Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48278858	48278858	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ABCA13	NM_152701	exon9	c.G918T	p.L306F	.	.	56	19	60	1	.	521
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150531864	150531864	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ADAMTSL4	NM_019032	exon17	c.C2865G	p.H955Q	.	.	97	18	75	0	.	92
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759514	8759514	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AICDA	NM_020661	exon2	c.A103T	p.R35W	.	.	47	14	81	0	.	229
ALK	238	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	30143210	30143210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALK	NM_004304	exon1	c.C316T	p.P106S	.	.	24	5	33	0	.	3833
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu	37	2	233274441	233274441	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ALPPL2	NM_031313	exon11	c.1458delC	p.C486fs	.	.	41	15	29	0	.	91
AMPH	273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	38670937	38670937	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMPH	NM_139316	exon1	c.G15T	p.K5N	.	.	46	17	30	0	.	95
AMZ2	51321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	66246521	66246521	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	AMZ2	NM_001033574	exon2	c.G193T	p.E65X	.	.	108	19	115	0	.	22
APCDD1	147495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	10488026	10488026	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCDD1	NM_153000	exon5	c.C1536A	p.I512I	.	.	33	14	34	1	.	90
APCS	325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159558103	159558103	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	APCS	NM_001639	exon2	c.T277C	p.Y93H	.	.	73	18	52	0	.	154
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145780976	145780976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARHGAP39	NM_025251	exon5	c.T564A	p.D188E	.	.	129	25	101	0	.	90
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	149677632	149677632	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ARSI	NM_001012301	exon2	c.T855C	p.G285G	.	.	64	27	80	0	.	92
ASCC3	10973	mdanderson.org	37	6	101253744	101253744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ASCC3	NM_006828	exon5	c.C814A	p.L272M	.	.	18	3	46	0	.	96
ASPSCR1	79058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	79974909	79974909	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ASPSCR1	NM_001251888	exon16	c.T1850A	p.V617D	.	.	33	14	54	0	.	877
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	42583637	42583637	+	Splice_Site	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ATP8A1	NM_001105529	exon11	c.834+1G>T	.	.	.	65	30	70	0	.	92
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123664403	123664404	+	Frame_Shift_Ins	INS	-	-	CAGG	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BBS12	NM_001178007	exon3	c.1356_1357insCAGG	p.V452fs	.	.	84	25	119	0	.	92
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51693401	51693401	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BIN2	NM_016293	exon6	c.A506T	p.K169M	.	.	40	13	58	0	.	91
BMP4	652	broad.mit.edu	37	14	54418919	54418919	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BMP4	NM_130851	exon3	c.C22A	p.L8M	.	.	64	5	56	0	.	658
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	34192707	34192707	+	Missense_Mutation	SNP	C	C	T	rs143727756		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BMPER	NM_133468	exon16	c.C1880T	p.T627I	.	.	97	37	84	0	C|1.000;T|0.000	92
BPNT1	10380	ucsc.edu	37	1	220231330	220231330	+	RNA	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BPNT1	.	.	.	.	.	.	98	1	71	0	.	91
BRDT	676	broad.mit.edu	37	1	92469982	92469982	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	BRDT	NM_001242806	exon17	c.T2412G	p.I804M	.	.	310	7	334	0	.	374
CA10	56934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	50235089	50235089	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CA10	NM_001082534	exon2	c.T58C	p.S20P	.	.	78	32	109	0	.	516
CAMK2B	816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	44281927	44281927	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CAMK2B	NM_172081	exon10	c.G709T	p.E237X	.	.	68	28	75	0	.	334
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103383301	103383301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001146197	exon4	c.G19746C	p.K6582N	.	.	136	48	167	0	.	.
CCR9	10803	broad.mit.edu	37	3	45942975	45942975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CCR9	NM_031200	exon3	c.G695T	p.C232F	.	.	106	7	95	3	.	660
CCT6P1	643253	broad.mit.edu	37	7	65226641	65226641	+	RNA	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	188	4	210	1	.	.
CDK13	8621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	40027408	40027408	+	Silent	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDK13	NM_003718	exon2	c.A1422C	p.A474A	.	.	99	40	105	0	.	548
CDRT1	374286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	15508540	15508541	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CDRT1	NM_006382	exon7	c.1429_1430del	p.477_477del	.	.	348	0	380	0	.	68
CLEC3B	7123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45077186	45077186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CLEC3B	NM_003278	exon3	c.A379T	p.N127Y	.	.	46	19	52	0	.	90
CNTFR	1271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	34552230	34552230	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CNTFR	NM_147164	exon9	c.C1047A	p.P349P	.	.	23	10	32	0	.	518
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103428289	103428289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	COL11A1	NM_080629	exon39	c.G2980A	p.G994R	.	.	186	57	195	0	.	586
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29160618	29160618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CPVL	NM_019029	exon2	c.T60C	p.C20C	.	.	105	34	144	0	.	92
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu	37	17	43911988	43911988	+	Splice_Site	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CRHR1	NM_001256299	exon15	c.583-2A>T	.	.	.	23	4	22	0	.	522
CSRNP3	80034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	166533005	166533005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	CSRNP3	NM_001172173	exon6	c.G592A	p.E198K	.	.	87	29	91	0	.	157
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	.	.	179	61	183	1	.	24361
DCAF4L1	285429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	41984018	41984018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCAF4L1	NM_001029955	exon1	c.C209T	p.A70V	.	.	149	64	181	1	.	23
DCHS2	54798	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155264728	155264728	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon7	c.A871G	p.K291E	.	.	34	12	29	1	.	94
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155157921	155157921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DCHS2	NM_017639	exon25	c.G6518A	p.S2173N	.	.	69	29	68	0	.	94
DDC	1644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50595913	50595913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DDC	NM_001082971	exon6	c.T636A	p.D212E	.	.	81	28	79	0	.	92
DDX60L	91351	broad.mit.edu	37	4	169336559	169336559	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DDX60L	NM_001012967	exon22	c.T2979A	p.I993I	.	.	252	6	261	0	.	69
DIP2A	23181	broad.mit.edu	37	21	47970552	47970552	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DIP2A	NM_015151	exon23	c.G2734T	p.E912X	.	.	77	4	100	1	.	24
DMP1	1758	broad.mit.edu;bcgsc.ca	37	4	88584445	88584445	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DMP1	NM_004407	exon6	c.T1515C	p.D505D	.	.	62	5	81	0	.	132
DNM3	26052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172017769	172017769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DNM3	NM_001136127	exon10	c.C1214A	p.P405Q	.	.	229	100	190	0	.	90
DPP6	1804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	154593130	154593130	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	DPP6	NM_130797	exon13	c.A1365T	p.G455G	.	.	70	15	55	0	.	652
EIF4H	7458	bcgsc.ca	37	7	73588659	73588659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	EIF4H	.	.	.	.	.	.	144	38	114	1	.	90
ELANE	1991	hgsc.bcm.edu	37	19	855988	855988	+	Missense_Mutation	SNP	G	G	T	rs140880838	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ELANE	NM_001972	exon5	c.G628T	p.G210W	.	.	67	4	62	0	G|1.000;A|0.000	91
ERAP2	64167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96232185	96232185	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ERAP2	NM_001130140	exon8	c.T1348C	p.F450L	.	.	200	63	233	0	.	68
EXTL3	2137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28575255	28575255	+	Missense_Mutation	SNP	C	C	T	rs200494893		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	EXTL3	NM_001440	exon3	c.C1679T	p.A560V	.	.	35	16	78	0	C|0.999;T|0.001	92
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45521641	45521641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM179B	NM_015091	exon14	c.A4157G	p.Y1386C	.	.	53	17	75	0	.	93
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	18874756	18874756	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FAM83G	NM_001039999	exon6	c.A2388G	p.L796L	.	.	57	12	60	0	.	69
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10102063	10102063	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FANCD2	NM_001018115	exon19	c.T1742C	p.M581T	.	.	64	26	61	0	.	229
FBLN1	2192	broad.mit.edu	37	22	45972872	45972872	+	Missense_Mutation	SNP	G	G	T	rs11557534		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FBLN1	NM_006486	exon16	c.G1856T	p.R619L	.	.	50	3	62	0	.	515
FBN3	84467	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8167618	8167618	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FBN3	NM_032447	exon39	c.T5079C	p.T1693T	.	.	56	21	63	1	.	100
FGA	2243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	155507134	155507134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FGA	NM_000508	exon5	c.G1447A	p.V483M	.	.	100	33	140	0	.	93
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79391155	79391155	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FRAS1	NM_025074	exon51	c.G7281A	p.P2427P	.	.	67	22	82	0	.	68
FSIP2	401024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186670429	186670429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	FSIP2	NM_173651	exon17	c.A16663G	p.R5555G	.	.	76	25	87	1	.	90
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161118965	161118965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GABRA6	NM_000811	exon8	c.C845A	p.T282N	.	.	71	25	63	0	.	163
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88411981	88411981	+	Missense_Mutation	SNP	G	G	A	rs200960659		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GALC	NM_000153	exon14	c.C1586T	p.T529M	.	.	139	46	139	0	.	90
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128064751	128064751	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GAPVD1	NM_015635	exon3	c.G675T	p.R225S	.	.	54	25	55	0	.	93
GIMAP1-GIMAP5	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150440117	150440117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001199577	exon6	c.T1502C	p.F501S	.	.	51	12	80	0	.	.
GLB1L	79411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	220102300	220102300	+	Nonsense_Mutation	SNP	G	G	T	rs183755555	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GLB1L	NM_024506	exon16	c.C1623A	p.Y541X	.	.	119	35	113	0	G|0.999;A|0.001	90
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220370193	220370193	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPPA	NM_205847	exon9	c.G769A	p.A257T	.	.	72	17	82	0	.	90
GMPS	8833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155640077	155640077	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GMPS	NM_003875	exon11	c.G1420T	p.A474S	.	.	420	139	492	2	.	229
GOLGA8A	23015	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34673744	34673744	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_181077	exon16	c.G1680A	p.Q560Q	.	.	270	37	303	0	.	.
GOLGA8B	440270	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	34819965	34819965	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001023567	exon16	c.G1680A	p.Q560Q	.	.	202	26	202	0	.	.
GRIN1	2902	broad.mit.edu;mdanderson.org	37	9	140056377	140056377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	GRIN1	NM_001185091	exon12	c.T1532C	p.V511A	.	.	21	4	37	0	.	187
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19369444	19369444	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAPLN4	NM_023002	exon4	c.G705A	p.G235G	.	.	48	21	42	0	.	91
HAUS6	54801	broad.mit.edu;mdanderson.org	37	9	19058467	19058467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HAUS6	NM_017645	exon16	c.G2298T	p.K766N	.	.	167	43	184	1	.	92
HEPH	9843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	65408258	65408258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HEPH	NM_138737	exon5	c.T845C	p.L282P	.	.	100	68	128	1	.	135
HERC2P3	283755	broad.mit.edu;bcgsc.ca	37	15	20644207	20644207	+	RNA	SNP	G	G	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HERC2P3	.	.	.	.	.	.	184	53	233	0	.	92
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	75368213	75368213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HIP1	NM_005338	exon1	c.A26C	p.K9T	.	.	31	13	45	0	.	1085
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	177637219	177637219	+	Missense_Mutation	SNP	G	G	T	rs115721462	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HNRNPAB	NM_031266	exon7	c.G874T	p.G292C	.	.	52	18	78	0	G|0.999;A|0.001	22
HOXC9	3225	broad.mit.edu	37	12	54394466	54394466	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HOXC9	NM_006897	exon1	c.T494A	p.L165H	.	.	20	6	12	0	.	155
HRNR	388697	broad.mit.edu	37	1	152187705	152187705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HRNR	NM_001009931	exon3	c.G6400A	p.G2134R	.	.	540	30	354	0	.	93
HTRA1	5654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124273831	124273831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	HTRA1	NM_002775	exon9	c.G1399A	p.E467K	.	.	110	28	114	0	.	90
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155233487	155233487	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	IL9R	NM_176786	exon5	c.C534T	p.A178A	.	.	121	38	113	0	.	40
INTS4	92105	broad.mit.edu	37	11	77618766	77618766	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	INTS4	NM_033547	exon16	c.C2013A	p.I671I	.	.	59	3	81	0	.	92
ITGB6	3694	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	161029224	161029224	+	Silent	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ITGB6	NM_000888	exon6	c.G777T	p.R259R	.	.	55	19	61	0	.	227
KCNA1	3736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	5020766	5020766	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNA1	NM_000217	exon2	c.222delC	p.D74fs	.	.	65	22	63	0	.	228
KCNIP1	30820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170160865	170160865	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNIP1	NM_001034837	exon8	c.T599C	p.I200T	.	.	45	11	46	0	.	92
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2718181	2718181	+	Missense_Mutation	SNP	G	G	A	rs140256288		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KCNV2	NM_133497	exon1	c.G442A	p.E148K	.	.	113	38	163	0	G|1.000;A|0.000	515
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123128393	123128393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1109	NM_015312	exon14	c.G1627A	p.D543N	.	.	165	40	207	0	.	80
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81235392	81235392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1199	NM_018689	exon27	c.T3806G	p.L1269R	.	.	99	34	107	0	.	93
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18375495	18375495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIAA1683	NM_001145304	exon3	c.G2855T	p.R952L	.	.	58	16	49	0	.	92
KIR2DL3	3804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55263136	55263136	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KIR2DL3	NM_015868	exon6	c.T751A	p.S251T	.	.	14	7	22	0	.	92
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86877345	86877345	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	KLHL4	NM_019117	exon5	c.G1059T	p.V353V	.	.	122	83	173	1	.	133
LCE5A	254910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152484038	152484038	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LCE5A	NM_178438	exon2	c.T28C	p.C10R	.	.	106	35	90	0	.	91
LMAN1	3998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	57021788	57021788	+	Missense_Mutation	SNP	T	T	A	rs139797136	byfrequency;alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LMAN1	NM_005570	exon4	c.A502T	p.I168L	.	.	77	24	76	0	T|1.000;C|0.000	91
LOC283922	0	bcgsc.ca	37	16	74372609	74372609	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	69	6	77	0	.	.
LOC642423	0	broad.mit.edu	37	15	85747441	85747441	+	RNA	SNP	A	A	G	rs76853327	byfrequency	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	12	5	10	0	A|0.500;G|0.500	.
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170072882	170072882	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRP2	NM_004525	exon35	c.G5707A	p.A1903T	.	.	144	44	140	0	.	175
LRRC31	79782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169565966	169565966	+	Silent	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRC31	NM_024727	exon8	c.G1269A	p.S423S	.	.	48	24	65	0	.	93
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85450884	85450884	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LRRIQ1	NM_001079910	exon8	c.G2313A	p.V771V	.	.	155	61	193	0	.	95
LZTS2	84445	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102763425	102763425	+	Silent	SNP	C	C	T	rs139556482	byfrequency	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	LZTS2	NM_032429	exon3	c.C570T	p.S190S	.	.	28	10	33	0	C|0.999;T|0.001	155
MAB21L1	4081	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	36049446	36049446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MAB21L1	NM_005584	exon1	c.T830C	p.L277P	.	.	142	40	169	1	.	92
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	149227546	149227546	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MBD5	NM_018328	exon9	c.T2034C	p.S678S	.	.	58	13	61	0	.	95
MCOLN2	255231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85403450	85403450	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MCOLN2	NM_153259	exon11	c.A1323C	p.P441P	.	.	77	26	82	0	.	94
MECOM	2122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	168838896	168838896	+	Silent	SNP	C	C	A	rs185054275	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MECOM	NM_004991	exon7	c.G1080T	p.S360S	.	.	68	30	81	0	C|0.999;T|0.001	853
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	151860694	151860694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLL3	NM_170606	exon43	c.A9968C	p.H3323P	.	.	158	56	187	0	.	1398
MLLT1	4298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	6226990	6226990	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLLT1	NM_005934	exon5	c.A544T	p.K182X	.	.	110	28	132	0	.	658
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2256124	2256124	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MLST8	NM_001199174	exon2	c.T38C	p.V13A	.	.	38	15	57	0	.	392
MOV10	4343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	113231596	113231596	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MOV10	NM_020963	exon3	c.T177C	p.Y59Y	.	.	104	32	105	0	.	95
MRFAP1	93621	broad.mit.edu	37	4	6642828	6642828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001272053	exon2	c.A239G	p.N80S	.	.	156	4	162	0	.	.
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142505463	142505463	+	RNA	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	180	115	135	0	.	.
MRPS16	51021	ucsc.edu	37	10	75008797	75008797	+	RNA	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MRPS16	.	.	.	.	.	.	138	1	164	0	.	90
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085379	9085379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon1	c.C6436T	p.L2146F	.	.	83	29	93	0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9072822	9072822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC16	NM_024690	exon3	c.C14624A	p.S4875X	.	.	267	93	295	0	.	566
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1093298	1093298	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MUC2	NM_002457	exon30	c.C5117T	p.T1706M	.	.	64	8	69	0	.	90
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10408576	10408576	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	MYH1	NM_005963	exon21	c.T2339C	p.M780T	.	.	122	39	116	0	.	171
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	101735199	101735199	+	Silent	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NALCN	NM_052867	exon33	c.A3726C	p.A1242A	.	.	73	32	66	0	.	167
NAP1L2	4674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	72434298	72434298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NAP1L2	NM_021963	exon1	c.T31C	p.S11P	.	.	119	86	135	0	.	130
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	30	5	17	0	C|0.500;T|0.500	.
NLRP1	22861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	5462324	5462325	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP1	NM_014922	exon4	c.1692_1693insT	p.L564fs	.	.	107	37	137	0	.	274
NLRP12	91662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54301639	54301639	+	Missense_Mutation	SNP	C	C	T	rs146368839		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP12	NM_144687	exon8	c.G2785A	p.G929S	.	.	119	48	82	0	C|0.998;T|0.002	211
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56485050	56485050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NLRP8	NM_176811	exon7	c.G2567T	p.C856F	.	.	112	27	76	1	.	361
NOC4L	79050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	132636050	132636050	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOC4L	NM_024078	exon12	c.G1095A	p.V365V	.	.	23	11	26	0	.	90
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15280956	15280956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NOTCH3	NM_000435	exon28	c.A5140T	p.M1714L	.	.	72	29	95	0	.	855
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	37351407	37351407	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	NUP155	NM_153485	exon6	c.A608G	p.D203G	.	.	123	39	170	0	.	205
OAS3	4940	broad.mit.edu	37	12	113384679	113384679	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OAS3	NM_006187	exon4	c.G768T	p.L256L	.	.	86	5	79	1	.	1
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228481978	228481978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSCN	NM_001271223	exon47	c.A12544G	p.R4182G	.	.	127	36	145	0	.	403
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220422736	220422736	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OBSL1	NM_001173431	exon11	c.C3599T	p.A1200V	.	.	46	12	47	0	.	71
OR52B4	143496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4388835	4388835	+	Missense_Mutation	SNP	G	G	A	rs200224336		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OR52B4	NM_001005161	exon1	c.C691T	p.P231S	.	.	73	31	91	0	G|0.999;A|0.001	90
OR6K3	391114	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158687493	158687493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	OR6K3	NM_001005327	exon1	c.C413T	p.P138L	.	.	129	58	85	0	.	70
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568990	55568990	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDH15	.	.	.	.	.	.	123	39	133	0	.	193
PCDHGB1	56104	hgsc.bcm.edu;broad.mit.edu	37	5	140730776	140730776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PCDHGB1	NM_018922	exon1	c.G949T	p.A317S	.	.	84	4	106	0	.	33
PHF10	55274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170114882	170114882	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PHF10	NM_018288	exon7	c.C750A	p.V250V	.	.	76	38	126	0	.	226
PKDREJ	10343	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46655628	46655628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKDREJ	NM_006071	exon1	c.G3592A	p.V1198M	.	.	71	16	60	2	.	156
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	159526346	159526346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PKP4	NM_001005476	exon17	c.A2843G	p.K948R	.	.	139	44	157	0	.	97
PMS2CL	441194	broad.mit.edu;ucsc.edu	37	7	6777095	6777095	+	RNA	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	60	22	41	0	.	.
POTEC	388468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14511960	14511960	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	POTEC	NM_001137671	exon11	c.C1566T	p.L522L	.	.	608	183	756	0	.	3
PPDPF	79144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	62153144	62153144	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PPDPF	NM_024299	exon4	c.G257A	p.S86N	.	.	52	21	51	0	.	90
PRSS38	339501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228004984	228004984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PRSS38	NM_183062	exon3	c.G386T	p.W129L	.	.	84	40	71	0	.	92
PTPRU	10076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	29609329	29609329	+	Silent	SNP	G	G	C	rs142462225	alternate_allele	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PTPRU	NM_133177	exon12	c.G2010C	p.A670A	.	.	60	21	63	0	G|1.000;A|0.000	291
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51390766	51390766	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	PYGL	NM_002863	exon5	c.G581T	p.R194L	.	.	110	34	140	0	.	91
REEP1	65055	bcgsc.ca	37	2	86479176	86479176	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	REEP1	NM_001164730	exon5	c.G342A	p.L114L	.	.	36	4	34	0	.	90
RNU6-71	100873774	broad.mit.edu	37	6	56510671	56510671	+	RNA	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	317	7	151	0	.	.
ROBO1	6091	broad.mit.edu	37	3	78710241	78710241	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ROBO1	NM_002941	exon16	c.T2259C	p.P753P	.	.	135	6	154	2	.	67
RRP7B	91695	broad.mit.edu	37	22	42970745	42970745	+	RNA	SNP	G	G	C	rs137060	byfrequency;by1000genomes	TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	101	5	106	2	G|0.835;C|0.165	.
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33872221	33872221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	RYR3	NM_001243996	exon13	c.A1313G	p.E438G	.	.	134	41	167	0	.	520
SAAL1	113174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	18105155	18105155	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SAAL1	NM_138421	exon10	c.1166delA	p.D389fs	.	.	201	66	196	0	.	90
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	9868632	9868632	+	Splice_Site	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SBF2	NM_030962	exon24	c.2807-2A>G	.	.	.	159	52	195	0	.	93
SCNM1	79005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151139457	151139457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SCNM1	NM_024041	exon3	c.C170T	p.A57V	.	.	80	20	67	0	.	94
SEC22B	9554	broad.mit.edu;bcgsc.ca	37	1	145109584	145109584	+	RNA	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	.	.	.	486	38	357	0	.	.
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81965951	81965953	+	Frame_Shift_Del	DEL	ACC	ACC	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SEL1L	NM_001244984	exon7	c.831_831del	p.277_277del	.	.	151	30	213	0	.	227
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	51113571	51113571	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SHANK3	NM_033517	exon2	c.T159C	p.Y53Y	.	.	32	24	29	0	.	69
SIGLEC9	27180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51633221	51633221	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SIGLEC9	NM_014441	exon7	c.T1277C	p.V426A	.	.	137	29	76	0	.	91
SLCO1B1	10599	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	21325651	21325651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLCO1B1	NM_006446	exon3	c.C152A	p.S51Y	.	.	118	48	136	1	.	97
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	57898307	57898307	+	Silent	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SLMAP	NM_007159	exon17	c.T1797A	p.L599L	.	.	40	18	53	0	.	90
SNTG1	54212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	51617237	51617237	+	Silent	SNP	G	G	A	rs189241890		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SNTG1	NM_018967	exon16	c.G1116A	p.V372V	.	.	76	14	48	0	G|0.999;A|0.000	95
SOST	50964	hgsc.bcm.edu	37	17	41832903	41832903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SOST	NM_025237	exon2	c.G449A	p.G150D	.	.	12	5	4	0	.	90
SPRY3	10251	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	155003829	155003829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SPRY3	NM_005840	exon2	c.T296C	p.L99P	.	.	167	65	164	1	.	136
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48125757	48125757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SSX1	NM_005635	exon7	c.C502A	p.L168M	.	.	216	170	238	0	.	522
STK33	65975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	8457664	8457664	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK33	NM_030906	exon11	c.T970C	p.L324L	.	.	88	32	123	0	.	337
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36809505	36809505	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STK40	NM_032017	exon10	c.C960T	p.A320A	.	.	86	33	95	0	.	83
STPG2	285555	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	98893569	98893569	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_174952	exon7	c.G795A	p.L265L	.	.	300	97	295	1	.	.
STPG2	285555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	98902423	98902423	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_174952	exon6	c.A659T	p.N220I	.	.	83	28	125	0	.	.
STRADB	55437	broad.mit.edu	37	2	202342489	202342489	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	STRADB	NM_001206864	exon8	c.G696A	p.W232X	.	.	113	4	137	0	.	522
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	70551048	70551048	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	SULF1	NM_001128205	exon21	c.C2506T	p.Q836X	.	.	333	72	205	0	.	518
TAF1L	138474	ucsc.edu	37	9	32631204	32631204	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TAF1L	NM_153809	exon1	c.C4374A	p.Y1458X	.	.	312	116	359	2	.	870
TCEB3C	162699	broad.mit.edu;bcgsc.ca	37	18	44555325	44555325	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TCEB3C	NM_145653	exon1	c.C889A	p.P297T	.	.	451	17	524	2	.	68
TENM4	26011	bcgsc.ca	37	11	78413217	78413217	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001098816	exon28	c.4441delC	p.L1481fs	.	.	82	25	77	1	.	.
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73944310	73944310	+	Silent	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TERF1	NM_017489	exon8	c.A981G	p.Q327Q	.	.	180	106	116	0	.	228
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	70333914	70333914	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TET1	NM_030625	exon2	c.A1819G	p.T607A	.	.	37	14	44	0	.	663
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90159653	90159653	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_152259	exon16	c.A2887T	p.T963S	.	.	56	20	94	0	.	.
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	126068404	126068404	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM132B	NM_052907	exon5	c.A1286T	p.E429V	.	.	45	15	43	0	.	185
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	42519078	42519078	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TMEM87A	NM_015497	exon15	c.C1329T	p.A443A	.	.	45	14	54	0	.	91
TNK2	10188	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	195609177	195609177	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TNK2	NM_001010938	exon6	c.G821T	p.G274V	.	.	127	36	131	1	.	957
TOP2B	7155	broad.mit.edu	37	3	25651148	25651148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TOP2B	NM_001068	exon29	c.C3827A	p.A1276E	.	.	111	4	128	0	.	273
TPTE	7179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10942966	10942966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TPTE	NM_199261	exon12	c.T621A	p.H207Q	.	.	572	99	695	0	.	344
TREML1	340205	broad.mit.edu;bcgsc.ca	37	6	41121665	41121665	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TREML1	NM_178174	exon2	c.C207T	p.R69R	.	.	215	8	137	0	.	153
TRPC6	7225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	101375213	101375213	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPC6	NM_004621	exon2	c.487delG	p.D163fs	.	.	71	21	70	0	.	93
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77442785	77442785	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TRPM6	NM_017662	exon7	c.G750A	p.L250L	.	.	85	28	111	0	.	335
TSPAN31	6302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58140038	58140038	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TSPAN31	NM_005981	exon3	c.A311C	p.Q104P	.	.	118	40	134	0	.	446
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179432581	179432581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon326	c.G78278A	p.G26093E	.	.	112	40	120	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179554080	179554080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_001267550	exon124	c.A31948C	p.K10650Q	.	.	106	35	106	0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179614607	179614607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TTN	NM_133379	exon46	c.G12520T	p.D4174Y	.	.	151	59	154	0	.	636
TUBGCP3	10426	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	113210371	113210371	+	Missense_Mutation	SNP	G	G	A	rs186110739		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	TUBGCP3	NM_006322	exon6	c.C716T	p.T239M	.	.	74	24	88	1	G|0.999;A|0.000	90
UBE2H	7328	broad.mit.edu	37	7	129520739	129520739	+	Silent	SNP	T	T	C	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	UBE2H	NM_182697	exon2	c.A126G	p.Q42Q	.	.	102	3	134	0	.	226
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	100452950	100452950	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	UHRF1BP1L	NM_015054	exon14	c.G2105A	p.W702X	.	.	135	46	135	0	.	24
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12375836	12375836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	VWDE	NM_001135924	exon27	c.G4585T	p.G1529C	.	.	158	45	144	0	.	68
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168115372	168115372	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	XIRP2	NM_001199143	exon11	c.G2415A	p.S805S	.	.	143	47	138	0	.	104
ZBP1	81030	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	56179629	56179629	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZBP1	NM_030776	exon8	c.G1290A	p.X430X	.	.	50	12	50	0	.	228
ZKSCAN7	55888	broad.mit.edu	37	3	44611598	44611598	+	Silent	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_018651	exon6	c.C996T	p.S332S	.	.	110	4	119	0	.	.
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	40735691	40735691	+	Silent	SNP	G	G	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZMPSTE24	NM_005857	exon5	c.G519T	p.V173V	.	.	208	60	208	0	.	226
ZNF417	147687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58419943	58419943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF417	NM_152475	exon3	c.G1703A	p.S568N	.	.	346	66	185	0	.	90
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	44762400	44762400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF502	NM_001134440	exon4	c.G91A	p.D31N	.	.	100	36	107	0	.	90
ZNF536	9745	hgsc.bcm.edu	37	19	30935240	30935240	+	Silent	SNP	G	G	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF536	NM_014717	exon2	c.G771A	p.S257S	.	.	11	5	7	0	.	144
ZNF737	100129842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20736517	20736517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF737	NM_001159293	exon2	c.T128C	p.L43P	.	.	399	162	442	0	.	1
ZNF813	126017	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53995183	53995183	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZNF813	NM_001004301	exon4	c.T1697A	p.L566H	.	.	168	34	128	1	.	67
ZNF841	284371	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52570807	52570807	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_001136499	exon7	c.G328A	p.G110R	.	.	292	38	188	1	.	.
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53854549	53854549	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A621T	p.E207D	.	.	194	35	172	0	.	.
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	53856524	53856524	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	NM_138374	exon4	c.A2596T	p.K866X	.	.	173	37	86	0	.	.
ZXDA	7789	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	X	57936473	57936473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	ZXDA	NM_007156	exon1	c.A382C	p.S128R	.	.	9	8	8	0	.	131
KRTAP1-5	83895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39183121	39183122	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-MI-A75H-01A-11D-A32G-10	TCGA-MI-A75H-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2f0c1405-3730-4b0c-a6c4-679e1bd0c6cf	9804bf31-f0fd-4531-bca1-3ac172fc2b29	.	.	.	.	.	p.G96F	.	.	.	.	.	.	.	
