Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
AAMP	14	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219134700	219134700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	AAMP	NM_001087	exon1	c.C110G	p.P37R	.	.	475	172	245	1	.	91
ACPT	93650	hgsc.bcm.edu;mdanderson.org	37	19	51298384	51298384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ACPT	NM_033068	exon11	c.G1250A	p.G417E	.	.	14	10	8	0	.	90
ADAMTS7	11173	ucsc.edu	37	15	79067055	79067055	+	Missense_Mutation	SNP	C	C	T	rs2277549	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ADAMTS7	NM_014272	exon12	c.G1787A	p.R596H	.	.	75	11	45	3	C|0.727;T|0.273	226
ADAMTS7	11173	ucsc.edu	37	15	79067099	79067099	+	Silent	SNP	G	G	C	rs142017909	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ADAMTS7	NM_014272	exon12	c.C1743G	p.R581R	.	.	68	9	47	1	G|0.979;C|0.021	226
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51223097	51223097	+	Silent	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	AP4E1	NM_007347	exon7	c.C798T	p.H266H	.	.	107	40	70	0	.	90
BARD1	580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215617259	215617259	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	BARD1	NM_000465	exon7	c.C1589T	p.P530L	.	.	80	36	51	0	.	415
CACNA2D3	55799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	54905638	54905638	+	Silent	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CACNA2D3	NM_018398	exon18	c.C1699A	p.R567R	.	.	198	69	141	0	.	138
CASR	846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121994752	121994752	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CASR	NM_001178065	exon5	c.A1471G	p.I491V	.	.	241	96	168	0	.	97
CC2D1A	54862	hgsc.bcm.edu	37	19	14020723	14020723	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CC2D1A	NM_017721	exon2	c.G148C	p.A50P	.	.	223	22	136	0	.	90
CCNB3	85417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	50090667	50090667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CCNB3	NM_033031	exon10	c.A3853G	p.I1285V	.	.	183	22	131	0	.	482
CEBPZ	10153	broad.mit.edu	37	2	37454714	37454714	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CEBPZ	NM_005760	exon2	c.C1622T	p.S541L	.	.	69	3	44	0	.	91
CHST9	83539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	24497007	24497007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CHST9	NM_031422	exon6	c.A548T	p.Q183L	.	.	88	19	73	1	.	93
CLIC6	54102	broad.mit.edu	37	21	36079593	36079593	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CLIC6	NM_053277	exon2	c.G1390A	p.E464K	.	.	209	4	144	0	.	91
CLIP4	79745	hgsc.bcm.edu	37	2	29386810	29386810	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CLIP4	NM_024692	exon13	c.A1648G	p.R550G	.	.	83	4	67	0	.	91
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	121381587	121381587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	COL14A1	NM_021110	exon47	c.G5174A	p.R1725Q	.	.	40	13	22	0	.	543
COL20A1	57642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	61937235	61937235	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	COL20A1	NM_020882	exon5	c.G340T	p.E114X	.	.	125	19	41	0	.	90
CORO2B	10391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69011111	69011111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	CORO2B	NM_006091	exon9	c.G1042T	p.G348C	.	.	175	64	78	0	.	158
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	51025826	51025826	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DCC	NM_005215	exon27	c.C4057G	p.P1353A	.	.	290	90	204	0	.	225
DRD5	1816	broad.mit.edu	37	4	9784853	9784853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DRD5	NM_000798	exon1	c.C1200G	p.I400M	.	.	419	14	268	3	.	91
DSPP	1834	bcgsc.ca	37	4	88536934	88536934	+	Silent	SNP	C	C	T	rs200948555		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DSPP	NM_014208	exon5	c.C3120T	p.S1040S	.	.	410	16	235	2	.	90
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	480	66	307	3	.	90
DSPP	1834	ucsc.edu	37	4	88537306	88537306	+	Silent	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	DSPP	NM_014208	exon5	c.T3492C	p.D1164D	.	.	466	144	263	5	.	90
DTD2	112487	bcgsc.ca	37	14	31926584	31926584	+	Missense_Mutation	SNP	G	G	A	rs3087952		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_080664	exon1	c.C16T	p.R6W	.	.	65	8	54	0	.	.
EED	8726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85975252	85975260	+	In_Frame_Del	DEL	CTGGTGGCA	CTGGTGGCA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	CTGGTGGCA	CTGGTGGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EED	NM_003797	exon7	c.673_681del	p.225_227del	.	.	118	15	113	0	.	227
EED	8726	ucsc.edu;bcgsc.ca	37	11	85975264	85975264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EED	NM_003797	exon7	c.T685G	p.F229V	.	.	135	25	129	0	.	227
EN2	2020	hgsc.bcm.edu;mdanderson.org	37	7	155251239	155251239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EN2	NM_001427	exon1	c.C167A	p.A56E	.	.	12	6	13	0	.	90
EP400	57634	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132512744	132512744	+	Silent	SNP	G	G	T	rs34531099	byfrequency;alternate_allele	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	EP400	NM_015409	exon27	c.G5292T	p.A1764A	.	.	329	141	135	0	G|0.997;A|0.003	520
FGD5	152273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14861791	14861791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	FGD5	NM_152536	exon1	c.G1213T	p.A405S	.	.	84	37	74	0	.	231
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186673528	186673528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	FSIP2	NM_173651	exon17	c.G19762A	p.V6588M	.	.	67	20	90	0	.	90
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8520429	8520429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	HNRNPM	NM_031203	exon2	c.A254G	p.Q85R	.	.	117	39	70	0	.	68
HSPG2	3339	hgsc.bcm.edu;mdanderson.org	37	1	22182073	22182073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	HSPG2	NM_005529	exon46	c.T5797C	p.C1933R	.	.	16	4	8	0	.	141
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117860190	117860190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	IL10RA	NM_001558	exon3	c.C222A	p.N74K	.	.	308	100	231	0	.	91
IRF4	3662	broad.mit.edu	37	6	394913	394913	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	IRF4	NM_001195286	exon3	c.G309A	p.K103K	.	.	210	6	83	0	.	659
ITGB6	3694	broad.mit.edu	37	2	161056696	161056696	+	Splice_Site	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ITGB6	.	.	.	.	.	.	16	4	19	0	.	227
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	20113881	20113881	+	Silent	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	KAT2B	NM_003884	exon2	c.C360G	p.P120P	.	.	87	31	71	0	.	228
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	97561726	97561726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	KLHL32	NM_052904	exon7	c.G695A	p.R232H	.	.	180	95	183	0	.	94
KRT2	3849	ucsc.edu	37	12	53045642	53045642	+	Silent	SNP	A	A	G	rs117566323	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	KRT2	NM_000423	exon1	c.T285C	p.G95G	.	.	273	28	153	1	A|0.996;G|0.004	92
KRTAP4-9	100132386	broad.mit.edu	37	17	39261693	39261693	+	Missense_Mutation	SNP	A	A	T	rs113059833		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_001146041	exon1	c.A53T	p.D18V	.	.	102	9	76	1	T|1.000;|0.000	.
LINC00619	414260	bcgsc.ca;mdanderson.org	37	10	44340850	44340850	+	RNA	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	.	.	.	.	.	.	205	74	146	0	.	.
LOC440905	0	broad.mit.edu	37	2	130798117	130798117	+	RNA	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	.	.	.	.	.	.	10	3	13	0	.	.
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	21901356	21901356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MLLT10	NM_001195626	exon5	c.G485T	p.C162F	.	.	48	20	50	0	.	658
MLLT10P1	140678	bcgsc.ca	37	20	29637976	29637976	+	RNA	SNP	G	G	C	rs142331172		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	.	.	.	.	.	.	24	8	25	0	.	.
MTERF	7978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	91503047	91503053	+	Frame_Shift_Del	DEL	GAATCCA	GAATCCA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	GAATCCA	GAATCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MTERF	NM_006980	exon3	c.1055_1061del	p.352_354del	.	.	72	11	75	0	.	90
MUC17	140453	bcgsc.ca	37	7	100681266	100681266	+	Missense_Mutation	SNP	C	C	A	rs142126972	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MUC17	NM_001040105	exon3	c.C6569A	p.T2190K	.	.	187	24	102	10	C|0.995;A|0.005	95
MUC17	140453	bcgsc.ca	37	7	100681293	100681293	+	Missense_Mutation	SNP	G	G	A	rs141217694	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MUC17	NM_001040105	exon3	c.G6596A	p.R2199H	.	.	206	23	103	7	G|0.997;A|0.003	95
MUC2	4583	bcgsc.ca	37	11	1093069	1093069	+	Missense_Mutation	SNP	A	A	G	rs201496058		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MUC2	NM_002457	exon30	c.A4888G	p.T1630A	.	.	206	11	135	2	.	90
MUC2	4583	broad.mit.edu	37	11	1092954	1092954	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	MUC2	NM_002457	exon30	c.G4773A	p.T1591T	.	.	240	9	137	1	.	90
NLE1	54475	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33467033	33467033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NLE1	NM_018096	exon3	c.C215T	p.S72L	.	.	288	94	175	1	.	290
NME5	8382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	137465065	137465065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NME5	NM_003551	exon3	c.G222A	p.M74I	.	.	135	41	144	0	.	115
NOTCH2NL	388677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	145281614	145281614	+	Silent	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NOTCH2NL	NM_203458	exon4	c.C544T	p.L182L	.	.	2183	249	1284	1	.	211
NUDCD1	84955	bcgsc.ca	37	8	110301998	110301998	+	Missense_Mutation	SNP	T	T	C	rs2980618	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	NUDCD1	NM_032869	exon5	c.A805G	p.I269V	.	.	176	7	172	2	T|0.657;C|0.343	227
OBSCN	84033	broad.mit.edu;bcgsc.ca	37	1	228482110	228482110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	OBSCN	NM_001271223	exon47	c.G12676A	p.V4226I	.	.	322	11	112	0	.	403
OR51B6	390058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5372775	5372775	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	OR51B6	NM_001004750	exon1	c.C38T	p.T13I	.	.	229	87	148	0	.	70
OVCH1	341350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29626033	29626033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	OVCH1	NM_183378	exon15	c.C1604T	p.S535F	.	.	51	17	63	0	.	210
PDE4DIP	9659	broad.mit.edu	37	1	144855783	144855783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PDE4DIP	NM_014644	exon41	c.C6770T	p.A2257V	.	.	253	6	203	0	.	663
PDE4DIP	9659	ucsc.edu	37	1	144879561	144879561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WGS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PDE4DIP	NM_014644	exon27	c.T3889C	p.C1297R	.	.	35	8	22	0	.	663
PDPN	10630	broad.mit.edu	37	1	13936993	13936993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PDPN	NM_198389	exon3	c.G541T	p.A181S	.	.	410	12	177	1	.	516
PER3	8863	bcgsc.ca	37	1	7890055	7890055	+	Silent	SNP	T	T	A	rs11121034	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PER3	NM_016831	exon18	c.T3021A	p.A1007A	.	.	375	12	139	4	T|0.954;A|0.046	93
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	67591127	67591129	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	PIK3R1,bladder,carcinoma,-1	PIK3R1	NM_181523	exon13	c.1720_1722del	p.574_574del	.	.	108	65	101	0	.	4332
PLEKHA4	57664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49364729	49364729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PLEKHA4	NM_001161354	exon5	c.G295A	p.V99I	.	.	36	10	22	0	.	227
POTEH	23784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	16287641	16287641	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	POTEH	NM_001136213	exon1	c.C245T	p.T82I	.	.	550	152	368	0	.	1
PPP1R1B	84152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37792089	37792089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PPP1R1B	NM_032192	exon7	c.C586T	p.R196C	.	.	75	27	29	0	.	658
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	64148733	64148742	+	Frame_Shift_Del	DEL	TTCGCAGTTT	TTCGCAGTTT	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	TTCGCAGTTT	TTCGCAGTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	PRICKLE2	NM_198859	exon3	c.208_217del	p.70_73del	.	.	156	34	121	0	.	95
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74289942	74289954	+	Frame_Shift_Del	DEL	CCAGATCCTGATG	CCAGATCCTGATG	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	CCAGATCCTGATG	CCAGATCCTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	QRICH2	NM_032134	exon4	c.356_368del	p.119_123del	.	.	115	22	76	0	.	94
RBMXL3	139804	broad.mit.edu	37	X	114424941	114424941	+	Missense_Mutation	SNP	G	G	A	rs62601530		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_001145346	exon1	c.G937A	p.A313T	.	.	341	7	238	1	G|0.928;A|0.072	.
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117237178	117237178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	RFX6	NM_173560	exon8	c.C788T	p.T263M	.	.	143	53	104	0	.	93
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	87520767	87520767	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_016033	exon1	c.C83A	p.S28X	.	.	9	5	20	0	.	.
SELT	0	broad.mit.edu	37	3	150340260	150340260	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	.	.	.	.	.	.	195	5	138	0	.	.
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SHROOM1	NM_133456	exon1	c.C898A	p.P300T	.	.	131	7	112	1	.	91
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19452981	19452981	+	Silent	SNP	A	A	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SLC47A1	NM_018242	exon5	c.A489T	p.P163P	.	.	102	65	94	0	.	90
SNX9	51429	broad.mit.edu;bcgsc.ca	37	6	158296186	158296186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SNX9	NM_016224	exon4	c.C278T	p.S93L	.	.	171	59	118	1	.	226
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7714544	7714544	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	SORCS2	NM_020777	exon15	c.G1953A	p.E651E	.	.	170	70	87	0	.	91
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	149523815	149523815	+	Silent	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_198455	exon103	c.C14625G	p.T4875T	.	.	37	11	24	0	.	.
STARD3	10948	broad.mit.edu;bcgsc.ca	37	17	37813277	37813277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	STARD3	NM_006804	exon3	c.G236A	p.R79H	.	.	163	6	85	0	.	90
STRIP2	57464	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129122874	129122874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_020704	exon20	c.G2241C	p.W747C	.	.	203	76	129	2	.	.
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95909555	95909555	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	NM_152592	exon10	c.C1848T	p.P616P	.	.	170	58	103	0	.	.
TCEB3C	162699	broad.mit.edu	37	18	44555102	44555102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	TCEB3C	NM_145653	exon1	c.C1112T	p.T371M	.	.	996	27	631	0	.	68
TEKT4P2	100132288	broad.mit.edu	37	21	9907198	9907198	+	RNA	SNP	C	C	T	rs71263208		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	.	.	.	.	.	.	.	44	6	24	0	C|0.500;T|0.500	.
TPO	7173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1520727	1520727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	TPO	NM_001206744	exon15	c.G2591T	p.G864V	.	.	116	36	70	0	.	332
TTPA	7274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	63973814	63973814	+	Silent	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	TTPA	NM_000370	exon5	c.A834G	p.Q278Q	.	.	45	17	31	0	.	90
UGT2B11	10720	hgsc.bcm.edu	37	4	70066424	70066424	+	Missense_Mutation	SNP	T	T	C	rs201914215	byfrequency	TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	UGT2B11	NM_001073	exon6	c.A1324G	p.I442V	.	.	53	8	39	0	T|0.848;C|0.151	93
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12422877	12422877	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	VPS13D	NM_015378	exon51	c.T10243C	p.F3415L	.	.	199	103	110	0	.	95
YPEL1	29799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22064931	22064931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	YPEL1	NM_013313	exon2	c.G103A	p.E35K	.	.	398	43	231	0	.	90
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151694605	151694605	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZBTB2	NM_020861	exon2	c.G168C	p.Q56H	.	.	256	86	153	0	.	91
ZNF280C	55609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129349844	129349844	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZNF280C	NM_017666	exon14	c.T1759A	p.S587T	.	.	222	89	155	0	.	132
ZNF3	7551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	99662525	99662525	+	Silent	SNP	G	G	A	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZNF3	NM_017715	exon6	c.C282T	p.H94H	.	.	214	64	100	0	.	91
ZSCAN1	284312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58565260	58565260	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PD-A5DF-01A-11D-A27I-10	TCGA-PD-A5DF-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f1a4f60a-5228-47cd-883f-ff8d2dfe1633	ce137c9c-43df-49e8-82f8-3530d13eecfd	.	ZSCAN1	NM_182572	exon6	c.1068delC	p.G356fs	.	.	155	54	101	0	.	92
