Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCE1	6059	broad.mit.edu	37	4	146031286	146031286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ABCE1	NM_002940	exon6	c.A437T	p.Y146F	.	.	102	23	139	23	.	91
ACADS	35	ucsc.edu;bcgsc.ca	37	12	121164932	121164932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ACADS	NM_000017	exon2	c.G150T	p.E50D	.	.	33	4	58	0	.	90
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5200316	5200316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ADAMTS16	NM_139056	exon9	c.T1385C	p.L462S	.	.	92	24	71	0	.	275
ADH1A	124	ucsc.edu	37	4	100203572	100203572	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ADH1A	NM_000667	exon6	c.G759A	p.E253E	.	.	190	3	280	5	.	227
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	80	5	88	1	.	.
ANKRD36BP2	645784	broad.mit.edu	37	2	89102402	89102402	+	RNA	SNP	C	C	T	rs79928486		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	57	7	38	0	C|0.167;T|0.833	.
ANKUB1	389161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	149485434	149485434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001144960	exon5	c.T1015C	p.F339L	.	.	122	20	102	0	.	.
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50306439	50306439	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	AP2A1	NM_014203	exon18	c.G2313A	p.Q771Q	.	.	35	14	34	0	.	92
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	72406835	72406836	+	Frame_Shift_Ins	INS	-	-	TGGGA	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARAP1	NM_001040118	exon24	c.3348_3349insTCCCA	p.Q1116fs	.	.	43	21	62	0	.	91
ARHGAP10	79658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	148984418	148984418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGAP10	NM_024605	exon21	c.C2147T	p.P716L	.	.	65	16	77	0	.	229
ARHGEF11	9826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156917232	156917232	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGEF11	NM_198236	exon26	c.G2352A	p.V784V	.	.	47	22	36	0	.	233
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	73020542	73020542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ARHGEF17	NM_014786	exon1	c.C859T	p.H287Y	.	.	26	15	31	0	.	227
ASTN2	23245	ucsc.edu;bcgsc.ca	37	9	119188314	119188314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ASTN2	NM_014010	exon22	c.G3683T	p.S1228I	.	.	24	4	40	0	.	161
ASXL2	55252	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25965211	25965211	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ASXL2	NM_018263	exon12	c.A3995G	p.N1332S	.	.	58	6	68	1	.	23
ATXN3	4287	hgsc.bcm.edu	37	14	92537354	92537355	+	In_Frame_Ins	INS	-	-	CTGCTGCTGCTGCTGCTGCTG	rs76478261	alternate_allele	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ATXN3	NM_004993	exon10	c.916_917insCAGCAGCAGCAGCAGCAGCAG	p.G306delinsQQQQQQQG	.	.	45	0	44	0	.	522
BCMO1	53630	broad.mit.edu	37	16	81324156	81324156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	BCMO1	NM_017429	exon11	c.G1618A	p.D540N	.	.	32	3	29	0	.	90
C15orf60	283677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73766189	73766189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	C15orf60	NM_001042367	exon2	c.A176C	p.E59A	.	.	86	16	68	0	.	46
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76908085	76908085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CCDC146	NM_020879	exon12	c.T1457C	p.I486T	.	.	149	55	119	0	.	70
CDRT15P1	94158	broad.mit.edu	37	17	13928634	13928634	+	RNA	SNP	T	T	C	rs77995315	byfrequency;by1000genomes	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	11	4	39	0	T|0.809;C|0.191	.
CHD3	1107	broad.mit.edu	37	17	7812537	7812537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHD3	NM_001005271	exon37	c.A5648C	p.H1883P	.	.	35	10	60	9	.	228
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	40085989	40085989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHD6	NM_032221	exon18	c.G2744A	p.R915H	.	.	67	34	70	0	.	238
CHMP6	79643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	78972941	78972941	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHMP6	NM_024591	exon8	c.G594A	p.V198V	.	.	37	13	50	0	.	91
CHUK	1147	broad.mit.edu;bcgsc.ca	37	10	101989281	101989281	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CHUK	NM_001278	exon1	c.G9T	p.R3R	.	.	17	5	25	0	.	961
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	75861697	75861697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COL12A1	NM_004370	exon20	c.A3886G	p.M1296V	.	.	112	37	116	0	.	142
COPA	1314	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	160282950	160282950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COPA	NM_001098398	exon10	c.G850A	p.V284I	.	.	39	5	42	0	.	92
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	83970469	83970469	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	COPS4	NM_016129	exon3	c.A305T	p.Q102L	.	.	49	12	59	0	.	226
COX1	5742	broad.mit.edu;bcgsc.ca	37	MT	5970	5970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	ENST00000361624	exon1	c.G67A	p.G23S	.	.	16	10	47	0	.	.
CREBBP	1387	broad.mit.edu	37	16	3779014	3779014	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	CREBBP	NM_004380	exon31	c.G6034A	p.V2012I	.	.	26	3	47	0	.	1807
DDX47	51202	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	12980267	12980267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DDX47	NM_016355	exon11	c.G1194A	p.M398I	.	.	74	16	103	1	.	226
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	185997721	185997721	+	Silent	SNP	G	G	A	rs61752079	byfrequency	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DGKG	NM_001346	exon9	c.C711T	p.D237D	.	.	75	21	92	0	G|0.999;A|0.001	714
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11784551	11784551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DNAH9	NM_001372	exon55	c.T10627C	p.C3543R	.	.	69	42	82	0	.	168
DPP7	29952	mdanderson.org	37	9	140005117	140005117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	DPP7	NM_013379	exon13	c.C1462A	p.P488T	.	.	13	3	20	0	.	90
EEF2K	29904	broad.mit.edu	37	16	22269906	22269906	+	Missense_Mutation	SNP	G	G	A	rs149639518	byfrequency	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	EEF2K	NM_013302	exon10	c.G1121A	p.R374H	.	.	90	4	80	0	G|1.000;A|0.000	856
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21276594	21276594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	EIF4G3	NM_001198803	exon13	c.G590A	p.S197N	.	.	57	14	27	0	.	91
FAM184A	79632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	119338099	119338099	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FAM184A	NM_024581	exon5	c.A1343G	p.E448G	.	.	292	103	310	0	.	519
FAM194A	131831	broad.mit.edu	37	3	150421569	150421569	+	Silent	SNP	T	T	C	rs142916868	byfrequency	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FAM194A	NM_152394	exon1	c.A117G	p.E39E	.	.	50	8	45	3	T|0.999;C|0.001	93
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8161856	8161856	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FBN3	NM_032447	exon42	c.C5322T	p.C1774C	.	.	30	11	37	0	.	100
FBXL20	84961	bcgsc.ca	37	17	37427053	37427053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FBXL20	NM_032875	exon11	c.C884A	p.A295D	.	.	31	4	31	0	.	659
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216261911	216261911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	FN1	NM_212476	exon23	c.A3553G	p.N1185D	.	.	49	8	61	0	.	584
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	66856725	66856725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	GRIP1	NM_001178074	exon9	c.G1021C	p.A341P	.	.	105	40	97	0	.	494
GSTO1	9446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106025865	106025865	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	GSTO1	NM_004832	exon5	c.C489T	p.T163T	.	.	99	28	131	0	.	90
HEY1	23462	broad.mit.edu	37	8	80677765	80677765	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	HEY1	NM_001040708	exon5	c.G585A	p.A195A	.	.	149	4	82	0	.	658
HHLA1	10086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	133078139	133078139	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001145095	exon15	c.T1546A	p.S516T	.	.	120	15	89	0	.	.
HLA-B	3106	bcgsc.ca	37	6	31324615	31324615	+	Missense_Mutation	SNP	C	C	T	rs1050529	byfrequency	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	HLA-B	NM_005514	exon2	c.G193A	p.A65T	.	.	34	6	28	0	C|0.884;T|0.116	90
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84163813	84163813	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	HSDL1	NM_031463	exon4	c.G444A	p.L148L	.	.	93	20	97	0	.	90
IDO2	169355	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	39836668	39836668	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IDO2	NM_194294	exon4	c.G317C	p.G106A	.	.	29	5	42	0	.	24
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1630796	1630796	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IFT140	NM_014714	exon13	c.G1488A	p.T496T	.	.	63	26	83	0	.	95
IL12A	3592	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	159711492	159711492	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IL12A	NM_000882	exon6	c.T467A	p.L156Q	.	.	125	5	118	0	.	90
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14150478	14150478	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	IL27RA	NM_004843	exon3	c.376+1G>A	.	.	.	65	22	53	0	.	90
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419205	31419205	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ITGAD	NM_005353	exon9	c.A977G	p.K326R	.	.	67	12	55	0	.	226
ITGB3	3690	broad.mit.edu	37	17	45367139	45367139	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ITGB3	NM_000212	exon7	c.T1032A	p.Y344X	.	.	62	5	76	0	.	714
KCNQ4	9132	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	41285059	41285059	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KCNQ4	NM_004700	exon5	c.T749A	p.I250N	.	.	64	17	43	1	.	90
KLHL13	90293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117053617	117053617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KLHL13	NM_001168299	exon5	c.G446A	p.R149K	.	.	113	66	168	0	.	556
KLK14	43847	broad.mit.edu	37	19	51582202	51582202	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KLK14	NM_022046	exon6	c.A521C	p.Y174S	.	.	9	3	19	3	.	226
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52754698	52754698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KRT85	NM_002283	exon9	c.C1463T	p.P488L	.	.	42	18	40	0	.	91
KRTAP5-2	440021	bcgsc.ca	37	11	1619181	1619181	+	Silent	SNP	G	G	A	rs61869704		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KRTAP5-2	NM_001004325	exon1	c.C300T	p.S100S	.	.	27	4	34	1	G|0.500;A|0.500	44
KRTAP5-2	440021	bcgsc.ca	37	11	1619184	1619184	+	Silent	SNP	G	G	A	rs36134435		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	KRTAP5-2	NM_001004325	exon1	c.C297T	p.G99G	.	.	27	5	35	2	G|0.500;A|0.500	44
LGSN	51557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	63990999	63990999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	LGSN	NM_016571	exon4	c.T457G	p.L153V	.	.	135	19	124	0	.	227
LOC283922	0	broad.mit.edu	37	16	74366372	74366372	+	RNA	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	10	4	12	0	.	.
LOC645752	0	broad.mit.edu	37	15	78217296	78217296	+	RNA	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	145	8	153	2	.	.
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	LPPR2	NM_022737	exon6	c.G631T	p.A211S	.	.	42	6	31	1	.	153
LRRC15	131578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	194080170	194080170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	LRRC15	NM_001135057	exon3	c.G1621A	p.A541T	.	.	76	32	81	0	.	71
MED14	9282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	40562816	40562816	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MED14	NM_004229	exon11	c.A1291G	p.I431V	.	.	153	88	214	0	.	289
MPL	4352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43805039	43805039	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MPL	NM_005373	exon4	c.T489C	p.D163D	.	.	145	41	105	0	.	9885
MTNR1A	4543	bcgsc.ca	37	4	187476464	187476464	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MTNR1A	NM_005958	exon1	c.A56G	p.D19G	.	.	38	5	56	1	.	524
MUC4	4585	broad.mit.edu	37	3	195505855	195505855	+	Missense_Mutation	SNP	G	G	T	rs201422998		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	MUC4	NM_018406	exon2	c.C12596A	p.S4199Y	.	.	66	4	50	0	.	90
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T	rs75226570		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	24	4	23	0	C|0.500;T|0.500	.
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119154228	119154228	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NDST3	NM_004784	exon9	c.C1881G	p.S627R	.	.	80	27	119	0	.	153
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70423359	70423359	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NETO1	NM_001201465	exon8	c.T892G	p.F298V	.	.	158	26	152	0	.	94
NHSL1	57224	broad.mit.edu	37	6	138754184	138754184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NHSL1	NM_020464	exon5	c.C1310T	p.A437V	.	.	45	3	51	0	.	68
NOTCH1	4851	broad.mit.edu	37	9	139410120	139410120	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NOTCH1	NM_017617	exon11	c.A1718C	p.D573A	.	.	43	6	59	7	.	5459
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52269532	52269532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	NRD1	NM_002525	exon22	c.A2471G	p.E824G	.	.	81	28	100	0	.	90
OCSTAMP	128506	broad.mit.edu	37	20	45174434	45174434	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_080721	exon2	c.C579A	p.G193G	.	.	37	4	37	1	.	.
OPRM1	4988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	154414480	154414480	+	Missense_Mutation	SNP	G	G	C	rs200463796	alternate_allele	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OPRM1	NM_001008505	exon4	c.G1240C	p.G414R	.	.	84	31	109	0	.	69
OR5M1	390168	broad.mit.edu	37	11	56380259	56380259	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OR5M1	NM_001004740	exon1	c.G720A	p.T240T	.	.	125	51	152	0	.	94
OR7D2	162998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9297230	9297230	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OR7D2	NM_175883	exon1	c.T773C	p.V258A	.	.	60	21	69	0	.	71
OR9K2	441639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55524501	55524501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OR9K2	NM_001005243	exon1	c.A949G	p.N317D	.	.	135	54	131	0	.	69
ORC1	4998	broad.mit.edu	37	1	52859216	52859216	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ORC1	NM_004153	exon6	c.C981A	p.T327T	.	.	202	6	179	1	.	206
OXSM	54995	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	25833159	25833159	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	OXSM	NM_017897	exon2	c.G648T	p.V216V	.	.	154	35	143	1	.	132
PCDH11Y	83259	broad.mit.edu;bcgsc.ca	37	Y	4967709	4967709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_032972	exon2	c.A2090T	p.D697V	.	.	286	169	288	2	.	.
PCDHGB2	56103	broad.mit.edu;bcgsc.ca	37	5	140741649	140741649	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PCDHGB2	NM_018923	exon1	c.A1947G	p.G649G	.	.	31	12	43	5	.	33
PDGFC	56034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	157892010	157892019	+	Frame_Shift_Del	DEL	GGCCGGCCAG	GGCCGGCCAG	-	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	GGCCGGCCAG	GGCCGGCCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PDGFC	NM_016205	exon1	c.37_46del	p.13_16del	.	.	44	11	71	0	.	525
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	7887481	7887481	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PER3	NM_016831	exon17	c.G2468A	p.G823D	.	.	100	38	101	0	.	93
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169867033	169867033	+	Splice_Site	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PHC3	NM_024947	exon6	c.415-1G>C	.	.	.	25	9	39	0	.	227
PIEZO1	9780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88801357	88801357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001142864	exon14	c.A1774G	p.S592G	.	.	34	6	36	0	.	.
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121215700	121215700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	POLQ	NM_199420	exon14	c.C2233A	p.R745S	.	.	59	24	63	0	.	664
PPP1R26	9858	broad.mit.edu	37	9	138377661	138377661	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_014811	exon4	c.C1305T	p.D435D	.	.	13	3	23	0	.	.
PPP3CA	5530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	102117189	102117189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PPP3CA	NM_000944	exon2	c.C143T	p.A48V	.	.	96	25	101	0	.	227
PRRC2B	84726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	134357801	134357801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PRRC2B	NM_013318	exon20	c.G5027T	p.S1676I	.	.	134	37	124	0	.	24
PRRT1	80863	bcgsc.ca	37	6	32119914	32119914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PRRT1	.	.	.	.	.	.	25	7	22	0	.	153
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158913594	158913594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	PYHIN1	NM_152501	exon6	c.G1017T	p.R339S	.	.	183	29	177	0	.	94
RASGRP2	10235	broad.mit.edu;mdanderson.org	37	11	64496461	64496461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RASGRP2	NM_001098671	exon15	c.C1645T	p.R549W	.	.	14	5	19	0	.	227
RBBP8	5932	broad.mit.edu	37	18	20548817	20548817	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RBBP8	NM_203292	exon5	c.G297T	p.M99I	.	.	161	4	179	1	.	659
RBMXL3	139804	broad.mit.edu	37	X	114426338	114426338	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001145346	exon1	c.C2334A	p.R778R	.	.	19	3	15	0	.	.
RFC3	5983	broad.mit.edu;bcgsc.ca	37	13	34398073	34398073	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RFC3	NM_002915	exon3	c.T245A	p.I82N	.	.	164	7	234	1	.	227
RHOU	58480	broad.mit.edu;mdanderson.org	37	1	228871746	228871746	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RHOU	NM_021205	exon1	c.T257A	p.F86Y	.	.	20	7	16	0	.	659
RIPK2	8767	hgsc.bcm.edu	37	8	90796369	90796370	+	Splice_Site	INS	-	-	AAAA	rs71268283	alternate_allele	TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RIPK2	NM_003821	exon8	c.1029+2->AAAA	.	.	.	134	0	75	0	-|1.000;|0.000	523
RNASE1	6035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21269973	21269973	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RNASE1	NM_198235	exon3	c.C255T	p.V85V	.	.	135	65	130	0	.	90
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5754691	5754691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RNF216	NM_207111	exon11	c.C1826G	p.S609C	.	.	62	20	54	0	.	274
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	55539235	55539235	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RP1	NM_006269	exon4	c.T2793C	p.P931P	.	.	109	15	107	0	.	102
RP1L1	94137	hgsc.bcm.edu	37	8	10466938	10466938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RP1L1	NM_178857	exon4	c.C4670A	p.A1557E	.	.	57	4	49	0	.	139
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237693789	237693789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	RYR2	NM_001035	exon25	c.A2885G	p.K962R	.	.	68	15	59	0	.	158
SALL3	27164	bcgsc.ca	37	18	76756939	76756939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SALL3	NM_171999	exon3	c.C3520T	p.R1174C	.	.	59	5	48	0	.	155
SARDH	1757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	136597702	136597702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SARDH	NM_007101	exon3	c.C353T	p.P118L	.	.	46	23	34	0	.	90
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115782757	115782757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SEMA6A	NM_020796	exon19	c.C2645T	p.P882L	.	.	110	36	129	0	.	92
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	14181674	14181674	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SGCZ	NM_139167	exon3	c.C274T	p.R92X	.	.	48	9	61	0	.	93
SH2B2	10603	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	101944556	101944556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	.	.	.	.	.	.	51	15	76	0	.	.
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	77660340	77660340	+	Silent	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SHROOM3	NM_020859	exon5	c.A1014C	p.S338S	.	.	43	10	67	0	.	93
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	84270639	84270639	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SNAP91	NM_001242792	exon26	c.G2470C	p.V824L	.	.	124	40	120	0	.	23
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	107956286	107956286	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SOBP	NM_018013	exon6	c.G2238A	p.P746P	.	.	38	12	39	0	.	91
SOX21	11166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	95363707	95363707	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SOX21	NM_007084	exon1	c.C597T	p.T199T	.	.	18	9	26	0	.	514
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136057110	136057110	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	STAG1	NM_005862	exon34	c.A3763C	p.M1255L	.	.	144	29	128	0	.	228
STK25	10494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242439594	242439594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	STK25	NM_006374	exon5	c.A421G	p.I141V	.	.	64	20	85	0	.	978
SYNE2	23224	broad.mit.edu	37	14	64494296	64494296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	SYNE2	NM_182914	exon43	c.G6499T	p.A2167S	.	.	123	5	144	0	.	164
TBX4	9496	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	59560352	59560352	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TBX4	NM_018488	exon8	c.T1113A	p.P371P	.	.	25	6	43	0	.	227
TICRR	90381	broad.mit.edu	37	15	90168410	90168410	+	Silent	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_152259	exon20	c.A4869C	p.S1623S	.	.	18	7	30	7	.	.
TLK2	11011	broad.mit.edu	37	17	60685478	60685478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TLK2	NM_006852	exon21	c.C2048T	p.P683L	.	.	110	4	151	0	.	464
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	74355007	74355007	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TMEM2	NM_001135820	exon5	c.T1176C	p.S392S	.	.	53	9	51	0	.	92
TMEM229A	730130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123672011	123672011	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001136002	exon1	c.C1047G	p.I349M	.	.	54	13	37	0	.	.
TRIM72	493829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31235616	31235616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TRIM72	NM_001008274	exon7	c.C974T	p.P325L	.	.	39	18	44	0	.	44
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	72958753	72958753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TRPA1	NM_007332	exon17	c.C2056A	p.L686I	.	.	121	14	63	0	.	230
TSPAN11	441631	ucsc.edu	37	12	31116931	31116931	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	TSPAN11	NM_001080509	exon3	c.G255T	p.E85D	.	.	45	4	35	0	.	68
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49848783	49848783	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	UBA7	NM_003335	exon9	c.G1045C	p.V349L	.	.	81	38	80	0	.	228
UIMC1	51720	broad.mit.edu	37	5	176409613	176409613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	UIMC1	NM_016290	exon2	c.C4T	p.P2S	.	.	218	6	180	0	.	208
USP17L2	377630	bcgsc.ca;mdanderson.org	37	8	11996022	11996022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	USP17L2	NM_201402	exon1	c.A248G	p.Q83R	.	.	103	25	108	0	.	435
VEGFB	7423	broad.mit.edu	37	11	64005040	64005040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	VEGFB	NM_003377	exon6	c.A559C	p.T187P	.	.	19	9	30	6	.	90
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	12414692	12414692	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	VWDE	NM_001135924	exon8	c.C1186A	p.Q396K	.	.	131	32	106	0	.	68
ZAP70	7535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98340508	98340508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZAP70	NM_001079	exon3	c.C9A	p.D3E	.	.	20	14	23	0	.	955
ZFP28	140612	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57058902	57058902	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZFP28	NM_020828	exon3	c.C326G	p.A109G	.	.	130	44	123	1	.	91
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	52732378	52732378	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZFYVE9	NM_004799	exon6	c.A2330C	p.N777T	.	.	62	9	45	0	.	230
ZNF17	7565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57931549	57931549	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF17	NM_006959	exon3	c.A689G	p.N230S	.	.	84	34	59	0	.	90
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720356	21720356	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF429	NM_001001415	exon4	c.A1501G	p.K501E	.	.	29	10	33	0	.	516
ZNF454	285676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178391941	178391941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF454	NM_001178089	exon5	c.A536G	p.E179G	.	.	87	10	78	0	.	93
ZNF469	84627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	88499415	88499415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	.	NM_001127464	exon2	c.C5453T	p.T1818M	.	.	94	23	74	0	.	.
ZNF470	388566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57088623	57088623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF470	NM_001001668	exon6	c.A826G	p.R276G	.	.	132	26	93	0	.	92
ZNF624	57547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16527675	16527675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF624	NM_020787	exon6	c.A525G	p.I175M	.	.	90	54	160	0	.	154
ZNF628	89887	hgsc.bcm.edu	37	19	55993790	55993790	+	Silent	SNP	A	A	G	rs7254184		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZNF628	NM_033113	exon3	c.A1230G	p.E410E	.	.	8	5	0	0	A|0.440;G|0.560	22
ZPBP	11055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	49977181	49977181	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M3-01A-11D-A32G-10	TCGA-RC-A6M3-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	00fb960e-81b6-45ea-bf27-b39c7dcdce6a	58134b29-9c26-4b08-8b60-e053d9564b76	.	ZPBP	NM_007009	exon8	c.A999T	p.G333G	.	.	69	14	64	0	.	90
