Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48619929	48619929	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ABCA13	NM_152701	exon56	c.T14464A	p.Y4822N	.	.	63	25	77	1	.	521
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67080447	67080447	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ABCA6	NM_080284	exon34	c.A4310G	p.D1437G	.	.	114	29	109	0	.	159
ACVR2A	92	broad.mit.edu	37	2	148677909	148677909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ACVR2A	NM_001616	exon8	c.G1073T	p.G358V	.	.	52	3	85	0	.	831
AGPAT1	10554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32138303	32138303	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AGPAT1	NM_006411	exon4	c.C409T	p.L137L	.	.	124	36	114	0	.	90
AKR1E2	83592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	4879675	4879675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AKR1E2	NM_001040177	exon5	c.G484A	p.G162R	.	.	108	41	92	0	.	68
AOAH	313	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36571897	36571897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	AOAH	NM_001637	exon17	c.C1360A	p.L454I	.	.	166	53	222	1	.	91
AP5M1	55745	ucsc.edu	37	14	57741500	57741500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_018229	exon2	c.G613A	p.G205R	.	.	136	1	154	0	.	.
ARFIP1	27236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153750843	153750843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ARFIP1	NM_001025593	exon2	c.G58A	p.E20K	.	.	40	11	77	0	.	91
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	110477435	110477435	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ARHGAP20	NM_020809	exon10	c.C814T	p.R272X	.	.	55	12	72	0	.	230
BAGE3	85318	bcgsc.ca	37	21	11058322	11058322	+	Missense_Mutation	SNP	C	C	T	rs2951027	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_182481	exon3	c.G118A	p.D40N	.	.	271	15	348	6	C|0.750;T|0.250	.
BCO2	83875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	112064703	112064703	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCO2	NM_031938	exon4	c.G619T	p.E207X	.	.	68	16	71	0	.	68
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129149866	129149866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	BCORL1	NM_021946	exon3	c.C3118G	p.L1040V	.	.	129	81	101	0	.	294
BPIFA3	128861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31814775	31814775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	C20orf71,arm,malignant_melanoma,-2	.	NM_178466	exon6	c.G661A	p.V221M	.	.	105	18	134	0	.	.
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	159781851	159781851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	C1QTNF2	NM_031908	exon2	c.G303A	p.M101I	.	.	80	29	66	0	.	91
C3orf58	205428	broad.mit.edu	37	3	143691672	143691672	+	Silent	SNP	C	C	T	rs151261436		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	C3orf58	NM_173552	exon1	c.C498T	p.D166D	.	.	37	3	51	1	C|0.989;T|0.011	91
CACNA1E	777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181452992	181452992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CACNA1E	NM_001205293	exon1	c.G112T	p.A38S	.	.	198	79	202	1	.	95
CACNA2D2	9254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50415488	50415488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CACNA2D2	NM_001174051	exon15	c.G1430A	p.G477D	.	.	134	32	113	0	.	278
CCBE1	147372	broad.mit.edu;bcgsc.ca	37	18	57136703	57136703	+	Splice_Site	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CCBE1	NM_133459	exon5	c.400+2T>A	.	.	.	182	8	180	1	.	93
CCDC116	164592	ucsc.edu;bcgsc.ca	37	22	21991072	21991072	+	Missense_Mutation	SNP	T	T	C	rs861852	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CCDC116	NM_152612	exon5	c.T1555C	p.C519R	.	.	36	4	40	0	T|0.681;C|0.319	92
CCDC174	51244	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14708391	14708391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_016474	exon7	c.G661A	p.E221K	.	.	53	23	74	1	.	.
CCDC180	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	100105674	100105674	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_020893	exon19	c.C2459G	p.S820C	.	.	108	6	83	0	.	.
CCDC40	55036	broad.mit.edu	37	17	78013907	78013907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CCDC40	NM_017950	exon3	c.T390G	p.D130E	.	.	127	4	115	1	.	71
CCDC40	55036	broad.mit.edu	37	17	78013909	78013909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CCDC40	NM_017950	exon3	c.G392T	p.S131I	.	.	124	4	115	1	.	71
CD101	9398	broad.mit.edu	37	1	117560939	117560939	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CD101	NM_001256109	exon6	c.C1774G	p.L592V	.	.	213	4	213	0	.	94
CFHR5	81494	ucsc.edu	37	1	196971783	196971783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CFHR5	NM_030787	exon8	c.C1319T	p.P440L	.	.	116	2	156	0	.	154
CHD1	1105	broad.mit.edu	37	5	98229285	98229285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHD1	NM_001270	exon13	c.C1826T	p.A609V	.	.	73	4	108	0	.	274
CHD1	1105	hgsc.bcm.edu;broad.mit.edu	37	5	98229286	98229286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHD1	NM_001270	exon13	c.G1825T	p.A609S	.	.	71	4	107	0	.	274
CHIT1	1118	ucsc.edu	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHIT1	NM_003465	exon10	c.G1073A	p.W358X	.	.	82	13	79	0	C|0.989;T|0.011	90
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154543798	154543798	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CHRNB2	NM_000748	exon5	c.C499A	p.Q167K	.	.	278	16	274	0	.	90
CILP2	148113	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19654087	19654087	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CILP2	NM_153221	exon7	c.A1008G	p.R336R	.	.	237	63	229	1	.	91
CLCN5	1184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	49854827	49854827	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CLCN5	NM_001127898	exon13	c.G1799T	p.G600V	.	.	49	29	66	0	.	132
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17394764	17394764	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CNTLN	NM_017738	exon15	c.T2312C	p.V771A	.	.	96	33	142	0	.	91
CNTROB	116840	bcgsc.ca	37	17	7851271	7851278	+	Frame_Shift_Del	DEL	CTGTCGAC	CTGTCGAC	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CTGTCGAC	CTGTCGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CNTROB	NM_001037144	exon15	c.2183_2190del	p.728_730del	.	.	34	6	89	0	.	153
COL12A1	1303	bcgsc.ca	37	6	75799848	75799848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	COL12A1	NM_004370	exon63	c.G8919T	p.M2973I	.	.	47	4	50	0	.	142
CPB2	1361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46638821	46638821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CPB2	NM_001872	exon8	c.C758T	p.T253I	.	.	145	50	160	0	.	92
CSMD1	64478	bcgsc.ca	37	8	3253768	3253768	+	Silent	SNP	C	C	T	rs3802303	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CSMD1	NM_033225	exon17	c.G2541A	p.L847L	.	.	115	6	271	1	C|0.664;T|0.336	86
CSPG4	1464	bcgsc.ca	37	15	75982227	75982227	+	Silent	SNP	T	T	G	rs78884605	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CSPG4	NM_001897	exon3	c.A1179C	p.G393G	.	.	159	17	167	5	T|0.838;G|0.162	229
CTR9	9646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10796824	10796824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTR9	NM_014633	exon23	c.C2956A	p.P986T	.	.	46	20	66	0	.	92
CTSK	1513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	150778408	150778408	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	CTSK	NM_000396	exon4	c.G328T	p.E110X	.	.	134	59	204	0	.	91
DCC	1630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50731690	50731690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DCC	NM_005215	exon10	c.G1678A	p.G560S	.	.	128	38	124	3	.	225
DNAH12	201625	bcgsc.ca	37	3	57430956	57430956	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DNAH12	NM_178504	exon28	c.T4301C	p.L1434S	.	.	67	4	75	0	.	47
DNMT1	1786	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10248624	10248624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DNMT1	NM_001130823	exon36	c.G4177A	p.V1393M	.	.	157	56	138	1	.	660
DOK7	285489	broad.mit.edu;bcgsc.ca	37	4	3494504	3494504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DOK7	NM_173660	exon7	c.C791T	p.S264F	.	.	245	8	201	0	.	91
DVL2	1856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7131298	7131298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	DVL2	NM_004422	exon10	c.G1100T	p.R367L	.	.	97	51	187	0	.	659
EGFLAM	133584	ucsc.edu;bcgsc.ca	37	5	38438416	38438416	+	Missense_Mutation	SNP	T	T	G	rs143262017		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EGFLAM	NM_001205301	exon17	c.T2323G	p.F775V	.	.	279	161	198	3	T|1.000;G|0.000	187
EHD2	30846	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48244419	48244419	+	Silent	SNP	C	C	T	rs138874482		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EHD2	NM_014601	exon6	c.C1362T	p.D454D	.	.	106	32	93	0	C|0.999;T|0.001	92
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34773213	34773213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPB41L1	NM_001258329	exon8	c.C741T	p.T247T	.	.	86	13	93	0	.	93
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220193425	220193425	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EPRS	NM_004446	exon10	c.A1254G	p.P418P	.	.	102	23	140	0	.	92
ESYT1	23344	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56526103	56526103	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ESYT1	NM_015292	exon8	c.C971T	p.S324F	.	.	158	48	186	1	.	95
EXD3	54932	hgsc.bcm.edu;bcgsc.ca	37	9	140247082	140247082	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	EXD3	NM_017820	exon11	c.C1027A	p.L343I	.	.	65	4	53	0	.	90
FAM46D	169966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79698451	79698451	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FAM46D	NM_001170574	exon5	c.G413A	p.C138Y	.	.	49	7	80	0	.	130
FBXL3	26224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77589641	77589641	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FBXL3	NM_012158	exon4	c.T546A	p.T182T	.	.	109	38	147	0	.	226
FGD2	221472	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36979514	36979514	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FGD2	NM_173558	exon4	c.C411T	p.R137R	.	.	147	40	145	1	.	229
FOXP4	116113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	41566660	41566660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FOXP4	NM_001012426	exon17	c.G2029A	p.E677K	.	.	258	89	275	0	.	289
FRMD3	257019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	85863364	85863364	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FRMD3	NM_174938	exon14	c.C1263T	p.A421A	.	.	40	14	36	0	.	91
FTX	100302692	bcgsc.ca	37	X	73326171	73326171	+	RNA	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	16	9	23	0	.	.
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3522996	3522996	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	FZR1	NM_001136197	exon1	c.G9A	p.Q3Q	.	.	202	66	164	0	.	227
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153940659	153940659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GAB3	NM_001081573	exon4	c.C914T	p.S305F	.	.	130	95	95	0	.	227
GALK2	2585	bcgsc.ca	37	15	49462522	49462522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GALK2	NM_002044	exon1	c.G3T	p.M1I	.	.	52	4	68	0	.	160
GNAI2	2771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	50273847	50273847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GNAI2	NM_002070	exon1	c.G80T	p.G27V	.	.	118	41	99	0	.	417
GRM7	2917	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	7620716	7620716	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GRM7	NM_000844	exon8	c.G2123T	p.S708I	.	.	321	93	360	2	.	526
GSX1	219409	broad.mit.edu	37	13	28367955	28367955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GSX1	NM_145657	exon2	c.G665T	p.G222V	.	.	141	4	88	0	.	69
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27549250	27549250	+	Splice_Site	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	GTF3C1	NM_001520	exon5	c.609-2A>T	.	.	.	79	26	71	0	.	94
HMGCR	3156	hgsc.bcm.edu	37	5	74651021	74651022	+	Frame_Shift_Ins	INS	-	-	CAAGA	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1704_1705insCAAGA	p.R568fs	.	.	108	0	107	0	.	227
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu	37	5	74651016	74651017	+	In_Frame_Ins	INS	-	-	CAAGAC	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1699_1700insCAAGAC	p.N567delinsTRH	.	.	107	21	112	0	.	227
HMGCR	3156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74651018	74651018	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HMGCR	NM_000859	exon13	c.1701delT	p.N567fs	.	.	107	21	111	0	.	227
HNF1A	6927	hgsc.bcm.edu	37	12	121434166	121434166	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.1057delC	p.P353fs	.	.	141	0	167	0	.	1745
HNF1A	6927	hgsc.bcm.edu;bcgsc.ca	37	12	121434164	121434164	+	Missense_Mutation	SNP	C	C	T	rs151344538	alternate_allele	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.C1055T	p.S352F	.	.	141	29	167	0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121434162	121434162	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.1053delG	p.V351fs	.	.	142	29	168	0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121434162	121434162	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNF1A	NM_000545	exon5	c.G1053T	p.V351V	.	.	142	4	168	0	.	1745
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121431983	121431983	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	HNF1A,NS,other,0	HNF1A	NM_000545	exon4	c.A730G	p.R244G	.	.	163	46	150	1	.	1745
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178081416	178081416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HNRNPA3	NM_194247	exon6	c.G656T	p.G219V	.	.	111	31	148	0	.	70
HYDIN	54768	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	71019100	71019100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	HYDIN	NM_001270974	exon28	c.C4320G	p.I1440M	.	.	93	26	97	0	.	92
IBSP	3381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88732684	88732684	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IBSP	NM_004967	exon7	c.C576T	p.S192S	.	.	238	79	240	0	.	90
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130408573	130408573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IGSF1	NM_001170961	exon18	c.G3766A	p.G1256R	.	.	29	5	60	0	.	133
IL12RB2	3595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67833556	67833556	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IL12RB2	NM_001559	exon10	c.A1307G	p.N436S	.	.	159	39	140	0	.	92
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9450696	9450696	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IPO7	NM_006391	exon14	c.T1544A	p.V515E	.	.	119	31	156	0	.	271
IRS2	8660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	110437992	110437992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	IRS2	NM_003749	exon1	c.C409T	p.R137C	.	.	39	12	30	0	.	1334
ITGB2	3689	bcgsc.ca	37	21	46321445	46321445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ITGB2	NM_000211	exon6	c.G703T	p.G235C	.	.	130	48	147	3	.	717
KCNMB3	27094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178968887	178968887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KCNMB3	NM_014407	exon1	c.A5G	p.D2G	.	.	101	26	122	0	.	90
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	26948494	26948494	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0100	NM_014680	exon27	c.G4982T	p.R1661L	.	.	69	21	83	0	.	93
KIAA0408	9729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	127768213	127768213	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIAA0408	NM_014702	exon5	c.G1251A	p.E417E	.	.	36	5	66	0	.	90
KIF25	3834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168439388	168439388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KIF25	NM_030615	exon5	c.A473G	p.E158G	.	.	246	71	279	2	.	92
KLF14	136259	bcgsc.ca	37	7	130418525	130418525	+	Silent	SNP	G	G	A	rs76603546	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLF14	NM_138693	exon1	c.C336T	p.S112S	.	.	23	5	24	0	G|0.581;A|0.419	90
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	70293586	70293586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLHL1	NM_020866	exon9	c.A1930G	p.T644A	.	.	130	32	146	0	.	90
KLHL2	11275	ucsc.edu;bcgsc.ca	37	4	166220662	166220662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KLHL2	NM_001161521	exon8	c.G787T	p.V263F	.	.	39	4	62	0	.	226
KRT15	3866	bcgsc.ca	37	17	39674935	39674935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KRT15	NM_002275	exon1	c.G145A	p.A49T	.	.	122	34	140	3	.	90
KRTAP4-5	85289	ucsc.edu	37	17	39305785	39305785	+	Missense_Mutation	SNP	A	A	T	rs411367		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	KRTAP4-5	NM_033188	exon1	c.T235A	p.C79S	.	.	94	10	87	1	A|0.354;T|0.646	90
LAMA5	3911	bcgsc.ca	37	20	60904036	60904036	+	Silent	SNP	T	T	A	rs151096227	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LAMA5	NM_005560	exon34	c.A4311T	p.P1437P	.	.	236	8	229	3	T|0.998;A|0.002	93
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63990465	63990465	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LGSN	NM_016571	exon4	c.A991G	p.T331A	.	.	51	25	67	0	.	227
LILRB3	11025	bcgsc.ca	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LILRB3	NM_006864	exon4	c.C366T	p.S122S	.	.	153	10	155	3	G|0.881;A|0.119	93
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	76429476	76429476	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LMO7	NM_005358	exon28	c.G3896A	p.G1299D	.	.	166	49	176	0	.	586
LOC727924	0	broad.mit.edu	37	15	22347591	22347591	+	RNA	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	5	2	8	0	.	.
LRP12	29967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	105544164	105544164	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP12	NM_013437	exon2	c.A107T	p.E36V	.	.	104	42	152	2	.	90
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170055351	170055351	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP2	NM_004525	exon45	c.G8523A	p.L2841L	.	.	94	27	89	0	.	175
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	53727742	53727742	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRP8	NM_004631	exon12	c.G1912C	p.E638Q	.	.	211	76	205	0	.	90
LRRIQ1	84125	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85518184	85518184	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon17	c.G3894T	p.K1298N	.	.	79	28	76	0	.	95
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	85518185	85518185	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon17	c.A3895T	p.R1299X	.	.	78	27	76	0	.	95
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85554390	85554390	+	Splice_Site	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LRRIQ1	NM_001079910	exon24	c.4721-1G>C	.	.	.	52	23	50	0	.	95
LSP1	4046	broad.mit.edu;ucsc.edu;mdanderson.org	37	11	1888129	1888129	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	LSP1	NM_001242932	exon2	c.A425G	p.N142S	.	.	12	6	14	0	.	90
METTL21A	151194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	208478154	208478154	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	METTL21A	NM_145280	exon4	c.T273A	p.T91T	.	.	19	5	26	0	.	69
MGAT3	4248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39884425	39884425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MGAT3	NM_002409	exon2	c.C1073T	p.T358I	.	.	108	30	85	1	.	90
MIR1248	100302143	ucsc.edu;mdanderson.org	37	3	186504557	186504557	+	RNA	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	36	14	65	0	.	.
MRPL45P2	653479	broad.mit.edu	37	17	45569815	45569815	+	RNA	SNP	A	A	G	rs2610367	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	102	3	115	0	A|0.484;G|0.516	.
MRPL53	116540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	74699251	74699251	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MRPL53	NM_053050	exon3	c.C334T	p.R112C	.	.	120	10	138	0	.	90
MST1	4485	hgsc.bcm.edu;bcgsc.ca	37	3	49724207	49724207	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MST1	NM_020998	exon7	c.T757C	p.Y253H	.	.	436	73	425	0	.	278
MTMR1	8776	ucsc.edu;bcgsc.ca	37	X	149895739	149895739	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MTMR1	NM_003828	exon4	c.G381T	p.L127L	.	.	43	4	39	0	.	131
MUC2	4583	broad.mit.edu	37	11	1090937	1090937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MUC2	NM_002457	exon28	c.A3832C	p.T1278P	.	.	74	14	79	7	.	90
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1095258	1095258	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MUC2	NM_002457	exon33	c.G6066A	p.K2022K	.	.	169	18	153	0	.	90
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171260757	171260757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MYO3B	NM_001083615	exon20	c.A2278T	p.M760L	.	.	88	28	94	0	.	530
MYOM1	8736	bcgsc.ca	37	18	3126811	3126811	+	Missense_Mutation	SNP	A	A	G	rs1071600	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	MYOM1	NM_003803	exon19	c.T2879C	p.I960T	.	.	279	8	298	0	A|0.744;G|0.256	94
NANOG	79923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7945627	7945627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NANOG	NM_024865	exon2	c.C233T	p.T78I	.	.	134	62	194	0	.	90
NAV1	89796	bcgsc.ca	37	1	201618264	201618264	+	Silent	SNP	C	C	T	rs1267119	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NAV1	NM_020443	exon1	c.C468T	p.G156G	.	.	130	7	93	1	C|0.921;T|0.079	228
NBPF10	100132406	broad.mit.edu	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_001039703	exon27	c.A3493T	p.I1165F	.	.	72	5	96	0	A|0.625;T|0.375	.
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	133489528	133489528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_207363	exon17	c.C5225A	p.P1742Q	.	.	220	72	236	0	.	.
NDN	4692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	23931535	23931535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDN	NM_002487	exon1	c.A830G	p.E277G	.	.	52	12	69	0	.	90
NDUFV2	4729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	9102767	9102767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NDUFV2	NM_021074	exon1	c.C26T	p.A9V	.	.	33	16	20	0	.	91
NR1I2	8856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119526207	119526207	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NR1I2	NM_022002	exon2	c.G227T	p.G76V	.	.	171	50	166	0	.	188
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	32621590	32621590	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NRG1	NM_013956	exon13	c.C1608T	p.Y536Y	.	.	106	29	114	0	.	525
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	3707425	3707425	+	Splice_Site	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	NUP98	NM_016320	exon30	c.4455-1G>C	.	.	.	109	38	110	0	.	703
OBSCN	84033	bcgsc.ca	37	1	228492044	228492044	+	Silent	SNP	G	G	A	rs1150910	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OBSCN	NM_001271223	exon53	c.G14043A	p.E4681E	.	.	135	6	105	1	G|0.636;A|0.364	403
OR10H4	126541	broad.mit.edu;bcgsc.ca	37	19	16060284	16060284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OR10H4	NM_001004465	exon1	c.T467C	p.M156T	.	.	234	9	224	0	.	114
OR9K2	441639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55524128	55524128	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OR9K2	NM_001005243	exon1	c.T576C	p.S192S	.	.	96	33	107	1	.	69
OSBPL6	114880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179201097	179201097	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OSBPL6	NM_001201482	exon9	c.A727G	p.T243A	.	.	112	39	136	0	.	69
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	63283430	63283430	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	OTX1	NM_014562	exon5	c.A1044T	p.S348S	.	.	157	54	153	0	.	70
P2RX7	5027	bcgsc.ca	37	12	121613229	121613229	+	Missense_Mutation	SNP	G	G	A	rs28360457	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	P2RX7	NM_002562	exon9	c.G920A	p.R307Q	.	.	91	6	92	0	A|0.008;C|0.162	268
P2RY8	286530	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1585347	1585347	+	Silent	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	P2RY8	NM_178129	exon2	c.G105T	p.A35A	.	.	129	41	132	1	.	522
PCDHB11	56125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140579644	140579644	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PCDHB11	NM_018931	exon1	c.C297T	p.I99I	.	.	96	5	109	0	.	96
PDZRN3	23024	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	73437175	73437175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PDZRN3	NM_015009	exon8	c.C1462A	p.L488I	.	.	11	4	17	0	.	232
PEX13	5194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61258823	61258823	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX13	NM_002618	exon2	c.A362C	p.Q121P	.	.	138	36	94	0	.	91
PEX5L	51555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	179537706	179537706	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PEX5L	NM_016559	exon9	c.A881T	p.N294I	.	.	182	57	188	0	.	156
PGM3	5238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	83888466	83888466	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PGM3	NM_001199917	exon9	c.A1039C	p.S347R	.	.	85	32	109	0	.	90
PIEZO1	9780	broad.mit.edu	37	16	88800395	88800395	+	Missense_Mutation	SNP	C	C	G	rs202139830		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_001142864	exon17	c.G2248C	p.E750Q	.	.	174	5	148	0	.	.
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48565344	48565344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLA2G4C	NM_001159322	exon14	c.A1198G	p.I400V	.	.	147	43	162	0	.	92
PLP1	5354	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	103042816	103042816	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLP1	NM_001128834	exon5	c.G543T	p.W181C	.	.	115	77	102	1	.	555
PLXNA1	5361	broad.mit.edu;bcgsc.ca	37	3	126707676	126707682	+	Frame_Shift_Del	DEL	GCTGCGG	GCTGCGG	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	GCTGCGG	GCTGCGG	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLXNA1	NM_032242	exon1	c.240_246del	p.80_82del	.	.	328	9	270	0	.	93
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	131833385	131833385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PLXNA4	NM_020911	exon26	c.G4681A	p.A1561T	.	.	151	49	109	0	.	91
PPFIA2	8499	bcgsc.ca	37	12	81719600	81719600	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PPFIA2	NM_001220476	exon21	c.C2598T	p.G866G	.	.	52	4	59	0	.	231
PPIP5K2	23262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	102469329	102469329	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PPIP5K2	NM_015216	exon2	c.G287T	p.C96F	.	.	40	14	61	0	.	92
PRAMEF1	65121	bcgsc.ca	37	1	12855897	12855897	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRAMEF1	NM_023013	exon4	c.G1177A	p.A393T	.	.	409	125	448	7	.	22
PRDM14	63978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	70981670	70981670	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRDM14	NM_024504	exon2	c.G426A	p.P142P	.	.	147	12	150	0	.	93
PRPF40A	55660	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	153515808	153515808	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRPF40A	NM_017892	exon22	c.T2385G	p.H795Q	.	.	148	57	174	2	.	68
PRSS16	10279	bcgsc.ca	37	6	27216699	27216699	+	Missense_Mutation	SNP	G	G	T	rs5030965	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	PRSS16	NM_005865	exon3	c.G311T	p.S104I	.	.	97	5	177	0	G|0.940;T|0.060	94
PYURF	100996939	broad.mit.edu;ucsc.edu	37	4	89443178	89443178	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_032906	exon2	c.A206G	p.Y69C	.	.	50	17	52	2	.	.
RAB3IL1	5866	broad.mit.edu	37	11	61666807	61666807	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RAB3IL1	NM_013401	exon9	c.C1045G	p.Q349E	.	.	46	4	49	0	.	228
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32589248	32589248	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RFPL2	NM_006605	exon1	c.C14T	p.S5L	.	.	211	106	217	0	.	91
RNF122	79845	bcgsc.ca	37	8	33416189	33416189	+	Silent	SNP	G	G	A	rs3735950	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RNF122	NM_024787	exon2	c.C126T	p.F42F	.	.	75	6	70	0	G|0.453;A|0.547	226
RNMTL1	55178	broad.mit.edu	37	17	695108	695108	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RNMTL1	NM_018146	exon4	c.G1062T	p.V354V	.	.	95	4	126	1	.	91
RUSC1	23623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155295430	155295430	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RUSC1	NM_001105203	exon6	c.G1781C	p.S594T	.	.	118	37	110	0	.	92
RYR1	6261	broad.mit.edu;bcgsc.ca	37	19	38964295	38964295	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	RYR1	NM_001042723	exon28	c.A4044G	p.K1348K	.	.	93	36	78	2	.	100
SAA2	6289	bcgsc.ca	37	11	18266989	18266989	+	Missense_Mutation	SNP	T	T	C	rs202101890	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SAA2	NM_030754	exon4	c.A304G	p.K102E	.	.	204	10	200	6	T|0.997;C|0.003	514
SAMD9L	219285	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92764969	92764969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SAMD9L	NM_152703	exon5	c.C316T	p.H106Y	.	.	86	23	117	1	.	94
SCN1B	6324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35523452	35523452	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SCN1B	NM_001037	exon2	c.T61A	p.C21S	.	.	80	19	87	0	.	91
SCN5A	6331	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38620987	38620987	+	Splice_Site	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SCN5A	NM_198056	exon19	c.3229-1G>A	.	.	.	127	41	124	1	.	98
SEC31B	25956	bcgsc.ca	37	10	102269156	102269156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SEC31B	NM_015490	exon4	c.C316A	p.L106M	.	.	38	4	50	0	.	91
SETD6	79918	broad.mit.edu	37	16	58549753	58549753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SETD6	NM_024860	exon2	c.G86T	p.C29F	.	.	21	6	26	0	.	91
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	51171701	51171701	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SHANK1	NM_016148	exon22	c.C3516T	p.S1172S	.	.	15	6	18	0	.	153
SHISA6	388336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11166833	11166833	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SHISA6	NM_207386	exon2	c.G789A	p.K263K	.	.	116	58	228	0	.	67
SIGLEC10	89790	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51920190	51920190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SIGLEC10	NM_001171157	exon3	c.C436T	p.P146S	.	.	179	43	223	1	.	91
SIGLEC12	89858	bcgsc.ca	37	19	52002729	52002729	+	Silent	SNP	G	G	A	rs2009362	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SIGLEC12	NM_053003	exon3	c.C1050T	p.G350G	.	.	223	10	230	1	G|0.420;A|0.580	96
SLC25A13	10165	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	95838258	95838258	+	Silent	SNP	T	T	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC25A13	NM_001160210	exon5	c.A360G	p.T120T	.	.	63	36	68	2	.	515
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	118603838	118603838	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC25A5	NM_001152	exon2	c.T326G	p.F109C	.	.	104	11	80	0	.	131
SLC26A11	284129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78220002	78220002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC26A11	NM_173626	exon12	c.G1147A	p.V383M	.	.	69	20	53	0	.	90
SLC3A2	6520	broad.mit.edu;bcgsc.ca	37	11	62648802	62648802	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC3A2	NM_001012662	exon4	c.A613G	p.I205V	.	.	59	21	53	2	.	90
SLC9A3	6550	broad.mit.edu	37	5	484634	484634	+	Splice_Site	SNP	C	C	T	rs144524702		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC9A3	NM_004174	exon6	c.932+1G>A	.	.	.	339	8	290	0	C|1.000;T|0.000	90
SLC9A6	10479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135106598	135106598	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SLC9A6	NM_001042537	exon12	c.A1572G	p.V524V	.	.	93	54	106	0	.	131
SMC5	23137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	72874055	72874055	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SMC5	NM_015110	exon1	c.C61G	p.P21A	.	.	127	44	149	1	.	229
SPATA31A6	389730	broad.mit.edu;mdanderson.org	37	9	43625360	43625360	+	Silent	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	NM_001145196	exon4	c.T3327A	p.S1109S	.	.	136	52	133	0	.	.
SPRR3	6707	ucsc.edu;mdanderson.org	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	SPRR3	NM_001097589	exon2	c.C219T	p.G73G	.	.	133	29	132	0	A|0.000;C|0.697;T|0.303	45
ST8SIA3	51046	broad.mit.edu;bcgsc.ca	37	18	55024675	55024675	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ST8SIA3	NM_015879	exon3	c.G834A	p.P278P	.	.	14	4	19	0	.	136
TBC1D29	26083	bcgsc.ca	37	17	28887667	28887667	+	Silent	SNP	T	T	C	rs78888987	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TBC1D29	NM_015594	exon3	c.T111C	p.D37D	.	.	146	11	147	3	T|0.934;C|0.066	22
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141543975	141543975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TBC1D9	NM_015130	exon21	c.C3175T	p.L1059F	.	.	43	26	38	0	.	23
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	101908774	101908774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TGFBR1	NM_004612	exon7	c.G1138A	p.A380T	.	.	45	9	77	0	.	954
TLR1	7096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38799346	38799346	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TLR1	NM_003263	exon4	c.G1107A	p.G369G	.	.	32	5	38	0	.	524
TMBIM4	51643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	66531753	66531753	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	TMBIM4,brain,glioma,-1	TMBIM4	NM_016056	exon7	c.T704G	p.V235G	.	.	51	16	55	0	.	515
TMED8	283578	bcgsc.ca	37	14	77818055	77818055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMED8	NM_213601	exon2	c.C158A	p.A53D	.	.	66	4	65	0	.	90
TMEM135	65084	broad.mit.edu	37	11	87024489	87024489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMEM135	NM_022918	exon11	c.G959T	p.W320L	.	.	102	4	136	0	.	514
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111785275	111785275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMPRSS7	NM_001042575	exon11	c.G1214A	p.R405K	.	.	80	36	79	0	.	70
TMPRSS9	360200	bcgsc.ca	37	19	2413898	2413898	+	Silent	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TMPRSS9	NM_182973	exon9	c.C1353A	p.A451A	.	.	109	30	92	2	.	91
TNFRSF8	943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12175637	12175637	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TNFRSF8	NM_001243	exon8	c.A797C	p.D266A	.	.	103	34	100	0	.	654
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	25668275	25668275	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TOP2B	NM_001068	exon17	c.T2082A	p.H694Q	.	.	74	4	66	0	.	273
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211545809	211545809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRAF5	NM_004619	exon11	c.A1439G	p.Q480R	.	.	81	25	74	0	.	661
TRIM41	90933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	180651721	180651721	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRIM41	NM_201627	exon1	c.A722G	p.D241G	.	.	224	15	234	1	.	226
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234894478	234894478	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TRPM8	NM_024080	exon21	c.C2908T	p.L970L	.	.	208	84	251	0	.	94
TTC30A	92104	broad.mit.edu	37	2	178483000	178483000	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTC30A	NM_152275	exon1	c.G430T	p.G144W	.	.	130	5	141	0	.	90
TTC33	23548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	40716358	40716358	+	Silent	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTC33	NM_012382	exon5	c.A678T	p.S226S	.	.	92	42	87	1	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	179579150	179579150	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	TTN	NM_001267550	exon91	c.G26351A	p.W8784X	.	.	70	11	61	0	.	636
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	54590037	54590037	+	Silent	SNP	T	T	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNC13C	NM_001080534	exon10	c.T4017A	p.S1339S	.	.	276	81	291	0	.	51
UNKL	64718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	1417163	1417179	+	Frame_Shift_Del	DEL	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CCGATGTCCCCACAGCC	CCGATGTCCCCACAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UNKL	NM_023076	exon5	c.457_473del	p.153_158del	.	.	146	10	128	0	.	90
USP2	9099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119228275	119228275	+	Silent	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP2	NM_004205	exon11	c.G1527A	p.R509R	.	.	132	50	115	0	.	661
USP34	9736	hgsc.bcm.edu;broad.mit.edu	37	2	61441759	61441760	+	In_Frame_Ins	INS	-	-	GACCTTGTT	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	USP34	NM_014709	exon68	c.8118_8119insAACAAGGTC	p.S2706delinsSTRS	.	.	267	21	236	0	.	579
UTP20	27340	broad.mit.edu	37	12	101767234	101767234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	UTP20	NM_014503	exon53	c.G6934T	p.D2312Y	.	.	124	4	127	0	.	155
VARS2	57176	ucsc.edu	37	6	30891006	30891006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VARS2	NM_001167734	exon24	c.G2401T	p.E801X	.	.	187	54	263	4	.	26
VARS2	57176	ucsc.edu;bcgsc.ca	37	6	30891005	30891005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VARS2	NM_001167734	exon24	c.G2400T	p.E800D	.	.	188	53	266	3	.	26
VCX	26609	ucsc.edu	37	X	7811747	7811747	+	Missense_Mutation	SNP	T	T	C	rs80291436	byfrequency	TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VCX	NM_013452	exon3	c.T311C	p.L104P	.	.	83	4	89	1	T|0.526;C|0.474	22
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	46716005	46716005	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	VPS35	NM_018206	exon3	c.G185C	p.S62T	.	.	156	10	214	0	.	90
WDR43	23160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29129433	29129433	+	Silent	SNP	A	A	G	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	WDR43	NM_015131	exon3	c.A471G	p.T157T	.	.	85	24	98	0	.	69
XIRP2	129446	broad.mit.edu	37	2	168108074	168108074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	XIRP2	NM_152381	exon9	c.G10172T	p.C3391F	.	.	88	3	109	0	.	104
XPNPEP2	7512	hgsc.bcm.edu	37	X	128876095	128876095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	XPNPEP2	NM_003399	exon2	c.G61T	p.G21C	.	.	58	4	48	0	.	130
YIF1B	90522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38796134	38796134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	YIF1B	NM_001145463	exon9	c.G871A	p.G291S	.	.	254	92	284	2	.	68
ZDHHC4	55146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	6621814	6621814	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZDHHC4	NM_018106	exon5	c.302delT	p.L101fs	.	.	169	61	171	0	.	154
ZDHHC8	29801	broad.mit.edu	37	22	20128835	20128835	+	Silent	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZDHHC8	NM_001185024	exon8	c.G990T	p.L330L	.	.	191	4	176	0	.	91
ZFHX3	463	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72829983	72829983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZFHX3	NM_006885	exon9	c.G6598A	p.E2200K	.	.	119	46	131	1	.	72
ZNF480	147657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52817496	52817496	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZNF480	NM_144684	exon3	c.G163T	p.V55L	.	.	67	18	63	0	.	153
ZNF558	148156	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8932718	8932718	+	Silent	SNP	G	G	A	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZNF558	NM_144693	exon2	c.C81T	p.G27G	.	.	191	77	217	1	.	90
ZNF595	152687	bcgsc.ca	37	4	86145	86145	+	RNA	SNP	A	A	G	rs200927625		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	25	8	30	0	.	.
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44511883	44511883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	ZSWIM1	NM_080603	exon2	c.A652C	p.S218R	.	.	74	20	80	0	.	91
ADAM12	8038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127760045	127760046	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-NI-A4U2-01A-11D-A28X-10	TCGA-NI-A4U2-10A-01D-A28X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa0d37a-b560-4a23-bc45-a3118eb5883a	3f6c5637-3042-4e1e-95c6-189ca0e5719e	.	.	.	.	.	.	.	.	.	.	.	.	.	
