RECK	NM_021111	exon17	c.A2078T	p.Q693L	.	.	78	4	93	0	.	93
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	100046405	100046405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	REV1	NM_016316	exon9	c.A1444G	p.I482V	.	.	169	62	246	0	.	92
RGS12	6002	broad.mit.edu;mdanderson.org	37	4	3415912	3415912	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RGS12	NM_002926	exon5	c.T2134A	p.W712R	.	.	11	3	24	0	.	226
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24808429	24808429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RIPK3	NM_006871	exon3	c.C263T	p.P88L	.	.	57	26	50	0	.	946
RNF130	55819	bcgsc.ca	37	5	179440176	179440176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RNF130	NM_018434	exon3	c.G578A	p.G193D	.	.	92	5	66	0	.	227
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18586398	18586398	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ROCK1	NM_005406	exon16	c.A1799C	p.D600A	.	.	46	19	75	0	.	1026
ROS1	6098	hgsc.bcm.edu	37	6	117658467	117658619	+	Frame_Shift_Del	DEL	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	ATGAAGTTTTAACATGGTAAAACTCATTGTATTTCCACTAGAAAAAGAAGTCTCGATTAATATTTTTGTTTCTCTAAGAAAATATTCTTAAAACACAAAAATGTATAGGCTTATAGCAAGTGGTTAAAATTTAAGCATTCTTTTCTATTAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ROS1	NM_002944	exon31	c.5080_5116del	p.1694_1706del	.	.	42	0	69	0	.	1353
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	55533949	55533949	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	RP1	NM_006269	exon2	c.C423T	p.P141P	.	.	109	25	47	0	.	102
RTN4RL1	146760	ucsc.edu	37	17	1840357	1840357	+	Silent	SNP	G	G	A	rs74644325	byfrequency	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_178568	exon2	c.C759T	p.N253N	.	.	23	6	15	0	G|0.954;A|0.046	.
SAR1B	51128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133945276	133945276	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SAR1B	NM_001033503	exon6	c.A333T	p.S111S	.	.	78	29	94	0	.	227
SBF1P1	100133234	ucsc.edu	37	8	56363265	56363265	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	.	.	.	35	4	18	0	.	.
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139371483	139371483	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_014866	exon3	c.G585T	p.V195V	.	.	52	24	54	0	.	.
SEMA5B	54437	broad.mit.edu	37	3	122629874	122629874	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SEMA5B	NM_001256347	exon22	c.T3272G	p.L1091W	.	.	47	4	69	0	.	157
SESN2	83667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28595721	28595721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SESN2	NM_031459	exon2	c.G118A	p.G40S	.	.	30	9	50	0	.	230
SFRP2	6423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	154709533	154709533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SFRP2	NM_003013	exon1	c.G455T	p.C152F	.	.	57	25	60	0	.	659
SHOX	6473	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	595367	595368	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SHOX	NM_000451	exon3	c.292_293del	p.98_98del	.	.	74	22	122	0	.	40
SLC12A2	6558	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127466833	127466833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SLC12A2	NM_001046	exon5	c.G1123T	p.A375S	.	.	123	48	208	1	.	94
SLC38A10	124565	ucsc.edu	37	17	79225189	79225189	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SLC38A10	NM_138570	exon14	c.G2169A	p.R723R	.	.	39	4	38	0	.	70
SLC9C2	284525	broad.mit.edu	37	1	173552678	173552678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_178527	exon6	c.C607T	p.R203W	.	.	410	7	271	1	.	.
SLCO2A1	6578	broad.mit.edu;bcgsc.ca	37	3	133673920	133673920	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SLCO2A1	NM_005630	exon4	c.T515C	p.L172P	.	.	106	5	96	0	.	90
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55844336	55844336	+	Missense_Mutation	SNP	G	G	A	rs200421664	byfrequency	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SMEK2	NM_001122964	exon1	c.C86T	p.S29F	.	.	69	23	104	0	G|0.997;A|0.003	228
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25222974	25222974	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SNRPN	NM_022807	exon11	c.C470A	p.A157E	.	.	39	14	47	0	.	469
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	157053726	157053726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SOX30	NM_007017	exon4	c.A1391G	p.H464R	.	.	48	17	39	0	.	91
SPATA31C1	441452	bcgsc.ca;mdanderson.org	37	9	90537352	90537352	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001145124	exon4	c.C2530G	p.P844A	.	.	245	66	293	1	.	.
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9101941	9101941	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SRGAP3	NM_014850	exon6	c.A775C	p.I259L	.	.	83	33	103	0	.	344
SRSF12	135295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	89827583	89827583	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SRSF12	NM_080743	exon1	c.C24T	p.P8P	.	.	98	43	76	0	.	90
STMN4	81551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	27099966	27099966	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STMN4	NM_030795	exon3	c.C57T	p.F19F	.	.	47	29	56	0	.	154
STOX2	56977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	184931082	184931082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	STOX2	NM_020225	exon3	c.G1091A	p.R364Q	.	.	47	21	89	0	.	22
SUSD2	56241	broad.mit.edu;bcgsc.ca	37	22	24583365	24583365	+	Missense_Mutation	SNP	G	G	T	rs141759016	byfrequency;alternate_allele	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SUSD2	NM_019601	exon11	c.G1838T	p.R613L	.	.	45	4	52	0	G|0.999;A|0.001	91
SYNE1	23345	ucsc.edu;bcgsc.ca	37	6	152757118	152757118	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	SYNE1	NM_033071	exon33	c.T4289A	p.I1430N	.	.	108	43	145	3	.	607
TAL2	6887	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	108425042	108425042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TAL2	NM_005421	exon1	c.G265T	p.D89Y	.	.	76	36	91	1	.	636
TBC1D2B	23102	hgsc.bcm.edu	37	15	78369972	78369972	+	Missense_Mutation	SNP	G	G	C	rs7176425		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TBC1D2B	NM_144572	exon1	c.C23G	p.A8G	.	.	7	5	0	0	G|0.519;C|0.481	136
TBP	6908	mdanderson.org	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TBP	NM_003194	exon3	c.A189G	p.Q63Q	.	.	36	6	44	0	.	91
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55881125	55881125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TBPL2	NM_199047	exon7	c.C1100A	p.P367H	.	.	39	16	97	0	.	90
TEKT1	83659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6718550	6718550	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TEKT1	NM_053285	exon5	c.C561A	p.I187I	.	.	122	6	158	0	.	92
TIAM2	26230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155498070	155498070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TIAM2	NM_012454	exon9	c.C2482T	p.P828S	.	.	72	30	71	0	.	93
TMEM158	25907	hgsc.bcm.edu	37	3	45267058	45267058	+	Silent	SNP	G	G	A	rs33750	byfrequency;by1000genomes	TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_015444	exon1	c.C462T	p.T154T	.	.	6	6	0	0	G|0.623;A|0.377	.
TNFRSF4	7293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	1148033	1148033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TNFRSF4	NM_003327	exon4	c.G422T	p.C141F	.	.	47	18	35	0	.	227
TNIP1	10318	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150441768	150441768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TNIP1	NM_001252385	exon4	c.G277T	p.D93Y	.	.	60	28	80	1	.	91
TONSL	4796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145660436	145660436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TONSL	NM_013432	exon19	c.G2970C	p.Q990H	.	.	106	26	59	0	.	92
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	32543636	32543636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TOPORS	NM_005802	exon3	c.T887C	p.L296S	.	.	35	9	31	0	.	230
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	1459934	1459934	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TPO	NM_175719	exon7	c.G699A	p.W233X	.	.	71	22	101	0	.	332
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202254174	202254174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TRAK2	NM_015049	exon12	c.G1246A	p.G416S	.	.	60	14	47	0	.	90
TRANK1	9881	broad.mit.edu	37	3	36874562	36874562	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TRANK1	NM_014831	exon21	c.A6380T	p.H2127L	.	.	127	5	130	1	.	24
TSKU	25987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76506706	76506706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TSKU	NM_015516	exon2	c.A46G	p.T16A	.	.	29	10	36	0	.	90
TTN	7273	broad.mit.edu	37	2	179537178	179537178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	TTN	NM_001267550	exon154	c.A34886G	p.K11629R	.	.	125	4	198	0	.	636
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234442150	234442150	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP40	NM_018218	exon10	c.A1479G	p.K493K	.	.	107	26	123	0	.	455
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41002598	41002598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	USP9X	NM_001039591	exon10	c.C1216G	p.Q406E	.	.	179	129	165	0	.	563
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816091	82816091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	VCAN	NM_004385	exon7	c.T1966C	p.F656L	.	.	60	19	89	0	.	238
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168102933	168102933	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	XIRP2	NM_152381	exon9	c.C5031T	p.I1677I	.	.	163	32	189	0	.	104
XYLT1	64131	ucsc.edu	37	16	17292250	17292250	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	XYLT1	NM_022166	exon5	c.C1108T	p.Q370X	.	.	36	4	60	0	.	94
ZC3H7A	29066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11859416	11859416	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZC3H7A	NM_014153	exon14	c.A1648T	p.N550Y	.	.	38	13	59	0	.	94
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68274609	68274609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZFYVE26	NM_015346	exon5	c.C392T	p.A131V	.	.	62	27	89	0	.	162
ZNF217	7764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	52198188	52198188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF217	NM_006526	exon1	c.A1178G	p.H393R	.	.	63	26	79	0	.	723
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53612297	53612297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF415	NM_018355	exon4	c.G1001C	p.G334A	.	.	39	12	45	0	.	91
ZNF695	57116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247150556	247150556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_020394	exon4	c.T1261C	p.S421P	.	.	59	15	34	0	.	.
ZNF718	255403	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	59395	59395	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	NM_001039127	exon2	c.C76T	p.Q26X	.	.	226	13	268	0	.	.
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	57766654	57766654	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZNF831	NM_178457	exon1	c.C580T	p.Q194X	.	.	26	9	49	0	.	126
ZXDC	79364	hgsc.bcm.edu	37	3	126194357	126194357	+	Missense_Mutation	SNP	G	G	C	rs7624748		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	ZXDC	NM_025112	exon1	c.C352G	p.P118A	.	.	9	9	0	0	G|0.098;C|0.902	91
HGS	9146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79661868	79661869	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	p.ED320DH	.	.	.	.	.	.	.	
PRG4	10216	bcgsc.ca	37	1	186276282	186276283	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	p.T478A	.	.	.	.	.	.	.	
HSPA9	3313	hgsc.bcm.edu	37	5	137902698	137902699	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-MI-A75C-01A-11D-A32G-10	TCGA-MI-A75C-10A-01D-A32G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea50cd47-c60a-4696-bd52-1e5fd735adad	95a91613-2d3d-4a43-a127-c826c46835e9	.	.	.	.	.	p.FK290LQ	.	.	.	.	.	.	.	
