Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA3	21	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2338103	2338103	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCA3	NM_001089	exon21	c.C2928A	p.S976S	.	.	23	11	37	1	.	1015
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94510167	94510167	+	Splice_Site	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCA4	NM_000350	exon21	c.3050+2T>G	.	.	.	86	31	79	0	.	162
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43402429	43402429	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABCC10	NM_001198934	exon4	c.G1451T	p.R484L	.	.	103	29	53	0	.	96
ABRA	137735	broad.mit.edu	37	8	107781754	107781754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ABRA	NM_139166	exon1	c.C665A	p.S222Y	.	.	100	4	52	0	.	92
ADAM11	4185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42854925	42854925	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ADAM11	NM_002390	exon22	c.C1857T	p.I619I	.	.	64	28	63	0	.	227
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	33649699	33649699	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ADAMTS12	NM_030955	exon8	c.T1294C	p.W432R	.	.	46	14	30	0	.	232
AFAP1L1	134265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	148687115	148687115	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AFAP1L1	NM_001146337	exon7	c.G686C	p.R229P	.	.	56	23	45	0	.	136
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105414443	105414443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AHNAK2	NM_138420	exon7	c.G7345T	p.V2449L	.	.	57	20	60	0	.	47
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	17375399	17375399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AHR	NM_001621	exon9	c.G1149T	p.Q383H	.	.	76	26	71	0	.	227
AKR7L	246181	ucsc.edu	37	1	19595825	19595825	+	RNA	SNP	G	G	A	rs200837266	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	AKR7L	.	.	.	.	.	.	84	1	60	0	G|0.996;A|0.004	90
ANAPC5	51433	ucsc.edu	37	12	121779809	121779809	+	Silent	SNP	T	T	C	rs61757697		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ANAPC5	NM_016237	exon5	c.A654G	p.Q218Q	.	.	13	5	11	0	.	290
ANKRD30BL	554226	broad.mit.edu	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	111	7	64	1	.	.
ANXA6	309	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	150516818	150516818	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ANXA6	NM_001155	exon6	c.A383G	p.H128R	.	.	74	28	66	1	.	22
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21236253	21236253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOB	NM_000384	exon25	c.C3995G	p.S1332C	.	.	56	20	59	0	.	175
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21255274	21255274	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOB	NM_000384	exon10	c.A1304G	p.D435G	.	.	18	6	42	0	.	175
APOOL	139322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84301522	84301522	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	APOOL	NM_198450	exon2	c.A86G	p.E29G	.	.	505	250	560	0	.	130
ATMIN	23300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81076059	81076059	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ATMIN	NM_015251	exon3	c.T636C	p.T212T	.	.	31	14	32	0	.	68
ATPAF1	64756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47110923	47110923	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ATPAF1	NM_022745	exon7	c.A663G	p.L221L	.	.	42	27	34	0	.	90
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	99641711	99641711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BCL11B	NM_138576	exon4	c.T1462A	p.S488T	.	.	27	13	28	0	.	1147
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32706429	32706429	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BIRC6	NM_016252	exon38	c.G7450C	p.D2484H	.	.	215	110	210	0	.	233
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	13601419	13601419	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_148894	exon10	c.A7105T	p.S2369C	.	.	135	50	144	0	.	.
BTLA	151888	broad.mit.edu;ucsc.edu	37	3	112190146	112190146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	BTLA	NM_181780	exon3	c.C460A	p.L154I	.	.	38	4	65	0	.	90
C10orf76	79591	ucsc.edu	37	10	103766365	103766365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	C10orf76	NM_024541	exon14	c.C980T	p.T327M	.	.	42	4	53	0	.	90
C1orf180	439927	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85096333	85096333	+	RNA	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	112	48	73	0	.	.
C1orf27	54953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186348970	186348970	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	C1orf27	NM_001164245	exon2	c.T53A	p.I18K	.	.	203	82	120	0	.	23
CAPN14	440854	ucsc.edu	37	2	31416080	31416080	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_001145122	exon10	c.C1031A	p.A344E	.	.	35	4	38	0	.	.
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2987241	2987241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CARD11	NM_032415	exon3	c.C188T	p.A63V	.	.	121	61	118	0	.	870
CARD8	22900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48734142	48734142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CARD8	NM_001184900	exon6	c.C664G	p.L222V	.	.	28	8	27	0	.	227
CD300LB	124599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72519756	72519756	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CD300LB	NM_174892	exon3	c.C516T	p.T172T	.	.	87	34	77	0	.	91
CDC42BPA	8476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	227216680	227216680	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CDC42BPA	NM_003607	exon29	c.C4005A	p.T1335T	.	.	56	14	26	0	.	549
CES1	1066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55850865	55850865	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CES1	NM_001025195	exon8	c.T916C	p.S306P	.	.	60	9	53	0	.	68
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117307000	117307000	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CFTR	NM_000492	exon27	c.C4281T	p.I1427I	.	.	105	47	89	0	.	518
CHML	1122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	241799048	241799048	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CHML	NM_001821	exon1	c.A21C	p.T7T	.	.	197	51	130	0	.	96
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	136700608	136700608	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CHRM2	NM_001006632	exon3	c.996delA	p.P332fs	.	.	76	40	73	0	.	94
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	130929424	130929424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CIZ1	NM_001257975	exon16	c.C2483A	p.S828Y	.	.	60	29	53	0	.	92
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137748665	137748665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CLDN18	NM_016369	exon4	c.T530C	p.V177A	.	.	62	33	106	0	.	92
CLIP2	7461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73752825	73752825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CLIP2	NM_032421	exon3	c.G169A	p.A57T	.	.	79	34	72	0	.	93
CLMP	79827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122954395	122954395	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CLMP	NM_024769	exon4	c.T549A	p.S183S	.	.	44	10	61	0	.	91
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88249211	88249211	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CNBD1	NM_173538	exon6	c.T642C	p.Y214Y	.	.	153	53	87	0	.	3
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46911137	46911137	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL18A1	NM_130445	exon22	c.2068-2A>T	.	.	.	165	69	146	0	.	90
COL2A1	1280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48370680	48370680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL2A1	NM_001844	exon48	c.A3350T	p.D1117V	.	.	41	17	55	0	.	92
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	107423750	107423750	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	COL4A6	NM_001847	exon25	c.T2129A	p.L710X	.	.	120	53	114	0	.	199
COX3	5742	broad.mit.edu;bcgsc.ca	37	MT	9915	9915	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	ENST00000362079	exon1	c.G709A	p.A237T	.	.	531	486	22	0	.	.
CPA5	93979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	130002351	130002351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CPA5	NM_080385	exon8	c.C607A	p.H203N	.	.	35	22	34	0	.	92
CRLF1	9244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18710417	18710417	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	CRLF1,brain,glioma,+1	CRLF1	NM_004750	exon2	c.C355A	p.R119S	.	.	45	18	39	0	.	514
CROCC	9696	broad.mit.edu	37	1	17280821	17280821	+	Missense_Mutation	SNP	G	G	C	rs6669627	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CROCC	NM_014675	exon22	c.G3290C	p.R1097P	.	.	77	4	62	0	G|0.993;C|0.007	137
CROCC	9696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17280833	17280833	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CROCC	NM_014675	exon22	c.G3302T	p.S1101I	.	.	71	31	58	0	.	137
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	53553988	53553988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CSAD	NM_015989	exon14	c.A1163C	p.D388A	.	.	33	5	29	0	.	91
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113529405	113529405	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CSMD3	NM_198123	exon28	c.T4614A	p.T1538T	.	.	125	14	72	0	.	1132
CTBP2	1488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	126715391	126715391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CTBP2	NM_022802	exon1	c.A938T	p.Q313L	.	.	30	27	74	0	.	90
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266098	41266098	+	Missense_Mutation	SNP	A	A	T	rs121913396	bycluster	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	CTNNB1,gallbladder,other,+1	CTNNB1	NM_001098209	exon3	c.A95T	p.D32V	.	.	150	73	122	0	.	24361
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180851443	180851443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CWC22	NM_020943	exon4	c.A185G	p.Y62C	.	.	60	23	46	0	.	90
CYP11B1	1584	ucsc.edu	37	8	143956706	143956706	+	Silent	SNP	G	G	A	rs5293	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	CYP11B1	NM_000497	exon7	c.C1144T	p.L382L	.	.	69	16	50	5	G|0.980;A|0.020	94
DBC1	1620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121929740	121929740	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DBC1	NM_014618	exon8	c.C1908T	p.G636G	.	.	87	46	63	1	.	582
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	121930107	121930107	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DBC1	NM_014618	exon8	c.C1541A	p.T514N	.	.	68	25	57	0	.	582
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155256019	155256019	+	Splice_Site	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DCHS2	NM_017639	exon9	c.1216+1G>C	.	.	.	26	9	47	0	.	94
DDX1	1653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15736869	15736869	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DDX1	NM_004939	exon4	c.A144T	p.T48T	.	.	528	236	474	1	.	253
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142190927	142190927	+	Missense_Mutation	SNP	C	C	T	rs201075864		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DENND3	NM_014957	exon17	c.C2678T	p.A893V	.	.	66	16	25	0	C|0.999;T|0.001	91
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31576572	31576572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DENND5B	NM_144973	exon11	c.A2429T	p.Q810L	.	.	134	85	134	0	.	24
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38802359	38802359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DNAH8	NM_001206927	exon32	c.G4307A	p.G1436E	.	.	256	70	177	0	.	615
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225652011	225652011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DOCK10	NM_014689	exon49	c.A5522T	p.E1841V	.	.	61	24	73	0	.	92
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37618611	37618611	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DOPEY2	NM_005128	exon19	c.C4333T	p.L1445L	.	.	49	14	30	0	.	91
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	137787109	137787109	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DZIP1L	NM_173543	exon13	c.A1716C	p.P572P	.	.	78	17	86	0	.	92
DZIP3	9666	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108405433	108405433	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	DZIP3	NM_014648	exon28	c.3149+2T>A	.	.	.	152	40	202	1	.	91
EFHC2	80258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	44109644	44109644	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	EFHC2	NM_025184	exon5	c.C654A	p.T218T	.	.	85	33	91	0	.	135
ENPP6	133121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185074757	185074757	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ENPP6	NM_153343	exon2	c.G371A	p.W124X	.	.	113	55	130	0	.	90
ERP44	23071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	102784454	102784454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ERP44	NM_015051	exon5	c.G341A	p.R114H	.	.	243	52	220	0	.	90
ESRRA	2101	ucsc.edu	37	11	64082579	64082579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ESRRA	NM_004451	exon6	c.G849T	p.E283D	.	.	42	4	39	0	.	90
FAIM3	9214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207087190	207087190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FAIM3	NM_005449	exon2	c.A287G	p.E96G	.	.	190	52	133	0	.	90
FAM163A	148753	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	179783084	179783084	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FAM163A	NM_173509	exon5	c.T264C	p.C88C	.	.	57	20	62	1	.	91
FAM189A1	23359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	29429300	29429300	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FAM189A1	NM_015307	exon6	c.C728T	p.P243L	.	.	21	8	28	0	.	22
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13612450	13612450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FBLN2	NM_001998	exon2	c.T595G	p.Y199D	.	.	62	23	41	0	.	91
FBXO44	93611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	11718615	11718615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FBXO44	NM_033182	exon4	c.G418A	p.D140N	.	.	39	18	47	0	.	227
FKBP9L	360132	broad.mit.edu;ucsc.edu	37	7	55750419	55750419	+	RNA	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FKBP9L	.	.	.	.	.	.	69	40	70	1	.	84
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154961247	154961247	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FLAD1	NM_025207	exon2	c.C1039A	p.P347T	.	.	71	25	41	0	.	93
FOSL1	8061	hgsc.bcm.edu	37	11	65667796	65667796	+	Silent	SNP	G	G	A	rs1058068	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FOSL1	NM_005438	exon1	c.C15T	p.F5F	.	.	5	5	0	0	G|0.603;A|0.397	522
FOXM1	2305	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2983155	2983155	+	Missense_Mutation	SNP	G	G	A	rs143720765	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FOXM1	NM_001243089	exon2	c.C490T	p.R164W	.	.	141	78	145	1	G|1.000;A|0.000	227
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	69221075	69221075	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FRMD4B	NM_015123	exon23	c.C3042T	p.N1014N	.	.	143	53	171	0	.	72
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	186670102	186670102	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FSIP2	NM_173651	exon17	c.G16336T	p.E5446X	.	.	168	85	217	0	.	90
FUT5	2527	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	19	5866696	5866696	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	FUT5	NM_002034	exon2	c.A1041T	p.A347A	.	.	115	41	115	0	.	90
GLB1	2720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33110391	33110391	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GLB1	NM_000404	exon3	c.A317T	p.Y106F	.	.	78	35	75	0	.	135
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134188589	134188589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GLB1L3	NM_001080407	exon19	c.C1844A	p.P615H	.	.	84	37	120	0	.	69
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105858703	105858703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GPR45	NM_007227	exon1	c.G388A	p.V130M	.	.	117	64	114	0	.	154
GRIK1-AS2	100379661	ucsc.edu	37	21	30968655	30968655	+	RNA	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	14	9	11	0	.	.
GRIN2D	2906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	48925128	48925128	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	GRIN2D	NM_000836	exon10	c.T2178A	p.Y726X	.	.	87	28	93	0	.	156
H1FOO	132243	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	129266304	129266304	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	H1FOO	NM_153833	exon2	c.C159A	p.P53P	.	.	43	10	85	0	.	91
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	73615218	73615218	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HCN4	NM_005477	exon8	c.C3216T	p.P1072P	.	.	21	14	29	0	.	96
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186056637	186056637	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HMCN1	NM_031935	exon60	c.A9223T	p.T3075S	.	.	113	44	85	0	.	113
HMGN5	79366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	80370663	80370663	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HMGN5	NM_030763	exon7	c.G334T	p.G112X	.	.	532	257	547	0	.	130
HNRNPH1	3187	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	179045165	179045165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HNRNPH1	NM_001257293	exon6	c.G696T	p.R232S	.	.	83	51	104	2	.	22
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	100995494	100995494	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HPSE2	NM_001166246	exon1	c.A66T	p.L22L	.	.	102	49	103	0	.	91
HTR3D	200909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183756700	183756700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HTR3D	NM_001163646	exon8	c.C1302A	p.F434L	.	.	85	23	95	0	.	90
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	HTR6	NM_000871	exon3	c.G1045T	p.A349S	.	.	47	11	39	2	.	91
IDI1	3422	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	1094803	1094803	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IDI1	NM_004508	exon2	c.140+1G>A	.	.	.	52	22	56	0	.	90
IFNA6	3443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21350829	21350829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IFNA6	NM_021002	exon1	c.T58A	p.C20S	.	.	69	23	87	0	.	68
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	105011034	105011034	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IL1RAPL2	NM_017416	exon11	c.A1441T	p.R481X	.	.	236	112	227	0	.	194
IL31RA	133396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	55178923	55178923	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IL31RA	NM_001242637	exon5	c.A506T	p.K169I	.	.	114	54	122	0	.	91
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712723	121712723	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ILDR1	NM_001199799	exon7	c.A873T	p.K291N	.	.	30	17	25	0	.	91
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62516654	62516654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	INADL	NM_176877	exon31	c.A4049T	p.E1350V	.	.	42	20	48	0	.	94
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493776	77493777	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT	rs71125518	alternate_allele	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	IRF2BPL	NM_024496	exon1	c.360_361insACAGCAGCAGCA	p.Q120delinsQQQQQ	.	.	28	17	30	0	CTG|1.000;|0.000	90
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	145532113	145532113	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ITGA10	NM_003637	exon8	c.759-2A>T	.	.	.	24	11	26	0	.	231
ITGA11	22801	ucsc.edu	37	15	68628046	68628046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ITGA11	NM_001004439	exon12	c.C1414T	p.R472W	.	.	44	4	38	0	.	538
ITGA9	3680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37574811	37574811	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ITGA9	NM_002207	exon14	c.G1380T	p.R460S	.	.	43	22	45	0	.	715
ITIH6	347365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54783459	54783459	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_198510	exon8	c.C3048T	p.S1016S	.	.	47	22	37	0	.	.
KANSL2	54934	ucsc.edu;bcgsc.ca	37	12	49061538	49061538	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_017822	exon7	c.C911A	p.A304D	.	.	23	4	32	0	.	.
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211093249	211093249	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNH1	NM_172362	exon7	c.A1195T	p.S399C	.	.	227	70	138	0	.	94
KCNH3	23416	broad.mit.edu;mdanderson.org	37	12	49943273	49943273	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNH3	NM_012284	exon9	c.C1518T	p.R506R	.	.	35	11	47	0	.	90
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88652001	88652001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNK10	NM_138318	exon7	c.T1510A	p.S504T	.	.	254	122	219	1	.	95
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133192469	133192469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KCNQ3	NM_004519	exon4	c.C712A	p.L238M	.	.	57	9	35	0	.	138
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27751968	27751968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA0556	NM_015202	exon15	c.T2350A	p.W784R	.	.	26	12	26	0	.	141
KIAA1109	84162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123268771	123268771	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1109	NM_015312	exon74	c.G12966A	p.Q4322Q	.	.	105	40	131	1	.	80
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33235646	33235646	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1522	NM_020888	exon6	c.A866T	p.E289V	.	.	64	24	50	0	.	90
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	180904469	180904469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIAA1614	NM_020950	exon5	c.T1424A	p.V475E	.	.	47	22	31	0	.	26
KIF18B	146909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43010040	43010040	+	Splice_Site	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIF18B	NM_001264573	exon10	c.1238+1G>T	.	.	.	27	11	22	0	.	70
KIF20B	9585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91520384	91520384	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KIF20B	NM_016195	exon28	c.T4662C	p.N1554N	.	.	108	54	88	1	.	93
KRT25	147183	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38907463	38907463	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KRT25	NM_181534	exon4	c.T785A	p.L262H	.	.	74	36	89	1	.	92
KRT31	3881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39550414	39550414	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KRT31	NM_002277	exon7	c.A1105T	p.S369C	.	.	53	27	44	0	.	90
KTN1	3895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	56122805	56122805	+	Silent	SNP	A	A	G	rs143735954		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	KTN1	NM_004986	exon29	c.A2847G	p.L949L	.	.	278	127	249	1	A|1.000;G|0.000	1147
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	150005471	150005471	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	LATS1,NS,carcinoma,+1	LATS1	NM_001270519	exon4	c.A754T	p.R252X	.	.	52	46	88	0	.	992
LCAT	3931	broad.mit.edu	37	16	67976298	67976298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	LCAT	NM_000229	exon5	c.G716T	p.G239V	.	.	61	4	36	0	.	44
LOC392196	0	broad.mit.edu	37	8	11985968	11985968	+	RNA	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	15	9	13	0	.	.
LYL1	4066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	13211833	13211833	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	LYL1	NM_005583	exon2	c.C153T	p.S51S	.	.	32	8	45	0	.	658
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39929343	39929343	+	Silent	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MACF1	NM_012090	exon91	c.A15561C	p.G5187G	.	.	134	65	92	0	.	165
MAGEA8	4107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149013280	149013280	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MAGEA8	NM_005364	exon3	c.T234A	p.T78T	.	.	62	27	56	0	.	130
MAML2	84441	broad.mit.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MAML2	NM_032427	exon2	c.G1788A	p.Q596Q	.	.	107	9	96	0	C|0.250;T|0.750	850
MAML2	84441	ucsc.edu	37	11	95825383	95825383	+	Silent	SNP	C	C	T	rs113349418		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MAML2	NM_032427	exon2	c.G1812A	p.Q604Q	.	.	94	12	85	0	C|0.500;T|0.500	850
MDM2	4193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69233083	69233083	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MDM2	NM_002392	exon11	c.A948C	p.E316D	.	.	33	16	45	0	.	1270
MGA	23269	hgsc.bcm.edu	37	15	42052625	42052625	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MGA	NM_001164273	exon20	c.G7296T	p.E2432D	.	.	77	4	98	0	.	522
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49433836	49433836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MLL2	NM_003482	exon31	c.G7717A	p.G2573S	.	.	53	8	60	0	.	612
MPHOSPH9	10198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123702951	123702951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MPHOSPH9	NM_022782	exon2	c.A512T	p.E171V	.	.	312	76	349	0	.	514
MTERF	7978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91503797	91503797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MTERF	NM_006980	exon3	c.A311T	p.E104V	.	.	91	35	92	0	.	90
MTSS1L	92154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70698128	70698128	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MTSS1L	NM_138383	exon15	c.C1696T	p.R566C	.	.	41	21	30	0	.	68
MXD1	4084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	70165400	70165400	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MXD1	NM_002357	exon6	c.C650T	p.A217V	.	.	79	33	71	0	.	226
MYD88	4615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38181897	38181897	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MYD88	NM_002468	exon3	c.T521A	p.F174Y	.	.	84	38	58	0	.	901
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1843065	1843065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	MYT1L	NM_015025	exon21	c.C2930G	p.P977R	.	.	52	31	63	0	.	95
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24881562	24881562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NCOA1	NM_147223	exon3	c.G16T	p.D6Y	.	.	75	34	87	0	.	228
ND4L	0	broad.mit.edu	37	MT	10683	10683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	ENST00000361335	exon1	c.G214T	p.A72S	.	.	513	8	11	0	.	.
NETO1	81832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	70417483	70417483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NETO1	NM_001201465	exon9	c.C1355A	p.A452D	.	.	202	117	170	0	.	94
NHS	4810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	17745541	17745541	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NHS	NM_198270	exon6	c.T3252C	p.R1084R	.	.	143	75	143	0	.	197
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32170085	32170085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOTCH4	NM_004557	exon21	c.G3523T	p.A1175S	.	.	60	21	42	0	.	1321
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100104832	100104832	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOX1	NM_013955	exon10	c.C1225G	p.P409A	.	.	293	163	241	0	.	131
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155774563	155774563	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NOX3	NM_015718	exon4	c.C315T	p.V105V	.	.	63	57	174	0	.	91
NR0B2	8431	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27240140	27240140	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NR0B2	NM_021969	exon1	c.C292A	p.L98I	.	.	59	38	55	1	.	186
NR4A2	4929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	157186238	157186238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	NR4A2	NM_006186	exon3	c.A461T	p.Q154L	.	.	88	39	75	0	.	189
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228528927	228528927	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OBSCN	NM_001271223	exon84	c.C20700A	p.V6900V	.	.	72	17	38	0	.	403
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	88415951	88415951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OPN4	NM_033282	exon2	c.A184G	p.T62A	.	.	104	43	105	0	.	69
OR52R1	119695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4824853	4824853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR52R1	NM_001005177	exon1	c.C758A	p.A253D	.	.	58	13	50	0	.	69
OR6C2	341416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55846722	55846722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR6C2	NM_054105	exon1	c.A725T	p.H242L	.	.	134	47	175	0	.	70
OR9A4	130075	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141618728	141618728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OR9A4	NM_001001656	exon1	c.G53T	p.G18V	.	.	125	43	145	1	.	91
OSBPL7	114881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	45890656	45890656	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OSBPL7	NM_145798	exon16	c.A1713G	p.R571R	.	.	30	13	26	0	.	68
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	4	4228502	4228502	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OTOP1	NM_177998	exon1	c.T90A	p.P30P	.	.	15	11	8	0	.	92
OXCT1	5019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41739504	41739504	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	OXCT1	NM_000436	exon16	c.G1509C	p.G503G	.	.	128	52	123	0	.	133
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21369505	21369505	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_001159554	exon1	c.A42T	p.P14P	.	.	40	18	35	0	.	.
PABPC3	5042	bcgsc.ca	37	13	25670919	25670919	+	Missense_Mutation	SNP	A	A	G	rs76861216	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PABPC3	NM_030979	exon1	c.A583G	p.I195V	.	.	60	7	107	0	A|0.500;G|0.500	72
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	39664257	39664257	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PAK4	NM_001014832	exon4	c.G705T	p.G235G	.	.	28	17	24	0	.	957
PBX2	5089	broad.mit.edu	37	6	32156280	32156280	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PBX2	NM_002586	exon3	c.C297A	p.G99G	.	.	57	6	39	3	.	91
PCDHA6	56142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140209357	140209357	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PCDHA6	NM_018909	exon1	c.A1681T	p.N561Y	.	.	56	26	51	0	.	92
PCDHB6	56130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140531345	140531345	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PCDHB6	NM_018939	exon1	c.T1507A	p.S503T	.	.	42	14	36	0	.	91
PDE6A	5145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	149314265	149314265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PDE6A	NM_000440	exon2	c.A491G	p.D164G	.	.	68	30	66	0	.	92
PGF	5228	ucsc.edu	37	14	75415221	75415221	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PGF	NM_002632	exon4	c.C381A	p.R127R	.	.	42	4	32	0	.	91
PHF20	51230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34451299	34451299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PHF20	NM_016436	exon6	c.G785A	p.R262K	.	.	78	31	76	0	.	515
PI3	5266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43804641	43804641	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PI3	NM_002638	exon2	c.T219G	p.P73P	.	.	89	48	69	0	.	514
PION	54103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76982269	76982269	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PION	NM_017439	exon18	c.T1483G	p.W495G	.	.	92	41	113	0	.	514
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	22829005	22829005	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PIP4K2A	NM_005028	exon10	c.1037-2A>T	.	.	.	46	22	36	0	.	665
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	28824137	28824137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLB1	NM_153021	exon37	c.G2545A	p.D849N	.	.	78	37	79	0	.	141
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8608977	8608977	+	Missense_Mutation	SNP	A	A	T	rs199888561	alternate_allele	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLCB1	NM_015192	exon4	c.C283T	p.P95S	.	.	120	59	83	1	A|0.999;G|0.001	297
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67320230	67320230	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PLEKHG4	NM_001129728	exon15	c.T2496C	p.D832D	.	.	63	27	45	0	.	92
PMP22	5376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	15162456	15162456	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PMP22	NM_153322	exon2	c.T133C	p.S45P	.	.	51	46	74	0	.	90
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121264699	121264699	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	POLQ	NM_199420	exon1	c.A26T	p.K9I	.	.	40	15	37	0	.	664
POU3F4	5456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	82764109	82764109	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	POU3F4	NM_000307	exon1	c.G777T	p.A259A	.	.	127	54	114	0	.	131
PPP4R1L	55370	ucsc.edu	37	20	56807870	56807870	+	RNA	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PPP4R1L	.	.	.	.	.	.	29	14	32	0	.	226
PTK2B	2185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27315905	27315905	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	PTK2B	NM_173174	exon36	c.A2909T	p.E970V	.	.	16	15	43	0	.	1378
RAB18	22931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27793366	27793366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RAB18	NM_001256411	exon1	c.G68C	p.S23T	.	.	55	31	44	0	.	227
RAPGEF5	9771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	22259519	22259519	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RAPGEF5	NM_012294	exon9	c.A503T	p.Q168L	.	.	153	76	161	0	.	206
RBBP8NL	140893	ucsc.edu;bcgsc.ca;mdanderson.org	37	20	60990663	60990663	+	Missense_Mutation	SNP	T	T	C	rs190875685		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_080833	exon8	c.A598G	p.T200A	.	.	78	33	69	0	T|0.998;C|0.002	.
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	109693862	109693862	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RGAG1	NM_020769	exon3	c.A17G	p.H6R	.	.	65	29	61	0	.	132
RHBDL3	162494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	30621329	30621329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RHBDL3	NM_138328	exon5	c.A536G	p.Y179C	.	.	118	55	112	0	.	91
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	73102430	73102430	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RIMS1	NM_014989	exon31	c.T4536A	p.A1512A	.	.	72	64	126	0	.	144
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30779293	30779293	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RNF40	NM_014771	exon12	c.G1508A	p.R503Q	.	.	49	17	51	0	.	226
RNR2	6053	broad.mit.edu	37	MT	2519	2519	+	RNA	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	508	39	29	0	.	.
RNU6-71	100873774	broad.mit.edu;ucsc.edu;mdanderson.org	37	6	56468122	56468122	+	RNA	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	134	38	95	0	.	.
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	78737868	78737868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ROBO1	NM_002941	exon9	c.C1100A	p.T367N	.	.	51	16	57	0	.	67
RPGR	6103	ucsc.edu	37	X	38145190	38145190	+	Missense_Mutation	SNP	A	A	T	rs144299434	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RPGR	NM_001034853	exon15	c.T3062A	p.V1021E	.	.	90	14	87	1	A|0.995;T|0.005	131
RRAGA	10670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	19050112	19050112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RRAGA	NM_006570	exon1	c.C455T	p.S152F	.	.	52	18	62	0	.	90
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	101350239	101350239	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RTL1	NM_001134888	exon1	c.A887T	p.Q296L	.	.	33	16	34	0	.	46
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71659507	71659507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RUFY3	NM_001037442	exon13	c.G1343A	p.R448H	.	.	195	41	155	0	.	90
RUNX2	860	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	45296466	45296466	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	RUNX2	NM_001024630	exon2	c.G3T	p.M1I	.	.	156	92	105	1	.	417
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	51174758	51174758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SALL1	NM_002968	exon2	c.G1375A	p.G459R	.	.	52	26	57	0	.	98
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	102269083	102269083	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SEC31B	NM_015490	exon4	c.A389G	p.N130S	.	.	70	22	70	0	.	91
SGK2	10110	ucsc.edu	37	20	42199295	42199295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SGK2	NM_016276	exon6	c.G579T	p.E193D	.	.	41	4	36	0	.	990
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51169670	51169670	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SHANK1	NM_016148	exon22	c.A5547G	p.P1849P	.	.	53	27	56	0	.	153
SIRPB1	10326	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	1551748	1551748	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SIRPB1	NM_006065	exon4	c.A787G	p.R263G	.	.	101	48	77	1	.	91
SLAMF7	57823	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160720138	160720138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLAMF7	NM_021181	exon4	c.C694A	p.L232M	.	.	183	72	208	1	.	93
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	48490859	48490859	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC10A4	NM_152679	exon3	c.A1217T	p.Y406F	.	.	76	34	60	0	.	90
SLC12A8	84561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	124826958	124826958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC12A8	NM_024628	exon10	c.A1072G	p.K358E	.	.	49	14	48	0	.	22
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150701730	150701730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC36A2	NM_181776	exon9	c.A1057T	p.T353S	.	.	63	26	49	0	.	91
SLC41A3	54946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	125769824	125769824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SLC41A3	NM_017836	exon3	c.A343T	p.N115Y	.	.	25	15	30	0	.	90
SMAD3	4088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	67477190	67477190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SMAD3	NM_005902	exon7	c.A997G	p.K333E	.	.	43	24	57	0	.	904
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	118623785	118623785	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SPAG17	NM_206996	exon15	c.T2148C	p.D716D	.	.	150	66	152	0	.	158
SPATA31D4	389761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	84547809	84547809	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_001145197	exon4	c.C2733T	p.P911P	.	.	172	56	173	0	.	.
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158589013	158589013	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SPTA1	NM_003126	exon45	c.A6529C	p.R2177R	.	.	107	39	108	0	.	142
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52558211	52558211	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	STAB1	NM_015136	exon68	c.C7638T	p.T2546T	.	.	86	48	62	0	.	139
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36485045	36485045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	STAC	NM_003149	exon2	c.C301G	p.L101V	.	.	41	23	36	0	.	94
SUGP2	10147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19136956	19136956	+	Silent	SNP	T	T	A	rs144099788	alternate_allele	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SUGP2	NM_014884	exon3	c.A201T	p.G67G	.	.	23	8	27	0	T|1.000;C|0.000	91
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	70541750	70541750	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SULF1	NM_001128205	exon19	c.A2120T	p.Q707L	.	.	224	54	117	0	.	518
SYT9	143425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	7437386	7437386	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	SYT9	NM_175733	exon4	c.A1158G	p.G386G	.	.	52	14	67	0	.	155
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	85446945	85446945	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TBX18	NM_001080508	exon8	c.A1282T	p.N428Y	.	.	72	66	100	0	.	73
TERF1	7013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	73939235	73939235	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TERF1	NM_017489	exon6	c.A835T	p.S279C	.	.	42	10	24	0	.	228
TES	26136	mdanderson.org	37	7	115897392	115897392	+	Silent	SNP	G	G	T	rs4710	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TES	NM_015641	exon7	c.G1122T	p.R374R	.	.	119	58	81	1	T|0.000;G|0.612;C|0.388	514
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2384055	2384055	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TGM6	NM_198994	exon8	c.C1002G	p.V334V	.	.	72	35	60	0	.	94
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43574767	43574767	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TGM7	NM_052955	exon8	c.A1056T	p.P352P	.	.	41	23	41	0	.	92
THAP4	51078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242542471	242542471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_015963	exon4	c.C1424T	p.T475M	.	.	23	13	31	0	.	.
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134158	128134158	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	THEMIS	NM_001010923	exon4	c.T1628C	p.M543T	.	.	35	31	77	0	.	94
TMEM163	81615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135260482	135260482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMEM163	NM_030923	exon5	c.T545C	p.L182P	.	.	94	39	96	0	.	90
TMEM51-AS1	200197	ucsc.edu	37	1	15438892	15438892	+	RNA	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	55	34	64	0	.	.
TMEM63B	55362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	44116103	44116103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMEM63B	NM_018426	exon13	c.A1102G	p.N368D	.	.	63	12	25	0	.	92
TMEM67	91147	ucsc.edu	37	8	94767137	94767137	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMEM67	.	.	.	.	.	.	147	24	103	0	.	92
TMSB15B	286527	ucsc.edu	37	X	103220363	103220363	+	RNA	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TMSB15B	.	.	.	.	.	.	17	11	13	0	.	130
TNN	63923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	175046732	175046732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TNN	NM_022093	exon2	c.G178A	p.A60T	.	.	96	49	77	0	.	138
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144408432	144408432	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TOP1MT	NM_052963	exon4	c.A443G	p.K148R	.	.	163	9	68	0	.	91
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3716009	3716009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRAP1	NM_016292	exon12	c.G1346A	p.R449Q	.	.	95	41	88	0	.	226
TRIM31	11074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30080321	30080321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRIM31	NM_007028	exon2	c.T262C	p.S88P	.	.	126	35	85	0	.	658
TRIM49	57093	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	11	89531677	89531677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRIM49	NM_020358	exon8	c.G980A	p.S327N	.	.	74	17	96	0	.	84
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77435310	77435310	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TRPM6	NM_017662	exon9	c.C1044A	p.I348I	.	.	52	18	32	0	.	335
TSPYL6	388951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54482488	54482488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TSPYL6	NM_001003937	exon1	c.A801T	p.R267S	.	.	95	49	74	0	.	90
TUBA4B	80086	broad.mit.edu;ucsc.edu	37	2	220136440	220136440	+	RNA	SNP	G	G	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	44	21	38	0	.	.
TUBB8	347688	broad.mit.edu;mdanderson.org	37	10	93652	93652	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TUBB8	NM_177987	exon4	c.A680T	p.H227L	.	.	24	9	20	0	.	69
TUBGCP5	114791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	22848918	22848918	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	TUBGCP5	NM_052903	exon10	c.A965T	p.Q322L	.	.	52	27	62	0	.	91
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128870806	128870806	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UGGT1	NM_020120	exon6	c.A670T	p.N224Y	.	.	247	93	275	0	.	91
UGT2B4	7363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	70346460	70346460	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UGT2B4	NM_021139	exon6	c.G1479C	p.V493V	.	.	107	55	117	0	.	92
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19698995	19698995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ULK2	NM_001142610	exon20	c.C2041A	p.P681T	.	.	116	109	204	0	.	334
UMODL1	89766	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43535988	43535988	+	Missense_Mutation	SNP	C	C	T	rs200664665	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UMODL1	NM_173568	exon13	c.C2752T	p.R918W	.	.	117	50	95	0	C|0.997;T|0.003	93
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	17716933	17716933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNC13A	NM_001080421	exon42	c.C5042A	p.A1681D	.	.	53	16	76	0	.	25
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33504605	33504605	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNC45B	NM_173167	exon17	c.T2237A	p.L746Q	.	.	47	24	31	0	.	157
UNK	85451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73805856	73805856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	UNK	NM_001080419	exon2	c.C120A	p.F40L	.	.	54	21	45	0	.	68
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6773000	6773000	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VAV1	NM_005428	exon1	c.A182T	p.N61I	.	.	67	29	78	0	.	1276
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82816442	82816442	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VCAN	NM_004385	exon7	c.A2317T	p.T773S	.	.	53	27	45	0	.	238
VPS37D	155382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	73085576	73085576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VPS37D	NM_001077621	exon4	c.C626T	p.A209V	.	.	40	17	36	0	.	68
VPS72	6944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151156881	151156881	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VPS72	NM_001271087	exon4	c.A474T	p.R158R	.	.	77	36	55	0	.	154
VTA1	51534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	142468439	142468439	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	VTA1	NM_016485	exon1	c.A15G	p.A5A	.	.	22	18	35	0	.	90
WIPF2	147179	broad.mit.edu	37	17	38430127	38430127	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	WIPF2	NM_133264	exon6	c.A1056C	p.E352D	.	.	83	20	64	11	.	93
WRNIP1	56897	hgsc.bcm.edu	37	6	2766144	2766144	+	Silent	SNP	T	T	C	rs17851692	byfrequency	TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	WRNIP1	NM_130395	exon1	c.T288C	p.G96G	.	.	6	6	0	0	T|0.672;C|0.328	92
ZC2HC1A	51101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	79590890	79590890	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_016010	exon3	c.A186G	p.P62P	.	.	146	61	99	0	.	.
ZCRB1	85437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	42711634	42711634	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZCRB1	NM_033114	exon4	c.T180C	p.D60D	.	.	98	62	133	0	.	91
ZIC3	7547	broad.mit.edu	37	X	136649009	136649009	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZIC3	NM_003413	exon1	c.C159T	p.A53A	.	.	43	4	46	0	.	195
ZKSCAN7	55888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	44612664	44612665	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_018651	exon6	c.2062_2063insA	p.E688fs	.	.	56	21	65	0	.	.
ZNF185	7739	hgsc.bcm.edu;mdanderson.org	37	X	152110314	152110314	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF185	NM_001178115	exon1	c.C62A	p.A21D	.	.	108	46	91	0	.	133
ZNF391	346157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27368962	27368962	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF391	NM_001076781	exon3	c.C813G	p.H271Q	.	.	118	38	86	0	.	69
ZNF469	84627	hgsc.bcm.edu	37	16	88497031	88497031	+	Silent	SNP	T	T	C	rs9924504		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	NM_001127464	exon1	c.T3153C	p.I1051I	.	.	4	4	0	0	T|0.003;C|0.997	.
ZNF525	170958	broad.mit.edu	37	19	53879043	53879043	+	RNA	SNP	T	T	C	rs62115350		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	.	.	.	.	.	.	.	26	4	32	0	.	.
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53668959	53668959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M4-01A-11D-A32G-10	TCGA-RC-A6M4-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	559b7362-9b75-4be3-b8bc-5f3e28b71cd8	eb1e50b4-ccfb-4b5d-8180-a19d2e42b2a2	.	ZNF665	NM_024733	exon4	c.T784A	p.Y262N	.	.	85	27	67	0	.	70
