Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABRA	137735	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	107782252	107782252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ABRA	NM_139166	exon1	c.C167A	p.T56N	.	.	124	102	202	2	.	92
ADAMTS12	81792	bcgsc.ca	37	5	33881413	33881415	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS12	NM_030955	exon2	c.298_300del	p.100_100del	.	.	110	54	100	1	.	232
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828114	43828114	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.A2654C	p.K885T	.	.	147	71	147	0	.	795
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	43828156	43828156	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ADAMTS20	NM_025003	exon19	c.T2612C	p.I871T	.	.	120	53	121	0	.	795
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100350158	100350158	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AGL	NM_000644	exon20	c.T2580C	p.V860V	.	.	188	69	173	0	.	92
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247031037	247031037	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AHCTF1	NM_015446	exon25	c.C3192A	p.I1064I	.	.	381	213	242	1	.	97
AICDA	57379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8759531	8759531	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AICDA	NM_020661	exon2	c.T86G	p.L29R	.	.	77	29	47	0	.	229
AIM1L	55057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26655355	26655355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AIM1L	NM_001039775	exon16	c.G4324A	p.E1442K	.	.	59	28	57	0	.	91
ANKRD36BP2	645784	broad.mit.edu	37	2	89102229	89102229	+	RNA	SNP	G	G	A	rs112683162		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	54	5	40	1	.	.
ANKS1A	23294	mdanderson.org	37	6	34857318	34857318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ANKS1A	NM_015245	exon1	c.A139G	p.S47G	.	.	30	11	17	0	.	94
ANKS1A	23294	mdanderson.org	37	6	34857324	34857324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ANKS1A	NM_015245	exon1	c.G145A	p.G49S	.	.	26	11	13	0	.	94
AR	367	hgsc.bcm.edu	37	X	66765176	66765176	+	Missense_Mutation	SNP	A	A	T	rs62636527		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AR	NM_000044	exon1	c.A188T	p.Q63L	.	.	43	8	33	0	A|0.982;T|0.018	661
AR	367	hgsc.bcm.edu	37	X	66765179	66765179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	AR	NM_000044	exon1	c.A191T	p.Q64L	.	.	41	10	33	0	.	661
ATN1	1822	ucsc.edu	37	12	7045906	7045906	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ATN1	NM_001007026	exon5	c.G1476A	p.Q492Q	.	.	42	7	38	0	.	139
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193175188	193175188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ATP13A4	NM_032279	exon15	c.C1741T	p.P581S	.	.	197	81	169	0	.	92
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93742473	93742473	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	BTAF1	NM_003972	exon18	c.G2178T	p.R726S	.	.	67	48	85	0	.	92
C1RL	51279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7249108	7249108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C1RL	NM_016546	exon6	c.A1343G	p.H448R	.	.	91	31	85	0	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6714044	6714046	+	In_Frame_Del	DEL	GTA	GTA	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	GTA	GTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	C3	NM_000064	exon7	c.730_732del	p.244_244del	.	.	42	16	33	0	.	95
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140865851	140865851	+	Silent	SNP	C	C	T	rs201843778		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA1B	NM_001243812	exon11	c.C1350T	p.R450R	.	.	87	37	66	0	.	138
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1902886	1902886	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CACNA2D4	NM_172364	exon38	c.G3349C	p.A1117P	.	.	138	55	104	0	.	23
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85935378	85935378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CADM2	NM_001167675	exon5	c.C430A	p.P144T	.	.	249	88	244	0	.	228
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31010123	31010123	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CAPN13	NM_144575	exon2	c.C69A	p.T23T	.	.	154	63	137	0	.	136
CCDC108	255101	ucsc.edu	37	2	219867596	219867596	+	RNA	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC108	.	.	.	.	.	.	41	20	34	0	.	94
CCDC130	81576	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	13873870	13873870	+	Silent	SNP	G	G	A	rs35254119	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC130	NM_030818	exon10	c.G1179A	p.S393S	.	.	24	10	18	0	G|0.983;A|0.017	90
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449530	128449530	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC136	NM_022742	exon11	c.A1632G	p.T544T	.	.	120	99	158	1	.	24
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111336787	111336787	+	Silent	SNP	C	C	T	rs141258896		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC63	NM_152591	exon10	c.C1200T	p.Y400Y	.	.	76	39	65	0	C|1.000;T|0.000	134
CCDC66	285331	hgsc.bcm.edu	37	3	56650054	56650054	+	Missense_Mutation	SNP	T	T	C	rs111934125		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CCDC66	NM_001141947	exon13	c.T1816C	p.S606P	.	.	145	7	117	0	C|1.000;|0.000	135
CHGA	1113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	93397788	93397788	+	Silent	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHGA	NM_001275	exon6	c.C549G	p.T183T	.	.	14	12	34	0	.	516
CHIC2	26511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54915246	54915246	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CHIC2	NM_012110	exon3	c.A206G	p.N69S	.	.	208	90	183	0	.	1082
CLCF1	23529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67135026	67135026	+	Missense_Mutation	SNP	G	G	T	rs76168219	byfrequency;alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CLCF1	NM_013246	exon2	c.C88A	p.R30S	.	.	78	30	79	0	G|0.997;A|0.003	90
CNR1	1268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88854612	88854612	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CNR1	NM_001160258	exon4	c.A382T	p.T128S	.	.	70	26	56	0	.	92
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137715262	137715262	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	COL5A1	NM_000093	exon61	c.G4645A	p.G1549S	.	.	140	50	114	0	.	524
CSMD3	114788	hgsc.bcm.edu	37	8	113569077	113569140	+	Frame_Shift_Del	DEL	TGGATTGCATCCATAAATGATGGTGCTACCAGCAAAGTGGCCTTGGTCACTGATCTTGTATCCA	TGGATTGCATCCATAAATGATGGTGCTACCAGCAAAGTGGCCTTGGTCACTGATCTTGTATCCA	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	TGGATTGCATCCATAAATGATGGTGCTACCAGCAAAGTGGCCTTGGTCACTGATCTTGTATCCA	TGGATTGCATCCATAAATGATGGTGCTACCAGCAAAGTGGCCTTGGTCACTGATCTTGTATCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.4086_4149del	p.1362_1383del	.	.	16	0	68	0	.	1132
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569137	113569137	+	Silent	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.A4089C	p.G1363G	.	.	20	10	66	0	.	1132
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	8	113569140	113569140	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CSMD3	NM_198123	exon25	c.4086delT	p.F1362fs	.	.	20	11	65	0	.	1132
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11159716	11159716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CTNND2	NM_001332	exon12	c.G2131A	p.V711M	.	.	113	45	96	1	.	293
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	35333758	35333758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	CUL2	NM_001198778	exon7	c.A602G	p.H201R	.	.	199	134	109	0	.	229
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69520835	69520835	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DCAF5	NM_003861	exon9	c.G2568A	p.V856V	.	.	93	28	73	0	.	91
DNAH1	25981	bcgsc.ca	37	3	52420190	52420190	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNAH1	NM_015512	exon55	c.C8640G	p.I2880M	.	.	72	4	40	0	.	67
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	196620969	196620969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNAH7	NM_018897	exon62	c.G11474A	p.S3825N	.	.	327	130	273	0	.	102
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	6565467	6565467	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DNHD1	NM_144666	exon19	c.C3745A	p.H1249N	.	.	62	23	64	0	.	24
DPP9	91039	hgsc.bcm.edu;bcgsc.ca	37	19	4695540	4695540	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DPP9	NM_139159	exon12	c.C1203A	p.P401P	.	.	76	5	42	0	.	91
DSPP	1834	broad.mit.edu	37	4	88536460	88536460	+	Silent	SNP	C	C	T	rs199691318		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DSPP	NM_014208	exon5	c.C2646T	p.S882S	.	.	71	20	42	0	.	90
DSPP	1834	ucsc.edu	37	4	88536457	88536457	+	Silent	SNP	T	T	C	rs142031576		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DSPP	NM_014208	exon5	c.T2643C	p.D881D	.	.	67	2	45	0	.	90
DTX2P1-UPK3BP1-PMS2P11	441263	ucsc.edu	37	7	76631515	76631515	+	RNA	SNP	G	G	A	rs61737189	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	61	14	56	2	G|0.805;A|0.195	.
DZIP3	9666	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108407750	108407750	+	Silent	SNP	C	C	T	rs200425501		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	DZIP3	NM_014648	exon31	c.C3495T	p.C1165C	.	.	253	94	261	1	C|0.999;T|0.001	91
EFCAB7	84455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	63998376	63998376	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EFCAB7	NM_032437	exon4	c.C435T	p.A145A	.	.	316	123	274	1	.	68
EI24	9538	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125451109	125451109	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EI24	.	.	.	.	.	.	106	51	96	0	.	91
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	89391190	89391190	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	EPHA3	NM_005233	exon5	c.G1256T	p.S419I	.	.	81	39	62	0	.	1500
ERCC6L	54821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71426314	71426314	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ERCC6L	NM_017669	exon2	c.T2303C	p.I768T	.	.	109	95	94	1	.	93
ESYT2	57488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	158540904	158540904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ESYT2	NM_020728	exon15	c.G1706A	p.R569H	.	.	62	50	103	0	.	92
EVA1C	59271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	33887198	33887198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_058187	exon8	c.G1024T	p.V342F	.	.	54	33	44	0	.	.
FAM110B	90362	broad.mit.edu	37	8	59059022	59059022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FAM110B	NM_147189	exon5	c.C233T	p.A78V	.	.	37	3	36	0	.	153
FAM179A	165186	broad.mit.edu	37	2	29258378	29258378	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FAM179A	NM_199280	exon17	c.G2274T	p.Q758H	.	.	177	5	140	0	.	26
FCGBP	8857	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40396028	40396028	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FCGBP	NM_003890	exon15	c.G7369A	p.G2457R	.	.	194	24	156	0	.	98
FLG	2312	ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FLG	NM_002016	exon3	c.C7281A	p.A2427A	.	.	236	80	136	2	.	106
FMN2	56776	hgsc.bcm.edu	37	1	240370856	240370856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	FMN2	NM_020066	exon5	c.T2744C	p.L915P	.	.	132	7	52	0	.	145
GALNT5	11227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	158115721	158115721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GALNT5	NM_014568	exon1	c.T1127C	p.V376A	.	.	126	52	114	1	.	290
GPR152	390212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	67219232	67219232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR152	NM_206997	exon1	c.C964G	p.P322A	.	.	61	25	55	0	.	90
GPR35	2859	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	241569984	241569984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GPR35	NM_001195382	exon6	c.C708A	p.D236E	.	.	71	25	68	1	.	93
GRIA3	2892	broad.mit.edu;ucsc.edu	37	X	122538601	122538601	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1336T	p.E446X	.	.	118	98	113	1	.	134
GRIA3	2892	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122538600	122538600	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIA3	NM_000828	exon10	c.G1335T	p.L445L	.	.	117	96	115	1	.	134
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	66838427	66838427	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRIP1	NM_001178074	exon12	c.C1468T	p.Q490X	.	.	171	58	187	0	.	494
GRM1	2911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146708066	146708066	+	Missense_Mutation	SNP	C	C	A	rs201399008	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GRM1	NM_000838	exon7	c.C1643A	p.T548K	.	.	120	49	84	0	.	1080
GYPA	2993	bcgsc.ca	37	4	145041720	145041720	+	Missense_Mutation	SNP	A	A	G	rs7682260	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	GYPA	NM_002099	exon2	c.T59C	p.L20S	.	.	178	27	153	15	A|0.519;G|0.481	514
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	236720605	236720605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HEATR1	NM_018072	exon37	c.G5245A	p.E1749K	.	.	203	64	129	0	.	93
HEG1	57493	hgsc.bcm.edu	37	3	124732434	124732434	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HEG1	NM_020733	exon6	c.T1989C	p.S663S	.	.	100	5	71	0	.	70
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63978599	63978599	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HERC1	NM_003922	exon34	c.T6184C	p.L2062L	.	.	124	67	137	0	.	666
HIST1H3B	8358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26032226	26032226	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HIST1H3B	NM_003537	exon1	c.G63T	p.L21L	.	.	52	19	35	0	.	92
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186017888	186017888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HMCN1	NM_031935	exon42	c.A6494G	p.Q2165R	.	.	129	27	86	0	.	113
HR	55806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	21986325	21986325	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HR	NM_018411	exon2	c.G359C	p.G120A	.	.	52	41	60	0	.	154
HRNR	388697	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152187996	152187996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HRNR	NM_001009931	exon3	c.G6109A	p.G2037S	.	.	407	73	231	0	.	93
HYDIN	54768	broad.mit.edu	37	16	71103269	71103269	+	Silent	SNP	T	T	C	rs144904028		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	HYDIN	NM_001198542	exon14	c.A1956G	p.P652P	.	.	132	4	163	1	.	92
IGHMBP2	3508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68701272	68701272	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IGHMBP2	NM_002180	exon10	c.A1428T	p.P476P	.	.	63	36	72	0	.	90
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62415200	62415200	+	Silent	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	INTS5	NM_030628	exon2	c.T2352A	p.V784V	.	.	135	59	91	0	.	92
IPO9	55705	broad.mit.edu;bcgsc.ca	37	1	201837827	201837827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IPO9	NM_018085	exon16	c.T1907C	p.I636T	.	.	112	62	47	2	.	228
IQCE	23288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2649728	2649728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	IQCE	NM_152558	exon22	c.G2020A	p.V674I	.	.	94	37	65	0	.	226
ITFG3	83986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	312457	312457	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ITFG3	NM_032039	exon8	c.C876T	p.L292L	.	.	72	24	34	0	.	90
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	18	77623988	77623988	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNG2	NM_012283	exon1	c.C321A	p.Y107X	.	.	16	14	13	0	.	90
KCNQ5	56479	broad.mit.edu;mdanderson.org	37	6	73331992	73331992	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KCNQ5	NM_001160132	exon1	c.G75T	p.A25A	.	.	14	6	12	0	.	158
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	34839933	34839933	+	Silent	SNP	C	C	T	rs150651317		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIAA0355	NM_014686	exon12	c.C2700T	p.H900H	.	.	75	35	61	0	C|1.000;T|0.000	91
KIF4B	285643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154394947	154394947	+	Missense_Mutation	SNP	G	G	A	rs199913629	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIF4B	NM_001099293	exon1	c.G1528A	p.A510T	.	.	88	45	61	2	G|0.999;T|0.001	1
KIRREL2	84063	ucsc.edu	37	19	36353846	36353846	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KIRREL2	NM_199180	exon13	c.G1633T	p.E545X	.	.	40	4	54	0	.	93
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30257147	30257147	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KLHL14	NM_020805	exon8	c.A1735G	p.S579G	.	.	142	61	103	0	.	91
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464645	39464645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_001146182	exon1	c.C861A	p.S287R	.	.	45	20	37	0	.	.
KRTAP5-5	439915	bcgsc.ca	37	11	1651211	1651211	+	Silent	SNP	C	C	A	rs190828070	by1000genomes	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	KRTAP5-5	NM_001001480	exon1	c.C141A	p.G47G	.	.	45	13	64	2	C|0.932;A|0.068	23
LCT	3938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	136567036	136567036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LCT	NM_002299	exon8	c.G2881A	p.A961T	.	.	84	30	57	0	.	101
LOC493754	0	ucsc.edu;bcgsc.ca	37	7	66041914	66041914	+	RNA	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	51	16	43	0	.	.
LOX	4015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121411127	121411127	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LOX	NM_002317	exon3	c.T850A	p.Y284N	.	.	220	90	202	0	.	650
LRP3	4037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	33696163	33696163	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRP3	NM_002333	exon5	c.C487T	p.Q163X	.	.	38	20	27	0	.	92
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51021678	51021678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	LRRC4B	NM_001080457	exon3	c.C1292T	p.T431M	.	.	49	20	47	0	.	205
MAML2	84441	bcgsc.ca	37	11	95825257	95825257	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAML2	NM_032427	exon2	c.A1938G	p.Q646Q	.	.	184	9	156	1	.	850
MAML2	84441	ucsc.edu	37	11	95825374	95825374	+	Silent	SNP	T	T	C	rs112603485		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAML2	NM_032427	exon2	c.A1821G	p.Q607Q	.	.	133	42	158	2	C|1.000;|0.000	850
MAML2	84441	ucsc.edu	37	11	95825386	95825386	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAML2	NM_032427	exon2	c.G1809A	p.Q603Q	.	.	126	61	131	1	.	850
MAN1A2	10905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118065534	118065534	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAN1A2	NM_006699	exon13	c.A1881G	p.L627L	.	.	78	43	76	0	.	90
MAP3K10	4294	broad.mit.edu	37	19	40720000	40720000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MAP3K10	NM_002446	exon9	c.A2414C	p.D805A	.	.	19	6	28	8	.	981
MGC45800	0	broad.mit.edu;ucsc.edu	37	4	183063407	183063407	+	RNA	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	13	6	13	0	.	.
MLLT3	4300	broad.mit.edu	37	9	20414313	20414313	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MLLT3	NM_004529	exon5	c.C531T	p.S177S	.	.	147	9	107	1	.	660
MLLT3	4300	broad.mit.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MLLT3	NM_004529	exon5	c.C471T	p.S157S	.	.	82	10	56	1	.	660
MMEL1	79258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	2524344	2524344	+	Silent	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MMEL1	NM_033467	exon20	c.C1929T	p.H643H	.	.	76	36	65	0	.	90
MN1	4330	hgsc.bcm.edu	37	22	28194747	28194747	+	Silent	SNP	C	C	T	rs45554336	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MN1	NM_002430	exon1	c.G1785A	p.V595V	.	.	8	8	7	0	C|0.932;T|0.068	993
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MSH3	NM_002439	exon1	c.G169C	p.A57P	.	.	31	13	31	0	G|0.834;C|0.166	661
MTSS1L	92154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70698047	70698047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MTSS1L	NM_138383	exon15	c.G1777A	p.V593M	.	.	27	19	36	0	.	68
MUC4	4585	broad.mit.edu	37	3	195511211	195511211	+	Missense_Mutation	SNP	C	C	T	rs200964957		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MUC4	NM_018406	exon2	c.G7240A	p.A2414T	.	.	153	8	147	1	C|0.999;T|0.001	90
MUC4	4585	broad.mit.edu	37	3	195511884	195511884	+	Missense_Mutation	SNP	G	G	C	rs71617318		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MUC4	NM_018406	exon2	c.C6567G	p.H2189Q	.	.	59	5	53	1	G|1.000;|0.000	90
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MUC6	NM_005961	exon31	c.T5966C	p.F1989S	.	.	464	13	451	10	.	23
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59500993	59500993	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	MYO1E	NM_004998	exon14	c.G1417T	p.V473L	.	.	95	37	76	0	.	514
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126202239	126202239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NCOA7	NM_001199619	exon7	c.C463A	p.L155I	.	.	230	95	198	0	.	227
NDNF	79625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	121958596	121958596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NDNF	NM_024574	exon4	c.C530A	p.P177H	.	.	196	90	206	0	.	90
NEB	4703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	152497166	152497166	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	NEB	NM_004543	exon61	c.A8388C	p.E2796D	.	.	119	47	109	0	.	145
OR10K1	391109	ucsc.edu;bcgsc.ca	37	1	158435495	158435495	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR10K1	NM_001004473	exon1	c.C144A	p.T48T	.	.	448	257	277	2	.	69
OR14A16	284532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247978677	247978677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	OR14A16	NM_001001966	exon1	c.G355A	p.D119N	.	.	151	102	103	1	.	46
OR4C45	403257	bcgsc.ca;mdanderson.org	37	11	48373963	48373963	+	RNA	SNP	T	T	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	99	37	91	0	.	.
PAPD7	11044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	6737736	6737736	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PAPD7	NM_001171805	exon2	c.C80G	p.P27R	.	.	282	110	266	0	.	69
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140811445	140811445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCDHGA12	NM_032094	exon1	c.C1119A	p.D373E	.	.	74	37	64	0	.	27
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55527146	55527146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PCSK9	NM_174936	exon11	c.G1780A	p.A594T	.	.	176	76	135	0	.	93
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44117597	44117597	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PDE9A	NM_001001570	exon4	c.C291T	p.H97H	.	.	249	68	199	0	.	92
PELI3	246330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66243202	66243202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PELI3	NM_145065	exon8	c.C974A	p.A325E	.	.	104	41	65	0	.	91
PGR	5241	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	100998998	100998998	+	Silent	SNP	G	G	C	rs186653307	by1000genomes	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PGR	NM_000926	exon1	c.C804G	p.V268V	.	.	15	6	25	0	G|0.999;C|0.000	652
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	8113326	8113326	+	Missense_Mutation	SNP	G	G	T	rs150241349		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PLCB1	NM_015192	exon1	c.G28T	p.A10S	.	.	111	55	131	0	G|1.000;T|0.000	297
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118314762	118314762	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNLIP	NM_000936	exon7	c.T644C	p.F215S	.	.	69	48	120	0	.	92
PNMA2	10687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	26365742	26365742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	PNMA2	NM_007257	exon3	c.A530T	p.E177V	.	.	43	36	69	0	.	90
POM121	9883	ucsc.edu	37	7	72413593	72413593	+	Missense_Mutation	SNP	T	T	C	rs71554688	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	POM121	NM_172020	exon11	c.T2266C	p.Y756H	.	.	136	22	126	14	T|0.500;C|0.500	226
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	89720726	89720726	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	PTEN,NS,carcinoma,0	PTEN	NM_000314	exon8	c.877delG	p.G293fs	.	.	95	72	132	0	.	17735
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24734864	24734864	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_004581	exon16	c.A1661T	p.Q554L	.	.	46	20	45	0	.	.
RAI14	26064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34807938	34807938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RAI14	NM_001145525	exon8	c.G364T	p.G122W	.	.	222	95	196	2	.	91
REM2	161253	broad.mit.edu	37	14	23355440	23355440	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	REM2	NM_173527	exon4	c.G727T	p.E243X	.	.	65	5	38	0	.	704
RGS22	26166	bcgsc.ca;mdanderson.org	37	8	100999806	100999806	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RGS22	NM_015668	exon21	c.T3060C	p.I1020I	.	.	24	22	29	1	.	140
RNF145	153830	bcgsc.ca	37	5	158630642	158630642	+	Missense_Mutation	SNP	T	T	C	rs202186112		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	RNF145	NM_001199380	exon2	c.A74G	p.K25R	.	.	72	5	57	1	.	525
SEP15	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	87379756	87379756	+	Silent	SNP	C	C	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SEP15	.	.	.	.	.	.	78	25	63	0	.	68
SERPINA11	256394	ucsc.edu	37	14	94914849	94914849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SERPINA11	NM_001080451	exon2	c.C263A	p.S88Y	.	.	43	4	58	0	.	204
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135176017	135176017	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SETX	NM_015046	exon12	c.A5548G	p.M1850V	.	.	176	66	159	0	.	93
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110015366	110015366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SH3RF3	NM_001099289	exon4	c.C1266G	p.D422E	.	.	60	28	40	0	.	24
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51169904	51169904	+	Silent	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SHANK1	NM_016148	exon22	c.C5313A	p.G1771G	.	.	27	12	41	0	.	153
SIRPB1	10326	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	1552656	1552656	+	Missense_Mutation	SNP	C	C	T	rs139432093	alternate_allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SIRPB1	NM_006065	exon3	c.G461A	p.G154D	.	.	138	55	127	1	C|0.997;A|0.003	91
SLC35B1	10237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47784394	47784394	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SLC35B1	NM_005827	exon2	c.G141A	p.E47E	.	.	68	31	51	0	.	90
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	RNA	SNP	T	T	G	rs689942	bycluster	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	66	8	44	1	T|0.500;G|0.500	.
SLC6A10P	386757	broad.mit.edu	37	16	32890639	32890639	+	RNA	SNP	T	T	C	rs79284655	byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	.	.	.	64	7	42	1	T|0.993;C|0.007	.
SNX33	257364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75942327	75942327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SNX33	NM_153271	exon1	c.C884T	p.T295I	.	.	81	31	68	0	.	91
SON	6651	ucsc.edu	37	21	34923319	34923319	+	Silent	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SON	NM_032195	exon3	c.A1782G	p.L594L	.	.	155	1	159	1	.	97
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	217915436	217915436	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPATA17	NM_138796	exon6	c.A515T	p.K172M	.	.	69	42	50	0	.	69
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54859797	54859797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	SPTBN1	NM_003128	exon17	c.C3659T	p.A1220V	.	.	128	50	85	0	.	140
TARBP1	6894	hgsc.bcm.edu	37	1	234614188	234614188	+	Missense_Mutation	SNP	A	A	G	rs12082990	by2hit2allele	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TARBP1	NM_005646	exon1	c.T662C	p.L221P	.	.	4	4	0	0	.	93
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	169639701	169639701	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	THBS2	NM_003247	exon8	c.C1122A	p.C374X	.	.	31	14	46	0	.	95
TMPRSS11D	9407	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68693026	68693026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TMPRSS11D	NM_004262	exon8	c.C905A	p.P302H	.	.	194	75	141	1	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	.	.	51	39	74	0	C|1.000;|0.000	70225
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179611817	179611817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	TTN	NM_133379	exon46	c.G15310A	p.E5104K	.	.	217	96	182	2	.	636
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	96579585	96579585	+	Silent	SNP	T	T	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	UGGT2	NM_020121	exon18	c.A1983G	p.T661T	.	.	198	88	136	0	.	92
UGT2B10	7365	bcgsc.ca	37	4	69870628	69870628	+	RNA	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	UGT2B10	.	.	.	.	.	.	100	34	90	1	.	65
VN1R4	317703	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	53770065	53770065	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	VN1R4	NM_173857	exon1	c.T854C	p.L285P	.	.	97	39	87	1	.	92
VN1R4	317703	ucsc.edu;mdanderson.org	37	19	53770261	53770261	+	Missense_Mutation	SNP	T	T	C	rs56873934	bycluster;byfrequency	TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	VN1R4	NM_173857	exon1	c.A658G	p.N220D	.	.	93	23	110	0	T|0.500;C|0.500	92
WNT6	7475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219735837	219735837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	WNT6	NM_006522	exon2	c.G169T	p.A57S	.	.	107	47	87	0	.	564
ZG16B	124220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2880717	2880717	+	Silent	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZG16B	NM_145252	exon3	c.C183T	p.G61G	.	.	119	22	87	0	.	91
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71654499	71654499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF638	NM_014497	exon24	c.G5500A	p.V1834I	.	.	26	8	21	0	.	94
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21476555	21476555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF708	NM_021269	exon4	c.T1213G	p.S405A	.	.	62	18	68	0	.	516
ZNF738	148203	ucsc.edu	37	19	21567249	21567249	+	RNA	SNP	C	C	T	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	ZNF738	.	.	.	.	.	.	21	8	19	0	.	68
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_001144989	exon3	c.G996C	p.S332S	.	.	288	84	177	1	.	.
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	NM_001144989	exon3	c.C1010T	p.A337V	.	.	325	113	203	3	.	.
FASLG	356	ucsc.edu;bcgsc.ca	37	1	172628546	172628547	+	Missense_Mutation	DNP	CC	CC	GA	novel		TCGA-QA-A7B7-01A-11D-A32G-10	TCGA-QA-A7B7-10A-01D-A32G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5e551b27-70d1-46fd-9a37-83d2cecac02d	6f59797f-d0a5-43b4-ae29-7f21022909d2	.	.	.	.	.	p.P69E	.	.	.	.	.	.	.	
