Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ACAP3	116983	broad.mit.edu;bcgsc.ca	37	1	1230901	1230901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ACAP3	NM_030649	exon19	c.C1739T	p.S580F	.	.	133	5	104	0	.	90
AHDC1	27245	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	27875598	27875598	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	AHDC1	NM_001029882	exon6	c.C3029A	p.A1010D	.	.	37	4	27	0	.	90
AHNAK2	113146	broad.mit.edu	37	14	105419527	105419527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	AHNAK2	NM_138420	exon7	c.T2261A	p.L754H	.	.	196	5	147	0	.	47
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	94654393	94654393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ARHGAP29	NM_004815	exon15	c.G1681A	p.G561R	.	.	215	9	234	0	.	296
ASPN	54829	hgsc.bcm.edu	37	9	95237024	95237024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ASPN	NM_001193335	exon2	c.G156T	p.E52D	.	.	141	3	102	0	.	514
ATP8A2	51761	broad.mit.edu	37	13	26411350	26411350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ATP8A2	NM_016529	exon29	c.G2804T	p.C935F	.	.	128	3	158	0	.	138
BANK1	55024	broad.mit.edu;bcgsc.ca	37	4	102984242	102984242	+	Missense_Mutation	SNP	G	G	A	rs192793442		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	BANK1	NM_017935	exon13	c.G2159A	p.R720Q	.	.	199	6	169	0	G|0.999;A|0.000	93
CATSPER3	347732	broad.mit.edu;bcgsc.ca	37	5	134332076	134332076	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	CATSPER3	NM_178019	exon3	c.C366T	p.I122I	.	.	265	10	188	0	.	91
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91230460	91230460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_001145065	exon2	c.C1025T	p.A342V	.	.	217	70	191	0	.	.
CELF3	11189	hgsc.bcm.edu	37	1	151679692	151679692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	CELF3	NM_007185	exon8	c.C851A	p.P284Q	.	.	97	4	75	0	.	91
COL11A2	1302	bcgsc.ca	37	6	33154431	33154431	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	COL11A2	NM_080681	exon5	c.771delG	p.R257fs	.	.	322	78	269	1	.	95
DDOST	1650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	20980769	20980769	+	Silent	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	DDOST	NM_005216	exon7	c.C792T	p.F264F	.	.	153	48	128	0	.	90
DISP1	84976	broad.mit.edu	37	1	223177823	223177823	+	Silent	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	DISP1	NM_032890	exon10	c.C3084A	p.V1028V	.	.	525	15	453	1	.	68
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	92533065	92533065	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FAT3	NM_001008781	exon9	c.C6886G	p.L2296V	.	.	145	12	159	0	.	73
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164467790	164467790	+	Silent	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FIGN	NM_018086	exon3	c.A552G	p.E184E	.	.	156	18	151	1	.	156
FLNC	2318	broad.mit.edu	37	7	128475630	128475630	+	Splice_Site	SNP	T	T	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	FLNC	NM_001458	exon2	c.601+2T>A	.	.	.	62	3	71	0	.	141
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380477	147380477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	GJA8	NM_005267	exon2	c.G395A	p.S132N	.	.	53	11	52	0	.	138
HIST1H2AK	8330	broad.mit.edu	37	6	27805790	27805790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	HIST1H2AK	NM_003510	exon1	c.C328T	p.P110S	.	.	288	6	233	0	.	91
HTR7	3363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	92616999	92616999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	HTR7	NM_019860	exon1	c.A430G	p.I144V	.	.	306	79	223	0	.	91
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201196307	201196307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	IGFN1	NM_001164586	exon23	c.C11084A	p.A3695E	.	.	127	6	106	0	.	71
IGSF11	152404	broad.mit.edu;bcgsc.ca	37	3	118649028	118649028	+	Silent	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	IGSF11	NM_001015887	exon2	c.C147T	p.S49S	.	.	315	10	297	1	.	90
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70775430	70775430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	KIAA1279	NM_015634	exon7	c.C1124T	p.S375F	.	.	95	37	94	0	.	91
KRTAP4-7	100132476	ucsc.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_033061	exon1	c.T169C	p.S57P	.	.	68	11	38	2	.	.
LDHD	197257	hgsc.bcm.edu	37	16	75146313	75146313	+	Silent	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LDHD	NM_153486	exon11	c.C1465A	p.R489R	.	.	99	4	93	0	.	90
LOC642236	0	bcgsc.ca	37	9	68433548	68433548	+	RNA	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	.	.	.	.	.	.	529	33	548	25	.	.
LOC642236	0	bcgsc.ca	37	9	68433550	68433550	+	RNA	SNP	A	A	G	rs144797473		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	.	.	.	.	.	.	541	33	551	24	.	.
LOC642236	0	bcgsc.ca	37	9	68455187	68455187	+	RNA	SNP	G	G	C	rs201230786		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	.	.	.	.	.	.	63	4	46	0	.	.
LOC642236	0	bcgsc.ca	37	9	68455195	68455195	+	RNA	SNP	A	A	T	rs202017544		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	.	.	.	.	.	.	60	4	43	0	.	.
LOC653712	0	broad.mit.edu;bcgsc.ca	37	3	128580585	128580585	+	RNA	SNP	C	C	A	rs789247	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	.	.	.	.	.	.	252	7	221	2	C|0.658;A|0.342	.
LRFN1	57622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39804840	39804840	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LRFN1	NM_020862	exon1	c.G1137A	p.A379A	.	.	50	20	29	0	.	70
LRRC69	100130742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92212905	92212905	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_001129890	exon7	c.T818C	p.I273T	.	.	298	90	280	0	.	.
LZIC	84328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9995639	9995639	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	LZIC	NM_032368	exon3	c.C148G	p.L50V	.	.	78	28	70	0	.	90
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MUC2	NM_002457	exon30	c.C5131G	p.P1711A	.	.	143	10	99	0	.	90
MUC2	4583	bcgsc.ca	37	11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MUC2	NM_002457	exon30	c.C5194T	p.P1732S	.	.	202	10	146	2	.	90
MUC4	4585	broad.mit.edu	37	3	195515304	195515304	+	Silent	SNP	T	T	A	rs202019266		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MUC4	NM_018406	exon2	c.A3147T	p.A1049A	.	.	280	13	229	3	.	90
MUC6	4588	bcgsc.ca	37	11	1017900	1017900	+	Missense_Mutation	SNP	G	G	T	rs77920671	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MUC6	NM_005961	exon31	c.C4901A	p.P1634H	.	.	1923	69	1590	34	G|0.500;T|0.500	23
MYO18B	84700	broad.mit.edu	37	22	26423563	26423563	+	Silent	SNP	G	G	A	rs202185507		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MYO18B	NM_032608	exon43	c.G7623A	p.T2541T	.	.	99	5	102	0	G|0.998;A|0.002	142
MYOF	26509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95109596	95109596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	MYOF	NM_013451	exon36	c.A4052G	p.N1351S	.	.	209	59	177	0	.	93
NAA10	8260	broad.mit.edu;bcgsc.ca	37	X	153199845	153199845	+	Silent	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	NAA10	NM_001256119	exon2	c.C105A	p.G35G	.	.	155	5	126	1	.	159
NOX1	27035	broad.mit.edu	37	X	100118532	100118532	+	Missense_Mutation	SNP	G	G	T	rs150438486	byfrequency;alternate_allele	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	NOX1	NM_013955	exon3	c.C194A	p.T65K	.	.	314	6	239	0	G|1.000;A|0.000	131
NT5C1A	84618	broad.mit.edu;bcgsc.ca	37	1	40129095	40129095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	NT5C1A	NM_032526	exon4	c.G445A	p.E149K	.	.	229	9	261	0	.	91
OR5H6	79295	bcgsc.ca	37	3	97983399	97983399	+	Missense_Mutation	SNP	T	T	C	rs113206717	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	OR5H6	NM_001005479	exon1	c.T271C	p.S91P	.	.	650	15	518	4	T|0.978;C|0.022	137
OR5J2	282775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944717	55944717	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	OR5J2	NM_001005492	exon1	c.G624C	p.M208I	.	.	309	96	308	1	.	115
PIEZO1	9780	broad.mit.edu	37	16	88800398	88800398	+	Missense_Mutation	SNP	G	G	C	rs62639697	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_001142864	exon17	c.C2245G	p.Q749E	.	.	135	12	110	1	G|0.034;C|0.966	.
PKDCC	91461	broad.mit.edu	37	2	42281358	42281358	+	Silent	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	PKDCC	NM_138370	exon3	c.G945A	p.E315E	.	.	347	10	286	0	.	67
PLEKHA7	144100	bcgsc.ca	37	11	16848077	16848077	+	Silent	SNP	G	G	A	rs390974	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	PLEKHA7	NM_175058	exon10	c.C933T	p.H311H	.	.	140	5	113	0	G|0.825;A|0.175	227
PRSS1	5644	broad.mit.edu;bcgsc.ca	37	7	142460286	142460286	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	PRSS1	NM_002769	exon4	c.C459T	p.D153D	.	.	722	72	586	1	.	577
RBM5	10181	broad.mit.edu	37	3	50152981	50152981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	RBM5	NM_005778	exon21	c.C1960T	p.R654C	.	.	128	4	106	0	.	278
RDX	5962	broad.mit.edu	37	11	110126050	110126050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	RDX	NM_001260493	exon8	c.A759T	p.K253N	.	.	120	4	121	0	.	90
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15988085	15988085	+	Silent	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	RSC1A1	NM_006511	exon1	c.C1722G	p.A574A	.	.	250	79	239	0	.	91
SERPINA11	256394	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	94912673	94912673	+	Silent	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SERPINA11	NM_001080451	exon3	c.G912T	p.L304L	.	.	201	13	160	1	.	204
SESN2	83667	bcgsc.ca	37	1	28598287	28598287	+	Missense_Mutation	SNP	C	C	T	rs74896528		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SESN2	NM_031459	exon3	c.C259T	p.P87S	.	.	269	8	225	2	C|0.995;T|0.005	230
SGSH	6448	hgsc.bcm.edu	37	17	78188902	78188902	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SGSH	NM_000199	exon3	c.G285A	p.V95V	.	.	55	4	17	0	.	91
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	51160334	51160334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SHANK3	NM_033517	exon21	c.A4031T	p.E1344V	.	.	68	11	46	0	.	69
SLC17A8	246213	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	100774721	100774721	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SLC17A8	NM_001145288	exon2	c.C344G	p.P115R	.	.	269	74	220	1	.	93
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135122263	135122263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SLC9A6	NM_001042537	exon15	c.G1756C	p.G586R	.	.	151	96	118	0	.	131
SYT4	6860	broad.mit.edu	37	18	40850402	40850402	+	Silent	SNP	A	A	G	rs199914288		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	SYT4	NM_020783	exon4	c.T1182C	p.G394G	.	.	253	6	220	1	A|0.999;G|0.000	132
THADA	63892	bcgsc.ca	37	2	43819139	43819139	+	Silent	SNP	A	A	G	rs17031095	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	THADA	NM_001083953	exon3	c.T123C	p.H41H	.	.	188	6	185	0	A|0.885;G|0.115	228
TMEM257	9142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144909486	144909486	+	Silent	SNP	C	C	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	.	NM_004709	exon1	c.C291A	p.P97P	.	.	124	68	107	0	.	.
TMEM61	199964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55452005	55452005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TMEM61	NM_182532	exon2	c.G251A	p.G84D	.	.	125	36	72	0	.	68
TOX	9760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	59852023	59852023	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TOX	NM_014729	exon3	c.G249A	p.L83L	.	.	213	11	209	0	.	227
TRAM1L1	133022	broad.mit.edu;bcgsc.ca	37	4	118005752	118005752	+	Silent	SNP	A	A	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	TRAM1L1	NM_152402	exon1	c.T798A	p.I266I	.	.	117	6	118	1	.	90
UCN3	114131	hgsc.bcm.edu	37	10	5416093	5416093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	UCN3	NM_053049	exon2	c.T410C	p.I137T	.	.	66	4	66	0	.	90
UNKL	64718	hgsc.bcm.edu	37	16	1417655	1417655	+	Splice_Site	DEL	A	A	-	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	UNKL	NM_001276414	exon5	c.276+2T>-	.	.	.	138	14	105	0	.	90
USP31	57478	broad.mit.edu	37	16	23080131	23080131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	USP31	NM_020718	exon16	c.T3295C	p.S1099P	.	.	97	6	111	0	.	663
ZNF189	7743	broad.mit.edu	37	9	104170465	104170465	+	Missense_Mutation	SNP	A	A	G	rs148500092	byfrequency	TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF189	NM_003452	exon3	c.A415G	p.K139E	.	.	126	3	117	0	A|0.999;G|0.001	229
ZNF398	57541	broad.mit.edu	37	7	148876443	148876443	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF398	NM_170686	exon6	c.C1479T	p.N493N	.	.	130	4	112	0	.	91
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49671020	49671020	+	Silent	SNP	C	C	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF423	NM_015069	exon4	c.G2043A	p.L681L	.	.	249	77	182	0	.	228
ZNF879	345462	hgsc.bcm.edu	37	5	178459932	178459932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MR-A520-01A-11D-A25V-10	TCGA-MR-A520-10A-01D-A25V-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	352fbbb4-88a5-4354-b1fa-3a01da3fbfa7	64b28729-b106-4b33-994d-f1710478466c	.	ZNF879	NM_001136116	exon5	c.G983T	p.C328F	.	.	99	4	119	0	.	47
