Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ADH4	127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100052694	100052694	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ADH4	NM_000670	exon6	c.G804C	p.V268V	.	.	98	10	86	0	.	228
ALG1	56052	broad.mit.edu	37	16	5129756	5129756	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ALG1	NM_019109	exon9	c.A909G	p.E303E	.	.	123	8	118	1	.	92
ANKRD30BP2	149992	broad.mit.edu	37	21	14415103	14415103	+	RNA	SNP	C	C	G	rs2821612	bysubmitter	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	.	.	.	.	.	.	25	5	26	0	.	.
ARHGAP26	23092	bcgsc.ca	37	5	142258985	142258985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ARHGAP26	NM_015071	exon4	c.G359A	p.R120Q	.	.	161	6	141	2	.	660
ARSE	415	broad.mit.edu;bcgsc.ca	37	X	2856289	2856289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ARSE	NM_000047	exon9	c.G1136A	p.G379D	.	.	162	6	150	0	.	131
ATAD2	29028	broad.mit.edu	37	8	124382161	124382161	+	Missense_Mutation	SNP	A	A	T	rs200740522		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ATAD2	NM_014109	exon7	c.T831A	p.D277E	.	.	209	4	179	1	.	92
B4GALT2	8704	ucsc.edu;bcgsc.ca	37	1	44451245	44451245	+	Missense_Mutation	SNP	G	G	A	rs200368860		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	B4GALT2	NM_030587	exon6	c.G1007A	p.R336H	.	.	39	4	38	0	.	92
BIRC6	57448	broad.mit.edu	37	2	32756491	32756491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	BIRC6	NM_016252	exon61	c.G12164T	p.G4055V	.	.	169	4	149	0	.	233
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32768519	32768519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	BIRC6	NM_016252	exon62	c.C12503T	p.P4168L	.	.	90	12	90	0	.	233
CBLL1	79872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107399297	107399297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CBLL1	NM_024814	exon6	c.A1150G	p.I384V	.	.	89	21	92	0	.	229
CCDC168	643677	broad.mit.edu	37	13	103396295	103396295	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	NM_001146197	exon4	c.A6752G	p.K2251R	.	.	146	3	152	0	.	.
CCDC8	83987	broad.mit.edu	37	19	46915686	46915686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CCDC8	NM_032040	exon1	c.C382T	p.R128C	.	.	33	3	43	0	.	93
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	43021296	43021296	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CDAN1	NM_138477	exon19	c.A2570G	p.N857S	.	.	69	6	55	0	.	92
CDC37L1	55664	broad.mit.edu;ucsc.edu	37	9	4697851	4697851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CDC37L1	NM_017913	exon5	c.G719A	p.C240Y	.	.	136	5	160	0	.	90
CHIT1	1118	bcgsc.ca	37	1	203186947	203186947	+	Missense_Mutation	SNP	G	G	C	rs201682373	byfrequency	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CHIT1	NM_003465	exon10	c.C1076G	p.A359G	.	.	36	7	20	1	G|0.988;C|0.012	90
COL14A1	7373	broad.mit.edu;bcgsc.ca	37	8	121238908	121238908	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	COL14A1	NM_021110	exon16	c.C1907T	p.T636M	.	.	73	6	56	0	.	543
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	CSGALNACT2	NM_018590	exon5	c.G1086T	p.L362F	.	.	249	5	201	1	.	69
DDX12P	440081	ucsc.edu	37	12	9574020	9574020	+	RNA	SNP	T	T	C	rs200847155		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	.	.	.	.	.	.	69	12	67	1	T|0.998;C|0.002	.
DHX34	9704	broad.mit.edu	37	19	47856796	47856796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	DHX34	NM_014681	exon2	c.G509A	p.R170H	.	.	54	3	41	0	.	231
DSPP	1834	hgsc.bcm.edu	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	DSPP	NM_014208	exon5	c.T3480C	p.S1160S	.	.	59	9	70	0	.	90
FAM155A	728215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	108518523	108518523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FAM155A	NM_001080396	exon1	c.G422C	p.G141A	.	.	65	15	50	0	.	23
FAM186A	121006	broad.mit.edu	37	12	50746672	50746672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FAM186A	NM_001145475	exon4	c.T3943C	p.F1315L	.	.	76	5	83	0	.	68
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159646689	159646689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FNDC1	NM_032532	exon8	c.G1007A	p.R336H	.	.	78	18	80	0	.	138
FSTL1	11167	broad.mit.edu	37	3	120122185	120122185	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	FSTL1	NM_007085	exon8	c.G598C	p.A200P	.	.	99	7	116	0	.	90
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	30903143	30903143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	GADL1	NM_207359	exon2	c.A152T	p.E51V	.	.	244	18	265	0	.	90
GRID2	2895	broad.mit.edu;bcgsc.ca	37	4	94032016	94032016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	GRID2	NM_001510	exon4	c.G647A	p.R216K	.	.	129	12	150	1	.	159
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu	37	22	37966624	37966626	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LGALS2	NM_006498	exon3	c.206_208del	p.69_70del	.	.	137	11	125	0	.	154
LONRF1	91694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	12600698	12600698	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LONRF1	NM_152271	exon2	c.T815G	p.L272R	.	.	222	20	216	0	.	91
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101608980	101608980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	LRRK1	NM_024652	exon34	c.G5975A	p.R1992K	.	.	112	8	96	0	.	602
MDS2	259283	bcgsc.ca	37	1	23965743	23965751	+	RNA	DEL	TGACTGCCT	TGACTGCCT	-	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	TGACTGCCT	TGACTGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MDS2	.	.	.	.	.	.	112	4	125	0	.	638
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129903267	129903267	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MKI67	NM_002417	exon13	c.6837delG	p.M2279fs	.	.	205	23	201	0	.	519
MRC1	4360	broad.mit.edu	37	10	17875789	17875789	+	Silent	SNP	C	C	T	rs138394788		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MRC1	NM_002438	exon4	c.C753T	p.N251N	.	.	40	7	31	0	C|1.000;T|0.000	68
MRC1	4360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	18122743	18122743	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MRC1	NM_002438	exon4	c.C753T	p.N251N	.	.	189	18	181	0	.	68
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	15815347	15815347	+	Silent	SNP	G	G	T	rs144823441	alternate_allele	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MYH11	NM_001040114	exon33	c.C4531A	p.R1511R	.	.	182	31	175	0	G|1.000;A|0.000	666
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2017578	2017578	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	MYOM2	NM_003970	exon8	c.A755T	p.D252V	.	.	271	33	272	0	.	95
NCOA6	23054	broad.mit.edu	37	20	33345756	33345756	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NCOA6	NM_014071	exon7	c.A795G	p.Q265Q	.	.	88	3	81	0	.	292
NFE2L3	9603	broad.mit.edu;ucsc.edu	37	7	26224602	26224602	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NFE2L3	NM_004289	exon4	c.T1284C	p.N428N	.	.	89	14	84	1	.	94
NONO	4841	ucsc.edu	37	X	70514186	70514186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NONO	NM_001145408	exon6	c.G458A	p.R153Q	.	.	86	1	76	0	.	231
NRD1	4898	hgsc.bcm.edu	37	1	52306079	52306079	+	Missense_Mutation	SNP	T	T	A	rs62648104		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NRD1	NM_002525	exon2	c.A449T	p.E150V	.	.	268	18	303	0	T|0.024;A|0.976	90
NUP50	10762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	45580526	45580526	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	NUP50	NM_007172	exon8	c.A1397G	p.K466R	.	.	118	7	155	0	.	68
OR2AE1	81392	broad.mit.edu	37	7	99474634	99474634	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	OR2AE1	NM_001005276	exon1	c.C23A	p.S8Y	.	.	73	4	55	0	.	90
PARP1	142	broad.mit.edu;bcgsc.ca	37	1	226564926	226564926	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	PARP1	NM_001618	exon13	c.G1824A	p.E608E	.	.	227	7	178	0	.	727
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu	37	19	1487019	1487019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	PCSK4	NM_017573	exon8	c.G901A	p.G301S	.	.	69	4	50	0	.	90
PRDM10	56980	broad.mit.edu	37	11	129788513	129788513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	PRDM10	NM_020228	exon15	c.G2147A	p.R716H	.	.	219	4	197	0	.	91
PRDM2	7799	bcgsc.ca	37	1	14105139	14105139	+	Missense_Mutation	SNP	T	T	A	rs2076324	byfrequency	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	PRDM2	NM_015866	exon8	c.T849A	p.D283E	.	.	64	4	52	0	T|0.572;A|0.428	116
RET	5979	broad.mit.edu	37	10	43597940	43597940	+	Missense_Mutation	SNP	G	G	A	rs149403911		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	RET,NS,carcinoma,0	RET	NM_020975	exon3	c.G488A	p.R163Q	.	.	68	3	71	0	G|1.000;A|0.000	4507
RUNX2	860	broad.mit.edu	37	6	45514583	45514583	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	RUNX2	NM_001024630	exon9	c.T1107C	p.P369P	.	.	105	3	79	0	.	417
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51173735	51173735	+	Missense_Mutation	SNP	C	C	T	rs200755920		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SALL1	NM_002968	exon2	c.G2398A	p.D800N	.	.	133	10	144	0	C|0.999;T|0.000	98
SGCZ	137868	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	13948007	13948007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SGCZ	NM_139167	exon8	c.C884A	p.P295Q	.	.	66	5	66	0	.	93
SGSM1	129049	broad.mit.edu;bcgsc.ca	37	22	25301103	25301103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SGSM1	NM_001039948	exon22	c.G2932A	p.V978I	.	.	165	6	162	0	.	27
SLC31A1	1317	broad.mit.edu	37	9	116018537	116018537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SLC31A1	NM_001859	exon2	c.G109T	p.D37Y	.	.	136	5	114	0	.	90
SRGN	5552	broad.mit.edu	37	10	70847943	70847943	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	SRGN	NM_002727	exon1	c.G30A	p.R10R	.	.	114	4	89	0	.	514
TCEA3	6920	broad.mit.edu	37	1	23743819	23743819	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	NM_003196	exon4	c.A303G	p.K101K	.	.	301	4	276	0	.	.
TCERG1	10915	hgsc.bcm.edu	37	5	145838623	145838624	+	In_Frame_Ins	INS	-	-	CAGGCT	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	TCERG1	NM_006706	exon4	c.615_616insCAGGCT	p.A205delinsAQA	.	.	101	35	93	0	.	92
TIMM23	100287932	broad.mit.edu	37	10	51623197	51623197	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	TIMM23	NM_006327	exon1	c.A18G	p.G6G	.	.	346	34	318	22	.	68
TSGA10IP	254187	broad.mit.edu	37	11	65726395	65726395	+	RNA	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	TSGA10IP	.	.	.	.	.	.	81	5	95	0	.	22
URB1	9875	broad.mit.edu	37	21	33719701	33719701	+	Silent	SNP	G	G	T	rs115465303	byfrequency;by1000genomes;alternate_allele	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	NM_014825	exon22	c.C3432A	p.P1144P	.	.	112	4	67	0	G|0.995;A|0.005	.
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	61607465	61607465	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	USP34	NM_014709	exon7	c.C853T	p.R285X	.	.	84	12	132	0	.	579
WDR60	55112	broad.mit.edu	37	7	158723171	158723171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	WDR60	NM_018051	exon21	c.G2511T	p.K837N	.	.	245	6	234	0	.	92
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	3806099	3806099	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZFR2	NM_015174	exon19	c.C2668T	p.R890W	.	.	88	10	69	0	.	70
ZKSCAN4	387032	broad.mit.edu	37	6	28219756	28219756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZKSCAN4	NM_019110	exon1	c.G3A	p.M1I	.	.	138	5	94	0	.	91
ZNF280D	54816	broad.mit.edu	37	15	56946640	56946640	+	Missense_Mutation	SNP	T	T	C	rs145377577	byfrequency	TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZNF280D	NM_017661	exon18	c.A2119G	p.M707V	.	.	235	5	243	0	T|0.999;C|0.001	46
ZNF525	170958	broad.mit.edu	37	19	53879043	53879043	+	RNA	SNP	T	T	C	rs62115350		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	.	.	.	.	.	.	47	4	35	0	.	.
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	12059950	12059950	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	ZNF700	NM_001271848	exon4	c.T1120C	p.F374L	.	.	68	9	69	0	.	90
ZNF853	54753	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6660769	6660769	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M5-01A-11D-A32G-10	TCGA-RC-A6M5-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bc57f84-c45f-45a1-9a62-0e2972598fa7	76a1244e-bd30-4dbb-95ee-857b135bb56e	.	.	NM_017560	exon3	c.C147A	p.S49R	.	.	45	5	42	0	.	.
