Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCB1	5243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	87168617	87168617	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ABCB1	NM_000927	exon20	c.C2364A	p.L788L	.	.	46	10	29	0	.	582
ACP6	51205	broad.mit.edu	37	1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	rs201678741		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ACP6	NM_016361	exon1	c.T86G	p.V29G	.	.	67	31	53	15	.	94
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	42876851	42876851	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP11	NM_016248	exon8	c.A3969T	p.P1323P	.	.	132	24	193	0	.	227
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	4737115	4737115	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AKAP3	NM_006422	exon4	c.T953A	p.L318Q	.	.	120	35	108	0	.	292
ALS2CL	259173	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46727834	46727834	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ALS2CL	NM_001190707	exon6	c.A630G	p.T210T	.	.	115	29	131	1	.	155
ANGPTL6	83854	bcgsc.ca	37	19	10206774	10206774	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANGPTL6	NM_031917	exon2	c.C466A	p.R156R	.	.	17	4	22	0	.	90
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17397348	17397348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_152363	exon9	c.A1835T	p.Q612L	.	.	91	25	82	0	.	.
ANKRD10	55608	broad.mit.edu	37	13	111532212	111532212	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANKRD10	NM_017664	exon6	c.C1035T	p.C345C	.	.	84	4	108	2	.	226
ANKRD30B	374860	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	14851875	14851875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANKRD30B	NM_001145029	exon36	c.G3575A	p.S1192N	.	.	120	23	143	0	.	24
ANKS1A	23294	hgsc.bcm.edu	37	6	34857302	34857303	+	In_Frame_Ins	INS	-	-	GGCGGC	rs71812534	alternate_allele	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ANKS1A	NM_015245	exon1	c.123_124insGGCGGC	p.G41delinsGGG	.	.	33	10	51	0	.	94
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16319967	16319967	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AP1M1	NM_001130524	exon5	c.C525A	p.V175V	.	.	122	25	144	0	.	156
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7528840	7528840	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ARHGEF18	NM_001130955	exon12	c.G2208A	p.K736K	.	.	80	22	104	0	.	228
ATP6V0A4	50617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138394373	138394373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ATP6V0A4	NM_130841	exon20	c.C2425G	p.H809D	.	.	67	13	85	0	.	91
AVIL	10677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58207158	58207158	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	AVIL	NM_006576	exon3	c.G190C	p.G64R	.	.	65	10	106	0	.	514
BPNT1	10380	ucsc.edu	37	1	220231275	220231275	+	RNA	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	BPNT1	.	.	.	.	.	.	182	1	143	0	.	91
BRMS1	25855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66109566	66109566	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	BRMS1	NM_015399	exon3	c.139+1G>T	.	.	.	54	12	80	0	.	90
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	29294547	29294547	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	C2orf71	NM_001029883	exon1	c.G2581T	p.E861X	.	.	109	35	119	0	.	91
C7orf72	100130988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50135733	50135733	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	C7orf72	NM_001161834	exon1	c.T52A	p.S18T	.	.	129	30	140	0	.	23
CCDC96	257236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7043534	7043534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CCDC96	NM_153376	exon1	c.G1132A	p.E378K	.	.	81	18	93	0	.	90
CCT6P3	643180	broad.mit.edu	37	7	64530103	64530103	+	RNA	SNP	G	G	A	rs1799112	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	.	.	.	55	3	54	0	G|0.430;A|0.570	.
CDC27	996	bcgsc.ca	37	17	45214643	45214643	+	Silent	SNP	A	A	T	rs138020641		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CDC27	NM_001114091	exon14	c.T1806A	p.V602V	.	.	47	9	35	2	.	291
CEP89	84902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33370231	33370231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CEP89	NM_032816	exon19	c.G2189T	p.R730L	.	.	65	15	72	0	.	94
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	175819809	175819809	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CLTB	NM_007097	exon6	c.T656C	p.L219P	.	.	133	27	93	0	.	90
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238253847	238253847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	COL6A3	NM_004369	exon33	c.G7102T	p.G2368C	.	.	86	13	113	0	.	526
COX3	5742	broad.mit.edu	37	MT	9925	9925	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	ENST00000362079	exon1	c.G719A	p.X240X	.	.	32	30	12	0	.	.
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1676129	1676129	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_020825	exon2	c.A502T	p.T168S	.	.	95	16	90	0	.	.
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	CTNNB1,NS,carcinoma,0	CTNNB1	NM_001098209	exon3	c.T133C	p.S45P	.	.	157	48	169	0	.	24361
CXCL2	2920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74964377	74964377	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CXCL2	NM_002089	exon3	c.A249G	p.K83K	.	.	113	44	153	0	.	90
CYP7B1	9420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	65537039	65537039	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	CYP7B1	NM_004820	exon2	c.G180T	p.L60L	.	.	212	157	105	0	.	93
DEK	7913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18258580	18258580	+	Missense_Mutation	SNP	T	T	C	rs147997771		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DEK	NM_003472	exon3	c.A202G	p.M68V	.	.	281	89	218	0	T|1.000;C|0.000	658
DHX8	1659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41590858	41590858	+	Silent	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DHX8	NM_004941	exon17	c.G2631T	p.T877T	.	.	77	26	151	0	.	229
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124419244	124419244	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH10	NM_207437	exon77	c.C13200T	p.P4400P	.	.	105	30	112	0	.	95
DNAH6	1768	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84784866	84784866	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DNAH6	NM_001370	exon11	c.T1610G	p.I537S	.	.	166	35	159	0	.	69
DND1	373863	broad.mit.edu	37	5	140052469	140052469	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DND1	NM_194249	exon3	c.A165G	p.P55P	.	.	32	7	21	1	.	90
DSE	29940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116720771	116720771	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	DSE	NM_001080976	exon2	c.A358T	p.I120F	.	.	78	25	88	0	.	91
ENOX2	10495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129813673	129813673	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ENOX2	NM_182314	exon7	c.A390G	p.V130V	.	.	121	65	148	0	.	131
FAM182B	728882	ucsc.edu	37	20	25755549	25755549	+	RNA	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	.	.	.	48	5	76	2	.	.
FAM194B	220081	hgsc.bcm.edu	37	13	46170744	46170744	+	Missense_Mutation	SNP	G	G	A	rs28667306		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM194B	NM_182542	exon3	c.C397T	p.H133Y	.	.	140	18	185	0	.	68
FAM19A2	338811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	62148740	62148740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM19A2	NM_178539	exon3	c.A172G	p.I58V	.	.	130	37	145	0	.	515
FAM205B	389715	broad.mit.edu	37	9	34833049	34833049	+	RNA	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	.	.	.	86	14	79	0	.	.
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144810754	144810754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAM83H	NM_198488	exon5	c.C877T	p.R293C	.	.	105	34	55	0	.	92
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10076196	10076196	+	Silent	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCD2	NM_001018115	exon4	c.G249C	p.L83L	.	.	133	27	163	0	.	229
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45650881	45650882	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FANCM	NM_020937	exon16	c.4359_4360insA	p.V1453fs	.	.	120	32	148	0	.	569
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187539094	187539094	+	Silent	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FAT1	NM_005245	exon10	c.T8646C	p.N2882N	.	.	95	28	107	0	.	34
FGD6	55785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95603889	95603889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FGD6	NM_018351	exon2	c.A1171C	p.N391H	.	.	85	22	109	0	.	137
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152277443	152277443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon3	c.C9919A	p.Q3307K	.	.	166	101	130	0	.	106
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	152287879	152287879	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	FLG	NM_002016	exon2	c.T54A	p.Y18X	.	.	437	87	327	0	.	106
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	161569259	161569259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GABRG2	NM_198903	exon8	c.G979A	p.V327I	.	.	178	39	168	0	.	95
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	128094293	128094293	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GAPVD1	NM_015635	exon12	c.G2262T	p.R754S	.	.	72	22	82	0	.	93
GPATCH8	23131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42552196	42552196	+	Splice_Site	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GPATCH8	NM_001002909	exon3	c.120+1G>T	.	.	.	106	27	112	0	.	94
GTF3C3	9330	bcgsc.ca	37	2	197657782	197657782	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	GTF3C3	NM_001206774	exon3	c.G309A	p.E103E	.	.	259	12	264	2	.	97
HIF3A	64344	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46815884	46815884	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HIF3A	NM_152795	exon8	c.T999C	p.S333S	.	.	97	26	120	1	.	228
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12122422	12122422	+	Silent	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HIVEP1	NM_002114	exon4	c.A2394T	p.P798P	.	.	211	75	130	0	.	139
HLCS	3141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	38128887	38128887	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HLCS	NM_000411	exon11	c.G1965T	p.G655G	.	.	159	44	155	0	.	157
HMGCLL1	54511	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55378944	55378944	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	HMGCLL1	NM_019036	exon6	c.C534T	p.S178S	.	.	92	49	97	1	.	94
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160494446	160494446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon34	c.A4892G	p.K1631R	.	.	88	25	100	0	.	118
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160523558	160523558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGF2R	NM_000876	exon46	c.T6850G	p.F2284V	.	.	158	31	192	0	.	118
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133790932	133790932	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	IGSF9B	NM_014987	exon18	c.C2688T	p.N896N	.	.	34	10	46	0	.	68
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	156815580	156815580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	INSRR	NM_014215	exon10	c.G2005A	p.D669N	.	.	180	70	108	0	.	1403
KLF15	28999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126071030	126071030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KLF15	NM_014079	exon2	c.G736T	p.V246F	.	.	141	38	137	0	.	91
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	135015133	135015133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KNDC1	NM_152643	exon17	c.G3118T	p.V1040L	.	.	112	35	101	0	.	229
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53223841	53223841	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRT79	NM_175834	exon4	c.A821C	p.Q274P	.	.	107	26	114	0	.	72
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP10-6	NM_198688	exon1	c.C966T	p.S322S	.	.	102	7	116	1	.	90
KRTAP19-1	337882	broad.mit.edu;ucsc.edu;mdanderson.org	37	21	31852477	31852477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP19-1	NM_181607	exon1	c.G160T	p.G54X	.	.	116	23	106	1	.	68
KRTAP4-3	85290	bcgsc.ca	37	17	39324333	39324333	+	Missense_Mutation	SNP	T	T	A	rs12953139	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	KRTAP4-3	NM_033187	exon1	c.A92T	p.Q31L	.	.	151	30	101	0	A|0.046;T|0.954	22
L3MBTL2	83746	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	41616796	41616796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	L3MBTL2	NM_031488	exon7	c.G777T	p.W259C	.	.	47	14	61	1	.	92
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2290105	2290105	+	Silent	SNP	C	C	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_001101391	exon2	c.G1671C	p.G557G	.	.	121	29	166	0	.	.
LOC643387	0	broad.mit.edu;ucsc.edu	37	2	239141650	239141650	+	RNA	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	.	.	.	94	23	135	0	.	.
LYPD6B	130576	hgsc.bcm.edu	37	2	150061778	150061778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_177964	exon4	c.C89T	p.S30L	.	.	96	4	84	0	.	.
MAP10	54627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232943321	232943321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_019090	exon1	c.A2552G	p.Y851C	.	.	113	17	105	0	.	.
MB21D1	115004	broad.mit.edu;bcgsc.ca	37	6	74150010	74150010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MB21D1	NM_138441	exon3	c.G1036A	p.A346T	.	.	303	10	265	0	.	90
MFSD3	113655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	145735205	145735205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MFSD3	NM_138431	exon1	c.G489T	p.W163C	.	.	121	56	53	0	.	69
MIS18BP1	55320	broad.mit.edu	37	14	45687540	45687540	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MIS18BP1	NM_018353	exon12	c.A2787G	p.K929K	.	.	396	6	494	1	.	90
MN1	4330	broad.mit.edu	37	22	28194933	28194933	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MN1	NM_002430	exon1	c.A1599G	p.Q533Q	.	.	56	5	41	2	.	993
MN1	4330	broad.mit.edu	37	22	28194936	28194936	+	Silent	SNP	C	C	T	rs45597040	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MN1	NM_002430	exon1	c.G1596A	p.Q532Q	.	.	57	4	41	1	C|0.963;T|0.037	993
MTHFD2L	441024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	75040279	75040279	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MTHFD2L	NM_001144978	exon2	c.T200C	p.I67T	.	.	78	32	108	0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9088914	9088914	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MUC16	NM_024690	exon1	c.G2901A	p.W967X	.	.	131	35	163	0	.	566
MUC21	394263	bcgsc.ca	37	6	30955008	30955008	+	Silent	SNP	A	A	G	rs138458707	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MUC21	NM_001010909	exon2	c.A1056G	p.T352T	.	.	27	7	31	1	A|0.995;G|0.005	92
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	MUC6	NM_005961	exon31	c.T5966C	p.F1989S	.	.	439	17	504	9	.	23
NADKD1	133686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	36219713	36219713	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NADKD1	NM_001085411	exon5	c.A629G	p.Y210C	.	.	49	9	45	0	.	92
NAT10	55226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	34152419	34152419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NAT10	NM_024662	exon13	c.G1304A	p.S435N	.	.	60	16	58	0	.	92
NBPF10	100132406	broad.mit.edu;bcgsc.ca	37	1	145323656	145323656	+	Missense_Mutation	SNP	A	A	T	rs75252120	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_001039703	exon27	c.A3493T	p.I1165F	.	.	31	6	29	0	A|0.625;T|0.375	.
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	113103884	113103884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NCAM1	NM_001242607	exon15	c.C1616T	p.P539L	.	.	78	22	80	0	.	23
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119054109	119054109	+	Silent	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NLRX1	NM_024618	exon10	c.C2889A	p.V963V	.	.	30	6	31	0	.	92
NPB	256933	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	79860624	79860624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_148896	exon2	c.A378G	p.X126W	.	.	177	53	159	0	.	.
NUDCD3	23386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44425666	44425666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	NUDCD3	NM_015332	exon6	c.G1030T	p.G344C	.	.	66	19	75	0	.	90
OR2T4	127074	bcgsc.ca	37	1	248524967	248524967	+	Missense_Mutation	SNP	A	A	G	rs200915140		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	OR2T4	NM_001004696	exon1	c.A85G	p.M29V	.	.	191	13	194	3	.	68
PCDHB13	56123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140595793	140595793	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB13	NM_018933	exon1	c.C2098A	p.L700I	.	.	60	28	65	0	.	93
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140564287	140564287	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCDHB16	NM_020957	exon1	c.G2153T	p.R718M	.	.	80	45	88	0	.	92
PCK1	5105	broad.mit.edu	37	20	56139233	56139233	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PCK1	NM_002591	exon7	c.A970G	p.R324G	.	.	95	4	128	0	.	227
PEG10	23089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	94293280	94293280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PEG10	NM_001172438	exon2	c.G640A	p.E214K	.	.	62	23	79	0	.	23
PITPNM1	9600	ucsc.edu;bcgsc.ca	37	11	67266192	67266192	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PITPNM1	NM_001130848	exon10	c.G1359A	p.V453V	.	.	38	4	52	0	.	227
POU4F1	5457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	79175699	79175699	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	POU4F1	NM_006237	exon2	c.G1111A	p.E371K	.	.	42	8	51	0	.	515
PYGO2	90780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154931467	154931467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	PYGO2	NM_138300	exon3	c.G1009T	p.V337L	.	.	100	24	59	0	.	227
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	51690041	51690041	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	RAD54L2	NM_015106	exon19	c.G3081A	p.Q1027Q	.	.	72	20	109	0	.	93
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144885835	144885835	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SCRIB	NM_015356	exon23	c.G3396A	p.E1132E	.	.	62	14	45	0	.	228
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67995581	67995581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	SLC12A4,NS,carcinoma,+1	SLC12A4	NM_001145962	exon2	c.C245G	p.S82W	.	.	51	18	84	0	.	91
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	70634966	70634966	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLC8A3	NM_183002	exon2	c.C174T	p.V58V	.	.	76	5	94	0	.	225
SLCO1B3	28234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	21008043	21008043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SLCO1B3	NM_019844	exon4	c.G166A	p.E56K	.	.	139	33	143	0	.	155
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	18852978	18852978	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SMG1	NM_015092	exon41	c.C6605A	p.S2202X	.	.	184	85	181	0	.	1160
SMIM5	643008	broad.mit.edu;mdanderson.org	37	17	73636294	73636294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_001162995	exon2	c.G13A	p.D5N	.	.	52	12	59	1	.	.
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7725465	7725465	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	SORCS2	NM_020777	exon19	c.C2466T	p.D822D	.	.	50	17	68	0	.	91
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36719591	36719591	+	Silent	SNP	A	A	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_025248	exon5	c.T708G	p.A236A	.	.	79	15	63	0	.	.
ST14	6768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130058517	130058517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ST14	NM_021978	exon3	c.G334A	p.E112K	.	.	52	10	60	0	.	94
STAG3L2	442582	bcgsc.ca	37	7	74300114	74300114	+	RNA	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	.	.	.	188	39	226	0	.	.
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	9630121	9630121	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TAS2R1	NM_019599	exon1	c.C24T	p.I8I	.	.	261	119	234	1	.	93
TBATA	219793	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	72541762	72541764	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	NM_152710	exon4	c.70_72del	p.24_24del	.	.	72	10	70	0	.	.
TCHH	7062	hgsc.bcm.edu	37	1	152084224	152084224	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TCHH	NM_007113	exon3	c.A1469G	p.K490R	.	.	120	10	69	0	.	72
TCHH	7062	ucsc.edu	37	1	152084213	152084213	+	Missense_Mutation	SNP	C	C	G	rs199978168	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TCHH	NM_007113	exon3	c.G1480C	p.E494Q	.	.	119	23	68	0	C|0.978;G|0.023	72
TCHH	7062	ucsc.edu	37	1	152084216	152084216	+	Missense_Mutation	SNP	C	C	G	rs201131683	byfrequency	TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TCHH	NM_007113	exon3	c.G1477C	p.E493Q	.	.	118	18	70	0	C|0.986;G|0.013	72
TGM5	9333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43552276	43552276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TGM5	NM_201631	exon3	c.T410A	p.I137N	.	.	55	7	42	0	.	90
THBS4	7060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79351761	79351761	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	THBS4	NM_003248	exon3	c.A446G	p.Q149R	.	.	135	23	85	0	.	90
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63195964	63195964	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM26	NM_178505	exon2	c.A234G	p.P78P	.	.	40	12	56	0	.	90
TMEM51	55092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15541674	15541674	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TMEM51	NM_018022	exon2	c.T91A	p.W31R	.	.	36	16	39	0	.	90
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32064613	32064613	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TNXB	NM_019105	exon3	c.G1017A	p.T339T	.	.	104	23	97	0	.	90
TPO	7173	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	1488563	1488563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TPO	NM_175719	exon9	c.C1534T	p.P512S	.	.	79	18	131	1	.	332
TRAF3IP3	80342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	209953855	209953855	+	Missense_Mutation	SNP	C	C	G	rs147808288		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAF3IP3	NM_025228	exon15	c.C1353G	p.N451K	.	.	121	26	98	0	C|1.000;G|0.000	291
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202250957	202250957	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRAK2	NM_015049	exon14	c.A1947G	p.A649A	.	.	122	36	152	0	.	90
TRIM58	25893	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	248020828	248020828	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRIM58	NM_015431	exon1	c.C280T	p.R94W	.	.	25	4	30	0	.	96
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	230661327	230661327	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRIP12	NM_004238	exon24	c.3571delC	p.H1191fs	.	.	184	46	143	0	.	572
TRMT61A	115708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	103996384	103996384	+	Silent	SNP	T	T	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRMT61A	NM_152307	exon2	c.T69A	p.G23G	.	.	42	11	64	0	.	90
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49723688	49723688	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TROAP	NM_005480	exon12	c.C1213T	p.L405L	.	.	127	8	121	0	.	91
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31325061	31325061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TRPM1	NM_001252020	exon21	c.C2834T	p.A945V	.	.	126	29	170	0	.	94
TTC13	79573	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	231059660	231059660	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TTC13	NM_024525	exon15	c.C1741G	p.P581A	.	.	120	22	77	1	.	92
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179593438	179593438	+	Silent	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	TTN	NM_001267550	exon66	c.A19215G	p.E6405E	.	.	181	54	197	0	.	636
VPS52	6293	ucsc.edu;bcgsc.ca	37	6	33218759	33218759	+	Silent	SNP	C	C	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	VPS52	NM_022553	exon20	c.G2031A	p.A677A	.	.	44	4	45	0	.	95
ZAK	0	ucsc.edu	37	2	174086306	174086306	+	RNA	SNP	A	A	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZAK	.	.	.	.	.	.	38	10	40	0	.	522
ZNF16	7564	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	146157910	146157910	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF16	NM_006958	exon3	c.C263A	p.S88X	.	.	500	48	239	0	.	95
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	71756953	71756953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF366	NM_152625	exon2	c.A371G	p.Y124C	.	.	218	56	163	0	.	91
ZNF467	168544	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149462853	149462853	+	Silent	SNP	G	G	A	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	ZNF467	NM_207336	exon5	c.C738T	p.C246C	.	.	116	30	113	1	.	90
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305940	39305941	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-O8-A75V-01A-11D-A32G-10	TCGA-O8-A75V-10A-01D-A32G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9a1fc125-b2f3-4a19-aeb1-faf45a3ee8ed	296a0e3f-6a54-44cf-bb8d-480cda70d695	.	.	.	.	.	p.Q27R	.	.	.	.	.	.	.	
